Query psy14728
Match_columns 319
No_of_seqs 202 out of 3758
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 19:07:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 100.0 3.5E-34 1.2E-38 251.8 25.0 295 15-319 44-343 (347)
2 4fmz_A Internalin; leucine ric 100.0 6.8E-33 2.3E-37 243.5 25.7 276 34-319 45-321 (347)
3 1o6v_A Internalin A; bacterial 100.0 3E-32 1E-36 248.7 21.4 256 55-318 86-384 (466)
4 1o6v_A Internalin A; bacterial 100.0 1.3E-31 4.4E-36 244.6 24.2 257 54-318 63-340 (466)
5 3bz5_A Internalin-J, INLJ; leu 100.0 5.4E-29 1.8E-33 226.2 24.7 210 54-271 37-247 (457)
6 3o6n_A APL1; leucine-rich repe 100.0 5.2E-29 1.8E-33 222.2 22.8 105 55-159 65-177 (390)
7 3o6n_A APL1; leucine-rich repe 100.0 6.1E-29 2.1E-33 221.8 22.8 294 11-319 41-349 (390)
8 2id5_A Lingo-1, leucine rich r 100.0 5E-29 1.7E-33 228.1 22.1 265 35-302 34-340 (477)
9 3bz5_A Internalin-J, INLJ; leu 100.0 5.3E-28 1.8E-32 219.6 27.0 269 33-318 42-348 (457)
10 3t6q_A CD180 antigen; protein- 100.0 3.7E-28 1.3E-32 228.7 24.2 127 144-270 275-413 (606)
11 2id5_A Lingo-1, leucine rich r 100.0 3.6E-28 1.2E-32 222.4 23.3 278 15-296 32-357 (477)
12 3oja_B Anopheles plasmodium-re 100.0 2.2E-28 7.5E-33 229.7 22.2 256 53-318 69-354 (597)
13 4eco_A Uncharacterized protein 100.0 1.5E-28 5.2E-33 232.2 20.8 298 13-319 247-597 (636)
14 4eco_A Uncharacterized protein 100.0 1.3E-28 4.5E-33 232.7 20.3 281 31-319 247-576 (636)
15 3v47_A TOLL-like receptor 5B a 100.0 9.3E-29 3.2E-33 224.9 18.1 283 15-299 30-412 (455)
16 3oja_B Anopheles plasmodium-re 100.0 4.1E-28 1.4E-32 227.9 22.8 255 57-319 49-334 (597)
17 4ecn_A Leucine-rich repeat pro 100.0 5.1E-28 1.7E-32 233.5 23.3 279 32-319 490-837 (876)
18 4ecn_A Leucine-rich repeat pro 100.0 6.2E-28 2.1E-32 232.9 23.1 280 13-298 489-843 (876)
19 3t6q_A CD180 antigen; protein- 100.0 2.7E-27 9.4E-32 222.8 25.4 261 53-318 272-556 (606)
20 3vq2_A TLR4, TOLL-like recepto 100.0 9.3E-28 3.2E-32 226.0 20.5 128 189-319 374-507 (606)
21 3v47_A TOLL-like receptor 5B a 100.0 2E-27 6.8E-32 216.1 21.9 260 11-272 50-410 (455)
22 3vq2_A TLR4, TOLL-like recepto 100.0 8.4E-27 2.9E-31 219.5 23.3 244 55-301 281-564 (606)
23 2z81_A CD282 antigen, TOLL-lik 100.0 9E-27 3.1E-31 216.7 22.6 123 15-139 26-162 (549)
24 2z63_A TOLL-like receptor 4, v 100.0 2.9E-27 9.8E-32 221.0 19.2 128 187-318 392-527 (570)
25 1jl5_A Outer protein YOPM; leu 100.0 5.7E-26 1.9E-30 206.1 26.8 224 59-297 131-372 (454)
26 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-26 4.1E-31 202.5 21.0 255 58-319 53-330 (332)
27 1xku_A Decorin; proteoglycan, 100.0 2.3E-26 7.9E-31 200.5 22.8 256 58-319 51-329 (330)
28 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-26 4E-31 214.6 21.7 100 15-117 21-129 (520)
29 1jl5_A Outer protein YOPM; leu 99.9 3.2E-26 1.1E-30 207.8 24.0 250 8-271 4-291 (454)
30 3rgz_A Protein brassinosteroid 99.9 7.4E-27 2.5E-31 225.3 20.6 299 15-319 294-714 (768)
31 3zyj_A Leucine-rich repeat-con 99.9 8.1E-26 2.8E-30 204.7 25.4 242 60-303 44-300 (440)
32 3rgz_A Protein brassinosteroid 99.9 1.2E-26 3.9E-31 224.0 20.7 302 14-319 49-378 (768)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.5E-26 8.6E-31 214.4 22.3 99 15-116 52-159 (562)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-25 5E-30 209.2 27.1 102 34-138 53-159 (562)
35 3zyi_A Leucine-rich repeat-con 99.9 1.7E-25 5.7E-30 203.4 26.4 242 60-303 55-311 (452)
36 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-26 5.4E-31 213.7 19.8 104 33-139 21-129 (520)
37 1ziw_A TOLL-like receptor 3; i 99.9 2.4E-25 8.3E-30 212.2 27.9 195 121-319 401-619 (680)
38 2z63_A TOLL-like receptor 4, v 99.9 2.1E-26 7.1E-31 215.1 19.8 123 15-139 28-163 (570)
39 3g06_A SSPH2 (leucine-rich rep 99.9 3.7E-25 1.3E-29 207.0 27.2 219 58-296 80-298 (622)
40 2z66_A Variable lymphocyte rec 99.9 7.2E-26 2.5E-30 195.3 20.8 238 62-301 10-267 (306)
41 1ziw_A TOLL-like receptor 3; i 99.9 3.1E-25 1E-29 211.5 26.0 279 35-319 250-594 (680)
42 3j0a_A TOLL-like receptor 5; m 99.9 9.7E-26 3.3E-30 219.7 21.3 235 15-250 24-377 (844)
43 2z81_A CD282 antigen, TOLL-lik 99.9 4.1E-25 1.4E-29 205.5 24.4 173 124-300 333-515 (549)
44 1h6u_A Internalin H; cell adhe 99.9 4.8E-26 1.6E-30 196.6 16.6 195 55-249 37-231 (308)
45 3j0a_A TOLL-like receptor 5; m 99.9 2E-25 6.8E-30 217.4 22.7 264 31-297 22-377 (844)
46 3o53_A Protein LRIM1, AGAP0063 99.9 5.9E-27 2E-31 203.2 10.6 216 54-295 29-250 (317)
47 1xku_A Decorin; proteoglycan, 99.9 2.9E-25 1E-29 193.5 21.3 256 34-293 53-330 (330)
48 1h6u_A Internalin H; cell adhe 99.9 1.5E-25 5E-30 193.5 17.3 213 61-273 21-233 (308)
49 2ft3_A Biglycan; proteoglycan, 99.9 1E-24 3.6E-29 190.2 22.8 251 59-318 33-303 (332)
50 2z80_A TOLL-like receptor 2, v 99.9 2.4E-25 8.1E-30 195.9 18.0 240 59-299 52-318 (353)
51 3o53_A Protein LRIM1, AGAP0063 99.9 9.7E-27 3.3E-31 201.8 7.8 228 34-267 35-272 (317)
52 3g06_A SSPH2 (leucine-rich rep 99.9 7.4E-24 2.5E-28 198.2 25.8 234 59-319 61-294 (622)
53 4g8a_A TOLL-like receptor 4; l 99.9 2.7E-24 9.2E-29 203.0 22.0 113 191-304 469-589 (635)
54 3oja_A Leucine-rich immune mol 99.9 1.3E-25 4.4E-30 205.6 11.6 231 56-290 31-270 (487)
55 1ogq_A PGIP-2, polygalacturona 99.9 2.8E-25 9.6E-30 192.2 12.5 236 59-297 50-306 (313)
56 3zyj_A Leucine-rich repeat-con 99.9 8.4E-24 2.9E-28 191.5 21.6 213 59-271 64-293 (440)
57 1ozn_A Reticulon 4 receptor; N 99.9 4.2E-23 1.4E-27 176.2 24.5 216 62-301 14-244 (285)
58 3zyi_A Leucine-rich repeat-con 99.9 1.2E-23 4.3E-28 191.0 21.7 213 59-271 75-304 (452)
59 3oja_A Leucine-rich immune mol 99.9 9.6E-25 3.3E-29 199.8 14.1 231 78-316 31-269 (487)
60 2z66_A Variable lymphocyte rec 99.9 1.3E-23 4.5E-28 181.1 18.2 239 59-297 28-289 (306)
61 4fcg_A Uncharacterized protein 99.9 1.2E-23 4.1E-28 183.1 17.5 228 58-299 80-318 (328)
62 1ozn_A Reticulon 4 receptor; N 99.9 7.4E-24 2.5E-28 180.9 15.2 190 58-247 31-237 (285)
63 2z80_A TOLL-like receptor 2, v 99.9 1.2E-23 4E-28 185.1 16.3 261 55-319 27-311 (353)
64 1ogq_A PGIP-2, polygalacturona 99.9 2.9E-24 9.9E-29 185.8 10.9 233 35-268 52-302 (313)
65 3rfs_A Internalin B, repeat mo 99.9 6E-24 2E-28 180.2 12.3 217 60-282 20-246 (272)
66 4g8a_A TOLL-like receptor 4; l 99.9 4.4E-22 1.5E-26 187.9 23.4 125 33-159 52-185 (635)
67 4fcg_A Uncharacterized protein 99.9 2.4E-22 8.4E-27 174.8 19.3 214 34-271 82-315 (328)
68 1p9a_G Platelet glycoprotein I 99.9 1.2E-21 4.3E-26 167.3 22.7 200 77-301 6-214 (290)
69 1h6t_A Internalin B; cell adhe 99.9 2.4E-23 8.1E-28 178.2 11.1 184 65-248 30-213 (291)
70 1wwl_A Monocyte differentiatio 99.9 5.5E-24 1.9E-28 184.0 6.9 237 54-297 38-311 (312)
71 2o6q_A Variable lymphocyte rec 99.9 2.6E-21 8.7E-26 163.8 23.0 196 82-299 17-222 (270)
72 1h6t_A Internalin B; cell adhe 99.9 8.7E-23 3E-27 174.6 14.0 193 81-273 24-216 (291)
73 1wwl_A Monocyte differentiatio 99.9 1.8E-23 6.3E-28 180.7 9.4 231 34-271 44-310 (312)
74 3rfs_A Internalin B, repeat mo 99.9 3.1E-22 1.1E-26 169.6 15.2 209 79-295 17-235 (272)
75 2z62_A TOLL-like receptor 4, v 99.9 3.1E-21 1.1E-25 163.8 21.3 215 63-299 11-241 (276)
76 1z7x_W Ribonuclease inhibitor; 99.9 3.6E-24 1.2E-28 194.9 1.7 174 146-319 198-408 (461)
77 1z7x_W Ribonuclease inhibitor; 99.9 7.6E-24 2.6E-28 192.8 2.7 305 15-319 3-380 (461)
78 1m9s_A Internalin B; cell inva 99.9 2.1E-22 7.2E-27 188.1 12.2 173 55-227 39-211 (605)
79 1m9s_A Internalin B; cell inva 99.9 9.3E-23 3.2E-27 190.5 9.8 193 58-250 20-212 (605)
80 1p9a_G Platelet glycoprotein I 99.9 1.3E-20 4.4E-25 161.0 21.3 194 54-248 5-208 (290)
81 2z62_A TOLL-like receptor 4, v 99.9 8.5E-21 2.9E-25 161.1 19.8 194 59-271 28-238 (276)
82 2o6q_A Variable lymphocyte rec 99.9 6.1E-20 2.1E-24 155.3 22.3 188 59-247 16-217 (270)
83 4glp_A Monocyte differentiatio 99.9 4E-21 1.4E-25 165.9 13.7 217 60-296 65-308 (310)
84 2ca6_A RAN GTPase-activating p 99.9 7.1E-23 2.4E-27 182.3 2.2 242 53-312 26-333 (386)
85 2xwt_C Thyrotropin receptor; s 99.9 9.7E-21 3.3E-25 157.3 14.1 197 71-292 23-236 (239)
86 1xeu_A Internalin C; cellular 99.8 4.8E-21 1.6E-25 161.4 10.2 172 57-229 17-188 (263)
87 1xeu_A Internalin C; cellular 99.8 4.4E-21 1.5E-25 161.6 9.0 171 101-272 17-187 (263)
88 2xwt_C Thyrotropin receptor; s 99.8 4.4E-20 1.5E-24 153.3 14.9 184 59-243 31-234 (239)
89 4glp_A Monocyte differentiatio 99.8 5.4E-20 1.9E-24 158.8 14.0 195 57-271 89-308 (310)
90 2ca6_A RAN GTPase-activating p 99.8 1.4E-21 4.6E-26 174.0 1.5 242 32-291 31-339 (386)
91 3m19_A Variable lymphocyte rec 99.8 3.9E-18 1.3E-22 142.6 21.6 171 104-297 15-194 (251)
92 3cvr_A Invasion plasmid antige 99.8 1.8E-18 6.3E-23 160.0 20.9 177 81-271 59-244 (571)
93 3cvr_A Invasion plasmid antige 99.8 1.7E-18 5.8E-23 160.3 20.6 176 60-249 60-244 (571)
94 4ezg_A Putative uncharacterize 99.8 2.1E-19 7.3E-24 144.7 12.4 147 56-202 41-192 (197)
95 3ogk_B Coronatine-insensitive 99.8 3.4E-21 1.2E-25 180.6 1.2 301 16-319 139-523 (592)
96 4ezg_A Putative uncharacterize 99.8 4.4E-19 1.5E-23 142.8 12.1 149 77-225 40-193 (197)
97 3m19_A Variable lymphocyte rec 99.8 1.8E-17 6.3E-22 138.5 19.9 166 81-248 14-192 (251)
98 2ast_B S-phase kinase-associat 99.8 3.1E-19 1.1E-23 155.6 8.0 233 60-297 48-308 (336)
99 3goz_A Leucine-rich repeat-con 99.8 2.2E-19 7.6E-24 158.3 6.9 219 53-271 16-298 (362)
100 2ast_B S-phase kinase-associat 99.8 2E-19 6.7E-24 156.9 6.1 208 83-292 49-282 (336)
101 3goz_A Leucine-rich repeat-con 99.8 2E-19 6.7E-24 158.6 4.4 235 63-297 2-299 (362)
102 3ogk_B Coronatine-insensitive 99.8 4.4E-20 1.5E-24 173.1 0.0 283 35-319 140-498 (592)
103 4ay9_X Follicle-stimulating ho 99.8 4.7E-17 1.6E-21 142.7 18.7 207 59-266 30-255 (350)
104 2p1m_B Transport inhibitor res 99.7 3.7E-20 1.3E-24 173.7 -3.3 85 232-319 429-516 (594)
105 1dce_A Protein (RAB geranylger 99.7 4.5E-21 1.6E-25 178.0 -10.8 125 192-316 442-567 (567)
106 4ay9_X Follicle-stimulating ho 99.7 2.3E-16 7.8E-21 138.3 18.5 224 62-291 12-255 (350)
107 3e6j_A Variable lymphocyte rec 99.7 6.9E-16 2.4E-20 127.1 19.6 165 149-315 21-196 (229)
108 1a9n_A U2A', U2A'; complex (nu 99.7 2.3E-17 8E-22 130.2 9.1 134 186-319 14-150 (176)
109 2v9t_B SLIT homolog 2 protein 99.7 9.8E-16 3.4E-20 125.3 17.7 150 151-303 15-173 (220)
110 2o6s_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 126.6 15.1 162 84-271 10-179 (208)
111 2xot_A Amphoterin-induced prot 99.7 3.7E-16 1.2E-20 137.6 15.9 175 106-302 21-209 (361)
112 2p1m_B Transport inhibitor res 99.7 1.8E-18 6E-23 162.2 0.6 104 212-319 371-491 (594)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-15 4.2E-20 124.8 17.1 132 170-302 33-173 (220)
114 2ell_A Acidic leucine-rich nuc 99.7 4E-16 1.4E-20 122.1 12.1 129 191-319 24-157 (168)
115 2je0_A Acidic leucine-rich nuc 99.7 4.2E-16 1.4E-20 119.5 11.5 129 190-318 16-149 (149)
116 2o6s_A Variable lymphocyte rec 99.6 1.5E-14 5.1E-19 117.2 18.7 159 128-295 10-178 (208)
117 1dce_A Protein (RAB geranylger 99.6 4.9E-19 1.7E-23 164.4 -10.9 120 170-289 442-567 (567)
118 2xot_A Amphoterin-induced prot 99.6 5.9E-15 2E-19 129.9 14.7 164 84-248 21-202 (361)
119 2v9t_B SLIT homolog 2 protein 99.6 2.1E-14 7.1E-19 117.4 16.2 140 106-247 14-164 (220)
120 2v70_A SLIT-2, SLIT homolog 2 99.6 2.3E-14 8E-19 117.1 15.6 143 106-271 14-167 (220)
121 3e6j_A Variable lymphocyte rec 99.6 4.1E-14 1.4E-18 116.4 17.1 146 105-271 21-173 (229)
122 3sb4_A Hypothetical leucine ri 99.6 7.8E-15 2.7E-19 127.4 10.3 98 212-315 225-327 (329)
123 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 4E-19 113.7 9.9 132 168-299 23-164 (168)
124 1a9n_A U2A', U2A'; complex (nu 99.6 4.7E-15 1.6E-19 116.9 7.3 130 53-182 13-153 (176)
125 2wfh_A SLIT homolog 2 protein 99.6 1.1E-13 3.9E-18 110.6 15.2 130 172-303 13-147 (193)
126 1w8a_A SLIT protein; signaling 99.6 1.2E-13 4.1E-18 110.4 15.0 129 172-302 11-146 (192)
127 2je0_A Acidic leucine-rich nuc 99.5 3E-14 1E-18 109.0 9.8 124 168-291 16-149 (149)
128 1ds9_A Outer arm dynein; leuci 99.5 1.9E-16 6.5E-21 127.5 -3.2 132 186-317 43-182 (198)
129 2o6r_A Variable lymphocyte rec 99.5 7.5E-13 2.6E-17 104.3 16.6 127 171-299 9-141 (177)
130 3sb4_A Hypothetical leucine ri 99.5 1.1E-13 3.8E-18 120.1 11.9 227 58-289 48-328 (329)
131 4fdw_A Leucine rich hypothetic 99.4 1E-11 3.5E-16 110.4 19.1 227 54-293 131-381 (401)
132 1w8a_A SLIT protein; signaling 99.4 3.7E-12 1.3E-16 101.7 13.4 119 62-181 11-138 (192)
133 2o6r_A Variable lymphocyte rec 99.4 6.4E-12 2.2E-16 98.9 14.0 120 61-181 9-136 (177)
134 2wfh_A SLIT homolog 2 protein 99.4 3.9E-12 1.3E-16 101.6 12.9 119 62-181 13-138 (193)
135 4fdw_A Leucine rich hypothetic 99.4 3.6E-11 1.2E-15 106.9 19.3 243 57-316 111-377 (401)
136 2r9u_A Variable lymphocyte rec 99.3 2.7E-11 9.3E-16 95.0 14.0 104 194-299 15-122 (174)
137 1ds9_A Outer arm dynein; leuci 99.3 8.4E-15 2.9E-19 117.8 -6.5 106 54-159 43-152 (198)
138 3g39_A Variable lymphocyte rec 99.3 2.5E-11 8.5E-16 94.9 13.4 105 193-299 11-119 (170)
139 4b8c_D Glucose-repressible alc 99.3 4.4E-13 1.5E-17 128.2 3.7 147 59-205 173-330 (727)
140 4b8c_D Glucose-repressible alc 99.3 9.9E-12 3.4E-16 118.8 9.8 107 187-295 220-329 (727)
141 2r9u_A Variable lymphocyte rec 99.2 2.1E-10 7.1E-15 89.9 11.2 98 61-160 14-118 (174)
142 3g39_A Variable lymphocyte rec 99.2 3E-10 1E-14 88.6 11.2 100 60-160 10-115 (170)
143 2ifg_A High affinity nerve gro 99.1 5.9E-10 2E-14 97.2 12.5 106 195-302 12-123 (347)
144 4fs7_A Uncharacterized protein 99.1 2.4E-09 8.2E-14 95.1 16.5 250 52-314 87-393 (394)
145 4fs7_A Uncharacterized protein 99.1 7.9E-09 2.7E-13 91.7 19.4 274 3-287 59-393 (394)
146 3un9_A NLR family member X1; l 99.0 1.8E-11 6.3E-16 107.7 -0.0 149 124-272 71-254 (372)
147 4gt6_A Cell surface protein; l 99.0 7.3E-08 2.5E-12 85.5 22.3 120 187-316 261-385 (394)
148 3un9_A NLR family member X1; l 99.0 4.7E-11 1.6E-15 105.1 0.6 154 146-299 71-256 (372)
149 4gt6_A Cell surface protein; l 98.9 2.7E-07 9.2E-12 81.8 22.1 254 53-318 57-366 (394)
150 2ifg_A High affinity nerve gro 98.9 3.4E-09 1.2E-13 92.4 8.0 95 153-248 14-116 (347)
151 3rw6_A Nuclear RNA export fact 98.7 2.4E-08 8.1E-13 83.1 8.3 85 232-317 167-259 (267)
152 3e4g_A ATP synthase subunit S, 98.7 1.3E-08 4.3E-13 78.9 4.2 101 212-313 60-171 (176)
153 2ra8_A Uncharacterized protein 98.6 3.5E-08 1.2E-12 86.2 5.0 150 121-271 135-321 (362)
154 4h09_A Hypothetical leucine ri 98.6 1.3E-05 4.5E-10 70.4 21.2 102 187-292 236-343 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 6.8E-08 2.3E-12 76.3 5.4 113 186-298 31-167 (185)
156 2ra8_A Uncharacterized protein 98.5 9.4E-08 3.2E-12 83.5 6.4 127 100-227 169-321 (362)
157 1io0_A Tropomodulin; LRR prote 98.5 3.5E-08 1.2E-12 78.0 3.1 111 209-319 32-161 (185)
158 3e4g_A ATP synthase subunit S, 98.4 1.1E-07 3.6E-12 73.7 3.6 82 235-319 61-149 (176)
159 3rw6_A Nuclear RNA export fact 98.2 1.1E-06 3.9E-11 72.9 5.0 78 211-288 168-257 (267)
160 4h09_A Hypothetical leucine ri 98.2 0.00042 1.4E-08 60.7 21.8 123 186-316 212-340 (379)
161 3rfe_A Platelet glycoprotein I 97.7 0.00019 6.6E-09 52.7 8.3 64 239-304 12-77 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00039 1.3E-08 54.7 6.5 108 187-294 37-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00047 1.6E-08 54.2 2.7 62 231-292 66-136 (197)
164 3rfe_A Platelet glycoprotein I 96.3 0.011 3.8E-07 43.1 6.6 53 217-270 12-68 (130)
165 2lz0_A Uncharacterized protein 46.3 29 0.00098 23.4 4.3 12 77-88 16-27 (100)
166 2lz0_A Uncharacterized protein 45.6 27 0.00093 23.5 4.1 43 224-267 7-53 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.5e-34 Score=251.79 Aligned_cols=295 Identities=25% Similarity=0.332 Sum_probs=224.1
Q ss_pred CceEEEEEeeeccc----cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccccccCCCCCEEEccC
Q psy14728 15 DNLVTLNVEAVENT----HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYD 90 (319)
Q Consensus 15 ~~l~~l~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~ 90 (319)
++++.++++..... ......++.++++.+...... .+..+++|++|++++|.+..++.+..+++|++|++++
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~----~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS----PLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNE 119 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTT
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccccch----hhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcC
Confidence 34455555443322 222334555666555443321 1667777777777777777776677777777777777
Q ss_pred CCccCccCCCCCCCCcEEEccCC-CCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccCCCC
Q psy14728 91 NQLTVIENLDTLINLEILDLSFN-RIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLT 169 (319)
Q Consensus 91 ~~~~~~~~~~~l~~L~~L~l~~~-~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~ 169 (319)
|.++.++.+..+++|++|++++| ....++.+..+++|++|++++|.+...+.+..+++|++|++++|.+..++.+..++
T Consensus 120 n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~ 199 (347)
T 4fmz_A 120 DNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLT 199 (347)
T ss_dssp SCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCT
T ss_pred CcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCC
Confidence 77776665777777777777777 34445556777777778877777777666777788888888888777666677788
Q ss_pred CccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCC
Q psy14728 170 NLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISI 249 (319)
Q Consensus 170 ~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 249 (319)
+|+.+++++|.+.+.+.+..+++|++|++++|+++.++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.
T Consensus 200 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 200 SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred ccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCC
Confidence 88888888888777766788888999999999888877788889999999999998888888888999999999999988
Q ss_pred ccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 250 IQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 250 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
++.+..+++|++|++++|++++. .+..+..+++|+.|++++|+++..+. +..+++|+.|++++|
T Consensus 280 ~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 280 ISVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADFANQ 343 (347)
T ss_dssp CGGGGGCTTCSEEECCSSCCCGG-GHHHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESSSCC
T ss_pred ChhhcCCCCCCEEECcCCcCCCc-ChhHhhccccCCEEEccCCccccccC-----hhhhhccceeehhhh
Confidence 88888899999999999998873 44667889999999999999988876 567999999999876
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.8e-33 Score=243.53 Aligned_cols=276 Identities=26% Similarity=0.341 Sum_probs=237.8
Q ss_pred ccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCC
Q psy14728 34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFN 113 (319)
Q Consensus 34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 113 (319)
.++.++++.+....- ..+..+++|++|++++|.+++++.+..+++|++|++++|.++.++.+..+++|++|++++|
T Consensus 45 ~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 45 SITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED 120 (347)
T ss_dssp TCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTS
T ss_pred cccEEEEeCCccccc----hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCC
Confidence 355555555444321 3477889999999999998888778889999999999998888888888999999999999
Q ss_pred CCccccCCCCCCCccEEEccCCc-ccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCC
Q psy14728 114 RIREIKGLDHLANLEKLYLCSNK-ISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTK 192 (319)
Q Consensus 114 ~~~~l~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~ 192 (319)
.+..++.+..+++|+.|++++|. ....+.+..+++|++|+++++.+.....+..+++|++|++++|.+.+++.+..+++
T Consensus 121 ~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~ 200 (347)
T 4fmz_A 121 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS 200 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTT
T ss_pred cccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCc
Confidence 98888778888999999999984 45556788899999999999988877778889999999999999888877888999
Q ss_pred CCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q psy14728 193 LNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDW 272 (319)
Q Consensus 193 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 272 (319)
|+.+++++|.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|+++++
T Consensus 201 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 280 (347)
T 4fmz_A 201 LHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI 280 (347)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred cceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC
Confidence 99999999999887778899999999999999999888999999999999999999998899999999999999999985
Q ss_pred cccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 273 NTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 273 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
..+..+++|+.|++++|++...+. ..+..+++|+.|++++|
T Consensus 281 ---~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 281 ---SVLNNLSQLNSLFLNNNQLGNEDM---EVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCGGGH---HHHHTCTTCSEEECCSS
T ss_pred ---hhhcCCCCCCEEECcCCcCCCcCh---hHhhccccCCEEEccCC
Confidence 457889999999999999987654 35678999999999986
No 3
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3e-32 Score=248.73 Aligned_cols=256 Identities=35% Similarity=0.425 Sum_probs=116.5
Q ss_pred ccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCcccc---------------
Q psy14728 55 ESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK--------------- 119 (319)
Q Consensus 55 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--------------- 119 (319)
+..+++|++|+++++.+.+++.+..+++|++|++++|.++.++.+..+++|++|++++|.+..++
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 165 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCC
Confidence 44444444444444444444334444444444444444443333444444444444444333322
Q ss_pred ------CCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCC
Q psy14728 120 ------GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKL 193 (319)
Q Consensus 120 ------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L 193 (319)
.+..+++|+.|++++|.++.++.+..+++|++|++++|.+.....+..+++|+.|++++|.+.+++.+..+++|
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L 245 (466)
T 1o6v_A 166 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 245 (466)
T ss_dssp SCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred cccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCC
Confidence 23334444444444444444444444444444444444443333333444444444444444444334444444
Q ss_pred CEEECCCCC----------------------CCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCcc
Q psy14728 194 NILSLQCNR----------------------LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQ 251 (319)
Q Consensus 194 ~~L~l~~~~----------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 251 (319)
+.|++++|. +..++.+..+++|+.|++++|++++++.+..+++|+.|++++|.++++.
T Consensus 246 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 246 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp SEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG
T ss_pred CEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCch
Confidence 444444444 4443334444444444444444444444444444444444444444443
Q ss_pred ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEeccc
Q psy14728 252 NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL 318 (319)
Q Consensus 252 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~ 318 (319)
.+..+++|++|++++|++++. ..+..+++|+.|++++|++...+. +..+++|+.|++++
T Consensus 326 ~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 326 PVSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTP-----LANLTRITQLGLND 384 (466)
T ss_dssp GGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGG-----GTTCTTCCEEECCC
T ss_pred hhccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccch-----hhcCCCCCEEeccC
Confidence 344445555555555544442 234445555555555555554433 34455555555544
No 4
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.3e-31 Score=244.57 Aligned_cols=257 Identities=33% Similarity=0.384 Sum_probs=188.7
Q ss_pred cccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEcc
Q psy14728 54 EESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC 133 (319)
Q Consensus 54 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~ 133 (319)
.+..+++|++|++++|.+.+++.+..+++|++|++++|.++.++.+.++++|++|++++|.+..++.+..+++|++|+++
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 142 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECC
Confidence 47789999999999999999888999999999999999998776699999999999999999998889999999999999
Q ss_pred CCcccccCCCC---------------------CCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCC
Q psy14728 134 SNKISKIENVD---------------------HLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTK 192 (319)
Q Consensus 134 ~~~~~~~~~~~---------------------~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~ 192 (319)
+|.++.++.+. .+++|++|++++|.+..++.+..+++|++|++++|.+.+...+..+++
T Consensus 143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 222 (466)
T 1o6v_A 143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 222 (466)
T ss_dssp EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTT
T ss_pred CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCC
Confidence 99887765443 455666666666666655556667777777777777666655666777
Q ss_pred CCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q psy14728 193 LNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDW 272 (319)
Q Consensus 193 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 272 (319)
|++|++++|++..++.+..+++|+.|++++|.+++++.+..+++|++|++++|.++.++.+..+++|++|++++|++.+.
T Consensus 223 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ 302 (466)
T 1o6v_A 223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 302 (466)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC
T ss_pred CCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCc
Confidence 77788877777776666677777777777777776655666666777777776666655555666666666666666553
Q ss_pred cccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEeccc
Q psy14728 273 NTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL 318 (319)
Q Consensus 273 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~ 318 (319)
.. +..+++|+.|++++|++...+. +..+++|+.|++++
T Consensus 303 ~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 303 SP---ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYN 340 (466)
T ss_dssp GG---GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCS
T ss_pred hh---hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECCC
Confidence 21 4455555666666655555443 23455555555544
No 5
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=5.4e-29 Score=226.16 Aligned_cols=210 Identities=26% Similarity=0.344 Sum_probs=105.3
Q ss_pred cccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEcc
Q psy14728 54 EESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC 133 (319)
Q Consensus 54 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~ 133 (319)
.+..+++|++|+++++.+++++.+..+++|++|++++|.++.++ ++.+++|++|++++|.++.++ +..+++|++|+++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCD 114 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECC
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECC
Confidence 34445555555555555555555555555555555555555443 455555555555555555543 4455555555555
Q ss_pred CCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCC-CccccCCCCCCCCCEEECCCCCCCCCcCCcCC
Q psy14728 134 SNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK-ISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212 (319)
Q Consensus 134 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 212 (319)
+|.+++++ +..+++|++|++++|.+..++ ++.+++|++|++++|. +..+ .+..+++|+.|++++|+++.++ +..+
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~-l~~l 190 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELD-VSQN 190 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCC-CTTC
T ss_pred CCcCCeec-CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceec-cccC
Confidence 55555543 455555555555555554432 4445555555555552 2222 3444445555555555554443 4444
Q ss_pred CCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCC
Q psy14728 213 TNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 271 (319)
++|+.|++++|.+++++ +..+++|+.|++++|++++++ +..+++|++|++++|++++
T Consensus 191 ~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp TTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC
T ss_pred CCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCC
Confidence 45555555555544442 444445555555555544444 4444455555555554444
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=5.2e-29 Score=222.24 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=49.0
Q ss_pred ccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccC--CCCCCCcc
Q psy14728 55 ESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKG--LDHLANLE 128 (319)
Q Consensus 55 ~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~ 128 (319)
+..+++|++|+++++.+..++ .+..+++|++|++++|.++.+ ..++.+++|++|++++|.+..++. +..+++|+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 344455555555555444432 244455555555555544432 124444555555555555444442 34445555
Q ss_pred EEEccCCcccccC--CCCCCCCccEEEccCCcC
Q psy14728 129 KLYLCSNKISKIE--NVDHLKKLKVLELGDNKI 159 (319)
Q Consensus 129 ~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~ 159 (319)
+|++++|.++.++ .+..+++|++|++++|.+
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 5555555444432 244444555555544444
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=6.1e-29 Score=221.80 Aligned_cols=294 Identities=18% Similarity=0.212 Sum_probs=200.8
Q ss_pred ccCCCceEEEEEeeecccc------ccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCC
Q psy14728 11 EVDNDNLVTLNVEAVENTH------GNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTT 82 (319)
Q Consensus 11 ~~~~~~l~~l~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~ 82 (319)
.+...+++.+.++...... .....++.++++.+......+ ..+..+++|++|++++|.+..++ .+..+++
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT--YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh--hhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 4445566666665543321 122346666666665544332 46677777777777777777664 2667777
Q ss_pred CCEEEccCCCccCccC--CCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCc
Q psy14728 83 LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNK 158 (319)
Q Consensus 83 L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 158 (319)
|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|++++|.++.. .+..+++|+.++++++.
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeeccccc
Confidence 7777777777775543 567777777777777777664 366777777777777777665 34566777777777776
Q ss_pred CcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCcc--ccCCCCC
Q psy14728 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE--NLLSNEK 236 (319)
Q Consensus 159 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~ 236 (319)
+..+ ...++|+.|++++|.+..++. ...++|+.|++++|.++..+.+..+++|++|++++|.+++++ .+..+++
T Consensus 198 l~~~---~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 198 LSTL---AIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp CSEE---ECCSSCSEEECCSSCCCEEEC-CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred cccc---CCCCcceEEECCCCeeeeccc-cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 5433 234567777777777766532 234678888888888877777777888888888888877652 3677788
Q ss_pred ccEEEccCCCCCCccc-cccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEe
Q psy14728 237 LETLDVAYNKISIIQN-IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQID 315 (319)
Q Consensus 237 L~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~ 315 (319)
|++|++++|.++.++. +..+++|++|++++|+++..+ ..+..+++|+.|++++|+++..+ ...+++|+.|+
T Consensus 274 L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~L~~L~ 345 (390)
T 3o6n_A 274 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLT 345 (390)
T ss_dssp CCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEE
T ss_pred CCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecC--ccccccCcCCEEECCCCccceeC------chhhccCCEEE
Confidence 8888888888876643 456788888888888877633 44567788888888888887764 34678888888
Q ss_pred cccC
Q psy14728 316 ATLA 319 (319)
Q Consensus 316 ~~~C 319 (319)
++++
T Consensus 346 l~~N 349 (390)
T 3o6n_A 346 LSHN 349 (390)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 7753
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=5e-29 Score=228.11 Aligned_cols=265 Identities=27% Similarity=0.301 Sum_probs=153.4
Q ss_pred cCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCccC--CCCCCCCcEEEc
Q psy14728 35 LDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDL 110 (319)
Q Consensus 35 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l 110 (319)
++.++++.+...+..+ ..+..+++|++|++++|.+..+. .+..+++|++|++++|+++.++. +.++++|++|++
T Consensus 34 l~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQ--DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp CSEEECCSSCCCEECT--TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CcEEECCCCccceECH--hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 3444444444433322 44555666666666666555442 35556666666666665554332 455566666666
Q ss_pred cCCCCcccc--CCCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccc
Q psy14728 111 SFNRIREIK--GLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRI 184 (319)
Q Consensus 111 ~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~ 184 (319)
++|.+..++ .+..+++|++|++++|.++.+. .+..+++|++|++++|.+..++ .+..+++|+.|++.+|.+..+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 666555442 3555556666666666555432 4555555666666555554332 244455555555555544433
Q ss_pred --cCCCCCC------------------------CCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc--cCCC
Q psy14728 185 --DNLASLT------------------------KLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN--LLSN 234 (319)
Q Consensus 185 --~~l~~~~------------------------~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~ 234 (319)
..+..++ +|++|++++|+++.++ .+..+++|+.|++++|.++.++. +..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 1233333 5556666666665554 25666777777777777776543 6666
Q ss_pred CCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHH
Q psy14728 235 EKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRR 302 (319)
Q Consensus 235 ~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 302 (319)
++|++|++++|.++.+ ..+..+++|++|++++|+++..+ ...+..+++|+.|++++|++.+++...|
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE-ESVFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC-GGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC-HhHcCCCcccCEEEccCCCccCccchHh
Confidence 7777777777777654 34667777777777777777643 2456667777777777777777776544
No 9
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=5.3e-28 Score=219.62 Aligned_cols=269 Identities=21% Similarity=0.234 Sum_probs=151.1
Q ss_pred cccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccC
Q psy14728 33 MSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSF 112 (319)
Q Consensus 33 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 112 (319)
..++.++++.+...+. ..+..+++|++|++++|.+++++ ++.+++|++|++++|.++.++ ++.+++|++|++++
T Consensus 42 ~~L~~L~Ls~n~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM----TGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDT 115 (457)
T ss_dssp TTCCEEECCSSCCCCC----TTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCS
T ss_pred CCCCEEEccCCCcccC----hhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCC
Confidence 3344455555444332 13566667777777777666664 666667777777766666553 66666677777766
Q ss_pred CCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCC
Q psy14728 113 NRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTK 192 (319)
Q Consensus 113 ~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~ 192 (319)
|.+..++ +..+++|++|++++|.+++++ +..+++|++|++++|.......+..+++|++|++++|.+++++ +..+++
T Consensus 116 N~l~~l~-~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~ 192 (457)
T 3bz5_A 116 NKLTKLD-VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKL 192 (457)
T ss_dssp SCCSCCC-CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-CTTCTT
T ss_pred CcCCeec-CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-cccCCC
Confidence 6666654 566666666666666666653 5555666666666553221113445555555555555555544 444555
Q ss_pred CCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCcc---------------------
Q psy14728 193 LNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQ--------------------- 251 (319)
Q Consensus 193 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------- 251 (319)
|+.|++++|+++.++ +..+++|+.|++++|+++++| +..+++|+.|++++|.+++++
T Consensus 193 L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 193 LNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID 270 (457)
T ss_dssp CCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred CCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEE
Confidence 555555555554442 444455555555555555544 444455555555555444322
Q ss_pred ----------ccccCCCCcEEEcCCCcCCCCcc-----c--ccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEE
Q psy14728 252 ----------NIAHLTELQEFWINDNQVSDWNT-----V--NVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQI 314 (319)
Q Consensus 252 ----------~l~~~~~L~~L~l~~n~~~~~~~-----~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l 314 (319)
.+..+++|++|++++|...+... . -.+.++++|+.|++++|.++..+ +..|++|+.|
T Consensus 271 l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~------l~~l~~L~~L 344 (457)
T 3bz5_A 271 LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD------VSHNTKLKSL 344 (457)
T ss_dssp CTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC------CTTCTTCSEE
T ss_pred CCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc------cccCCcCcEE
Confidence 12344556666666664322100 0 01456677788888888777752 4567888888
Q ss_pred eccc
Q psy14728 315 DATL 318 (319)
Q Consensus 315 ~~~~ 318 (319)
++++
T Consensus 345 ~l~~ 348 (457)
T 3bz5_A 345 SCVN 348 (457)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 7764
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=3.7e-28 Score=228.68 Aligned_cols=127 Identities=24% Similarity=0.367 Sum_probs=54.0
Q ss_pred CCCCCccEEEccCCcCcCc-cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCC-Cc--CCcCCCCCCe
Q psy14728 144 DHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRT-IE--NLEALTNLTQ 217 (319)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~-~~--~~~~~~~L~~ 217 (319)
..+++|++|++++|.+..+ ..+..+++|++|++++|.+... ..+..+++|++|++++|.+.. ++ .+..+++|++
T Consensus 275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 3344555555555544433 2344455555555555554433 123344444444444443321 11 1334444555
Q ss_pred EeccCCcCcCcc----ccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCC
Q psy14728 218 LYLSENGLTTIE----NLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVS 270 (319)
Q Consensus 218 L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~ 270 (319)
|++++|.+++.+ .+..+++|++|++++|.+..+ ..+..+++|++|++++|++.
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 555544444331 234444444444444444321 12333344444444444433
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=3.6e-28 Score=222.41 Aligned_cols=278 Identities=21% Similarity=0.269 Sum_probs=204.1
Q ss_pred CceEEEEEeeeccc------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccc--cccCCCCCEE
Q psy14728 15 DNLVTLNVEAVENT------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIEN--IHMLTTLKEL 86 (319)
Q Consensus 15 ~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~L~~L 86 (319)
.+++.++++.+... ......++.++++.+...+..+ ..+..+++|++|++++|.++.++. +..+++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP--GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh--hhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 46677777665543 2334457777777776655444 678889999999999999888763 7888999999
Q ss_pred EccCCCccCc--cCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCc
Q psy14728 87 ELYDNQLTVI--ENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIR 160 (319)
Q Consensus 87 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 160 (319)
++++|+++.+ ..+..+++|++|++++|.+..++ .+..+++|+.|++++|.++.++ .+..+++|+.|+++++.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 9999988743 34788888999999888887664 5777888888888888877654 3566677777777766654
Q ss_pred Ccc--ccCCCC------------------------CccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCCCcC--Cc
Q psy14728 161 IIE--NLDGLT------------------------NLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTIEN--LE 210 (319)
Q Consensus 161 ~~~--~l~~~~------------------------~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~~~~--~~ 210 (319)
.+. .+..++ +|++|++++|.+..++ .+..+++|+.|++++|.+..++. +.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 221 233333 5566666666666654 47788999999999999987643 78
Q ss_pred CCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcE
Q psy14728 211 ALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT 286 (319)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 286 (319)
.+++|+.|++++|++++++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.+........+ ......
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~--~~~~~~ 347 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV--FRRRWR 347 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH--HTTTTS
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH--Hhhhhc
Confidence 8999999999999999874 4889999999999999999864 478899999999999998864322222 122333
Q ss_pred EEcCCCcCcC
Q psy14728 287 IYLDRNPVAQ 296 (319)
Q Consensus 287 L~l~~n~~~~ 296 (319)
+.+.++...+
T Consensus 348 ~~~~~~~~~C 357 (477)
T 2id5_A 348 LNFNRQQPTC 357 (477)
T ss_dssp SCCTTCCCBE
T ss_pred cccCccCcee
Confidence 4455555554
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.2e-28 Score=229.69 Aligned_cols=256 Identities=20% Similarity=0.222 Sum_probs=132.0
Q ss_pred hcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCccccC--CCCCCC
Q psy14728 53 DEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIKG--LDHLAN 126 (319)
Q Consensus 53 ~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~ 126 (319)
..+..+++|+.|++++|.+.+++ .+..+++|++|++++|.++.++ .++++++|++|++++|.+..+|. +..+++
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCC
Confidence 34556666666666666666553 3566666666666666665432 25666666666666666666553 456666
Q ss_pred ccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCc-------------------ccc
Q psy14728 127 LEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS-------------------RID 185 (319)
Q Consensus 127 L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~-------------------~~~ 185 (319)
|++|++++|.+++++ .+..+++|++|++++|.+..++ +..+++|+.|++++|.+. .++
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence 666666666666543 4566666666666666554332 233344444444433332 221
Q ss_pred CCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCccc-cccCCCCcEE
Q psy14728 186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQN-IAHLTELQEF 262 (319)
Q Consensus 186 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-l~~~~~L~~L 262 (319)
.. ..++|+.|++++|.++.++.+..+++|+.|++++|.+++++ .+..+++|+.|++++|.++.++. +..+++|++|
T Consensus 228 ~~-~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 306 (597)
T 3oja_B 228 GP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306 (597)
T ss_dssp CS-CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEE
T ss_pred cc-cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEE
Confidence 10 11344555555555544444445555555555555554431 24445555555555555544332 2334555555
Q ss_pred EcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEeccc
Q psy14728 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL 318 (319)
Q Consensus 263 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~ 318 (319)
++++|.++.. +..+..+++|+.|++++|+++..+ ...++.|+.|++++
T Consensus 307 ~Ls~N~l~~i--~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 307 DLSHNHLLHV--ERNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSH 354 (597)
T ss_dssp ECCSSCCCCC--GGGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCS
T ss_pred ECCCCCCCcc--CcccccCCCCCEEECCCCCCCCcC------hhhcCCCCEEEeeC
Confidence 5555555432 123344455555555555544432 23344555555443
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.5e-28 Score=232.22 Aligned_cols=298 Identities=21% Similarity=0.274 Sum_probs=227.2
Q ss_pred CCCceEEEEEeeeccc------cccccccCCCCcchhh-hhc-cCchhhcccc------cccceEEEecCCcccCccc--
Q psy14728 13 DNDNLVTLNVEAVENT------HGNQMSLDNPDEESEA-ETT-ESKAEDEESK------EVCIERLLLRWNLIKKIEN-- 76 (319)
Q Consensus 13 ~~~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~-~~~-~~~~~~~~~~------~~~L~~L~l~~~~~~~l~~-- 76 (319)
...++++++++.+... ..+...++.++++.+. ..+ ..+ ..+.. +++|+.|++++|.++.+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp--~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK--DDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH--HHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch--HHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 4677888888876422 3344567777777776 544 333 44444 4889999999998888875
Q ss_pred -cccCCCCCEEEccCCCcc-CccCCCCCCCCcEEEccCCCCcccc-CCCCCCC-ccEEEccCCcccccCC-CCC--CCCc
Q psy14728 77 -IHMLTTLKELELYDNQLT-VIENLDTLINLEILDLSFNRIREIK-GLDHLAN-LEKLYLCSNKISKIEN-VDH--LKKL 149 (319)
Q Consensus 77 -~~~~~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~l~~-L~~L~l~~~~~~~~~~-~~~--~~~L 149 (319)
+..+++|++|++++|+++ .++.+..+++|++|++++|.+..+| .+..+++ |++|++++|.++.+|. +.. +++|
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence 788899999999999887 6667888889999999999888776 4777888 9999999998887763 343 3489
Q ss_pred cEEEccCCcCcCc--cccC-------CCCCccEEEcCCCCCccccC--CCCCCCCCEEECCCCCCCCCcC--CcC-----
Q psy14728 150 KVLELGDNKIRII--ENLD-------GLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEA----- 211 (319)
Q Consensus 150 ~~L~l~~~~~~~~--~~l~-------~~~~L~~L~l~~~~l~~~~~--l~~~~~L~~L~l~~~~~~~~~~--~~~----- 211 (319)
++|++++|.+... ..+. .+++|++|++++|.+..++. +..+++|+.|++++|+++.+|. +..
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 9999998887532 3344 66789999999998887643 4568889999999998887653 222
Q ss_pred --CCCCCeEeccCCcCcCccc-cC--CCCCccEEEccCCCCCCcc-ccccCCCCcEEEcC------CCcCCCCccccccc
Q psy14728 212 --LTNLTQLYLSENGLTTIEN-LL--SNEKLETLDVAYNKISIIQ-NIAHLTELQEFWIN------DNQVSDWNTVNVLE 279 (319)
Q Consensus 212 --~~~L~~L~l~~~~~~~~~~-~~--~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~------~n~~~~~~~~~~~~ 279 (319)
+++|+.|++++|.++.+|. +. .+++|++|++++|.++.++ .+..+++|++|+++ +|++.+ ..+..+.
T Consensus 485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~-~~p~~l~ 563 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR-EWPEGIT 563 (636)
T ss_dssp TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCC-CCCTTGG
T ss_pred cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccc-cChHHHh
Confidence 2389999999999988875 54 8899999999999988764 57888999999995 455555 3456778
Q ss_pred CCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 280 NNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 280 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
.+++|+.|++++|++...|.. ..++|+.||+++|
T Consensus 564 ~l~~L~~L~Ls~N~l~~ip~~------~~~~L~~L~Ls~N 597 (636)
T 4eco_A 564 LCPSLTQLQIGSNDIRKVNEK------ITPNISVLDIKDN 597 (636)
T ss_dssp GCSSCCEEECCSSCCCBCCSC------CCTTCCEEECCSC
T ss_pred cCCCCCEEECCCCcCCccCHh------HhCcCCEEECcCC
Confidence 889999999999999887773 2388999998875
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.3e-28 Score=232.66 Aligned_cols=281 Identities=19% Similarity=0.255 Sum_probs=196.4
Q ss_pred cccccCCCCcchhhhhccCchhhcccccccceEEEecCCc-ccC--cc-ccccC------CCCCEEEccCCCccCccC--
Q psy14728 31 NQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNL-IKK--IE-NIHML------TTLKELELYDNQLTVIEN-- 98 (319)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--l~-~~~~~------~~L~~L~l~~~~~~~~~~-- 98 (319)
+...++.++++.+...+..+ ..+..+++|+.|++++|. +++ +| .++.+ ++|++|++++|+++.++.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLP--TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCC--TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred ccCCCCEEEecCCcCCccCh--HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 34456666666666665555 666777777777777776 664 44 24443 777777777777765543
Q ss_pred -CCCCCCCcEEEccCCCCc-cccCCCCCCCccEEEccCCcccccC-CCCCCCC-ccEEEccCCcCcCccc-cCC--CCCc
Q psy14728 99 -LDTLINLEILDLSFNRIR-EIKGLDHLANLEKLYLCSNKISKIE-NVDHLKK-LKVLELGDNKIRIIEN-LDG--LTNL 171 (319)
Q Consensus 99 -~~~l~~L~~L~l~~~~~~-~l~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~-L~~L~l~~~~~~~~~~-l~~--~~~L 171 (319)
++.+++|++|++++|.+. .+|.+..+++|+.|++++|.++.++ .+..+++ |++|++++|.+..++. +.. +++|
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence 677777788888777777 6676777777788888877777665 5667777 8888888877764443 333 3378
Q ss_pred cEEEcCCCCCccc--cCCC-------CCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--cCC-----
Q psy14728 172 EELYLGKNKISRI--DNLA-------SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLS----- 233 (319)
Q Consensus 172 ~~L~l~~~~l~~~--~~l~-------~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~----- 233 (319)
++|++++|.+.+. ..+. .+++|+.|++++|+++.+|. +..+++|+.|++++|+++.+|. +..
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 8888888877653 2344 56678888888888887654 4567888888888888887653 222
Q ss_pred --CCCccEEEccCCCCCCccc-cc--cCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCC------CcCc-CChhhH
Q psy14728 234 --NEKLETLDVAYNKISIIQN-IA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDR------NPVA-QDPNYR 301 (319)
Q Consensus 234 --~~~L~~L~l~~~~~~~~~~-l~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~------n~~~-~~~~~~ 301 (319)
+++|+.|++++|.++.++. +. .+++|++|++++|++++ .+..+..+++|+.|++++ |.+. ..|.
T Consensus 485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-- 560 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-- 560 (636)
T ss_dssp TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--
T ss_pred cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChH--
Confidence 2288888888888886643 44 78888888888888887 346677888888888854 4444 3343
Q ss_pred HHHHHhCCceEEEecccC
Q psy14728 302 RKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 302 ~~~~~~~~~L~~l~~~~C 319 (319)
.+..+++|+.|++++|
T Consensus 561 --~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 561 --GITLCPSLTQLQIGSN 576 (636)
T ss_dssp --TGGGCSSCCEEECCSS
T ss_pred --HHhcCCCCCEEECCCC
Confidence 2567888998888875
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=9.3e-29 Score=224.92 Aligned_cols=283 Identities=23% Similarity=0.295 Sum_probs=168.4
Q ss_pred CceEEEEEeeeccc------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCc-c-ccccCCCCCEE
Q psy14728 15 DNLVTLNVEAVENT------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKI-E-NIHMLTTLKEL 86 (319)
Q Consensus 15 ~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~-~~~~~~~L~~L 86 (319)
+++++++++.+... ..+...++.++++.+...+..+ ...+..+++|++|++++|.+..+ + .+..+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-cccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 45666666655433 2233345555665554432221 24566677777777777776654 2 36677777777
Q ss_pred EccCCCccC--ccC--CCCCCCCcEEEccCCCCccc-cC--CCCCCCccEEEccCCcccccC--CCC-------------
Q psy14728 87 ELYDNQLTV--IEN--LDTLINLEILDLSFNRIREI-KG--LDHLANLEKLYLCSNKISKIE--NVD------------- 144 (319)
Q Consensus 87 ~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~~~~l-~~--~~~l~~L~~L~l~~~~~~~~~--~~~------------- 144 (319)
++++|.++. +.. +..+++|++|++++|.+..+ |. +..+++|++|++++|.++... .+.
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 777777664 333 66677777777777777655 32 556777777777777665532 111
Q ss_pred ---------------------CCCCccEEEccCCcCcCc--cc-------------------------------------
Q psy14728 145 ---------------------HLKKLKVLELGDNKIRII--EN------------------------------------- 164 (319)
Q Consensus 145 ---------------------~~~~L~~L~l~~~~~~~~--~~------------------------------------- 164 (319)
.+++|++|++++|.+... ..
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 224555555555543210 00
Q ss_pred cC--CCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCcc--ccCCCCC
Q psy14728 165 LD--GLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE--NLLSNEK 236 (319)
Q Consensus 165 l~--~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~ 236 (319)
+. ..++|+.|++++|.+.+. ..+..+++|++|++++|++..++ .+..+++|++|++++|.+++++ .+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 00 113555555555555543 23556667777777777766542 3566677777777777776653 2566677
Q ss_pred ccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728 237 LETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN 299 (319)
Q Consensus 237 L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 299 (319)
|++|++++|.++.+ ..+..+++|++|++++|++++.+ ...+..+++|+.|++++|++.+.++
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCC-HhHhccCCcccEEEccCCCcccCCC
Confidence 77777777777654 34666777777777777777632 2445667777777777777776654
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=4.1e-28 Score=227.87 Aligned_cols=255 Identities=20% Similarity=0.287 Sum_probs=213.4
Q ss_pred ccccceEEEecCCcccCccc--cccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEE
Q psy14728 57 KEVCIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKL 130 (319)
Q Consensus 57 ~~~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L 130 (319)
.+++++.++++++.+..+|. +..+++|++|++++|.++.++ .+..+++|++|++++|.+..++ .+..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 47889999999999998875 788999999999999998653 5899999999999999999886 37899999999
Q ss_pred EccCCcccccCC--CCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCC---
Q psy14728 131 YLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRL--- 203 (319)
Q Consensus 131 ~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~--- 203 (319)
++++|.++.++. +..+++|++|++++|.+..+. .+..+++|++|++++|.+..++ +..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCccccc
Confidence 999999998863 689999999999999987543 5889999999999999987753 44455555555555544
Q ss_pred ----------------CCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcC
Q psy14728 204 ----------------RTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWIN 265 (319)
Q Consensus 204 ----------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~ 265 (319)
..++. ...++|+.|++++|.+++.+.+..+++|+.|++++|.++++ ..+..+++|++|+++
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEEC-SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred cCCchhheeeccCCccccccc-ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 33322 22367899999999999888889999999999999999865 468899999999999
Q ss_pred CCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 266 DNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 266 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
+|.++++ +..+..+++|+.|++++|++...|.. +..+++|+.|++++|
T Consensus 287 ~N~l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 287 NNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERN----QPQFDRLENLYLDHN 334 (597)
T ss_dssp TSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGG----HHHHTTCSEEECCSS
T ss_pred CCCCCCC--CcccccCCCCcEEECCCCCCCccCcc----cccCCCCCEEECCCC
Confidence 9999874 35557789999999999999988874 467899999999876
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=5.1e-28 Score=233.54 Aligned_cols=279 Identities=18% Similarity=0.226 Sum_probs=156.3
Q ss_pred ccccCCCCcchhhhhccCchhhcccccccceEEEecCCc-ccC--ccc-cc-------cCCCCCEEEccCCCccCccC--
Q psy14728 32 QMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNL-IKK--IEN-IH-------MLTTLKELELYDNQLTVIEN-- 98 (319)
Q Consensus 32 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--l~~-~~-------~~~~L~~L~l~~~~~~~~~~-- 98 (319)
...|+.++++.+...+..+ ..+..+++|+.|++++|. +++ +|. +. .+++|++|++++|.++.++.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLP--DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp CTTCCEEEEESCTTCCSCC--GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred CCCCCEEECcCCCCCccCh--HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 3445556666665555544 556666666666666665 553 331 22 33466666666666664443
Q ss_pred -CCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccC-CCCCCCC-ccEEEccCCcCcCccc-cCCC--CCcc
Q psy14728 99 -LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIE-NVDHLKK-LKVLELGDNKIRIIEN-LDGL--TNLE 172 (319)
Q Consensus 99 -~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~-L~~L~l~~~~~~~~~~-l~~~--~~L~ 172 (319)
+.++++|++|++++|.+..+|.+..+++|+.|++++|.++.++ .+..+++ |++|++++|.+..++. +... ++|+
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEE
T ss_pred hhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCC
Confidence 6666666666666666666666666666666666666666554 4555565 6666666665543321 2222 1244
Q ss_pred EEEcCCC-----------------------------CCccccC--CCCCCCCCEEECCCCCCCCCcC-C-c-------CC
Q psy14728 173 ELYLGKN-----------------------------KISRIDN--LASLTKLNILSLQCNRLRTIEN-L-E-------AL 212 (319)
Q Consensus 173 ~L~l~~~-----------------------------~l~~~~~--l~~~~~L~~L~l~~~~~~~~~~-~-~-------~~ 212 (319)
.|++++| .+..++. +..+++|+.|++++|++..+|. . . .+
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTG
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccccc
Confidence 4444444 4443321 1245556666666665555432 1 1 11
Q ss_pred CCCCeEeccCCcCcCccc-cC--CCCCccEEEccCCCCCCcc-ccccCCCCcEEEcCC------CcCCCCcccccccCCC
Q psy14728 213 TNLTQLYLSENGLTTIEN-LL--SNEKLETLDVAYNKISIIQ-NIAHLTELQEFWIND------NQVSDWNTVNVLENNK 282 (319)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~-~~--~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~------n~~~~~~~~~~~~~~~ 282 (319)
++|+.|++++|+++.+|. +. .+++|+.|++++|.+++++ .+..+++|+.|++++ |.+.+ ..+..+..++
T Consensus 728 ~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~-~ip~~l~~L~ 806 (876)
T 4ecn_A 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR-QWPTGITTCP 806 (876)
T ss_dssp GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCC-CCCTTGGGCS
T ss_pred CCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccc-cChHHHhcCC
Confidence 266666666666665553 33 5666666666666666543 355666666666655 44443 2334556666
Q ss_pred CCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 283 QLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 283 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
+|+.|++++|++...|.. .+++|+.||+++|
T Consensus 807 ~L~~L~Ls~N~L~~Ip~~------l~~~L~~LdLs~N 837 (876)
T 4ecn_A 807 SLIQLQIGSNDIRKVDEK------LTPQLYILDIADN 837 (876)
T ss_dssp SCCEEECCSSCCCBCCSC------CCSSSCEEECCSC
T ss_pred CCCEEECCCCCCCccCHh------hcCCCCEEECCCC
Confidence 666677766666655552 2356666666654
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=6.2e-28 Score=232.93 Aligned_cols=280 Identities=18% Similarity=0.263 Sum_probs=196.8
Q ss_pred CCCceEEEEEeeeccc------cccccccCCCCcchhh-hhc-cCchhhccc-------ccccceEEEecCCcccCccc-
Q psy14728 13 DNDNLVTLNVEAVENT------HGNQMSLDNPDEESEA-ETT-ESKAEDEES-------KEVCIERLLLRWNLIKKIEN- 76 (319)
Q Consensus 13 ~~~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~-~~~-~~~~~~~~~-------~~~~L~~L~l~~~~~~~l~~- 76 (319)
...+++.++++.+... ..+...|+.++++.+. ..+ ..| ..+. .+++|+.|++++|.+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP--~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK--ADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHH--HHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccch--HHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 4677888888776422 2334456667777665 443 222 2233 34477777777777776655
Q ss_pred --cccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCcccc-CCCCCCC-ccEEEccCCcccccCC-CC-------
Q psy14728 77 --IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK-GLDHLAN-LEKLYLCSNKISKIEN-VD------- 144 (319)
Q Consensus 77 --~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~l~~-L~~L~l~~~~~~~~~~-~~------- 144 (319)
+..+++|+.|++++|+++.++.++.+++|+.|++++|.+..+| .+..+++ |+.|++++|.++.+|. +.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 6677777777777777765556667777777777777766655 3556666 6666666666554431 11
Q ss_pred ------------------------CCCCccEEEccCCcCcCccc--cCCCCCccEEEcCCCCCccccC-CC--------C
Q psy14728 145 ------------------------HLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN-LA--------S 189 (319)
Q Consensus 145 ------------------------~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~-l~--------~ 189 (319)
.+++|+.|++++|.+..++. +..+++|+.|++++|.+..++. +. +
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 22356666666666554432 2367899999999999887643 22 2
Q ss_pred CCCCCEEECCCCCCCCCcC-Cc--CCCCCCeEeccCCcCcCccc-cCCCCCccEEEccC------CCCCC-c-cccccCC
Q psy14728 190 LTKLNILSLQCNRLRTIEN-LE--ALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAY------NKISI-I-QNIAHLT 257 (319)
Q Consensus 190 ~~~L~~L~l~~~~~~~~~~-~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~------~~~~~-~-~~l~~~~ 257 (319)
+++|+.|++++|+++.+|. +. .+++|+.|++++|.++++|. +..+++|+.|++++ |.+.. + ..+..++
T Consensus 727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 3389999999999998765 44 89999999999999999874 88999999999987 55543 3 4688999
Q ss_pred CCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCCh
Q psy14728 258 ELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP 298 (319)
Q Consensus 258 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 298 (319)
+|++|++++|+++..+ ..+. ++|+.|++++|++....
T Consensus 807 ~L~~L~Ls~N~L~~Ip--~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 807 SLIQLQIGSNDIRKVD--EKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp SCCEEECCSSCCCBCC--SCCC--SSSCEEECCSCTTCEEE
T ss_pred CCCEEECCCCCCCccC--Hhhc--CCCCEEECCCCCCCccC
Confidence 9999999999996543 3333 79999999999998653
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.7e-27 Score=222.77 Aligned_cols=261 Identities=21% Similarity=0.244 Sum_probs=153.4
Q ss_pred hcccccccceEEEecCCcccCcc-ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCc-ccc--CCCCCCC
Q psy14728 53 DEESKEVCIERLLLRWNLIKKIE-NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIR-EIK--GLDHLAN 126 (319)
Q Consensus 53 ~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~-~l~--~~~~l~~ 126 (319)
..+..+++|+.|++++|.++.+| .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+. .++ .+..+++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 34666677777777777666665 366667777777777766543 23566666666666666654 333 2556666
Q ss_pred ccEEEccCCcccccC----CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCccc---cCCCCCCCCCEEE
Q psy14728 127 LEKLYLCSNKISKIE----NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI---DNLASLTKLNILS 197 (319)
Q Consensus 127 L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~---~~l~~~~~L~~L~ 197 (319)
|++|++++|.++... .+..+++|++|++++|.+... ..+..+++|++|++++|.+... ..+..+++|+.|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 666666666665532 455666666666666665422 3455566666666666665543 1255566666666
Q ss_pred CCCCCCCCCc--CCcCCCCCCeEeccCCcCcCc-----cccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCc
Q psy14728 198 LQCNRLRTIE--NLEALTNLTQLYLSENGLTTI-----ENLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQ 268 (319)
Q Consensus 198 l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~ 268 (319)
+++|.+...+ .+..+++|++|++++|.+++. ..+..+++|++|++++|.++.+ ..+..+++|++|++++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 6666665431 255566666666666666541 1255556666666666666543 235566666666666666
Q ss_pred CCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEeccc
Q psy14728 269 VSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL 318 (319)
Q Consensus 269 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~ 318 (319)
+++. .+..+..++.| .|++++|+++..+.. .+..+++|+.+++++
T Consensus 512 l~~~-~~~~l~~l~~L-~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 512 LTSS-SIEALSHLKGI-YLNLASNHISIILPS---LLPILSQQRTINLRQ 556 (606)
T ss_dssp CCGG-GGGGGTTCCSC-EEECCSSCCCCCCGG---GHHHHHTSSEEECTT
T ss_pred cCcC-ChhHhCccccc-EEECcCCcccccCHh---hcccCCCCCEEeCCC
Confidence 6652 33455566666 666666666655441 234555666666554
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=9.3e-28 Score=225.99 Aligned_cols=128 Identities=23% Similarity=0.240 Sum_probs=79.2
Q ss_pred CCCCCCEEECCCCCCCCCc-CCcCCCCCCeEeccCCcCcCcc---ccCCCCCccEEEccCCCCCCc--cccccCCCCcEE
Q psy14728 189 SLTKLNILSLQCNRLRTIE-NLEALTNLTQLYLSENGLTTIE---NLLSNEKLETLDVAYNKISII--QNIAHLTELQEF 262 (319)
Q Consensus 189 ~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L 262 (319)
.+++|++|++++|.+..++ .+..+++|++|++++|.+.+.+ .+..+++|++|++++|.+... ..+..+++|++|
T Consensus 374 ~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 3344444444444443332 2455566666666666665542 355666777777777766542 346677777777
Q ss_pred EcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 263 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
++++|.+++...+..+..+++|+.|++++|.++..+. ..+..+++|+.|++++|
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW---GVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECCSS
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh---hhhcccccCCEEECCCC
Confidence 7777777653344566777888888888887776543 13567788888887765
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2e-27 Score=216.14 Aligned_cols=260 Identities=25% Similarity=0.292 Sum_probs=207.6
Q ss_pred ccCCCceEEEEEeeeccc-------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccC--ccc--ccc
Q psy14728 11 EVDNDNLVTLNVEAVENT-------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKK--IEN--IHM 79 (319)
Q Consensus 11 ~~~~~~l~~l~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~--~~~ 79 (319)
.-...+++.++++.+... ......++.++++.+...+..+ ..+..+++|++|++++|.+++ ++. +..
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET--GAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT--TTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh--hhccCcccCCEEeCCCCCCCccccCcccccC
Confidence 345578889998877442 3444568888888887766544 678899999999999999986 333 888
Q ss_pred CCCCCEEEccCCCccCc-c-C-CCCCCCCcEEEccCCCCcccc--CCC--------------------------------
Q psy14728 80 LTTLKELELYDNQLTVI-E-N-LDTLINLEILDLSFNRIREIK--GLD-------------------------------- 122 (319)
Q Consensus 80 ~~~L~~L~l~~~~~~~~-~-~-~~~l~~L~~L~l~~~~~~~l~--~~~-------------------------------- 122 (319)
+++|++|++++|.++.+ + . +.++++|++|++++|.+..++ .+.
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 99999999999998854 3 2 788999999999999877542 122
Q ss_pred --CCCCccEEEccCCcccccC---------------------------------------CCC--CCCCccEEEccCCcC
Q psy14728 123 --HLANLEKLYLCSNKISKIE---------------------------------------NVD--HLKKLKVLELGDNKI 159 (319)
Q Consensus 123 --~l~~L~~L~l~~~~~~~~~---------------------------------------~~~--~~~~L~~L~l~~~~~ 159 (319)
.+++|++|++++|.+++.. .+. ..++|++|++++|.+
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence 3468999999999775310 000 136899999999988
Q ss_pred cCc--cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCcc--cc
Q psy14728 160 RII--ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE--NL 231 (319)
Q Consensus 160 ~~~--~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~ 231 (319)
... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|++..++ .+..+++|++|++++|++++++ .+
T Consensus 288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence 633 4578899999999999999886 36889999999999999998763 4788999999999999999873 48
Q ss_pred CCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCcCCCC
Q psy14728 232 LSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDW 272 (319)
Q Consensus 232 ~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~~~~ 272 (319)
..+++|++|++++|.++.++. +..+++|++|++++|+++..
T Consensus 368 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 899999999999999998653 78999999999999999874
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=8.4e-27 Score=219.45 Aligned_cols=244 Identities=21% Similarity=0.187 Sum_probs=136.8
Q ss_pred ccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCC---------------------
Q psy14728 55 ESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFN--------------------- 113 (319)
Q Consensus 55 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~--------------------- 113 (319)
+..+++|+.|+++++.+..++.+..+++|++|++++|.+..++.+ .+++|++|++++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR 359 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCS
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcC
Confidence 566667777777777666666666666666666666666555444 5555555555555
Q ss_pred -CCccc---c-CCCCCCCccEEEccCCcccccC-CCCCCCCccEEEccCCcCcCc---cccCCCCCccEEEcCCCCCccc
Q psy14728 114 -RIREI---K-GLDHLANLEKLYLCSNKISKIE-NVDHLKKLKVLELGDNKIRII---ENLDGLTNLEELYLGKNKISRI 184 (319)
Q Consensus 114 -~~~~l---~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~l~~~ 184 (319)
.+... + .+..+++|++|++++|.++.++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+...
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence 44332 1 1333445555555555544443 445555566666655555422 2345556666666666655443
Q ss_pred --cCCCCCCCCCEEECCCCCCCC--Cc-CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--ccccc
Q psy14728 185 --DNLASLTKLNILSLQCNRLRT--IE-NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAH 255 (319)
Q Consensus 185 --~~l~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~ 255 (319)
..+..+++|++|++++|++.. ++ .+..+++|++|++++|.+++++ .+..+++|++|++++|.++.+ ..+..
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence 235555666666666665543 22 2555666666666666665542 255566666666666666553 34556
Q ss_pred CCCCcEEEcCCCcCCCCcccccccCCC-CCcEEEcCCCcCcCChhhH
Q psy14728 256 LTELQEFWINDNQVSDWNTVNVLENNK-QLQTIYLDRNPVAQDPNYR 301 (319)
Q Consensus 256 ~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~ 301 (319)
+++|++|++++|+++..+ ..+..++ +|+.|++++|++.+++...
T Consensus 520 l~~L~~L~l~~N~l~~~p--~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 520 LYSLSTLDCSFNRIETSK--GILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CTTCCEEECTTSCCCCEE--SCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCcCCEEECCCCcCcccC--HhHhhhcccCcEEEccCCCcccCCccH
Confidence 666666666666666432 2345554 4666666666666655543
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=9e-27 Score=216.73 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=95.5
Q ss_pred CceEEEEEeeeccc------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccc--cccCCCCCEE
Q psy14728 15 DNLVTLNVEAVENT------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIEN--IHMLTTLKEL 86 (319)
Q Consensus 15 ~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~L~~L 86 (319)
.+++.++++.+... ......++.++++.+...+..+ ..+..+++|++|++++|.+.+++. ++.+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG--DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh--hhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 57888888776543 2344567778888877665443 678889999999999999988753 8889999999
Q ss_pred EccCCCccCc---cCCCCCCCCcEEEccCCC-Ccccc--CCCCCCCccEEEccCCcccc
Q psy14728 87 ELYDNQLTVI---ENLDTLINLEILDLSFNR-IREIK--GLDHLANLEKLYLCSNKISK 139 (319)
Q Consensus 87 ~l~~~~~~~~---~~~~~l~~L~~L~l~~~~-~~~l~--~~~~l~~L~~L~l~~~~~~~ 139 (319)
++++|.++.+ +.++++++|++|++++|. +..++ .+..+++|++|++++|.+++
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 9999988743 458889999999999987 55665 57788888888888887765
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=220.96 Aligned_cols=128 Identities=19% Similarity=0.178 Sum_probs=70.3
Q ss_pred CCCCCCCCEEECCCCCCCCCc---CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCC--Cc-cccccCCC
Q psy14728 187 LASLTKLNILSLQCNRLRTIE---NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKIS--II-QNIAHLTE 258 (319)
Q Consensus 187 l~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~--~~-~~l~~~~~ 258 (319)
+..+++|++|++++|.+...+ .+..+++|+.|++++|.+.+.. .+..+++|++|++++|.+. .+ ..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 344455555555555444321 2445556666666666555432 2455566666666666554 12 34556666
Q ss_pred CcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEeccc
Q psy14728 259 LQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL 318 (319)
Q Consensus 259 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~ 318 (319)
|++|++++|++++. .+..+..+++|+.|++++|.++..+.. .+..+++|+.|++++
T Consensus 472 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 472 LTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMASNQLKSVPDG---IFDRLTSLQKIWLHT 527 (570)
T ss_dssp CCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCS
T ss_pred CCEEECCCCccccC-ChhhhhcccCCCEEeCCCCcCCCCCHH---HhhcccCCcEEEecC
Confidence 66666666666652 234555666666666666666655441 245566666666654
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=5.7e-26 Score=206.09 Aligned_cols=224 Identities=23% Similarity=0.334 Sum_probs=129.2
Q ss_pred ccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCccc
Q psy14728 59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS 138 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~ 138 (319)
++|++|++++|.+++++.+..+++|++|++++|+++.++.. ..+|++|++++|.+..+|++..+++|++|++++|.++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence 45666666666666665566666666666666666544321 2366666666666666666666666666666666665
Q ss_pred ccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeE
Q psy14728 139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218 (319)
Q Consensus 139 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L 218 (319)
+++.. .++|++|++++|.+..++.+..+++|++|++++|.+.+++.. .++|+.|++++|++..++.. +++|+.|
T Consensus 209 ~l~~~--~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~--~~~L~~L 282 (454)
T 1jl5_A 209 KLPDL--PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL--PQSLTFL 282 (454)
T ss_dssp SCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC--CTTCCEE
T ss_pred cCCCC--cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc--cCcCCEE
Confidence 54432 245666666666655555555666666666666665554332 24555555555555544321 2445555
Q ss_pred eccCCcCcCccccC-----------------C-CCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccC
Q psy14728 219 YLSENGLTTIENLL-----------------S-NEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280 (319)
Q Consensus 219 ~l~~~~~~~~~~~~-----------------~-~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 280 (319)
++++|.+++++.+. . +++|++|++++|.+++++.. +++|++|++++|+++..+. .
T Consensus 283 ~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~L~~N~l~~lp~-----~ 355 (454)
T 1jl5_A 283 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPE-----L 355 (454)
T ss_dssp ECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSCCCC-----C
T ss_pred ECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc--CCcCCEEECCCCccccccc-----h
Confidence 55555444432110 1 13666666666666655432 4677777777777775332 3
Q ss_pred CCCCcEEEcCCCcCcCC
Q psy14728 281 NKQLQTIYLDRNPVAQD 297 (319)
Q Consensus 281 ~~~L~~L~l~~n~~~~~ 297 (319)
+++|+.|++++|+++..
T Consensus 356 l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREF 372 (454)
T ss_dssp CTTCCEEECCSSCCSSC
T ss_pred hhhccEEECCCCCCCcC
Confidence 57777888888777763
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1.2e-26 Score=202.54 Aligned_cols=255 Identities=25% Similarity=0.286 Sum_probs=208.3
Q ss_pred cccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEcc
Q psy14728 58 EVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC 133 (319)
Q Consensus 58 ~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~ 133 (319)
.++++.|++++|.+..++ .+..+++|++|++++|+++.+ ..+..+++|++|++++|.+..+|.-.. ++|++|+++
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~ 131 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIH 131 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECC
Confidence 368999999999999774 488999999999999999854 458999999999999999998874322 899999999
Q ss_pred CCcccccC--CCCCCCCccEEEccCCcCcC----ccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc
Q psy14728 134 SNKISKIE--NVDHLKKLKVLELGDNKIRI----IENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE 207 (319)
Q Consensus 134 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~ 207 (319)
+|.++.++ .+..+++|++|++++|.+.. ...+..+ +|++|++++|.+..++... .++|++|++++|.++.++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIE 209 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSSCCCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc-cCCCCEEECCCCcCCccC
Confidence 99998876 37889999999999998852 2345555 9999999999988875322 278999999999998764
Q ss_pred --CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc-ccccCCCCcEEEcCCCcCCCCcccccccC--
Q psy14728 208 --NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLEN-- 280 (319)
Q Consensus 208 --~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~-- 280 (319)
.+..+++|++|++++|.+++++ .+..+++|++|++++|.++.++ ++..+++|++|++++|++++.+. ..+..
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~ 288 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV-NDFCPVG 288 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCT-TSSSCSS
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccCh-hHccccc
Confidence 4889999999999999999875 3888999999999999998765 48899999999999999998543 33332
Q ss_pred ----CCCCcEEEcCCCcCc--CChhhHHHHHHhCCceEEEecccC
Q psy14728 281 ----NKQLQTIYLDRNPVA--QDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 281 ----~~~L~~L~l~~n~~~--~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
.+.|+.|++++|++. ..+. ..+..++.|+.++++++
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~---~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQP---ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCG---GGGTTBCCSTTEEC---
T ss_pred cccccccccceEeecCcccccccCc---ccccccchhhhhhcccc
Confidence 467899999999987 3333 24677999999988764
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.3e-26 Score=200.53 Aligned_cols=256 Identities=23% Similarity=0.311 Sum_probs=210.7
Q ss_pred cccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEcc
Q psy14728 58 EVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC 133 (319)
Q Consensus 58 ~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~ 133 (319)
.++++.|+++++.+++++ .+..+++|++|++++|.++.+ ..+..+++|++|++++|.++.+|.-. .++|++|+++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~l~ 129 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTLQELRVH 129 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-CTTCCEEECC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-cccccEEECC
Confidence 368999999999999886 488999999999999999865 45899999999999999999887422 2799999999
Q ss_pred CCcccccC--CCCCCCCccEEEccCCcCcC----ccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCC-
Q psy14728 134 SNKISKIE--NVDHLKKLKVLELGDNKIRI----IENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTI- 206 (319)
Q Consensus 134 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~- 206 (319)
+|.++.++ .+..+++|++|++++|.+.. ...+..+++|++|++++|.+..++... .++|++|++++|+++.+
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVD 208 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEEC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccC
Confidence 99998875 47889999999999998852 345788999999999999988875432 28899999999999875
Q ss_pred -cCCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc-ccccCCCCcEEEcCCCcCCCCccccccc---
Q psy14728 207 -ENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLE--- 279 (319)
Q Consensus 207 -~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~--- 279 (319)
..+..+++|++|++++|.+++++ .+..+++|++|++++|.++.++ ++..+++|++|++++|++++.+. ..+.
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~-~~f~~~~ 287 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS-NDFCPPG 287 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT-TSSSCSS
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccCh-hhcCCcc
Confidence 34889999999999999999875 4888999999999999998774 58899999999999999988543 3332
Q ss_pred ---CCCCCcEEEcCCCcCcC--ChhhHHHHHHhCCceEEEecccC
Q psy14728 280 ---NNKQLQTIYLDRNPVAQ--DPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 280 ---~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
..+.++.|++++|++.. .+. ..+..++.++.++++++
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~~~i~~---~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQYWEIQP---STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCGGGSCG---GGGTTCCCGGGEEC---
T ss_pred cccccccccceEeecCcccccccCc---cccccccceeEEEeccc
Confidence 24788999999999874 222 23567888888888753
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=214.62 Aligned_cols=100 Identities=18% Similarity=0.092 Sum_probs=74.2
Q ss_pred CceEEEEEeeecccc------ccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccccccCCCCCEEEc
Q psy14728 15 DNLVTLNVEAVENTH------GNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELEL 88 (319)
Q Consensus 15 ~~l~~l~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l 88 (319)
.+++.++++.+.... .....++.++++.+...+..+ ..+..+++|++|++++|.++.++.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI--SVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG--GGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh--HHhhcccCCCEEecCCCceeecCcc-ccCCccEEec
Confidence 778888888776542 233457777777776665433 6788888899999998888887765 7888888888
Q ss_pred cCCCccCc---cCCCCCCCCcEEEccCCCCcc
Q psy14728 89 YDNQLTVI---ENLDTLINLEILDLSFNRIRE 117 (319)
Q Consensus 89 ~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~ 117 (319)
++|.++.+ ..++.+++|++|++++|.+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch
Confidence 88888742 457888888888888877653
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=3.2e-26 Score=207.77 Aligned_cols=250 Identities=20% Similarity=0.237 Sum_probs=117.0
Q ss_pred CccccCCCceEEEEEeeecc-----ccccccccCCCCcchhhhhccCchhhccccccc-------------ceEEEecCC
Q psy14728 8 NTDEVDNDNLVTLNVEAVEN-----THGNQMSLDNPDEESEAETTESKAEDEESKEVC-------------IERLLLRWN 69 (319)
Q Consensus 8 ~~~~~~~~~l~~l~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~ 69 (319)
+.+.+....++.+.++.+.. ..++...++.++++.+...+..+ ..+..+++ ++.|+++++
T Consensus 4 ~p~~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 4 NPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAP--PGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSC--TTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred cccccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCC--cccccchhcchhhhhhhhccCCCEEEecCC
Confidence 34455556666655544432 34445556677777777766655 44555554 377777777
Q ss_pred cccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCc
Q psy14728 70 LIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKL 149 (319)
Q Consensus 70 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L 149 (319)
.++++|.+ .++|++|++++|.++.++. .+++|++|++++|.+..++.+. ++|++|++++|.+++++.+..+++|
T Consensus 82 ~l~~lp~~--~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp~~~~l~~L 155 (454)
T 1jl5_A 82 GLSSLPEL--PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPELQNSSFL 155 (454)
T ss_dssp CCSCCCSC--CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCCCTTCTTC
T ss_pred ccccCCCC--cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCcccCCCCCC
Confidence 77766553 3566666666666655432 1245555555555544443321 3455555555555444444445555
Q ss_pred cEEEccCCcC--------------------cCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCC
Q psy14728 150 KVLELGDNKI--------------------RIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL 209 (319)
Q Consensus 150 ~~L~l~~~~~--------------------~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 209 (319)
++|++++|.+ ..++.+..+++|++|++++|.+.+++... ++|++|++++|.+..+|.+
T Consensus 156 ~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~n~l~~lp~~ 233 (454)
T 1jl5_A 156 KIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVAGNNILEELPEL 233 (454)
T ss_dssp CEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEECCSSCCSSCCCC
T ss_pred CEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc--CcccEEECcCCcCCccccc
Confidence 5555555444 43334444444555555444444432221 3455555555555444445
Q ss_pred cCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCC
Q psy14728 210 EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 210 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 271 (319)
..+++|++|++++|+++++|.. +++|++|++++|.+++++.. +++|++|++++|++++
T Consensus 234 ~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSG 291 (454)
T ss_dssp TTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSE
T ss_pred CCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc--cCcCCEEECcCCccCc
Confidence 5555555555555555554431 24555555555555544322 2455555555555544
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=7.4e-27 Score=225.34 Aligned_cols=299 Identities=25% Similarity=0.268 Sum_probs=183.1
Q ss_pred CceEEEEEeeeccc------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCccc-Ccc-ccccCC-CCCE
Q psy14728 15 DNLVTLNVEAVENT------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIK-KIE-NIHMLT-TLKE 85 (319)
Q Consensus 15 ~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~-~~~~~~-~L~~ 85 (319)
.+++.++++.+... ......++.++++.+...+..+ ...+..+++|++|++++|.+. .++ .+..++ +|++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC-HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC-HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 56677776655432 3344456666777666655444 123666777777777777665 333 233333 4444
Q ss_pred EEccCC--------------------------CccC--ccCCCCCCCCcEEEccCCCCcc-cc-CCCCCCCccEEEccCC
Q psy14728 86 LELYDN--------------------------QLTV--IENLDTLINLEILDLSFNRIRE-IK-GLDHLANLEKLYLCSN 135 (319)
Q Consensus 86 L~l~~~--------------------------~~~~--~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~ 135 (319)
|++++| .++. +..+.++++|++|++++|.+.. +| .+..+++|+.|++++|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 444444 4431 1234555555555555555542 22 3455556666666666
Q ss_pred ccccc-C-CCCCCCCccEEEccCCcCc--CccccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCC-Cc-
Q psy14728 136 KISKI-E-NVDHLKKLKVLELGDNKIR--IIENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRT-IE- 207 (319)
Q Consensus 136 ~~~~~-~-~~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~-~~- 207 (319)
.+++. + .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+. ..+..+++|+.|++++|++.+ +|
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 55532 2 4555666666666666664 223456666777777777766543 345666777777777777653 33
Q ss_pred CCcCCCCCCeEeccCCcCcC-cc---------------------------------------------------------
Q psy14728 208 NLEALTNLTQLYLSENGLTT-IE--------------------------------------------------------- 229 (319)
Q Consensus 208 ~~~~~~~L~~L~l~~~~~~~-~~--------------------------------------------------------- 229 (319)
.+..+++|+.|++++|.+++ +|
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 36677777777777776542 11
Q ss_pred --------------ccCCCCCccEEEccCCCCCC-c-cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCc
Q psy14728 230 --------------NLLSNEKLETLDVAYNKISI-I-QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293 (319)
Q Consensus 230 --------------~~~~~~~L~~L~l~~~~~~~-~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 293 (319)
.+..+++|+.|++++|.+++ + ..++.+++|+.|++++|++++ .++..++.+++|+.|++++|.
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSC
T ss_pred cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC-CCChHHhCCCCCCEEECCCCc
Confidence 12234567788888888764 3 457788888888888888887 455777888888888888888
Q ss_pred CcC-ChhhHHHHHHhCCceEEEecccC
Q psy14728 294 VAQ-DPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 294 ~~~-~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
++. +|. .+..++.|+.||++++
T Consensus 692 l~g~ip~----~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 692 LDGRIPQ----AMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEECCCG----GGGGCCCCSEEECCSS
T ss_pred ccCcCCh----HHhCCCCCCEEECcCC
Confidence 884 344 3577888888888764
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=8.1e-26 Score=204.73 Aligned_cols=242 Identities=29% Similarity=0.394 Sum_probs=209.5
Q ss_pred cceEEEecCCcccCccccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCC
Q psy14728 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSN 135 (319)
Q Consensus 60 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~ 135 (319)
..+.++..+..++.+|. .-.++++.|++++|+++.+ ..+.++++|++|++++|.+..++ .+..+++|++|++++|
T Consensus 44 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 46788888888888874 2237899999999999854 45899999999999999998875 5888999999999999
Q ss_pred cccccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCC-Cccc--cCCCCCCCCCEEECCCCCCCCCcC
Q psy14728 136 KISKIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNK-ISRI--DNLASLTKLNILSLQCNRLRTIEN 208 (319)
Q Consensus 136 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~-l~~~--~~l~~~~~L~~L~l~~~~~~~~~~ 208 (319)
.++.++ .+..+++|++|++++|.+..++ .+..+++|++|+++++. +..+ ..+..+++|++|++++|+++.++.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 999876 5889999999999999987554 47889999999999854 5444 358889999999999999999999
Q ss_pred CcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCC
Q psy14728 209 LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQL 284 (319)
Q Consensus 209 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 284 (319)
+..+++|++|++++|.+++++ .+..+++|++|++++|.++.+ ..+..+++|++|++++|+++..+ ...+..+++|
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L 281 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHL 281 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC-TTTTSSCTTC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC-hhHhccccCC
Confidence 999999999999999999874 488999999999999999875 45889999999999999999854 3677889999
Q ss_pred cEEEcCCCcCcCChhhHHH
Q psy14728 285 QTIYLDRNPVAQDPNYRRK 303 (319)
Q Consensus 285 ~~L~l~~n~~~~~~~~~~~ 303 (319)
+.|++++|++.+++...+.
T Consensus 282 ~~L~L~~Np~~CdC~l~~l 300 (440)
T 3zyj_A 282 ERIHLHHNPWNCNCDILWL 300 (440)
T ss_dssp CEEECCSSCEECSSTTHHH
T ss_pred CEEEcCCCCccCCCCchHH
Confidence 9999999999999887654
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.2e-26 Score=224.00 Aligned_cols=302 Identities=22% Similarity=0.228 Sum_probs=217.8
Q ss_pred CCceEEEEEeeecccc------ccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccC-cc---ccccCCCC
Q psy14728 14 NDNLVTLNVEAVENTH------GNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKK-IE---NIHMLTTL 83 (319)
Q Consensus 14 ~~~l~~l~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~---~~~~~~~L 83 (319)
...++.++++...... .....+..+++......+..+....+..+++|++|++++|.+.+ ++ .++.+++|
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 3567777776433211 11223444555555444444444678889999999999998874 33 57889999
Q ss_pred CEEEccCCCccCc--cC-CCCCCCCcEEEccCCCCcccc--C---CCCCCCccEEEccCCcccccCCCCCCCCccEEEcc
Q psy14728 84 KELELYDNQLTVI--EN-LDTLINLEILDLSFNRIREIK--G---LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELG 155 (319)
Q Consensus 84 ~~L~l~~~~~~~~--~~-~~~l~~L~~L~l~~~~~~~l~--~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 155 (319)
++|++++|.++.. .. +.++++|++|++++|.+.... . +..+++|++|++++|.+++...+..+++|++|+++
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls 208 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECC
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECc
Confidence 9999999988632 22 378899999999999888654 2 67888999999999988877666888999999999
Q ss_pred CCcCcC-ccccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCc-Cccc-
Q psy14728 156 DNKIRI-IENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT-TIEN- 230 (319)
Q Consensus 156 ~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~- 230 (319)
+|.+.. ++.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+......+++|++|++++|.++ .+|.
T Consensus 209 ~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~ 288 (768)
T 3rgz_A 209 SNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDF 288 (768)
T ss_dssp SSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCC
T ss_pred CCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHH
Confidence 888763 44578889999999999888754 467888899999999988865322237888889999888887 4453
Q ss_pred cCC-CCCccEEEccCCCCCC--ccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCc-CChhhHHHHHH
Q psy14728 231 LLS-NEKLETLDVAYNKISI--IQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVA-QDPNYRRKIKL 306 (319)
Q Consensus 231 ~~~-~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~ 306 (319)
+.. +++|++|++++|.+++ +..+..+++|++|++++|.+.+......+..+++|+.|++++|.+. ..|.. +.
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~----l~ 364 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES----LT 364 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT----HH
T ss_pred HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH----HH
Confidence 434 4888888988888763 3457888888888888888874222244778888888888888887 44443 23
Q ss_pred hCC-ceEEEecccC
Q psy14728 307 VCP-WIVQIDATLA 319 (319)
Q Consensus 307 ~~~-~L~~l~~~~C 319 (319)
.++ +|+.|+++.|
T Consensus 365 ~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 365 NLSASLLTLDLSSN 378 (768)
T ss_dssp HHTTTCSEEECCSS
T ss_pred hhhcCCcEEEccCC
Confidence 333 6666666543
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.5e-26 Score=214.37 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=51.6
Q ss_pred CceEEEEEeeecccc------ccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccccccCCCCCEEEc
Q psy14728 15 DNLVTLNVEAVENTH------GNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELEL 88 (319)
Q Consensus 15 ~~l~~l~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l 88 (319)
.+++.++++.+.... .....++.++++.+...+..+ ..+..+++|++|++++|.++.++.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--HVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT--TTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH--HHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEEC
Confidence 455555555443321 222234445555554443322 4455566666666666666555543 5566666666
Q ss_pred cCCCccCc---cCCCCCCCCcEEEccCCCCc
Q psy14728 89 YDNQLTVI---ENLDTLINLEILDLSFNRIR 116 (319)
Q Consensus 89 ~~~~~~~~---~~~~~l~~L~~L~l~~~~~~ 116 (319)
++|+++.+ ..++++++|++|++++|.+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccc
Confidence 66655532 23556666666666666554
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.5e-25 Score=209.19 Aligned_cols=102 Identities=22% Similarity=0.211 Sum_probs=67.2
Q ss_pred ccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCccCCCCCCCCcEEEcc
Q psy14728 34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLS 111 (319)
Q Consensus 34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 111 (319)
.++.++++.+...+..+ ..+..+++|++|++++|.+++++ .+..+++|++|++++|+++.++.. .+++|++|+++
T Consensus 53 ~L~~L~Ls~N~i~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRM--PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCG--GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECC
T ss_pred CcCEEECCCCCccccCh--hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECC
Confidence 45556666666554433 56677777777777777777653 367777777777777777655544 67777777777
Q ss_pred CCCCcccc---CCCCCCCccEEEccCCccc
Q psy14728 112 FNRIREIK---GLDHLANLEKLYLCSNKIS 138 (319)
Q Consensus 112 ~~~~~~l~---~~~~l~~L~~L~l~~~~~~ 138 (319)
+|.+..++ .+..+++|++|++++|.++
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCccccCchHhhcccCcccEEecCCCccc
Confidence 77776643 3566666666666666543
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.7e-25 Score=203.37 Aligned_cols=242 Identities=25% Similarity=0.355 Sum_probs=209.2
Q ss_pred cceEEEecCCcccCccccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCC
Q psy14728 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSN 135 (319)
Q Consensus 60 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~ 135 (319)
..+.++.++..++.+|. .-.+++++|++++|.++.+ ..+.++++|++|++++|.+..++ .+..+++|++|++++|
T Consensus 55 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 35788888888888874 2237899999999999854 45899999999999999999875 5888999999999999
Q ss_pred cccccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCC-CCccc--cCCCCCCCCCEEECCCCCCCCCcC
Q psy14728 136 KISKIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKN-KISRI--DNLASLTKLNILSLQCNRLRTIEN 208 (319)
Q Consensus 136 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~-~l~~~--~~l~~~~~L~~L~l~~~~~~~~~~ 208 (319)
.++.++ .+..+++|++|++++|.+..++ .+..+++|++|+++++ .+..+ ..+..+++|+.|++++|+++.++.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc
Confidence 999876 4788999999999999987554 4788999999999985 45555 358889999999999999999999
Q ss_pred CcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCC
Q psy14728 209 LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQL 284 (319)
Q Consensus 209 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 284 (319)
+..+++|++|++++|.+++++ .+..+++|+.|++++|.++.+ ..+..+++|++|++++|+++..+ ...+..+++|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L 292 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP-HDLFTPLRYL 292 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTSSTTCTTC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC-hHHhccccCC
Confidence 999999999999999999874 488999999999999999865 45889999999999999999853 3667889999
Q ss_pred cEEEcCCCcCcCChhhHHH
Q psy14728 285 QTIYLDRNPVAQDPNYRRK 303 (319)
Q Consensus 285 ~~L~l~~n~~~~~~~~~~~ 303 (319)
+.|++++|++.+++...+.
T Consensus 293 ~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 293 VELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp CEEECCSSCEECSTTTHHH
T ss_pred CEEEccCCCcCCCCCchHH
Confidence 9999999999999887553
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=213.73 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=86.5
Q ss_pred cccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCccCCCCCCCCcEEEc
Q psy14728 33 MSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIENLDTLINLEILDL 110 (319)
Q Consensus 33 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 110 (319)
..++.++++.+...+..+ ..+..+++|++|++++|.++++. .+..+++|++|++++|+++.++.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT--SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCH--HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEEC
T ss_pred ccccEEECCCCcccccCh--hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEec
Confidence 457777888887765444 67889999999999999999873 589999999999999999877655 8999999999
Q ss_pred cCCCCccc--c-CCCCCCCccEEEccCCcccc
Q psy14728 111 SFNRIREI--K-GLDHLANLEKLYLCSNKISK 139 (319)
Q Consensus 111 ~~~~~~~l--~-~~~~l~~L~~L~l~~~~~~~ 139 (319)
++|.+..+ | .+..+++|++|++++|.++.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch
Confidence 99999864 3 57888899999998887654
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=2.4e-25 Score=212.23 Aligned_cols=195 Identities=23% Similarity=0.291 Sum_probs=126.0
Q ss_pred CCCCCCccEEEccCCcccc-cC--CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCccc----cCCCCCC
Q psy14728 121 LDHLANLEKLYLCSNKISK-IE--NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI----DNLASLT 191 (319)
Q Consensus 121 ~~~l~~L~~L~l~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~----~~l~~~~ 191 (319)
+..+++|+.|++++|.+++ ++ .+..+++|++|++++|.+... ..+..+++|+.|++.+|.+... ..+..++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 3444455555555555432 11 344455555555555544322 2344455555555555554322 3466677
Q ss_pred CCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCcc----------ccCCCCCccEEEccCCCCCCcc--ccccCC
Q psy14728 192 KLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE----------NLLSNEKLETLDVAYNKISIIQ--NIAHLT 257 (319)
Q Consensus 192 ~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~----------~~~~~~~L~~L~l~~~~~~~~~--~l~~~~ 257 (319)
+|+.|++++|+++.++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ .+.+++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 78888888888777643 677788888888888777542 1567788888888888887765 377888
Q ss_pred CCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHH-hCCceEEEecccC
Q psy14728 258 ELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKL-VCPWIVQIDATLA 319 (319)
Q Consensus 258 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~~~L~~l~~~~C 319 (319)
+|++|++++|+++..+ ...+..+++|+.|++++|.++..+.. .+. .+++|+.++++++
T Consensus 561 ~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNLITSVEKK---VFGPAFRNLTELDMRFN 619 (680)
T ss_dssp TCCEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCCCBCCHH---HHHHHHTTCSEEECTTC
T ss_pred CcceeECCCCCCCcCC-HhHhCCCCCCCEEECCCCcCCccChh---HhcccccccCEEEccCC
Confidence 8888888888888643 35567788888888888888877662 233 6788888887653
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=215.14 Aligned_cols=123 Identities=24% Similarity=0.227 Sum_probs=80.5
Q ss_pred CceEEEEEeeeccc------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCCCCEE
Q psy14728 15 DNLVTLNVEAVENT------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKEL 86 (319)
Q Consensus 15 ~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L 86 (319)
.+++.++++.+... ......++.++++.+...+..+ ..+..+++|++|++++|.++.++ .+..+++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT--TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc--ccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 45666776665432 2334456667777665544332 56777778888888887777654 36777777777
Q ss_pred EccCCCccCccC--CCCCCCCcEEEccCCCCcc--cc-CCCCCCCccEEEccCCcccc
Q psy14728 87 ELYDNQLTVIEN--LDTLINLEILDLSFNRIRE--IK-GLDHLANLEKLYLCSNKISK 139 (319)
Q Consensus 87 ~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~--l~-~~~~l~~L~~L~l~~~~~~~ 139 (319)
++++|+++.++. ++++++|++|++++|.+.. +| .+..+++|++|++++|.++.
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 777777765443 6777777777777777765 33 36667777777777776544
No 39
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.7e-25 Score=207.00 Aligned_cols=219 Identities=21% Similarity=0.237 Sum_probs=107.6
Q ss_pred cccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcc
Q psy14728 58 EVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKI 137 (319)
Q Consensus 58 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~ 137 (319)
+++|++|++++|.++.++. .+++|++|++++|.++.++. .+++|++|++++|.++.+|.. +++|++|++++|.+
T Consensus 80 l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N~l 153 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQL 153 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCC
T ss_pred CCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC--CCCCCEEECcCCcC
Confidence 3444444444444444433 33444444444444443332 334444444444444444321 24444444444444
Q ss_pred cccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCe
Q psy14728 138 SKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQ 217 (319)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~ 217 (319)
+.++. .+++|+.|++++|.+..++ ..+++|+.|++++|.+..++.. .++|+.|++++|.++.++. .+++|+.
T Consensus 154 ~~l~~--~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~--~~~~L~~ 225 (622)
T 3g06_A 154 ASLPA--LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPA--LPSGLKE 225 (622)
T ss_dssp SCCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCC--CCTTCCE
T ss_pred CCcCC--ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCC--CCCCCCE
Confidence 44332 2334444444444444333 2334555555555555544321 3455555555555554442 2355666
Q ss_pred EeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcC
Q psy14728 218 LYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQ 296 (319)
Q Consensus 218 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 296 (319)
|++++|.++++| ..+++|+.|++++|.++.++. .+++|++|++++|.++.. +..+..+++|+.|++++|++..
T Consensus 226 L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~l--p~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 226 LIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRL--PESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp EECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSC--CGGGGGSCTTCEEECCSCCCCH
T ss_pred EEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcC--CHHHhhccccCEEEecCCCCCC
Confidence 666666666555 344556666666666665544 455666666666666642 2445566666666666666554
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=7.2e-26 Score=195.32 Aligned_cols=238 Identities=21% Similarity=0.221 Sum_probs=178.3
Q ss_pred eEEEecCCcccCccccccCCCCCEEEccCCCccCccC--CCCCCCCcEEEccCCCCccc----cCCCCCCCccEEEccCC
Q psy14728 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI----KGLDHLANLEKLYLCSN 135 (319)
Q Consensus 62 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l----~~~~~l~~L~~L~l~~~ 135 (319)
+.++++++.++.+|. ...++|++|++++|+++.++. +.++++|++|++++|.+..+ ..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 456777777776664 223677788888777775543 67777888888887777644 23445677888888887
Q ss_pred cccccC-CCCCCCCccEEEccCCcCcCcc---ccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCC--C-
Q psy14728 136 KISKIE-NVDHLKKLKVLELGDNKIRIIE---NLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRT--I- 206 (319)
Q Consensus 136 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~---~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~--~- 206 (319)
.++.++ .+..+++|++|++++|.+.... .+..+++|++|++++|.+... ..+..+++|++|++++|.+.. +
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 777654 4667778888888877775442 467778888888888877654 346778888888888888765 3
Q ss_pred cCCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCCCcccccccCCC
Q psy14728 207 ENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNK 282 (319)
Q Consensus 207 ~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 282 (319)
..+..+++|++|++++|.+++++ .+..+++|++|++++|.++.++ .+..+++|++|++++|++++. .+..+..++
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~ 247 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFP 247 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC-SSSSCCCCC
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc-CHHHHHhhh
Confidence 34778889999999999988763 3778889999999999988754 477889999999999999884 335666774
Q ss_pred -CCcEEEcCCCcCcCChhhH
Q psy14728 283 -QLQTIYLDRNPVAQDPNYR 301 (319)
Q Consensus 283 -~L~~L~l~~n~~~~~~~~~ 301 (319)
+|+.|++++|++.+++...
T Consensus 248 ~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 248 SSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp TTCCEEECTTCCEECSGGGH
T ss_pred ccCCEEEccCCCeecccChH
Confidence 8999999999999887754
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=3.1e-25 Score=211.54 Aligned_cols=279 Identities=28% Similarity=0.322 Sum_probs=188.5
Q ss_pred cCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCcc------Ccc-----CCCC
Q psy14728 35 LDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLT------VIE-----NLDT 101 (319)
Q Consensus 35 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~------~~~-----~~~~ 101 (319)
++.++++.+...+..+ ..+..+++|++|++++|.+.++. .+..+++|++|+++++... .++ .+..
T Consensus 250 L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGN--DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CCEEECTTSCCCEECT--TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCEEECCCCCcCccCc--ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 5555555555443332 45666677777777776666442 2455555555555543221 111 2444
Q ss_pred CCCCcEEEccCCCCcccc--CCCCCCC----------------------------ccEEEccCCcccccC--CCCCCCCc
Q psy14728 102 LINLEILDLSFNRIREIK--GLDHLAN----------------------------LEKLYLCSNKISKIE--NVDHLKKL 149 (319)
Q Consensus 102 l~~L~~L~l~~~~~~~l~--~~~~l~~----------------------------L~~L~l~~~~~~~~~--~~~~~~~L 149 (319)
+++|++|++++|.+..++ .+..+++ |+.|++++|.++.+. .+..+++|
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 555555555555554432 1334444 444444555554432 46667777
Q ss_pred cEEEccCCcCcC-c--cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCC---Cc-CCcCCCCCCeEec
Q psy14728 150 KVLELGDNKIRI-I--ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRT---IE-NLEALTNLTQLYL 220 (319)
Q Consensus 150 ~~L~l~~~~~~~-~--~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~---~~-~~~~~~~L~~L~l 220 (319)
++|++++|.+.. + ..+.++++|++|++++|.+... ..+..+++|+.|++++|.+.. .| .+..+++|+.|++
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 788877777642 2 3566777888888888776654 356677888888888887653 22 4778899999999
Q ss_pred cCCcCcCccc--cCCCCCccEEEccCCCCCCcc----------ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEE
Q psy14728 221 SENGLTTIEN--LLSNEKLETLDVAYNKISIIQ----------NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIY 288 (319)
Q Consensus 221 ~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~----------~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 288 (319)
++|++++++. +..+++|+.|++++|.++.++ .+.++++|++|++++|+++..+ ...+.++++|+.|+
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP-VEVFKDLFELKIID 566 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEE
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC-HHHcccccCcceeE
Confidence 9999998764 788899999999999887541 2678899999999999998643 25688999999999
Q ss_pred cCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 289 LDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 289 l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
+++|.++..+.. .+..++.|+.|+++++
T Consensus 567 Ls~N~l~~l~~~---~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 567 LGLNNLNTLPAS---VFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CCSSCCCCCCTT---TTTTCTTCCEEECTTS
T ss_pred CCCCCCCcCCHh---HhCCCCCCCEEECCCC
Confidence 999999988773 4678899999999864
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=9.7e-26 Score=219.66 Aligned_cols=235 Identities=24% Similarity=0.261 Sum_probs=139.7
Q ss_pred CceEEEEEeeeccc------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCc-c-ccccCCCCCEE
Q psy14728 15 DNLVTLNVEAVENT------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKI-E-NIHMLTTLKEL 86 (319)
Q Consensus 15 ~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~-~~~~~~~L~~L 86 (319)
.+++.++++.+... ..+...|+.++++.+......+ ...+..+++|++|++++|.+..+ + .+..+++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 55666666654432 2223345555555553322221 24566666666666666666654 2 35666666666
Q ss_pred EccCCCccC--ccC--CCCCCCCcEEEccCCCCcccc---CCCCCCCccEEEccCCcccccC------------------
Q psy14728 87 ELYDNQLTV--IEN--LDTLINLEILDLSFNRIREIK---GLDHLANLEKLYLCSNKISKIE------------------ 141 (319)
Q Consensus 87 ~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~~~~l~---~~~~l~~L~~L~l~~~~~~~~~------------------ 141 (319)
++++|.++. ++. +..+++|++|++++|.+..++ .+..+++|++|++++|.++...
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 666666653 222 556666666666666655442 2455556666666555442210
Q ss_pred ----------CCCC------------------------------------------------------------------
Q psy14728 142 ----------NVDH------------------------------------------------------------------ 145 (319)
Q Consensus 142 ----------~~~~------------------------------------------------------------------ 145 (319)
.+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 0000
Q ss_pred --CCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCC--cCCcCCCCCCe
Q psy14728 146 --LKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQ 217 (319)
Q Consensus 146 --~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~ 217 (319)
.++|+.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|++..+ ..+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 13455555555544322 2366778888888888887765 3577788888888888887765 24677788888
Q ss_pred EeccCCcCcCccc--cCCCCCccEEEccCCCCCCc
Q psy14728 218 LYLSENGLTTIEN--LLSNEKLETLDVAYNKISII 250 (319)
Q Consensus 218 L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~ 250 (319)
|++++|.++.++. +..+++|+.|++++|.++.+
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 8888888777653 66777788888877776654
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=4.1e-25 Score=205.55 Aligned_cols=173 Identities=24% Similarity=0.288 Sum_probs=109.4
Q ss_pred CCCccEEEccCCccccc-----CCCCCCCCccEEEccCCcCcCcc----ccCCCCCccEEEcCCCCCcccc-CCCCCCCC
Q psy14728 124 LANLEKLYLCSNKISKI-----ENVDHLKKLKVLELGDNKIRIIE----NLDGLTNLEELYLGKNKISRID-NLASLTKL 193 (319)
Q Consensus 124 l~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~~-~l~~~~~L 193 (319)
+++|+.|++++|.+++. ..+..+++|++|++++|.+..++ .+..+++|++|++++|.+..++ .+..+++|
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L 412 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM 412 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTC
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccc
Confidence 45555555555555441 12455556666666665554332 2455556666666666555542 34455566
Q ss_pred CEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCc
Q psy14728 194 NILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWN 273 (319)
Q Consensus 194 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 273 (319)
++|++++|+++.++. ..+++|++|++++|++++++ ..+++|++|++++|+++.++....+++|++|++++|++++.
T Consensus 413 ~~L~Ls~N~l~~l~~-~~~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~- 488 (549)
T 2z81_A 413 RFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSV- 488 (549)
T ss_dssp CEEECTTSCCSCCCT-TSCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCC-
T ss_pred cEEECCCCCcccccc-hhcCCceEEECCCCChhhhc--ccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCc-
Confidence 666666666555432 11246666666666665543 46778888888888888777667788888888888888874
Q ss_pred ccccccCCCCCcEEEcCCCcCcCChhh
Q psy14728 274 TVNVLENNKQLQTIYLDRNPVAQDPNY 300 (319)
Q Consensus 274 ~~~~~~~~~~L~~L~l~~n~~~~~~~~ 300 (319)
.+..+..+++|+.|++++|++.+.+..
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 489 PDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred CHHHHhcCcccCEEEecCCCccCCCcc
Confidence 335577888888888888888887764
No 44
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.94 E-value=4.8e-26 Score=196.56 Aligned_cols=195 Identities=30% Similarity=0.407 Sum_probs=133.7
Q ss_pred ccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccC
Q psy14728 55 ESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCS 134 (319)
Q Consensus 55 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~ 134 (319)
...+++|+.|+++++.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.+..++.+..+++|++|++++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCC
Confidence 44577777777777777777777777777777777777776555777777777777777777766677777777777777
Q ss_pred CcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCC
Q psy14728 135 NKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTN 214 (319)
Q Consensus 135 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 214 (319)
|.++.++.+..+++|++|++++|.+..++.+..+++|++|++++|.+.+++.+..+++|+.|++++|+++.++.+..+++
T Consensus 117 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~ 196 (308)
T 1h6u_A 117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPN 196 (308)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred CCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCC
Confidence 77776666666777777777777666555566666666666666666665556666666666666666666555666666
Q ss_pred CCeEeccCCcCcCccccCCCCCccEEEccCCCCCC
Q psy14728 215 LTQLYLSENGLTTIENLLSNEKLETLDVAYNKISI 249 (319)
Q Consensus 215 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 249 (319)
|++|++++|++++++.+..+++|+.|++++|.++.
T Consensus 197 L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 197 LIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred CCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 66666666666666556666666666666666554
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=217.44 Aligned_cols=264 Identities=20% Similarity=0.244 Sum_probs=176.9
Q ss_pred cccccCCCCcchhhhhccCchhhcccccccceEEEecCCcc-cCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCC
Q psy14728 31 NQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLI-KKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINL 105 (319)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L 105 (319)
....++.++++.+...+..+ ..+..+++|++|++++|.. ..++ .+.++++|++|++++|.++.+ +.+.++++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~--~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTA--SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEECS--SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccCh--hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 33467788898887766544 7799999999999999954 4452 589999999999999999853 569999999
Q ss_pred cEEEccCCCCcc-cc-C--CCCCCCccEEEccCCcccccC---CCCCCCCccEEEccCCcCcCc--cccCCC--CC----
Q psy14728 106 EILDLSFNRIRE-IK-G--LDHLANLEKLYLCSNKISKIE---NVDHLKKLKVLELGDNKIRII--ENLDGL--TN---- 170 (319)
Q Consensus 106 ~~L~l~~~~~~~-l~-~--~~~l~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~--~~l~~~--~~---- 170 (319)
++|++++|.+.. ++ . +..+++|++|++++|.++... .+..+++|++|++++|.+... ..+..+ ++
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 999999999986 33 3 889999999999999998753 578999999999999877432 222222 34
Q ss_pred --------------------------ccEEEcCCCCCccc--c------------------------------------C
Q psy14728 171 --------------------------LEELYLGKNKISRI--D------------------------------------N 186 (319)
Q Consensus 171 --------------------------L~~L~l~~~~l~~~--~------------------------------------~ 186 (319)
|+.|++++|.+... . .
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 55555555432210 0 0
Q ss_pred CCC--CCCCCEEECCCCCCCCC--cCCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCC
Q psy14728 187 LAS--LTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTE 258 (319)
Q Consensus 187 l~~--~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~ 258 (319)
+.. .++|+.|++++|.+..+ ..+..+++|+.|++++|.+++++ .+..+++|++|++++|.++.+ ..+..+++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 001 13455566666555443 12555666666666666666542 255566666666666666543 24556666
Q ss_pred CcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCC
Q psy14728 259 LQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD 297 (319)
Q Consensus 259 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 297 (319)
|++|++++|.+...+ ...+..+++|+.|++++|.++..
T Consensus 340 L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp CCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCCCCcc
Confidence 666666666665532 23455566666666666666544
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.9e-27 Score=203.15 Aligned_cols=216 Identities=23% Similarity=0.271 Sum_probs=116.1
Q ss_pred cccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEE
Q psy14728 54 EESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLY 131 (319)
Q Consensus 54 ~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~ 131 (319)
.+..+++|++|++++|.++.++ .+..+++|++|++++|.++....+..+++|++|++++|.+..++. .++|++|+
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L~ 105 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV---GPSIETLH 105 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE---CTTCCEEE
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC---CCCcCEEE
Confidence 3445666777777777766654 366677777777777766644446666677777777776665542 25666666
Q ss_pred ccCCcccccCCCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCC
Q psy14728 132 LCSNKISKIENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL 209 (319)
Q Consensus 132 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 209 (319)
+++|.++.++. ..+++|++|++++|.+.... .+..+++|++|++++|.+.+.. ...+
T Consensus 106 l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------------------~~~~ 164 (317)
T 3o53_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--------------------FAEL 164 (317)
T ss_dssp CCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE--------------------GGGG
T ss_pred CCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc--------------------HHHH
Confidence 66666655432 12455555555555554332 2344455555555555544431 0111
Q ss_pred -cCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCc-cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEE
Q psy14728 210 -EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII-QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTI 287 (319)
Q Consensus 210 -~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 287 (319)
..+++|++|++++|.++.++....+++|++|++++|.++.+ +.+..+++|++|++++|+++.. +..+..+++|+.|
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~l~~L~~L 242 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHF 242 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEE
T ss_pred hhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch--hhHhhcCCCCCEE
Confidence 23445555555555555444444445555555555555443 2344555555555555555532 2334455555555
Q ss_pred EcCCCcCc
Q psy14728 288 YLDRNPVA 295 (319)
Q Consensus 288 ~l~~n~~~ 295 (319)
++++|++.
T Consensus 243 ~l~~N~~~ 250 (317)
T 3o53_A 243 DLRGNGFH 250 (317)
T ss_dssp ECTTCCCB
T ss_pred EccCCCcc
Confidence 55555555
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=2.9e-25 Score=193.53 Aligned_cols=256 Identities=22% Similarity=0.268 Sum_probs=209.0
Q ss_pred ccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCc-c-ccccCCCCCEEEccCCCccCccCCCCCCCCcEEEcc
Q psy14728 34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKI-E-NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLS 111 (319)
Q Consensus 34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 111 (319)
.++.++++.+...+..+ ..+..+++|++|++++|.++++ + .+..+++|++|++++|.++.++.- ..++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKD--GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCT--TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-CCTTCCEEECC
T ss_pred CCeEEECCCCcCCEeCh--hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-hcccccEEECC
Confidence 45666777776655433 5688999999999999999987 3 589999999999999999866542 22899999999
Q ss_pred CCCCcccc--CCCCCCCccEEEccCCcccc--c--CCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc-
Q psy14728 112 FNRIREIK--GLDHLANLEKLYLCSNKISK--I--ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI- 184 (319)
Q Consensus 112 ~~~~~~l~--~~~~l~~L~~L~l~~~~~~~--~--~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~- 184 (319)
+|.+..++ .+..+++|+.|++++|.++. . ..+..+++|++|++++|.+..++... .++|++|++++|.+.+.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVD 208 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEEC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccC
Confidence 99999876 37889999999999999864 2 35788999999999999987665322 28999999999998876
Q ss_pred -cCCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCCCccc--cc----
Q psy14728 185 -DNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKISIIQN--IA---- 254 (319)
Q Consensus 185 -~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--l~---- 254 (319)
..+..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+|. +..+++|++|++++|.++.++. +.
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 46889999999999999998764 47889999999999999999875 8889999999999999987642 32
Q ss_pred --cCCCCcEEEcCCCcCCCCccc-ccccCCCCCcEEEcCCCc
Q psy14728 255 --HLTELQEFWINDNQVSDWNTV-NVLENNKQLQTIYLDRNP 293 (319)
Q Consensus 255 --~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~ 293 (319)
..++++.+++++|.+..+... ..+..+++++.+++++|+
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 347899999999999765443 567888999999999984
No 48
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.94 E-value=1.5e-25 Score=193.51 Aligned_cols=213 Identities=26% Similarity=0.367 Sum_probs=190.4
Q ss_pred ceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCccccc
Q psy14728 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140 (319)
Q Consensus 61 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~ 140 (319)
+..+.+....+.++.....+++|++|++++|.++.++.+..+++|++|++++|.+..++.+..+++|++|++++|.++.+
T Consensus 21 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~ 100 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV 100 (308)
T ss_dssp HHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC
T ss_pred HHHHHhCCCCcCceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc
Confidence 33345566677776667789999999999999998888999999999999999999888888999999999999999998
Q ss_pred CCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEec
Q psy14728 141 ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYL 220 (319)
Q Consensus 141 ~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 220 (319)
+.+..+++|++|++++|.+..++.+..+++|++|++++|.+..++.+..+++|+.|++++|+++.++.+..+++|+.|++
T Consensus 101 ~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180 (308)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred hhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence 88999999999999999998887888999999999999999888778899999999999999988877889999999999
Q ss_pred cCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCc
Q psy14728 221 SENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWN 273 (319)
Q Consensus 221 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 273 (319)
++|.+++++.+..+++|++|++++|.++.++.+..+++|++|++++|+++..+
T Consensus 181 ~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCC
T ss_pred CCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCC
Confidence 99999988888889999999999999998877889999999999999988743
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1e-24 Score=190.23 Aligned_cols=251 Identities=25% Similarity=0.339 Sum_probs=209.7
Q ss_pred ccceEEEecCCcccCccccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccC
Q psy14728 59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCS 134 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~ 134 (319)
.+++.++++++.++.+|.- -.++|++|++++|.++.+ ..+.++++|++|++++|.+..++ .+..+++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3799999999999988742 247999999999999865 35899999999999999999873 588999999999999
Q ss_pred CcccccCCCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccc----cCCCCCCCCCEEECCCCCCCCCcC
Q psy14728 135 NKISKIENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRI----DNLASLTKLNILSLQCNRLRTIEN 208 (319)
Q Consensus 135 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~----~~l~~~~~L~~L~l~~~~~~~~~~ 208 (319)
|.++.++.-.. ++|++|++++|.+..++ .+..+++|++|++++|.+... ..+..+ +|+.|++++|+++.+|.
T Consensus 112 n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 112 NHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK 189 (332)
T ss_dssp SCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred CcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc
Confidence 99998764322 89999999999998654 378899999999999998642 345556 89999999999998765
Q ss_pred CcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCCCcccccccCCCCC
Q psy14728 209 LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQL 284 (319)
Q Consensus 209 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 284 (319)
...++|++|++++|.+++++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+++.. +..+..+++|
T Consensus 190 -~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l--p~~l~~l~~L 266 (332)
T 2ft3_A 190 -DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV--PAGLPDLKLL 266 (332)
T ss_dssp -SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC--CTTGGGCTTC
T ss_pred -cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec--ChhhhcCccC
Confidence 22389999999999999875 4889999999999999998764 588999999999999999964 3568899999
Q ss_pred cEEEcCCCcCcCChhhHHHHHH------hCCceEEEeccc
Q psy14728 285 QTIYLDRNPVAQDPNYRRKIKL------VCPWIVQIDATL 318 (319)
Q Consensus 285 ~~L~l~~n~~~~~~~~~~~~~~------~~~~L~~l~~~~ 318 (319)
+.|++++|+++..+.. .+. ..+.++.+++++
T Consensus 267 ~~L~l~~N~l~~~~~~---~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVN---DFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CEEECCSSCCCBCCTT---SSSCSSCCSSSCCBSEEECCS
T ss_pred CEEECCCCCCCccChh---HccccccccccccccceEeec
Confidence 9999999999987652 111 146788888765
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.4e-25 Score=195.94 Aligned_cols=240 Identities=25% Similarity=0.352 Sum_probs=194.6
Q ss_pred ccceEEEecCCcccCccc--cccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccC--CCCCCCccEEEc
Q psy14728 59 VCIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYL 132 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l 132 (319)
++|++|+++++.++.++. +..+++|++|++++|+++.+ ..+.++++|++|++++|.++.++. +..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 589999999999887753 88899999999999988754 348888999999999999888763 778899999999
Q ss_pred cCCcccccCC---CCCCCCccEEEccCCc-CcCc--cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCC
Q psy14728 133 CSNKISKIEN---VDHLKKLKVLELGDNK-IRII--ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLR 204 (319)
Q Consensus 133 ~~~~~~~~~~---~~~~~~L~~L~l~~~~-~~~~--~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~ 204 (319)
++|.++.++. +..+++|++|++++|. +..+ ..+.++++|++|++++|.+.+. ..+..+++|++|++++|++.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9998888754 7788999999998874 4433 3577888999999999888775 46788889999999999887
Q ss_pred CCcC--CcCCCCCCeEeccCCcCcCccc-----cCCCCCccEEEccCCCCCC------ccccccCCCCcEEEcCCCcCCC
Q psy14728 205 TIEN--LEALTNLTQLYLSENGLTTIEN-----LLSNEKLETLDVAYNKISI------IQNIAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 205 ~~~~--~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~------~~~l~~~~~L~~L~l~~n~~~~ 271 (319)
.++. +..+++|+.|++++|.+++.+. ......++.++++++.+++ ++.+..+++|++|++++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 7654 4467899999999998886532 3456778888888888764 2347789999999999999997
Q ss_pred CcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728 272 WNTVNVLENNKQLQTIYLDRNPVAQDPN 299 (319)
Q Consensus 272 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 299 (319)
.+. ..+..+++|+.|++++|++.+++.
T Consensus 292 i~~-~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 292 VPD-GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCH-HHHhcCCCCCEEEeeCCCccCcCC
Confidence 432 446899999999999999999986
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=9.7e-27 Score=201.79 Aligned_cols=228 Identities=22% Similarity=0.263 Sum_probs=185.4
Q ss_pred ccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCC
Q psy14728 34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFN 113 (319)
Q Consensus 34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 113 (319)
.++.++++.+...+..+ ..+..+++|+.|++++|.+++++.+..+++|++|++++|.++.++ ..++|++|++++|
T Consensus 35 ~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~~n 109 (317)
T 3o53_A 35 NVKELDLSGNPLSQISA--ADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL---VGPSIETLHAANN 109 (317)
T ss_dssp GCSEEECTTSCCCCCCH--HHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSS
T ss_pred CCCEEECcCCccCcCCH--HHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc---CCCCcCEEECCCC
Confidence 57778888887766543 678999999999999999998777999999999999999988654 3489999999999
Q ss_pred CCccccCCCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCc--ccc-CCCCCccEEEcCCCCCccccCCC
Q psy14728 114 RIREIKGLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRII--ENL-DGLTNLEELYLGKNKISRIDNLA 188 (319)
Q Consensus 114 ~~~~l~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l-~~~~~L~~L~l~~~~l~~~~~l~ 188 (319)
.+..++. ..+++|++|++++|.++.++ .+..+++|++|++++|.+... ..+ ..+++|++|++++|.+..++...
T Consensus 110 ~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 188 (317)
T 3o53_A 110 NISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188 (317)
T ss_dssp CCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred ccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc
Confidence 9988763 23788999999999999874 677899999999999998744 234 46789999999999988877666
Q ss_pred CCCCCCEEECCCCCCCCCc-CCcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCC-C-c-cccccCCCCcEEE
Q psy14728 189 SLTKLNILSLQCNRLRTIE-NLEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKIS-I-I-QNIAHLTELQEFW 263 (319)
Q Consensus 189 ~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~-~-~-~~l~~~~~L~~L~ 263 (319)
.+++|++|++++|+++.++ .+..+++|+.|++++|.++.+|. +..+++|+.|++++|.+. . + .++..+++|+.++
T Consensus 189 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 7888888888888887763 47777888888888888887764 677788888888888876 2 2 3466777788777
Q ss_pred cCCC
Q psy14728 264 INDN 267 (319)
Q Consensus 264 l~~n 267 (319)
++++
T Consensus 269 l~~~ 272 (317)
T 3o53_A 269 KQTV 272 (317)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7754
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=7.4e-24 Score=198.22 Aligned_cols=234 Identities=20% Similarity=0.256 Sum_probs=204.8
Q ss_pred ccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCccc
Q psy14728 59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS 138 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~ 138 (319)
++|+.|++++|.++.++. .+++|++|++++|+++.++. .+++|++|++++|.++.+|. .+++|+.|++++|.++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCS
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCC
Confidence 789999999999999877 68999999999999987765 78999999999999999887 6789999999999999
Q ss_pred ccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeE
Q psy14728 139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218 (319)
Q Consensus 139 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L 218 (319)
.++.. +++|++|++++|.+..++. ..++|+.|++++|.+..++ ..+++|+.|++++|.++.++. .+++|+.|
T Consensus 135 ~lp~~--l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~--~~~~L~~L 206 (622)
T 3g06_A 135 SLPVL--PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT--LPSELYKL 206 (622)
T ss_dssp CCCCC--CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEE
T ss_pred cCCCC--CCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC--ccchhhEE
Confidence 88753 5999999999999876654 4578999999999998887 567899999999999998765 35899999
Q ss_pred eccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCCh
Q psy14728 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP 298 (319)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 298 (319)
++++|.++.++.. +++|+.|++++|.++.++ ..+++|++|++++|.++.++. .+++|+.|++++|.++..|
T Consensus 207 ~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp 277 (622)
T 3g06_A 207 WAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLP 277 (622)
T ss_dssp ECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCC
T ss_pred ECcCCcccccCCC--CCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCC
Confidence 9999999988753 588999999999999887 567899999999999997542 6789999999999999888
Q ss_pred hhHHHHHHhCCceEEEecccC
Q psy14728 299 NYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 299 ~~~~~~~~~~~~L~~l~~~~C 319 (319)
.. +..+++|+.|+++++
T Consensus 278 ~~----l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 278 ES----LIHLSSETTVNLEGN 294 (622)
T ss_dssp GG----GGGSCTTCEEECCSC
T ss_pred HH----HhhccccCEEEecCC
Confidence 73 678999999999875
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=2.7e-24 Score=203.04 Aligned_cols=113 Identities=21% Similarity=0.222 Sum_probs=83.0
Q ss_pred CCCCEEECCCCCCCC--Cc-CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEE
Q psy14728 191 TKLNILSLQCNRLRT--IE-NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFW 263 (319)
Q Consensus 191 ~~L~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~ 263 (319)
+.++.|++++|.+.. .+ .+..+++|+.|++++|++++++ .+..+++|++|++++|+++.++ .+.++++|++|+
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 344444554443221 12 3667788888899888888764 3788889999999999888763 477888999999
Q ss_pred cCCCcCCCCcccccccCC-CCCcEEEcCCCcCcCChhhHHHH
Q psy14728 264 INDNQVSDWNTVNVLENN-KQLQTIYLDRNPVAQDPNYRRKI 304 (319)
Q Consensus 264 l~~n~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~ 304 (319)
+++|++++. .+..+..+ ++|+.|++++||+.|++...+..
T Consensus 549 Ls~N~l~~~-~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~ 589 (635)
T 4g8a_A 549 YSLNHIMTS-KKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 589 (635)
T ss_dssp CTTSCCCBC-CSSCTTCCCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred CCCCcCCCC-CHHHHHhhhCcCCEEEeeCCCCcccCCcHHHH
Confidence 999998884 33566666 57999999999999988876543
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-25 Score=205.59 Aligned_cols=231 Identities=24% Similarity=0.289 Sum_probs=157.3
Q ss_pred cccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEcc
Q psy14728 56 SKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC 133 (319)
Q Consensus 56 ~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~ 133 (319)
..+++|+.|++++|.+.+++ .+..+++|++|++++|.++....+..+++|++|++++|.+..++.. ++|+.|+++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~ 107 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG---PSIETLHAA 107 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC---TTCCEEECC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC---CCcCEEECc
Confidence 35668888888888888764 4778888888888888887554478888888888888887776533 678888888
Q ss_pred CCcccccCCCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCccc--cCCC-CCCCCCEEECCCCCCCCCcC
Q psy14728 134 SNKISKIENVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI--DNLA-SLTKLNILSLQCNRLRTIEN 208 (319)
Q Consensus 134 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~--~~l~-~~~~L~~L~l~~~~~~~~~~ 208 (319)
+|.++.++. ..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+. .+++|+.|++++|.++.++.
T Consensus 108 ~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 888777543 2357777777777777643 2456677777777777776654 2333 56677777777777766655
Q ss_pred CcCCCCCCeEeccCCcCcCcc-ccCCCCCccEEEccCCCCCCcc-ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcE
Q psy14728 209 LEALTNLTQLYLSENGLTTIE-NLLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT 286 (319)
Q Consensus 209 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 286 (319)
...+++|+.|++++|.+++++ .+..+++|+.|++++|.+++++ .+..+++|+.|++++|.+.....+..+..++.++.
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~ 266 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHH
T ss_pred cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcE
Confidence 556677777777777776654 3556666777777777666543 35566667777777776663233344555555555
Q ss_pred EEcC
Q psy14728 287 IYLD 290 (319)
Q Consensus 287 L~l~ 290 (319)
++++
T Consensus 267 l~~~ 270 (487)
T 3oja_A 267 VAKQ 270 (487)
T ss_dssp HHHH
T ss_pred Eecc
Confidence 5553
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.8e-25 Score=192.19 Aligned_cols=236 Identities=19% Similarity=0.218 Sum_probs=198.1
Q ss_pred ccceEEEecCCcccC---cc-ccccCCCCCEEEccC-CCcc-C-ccCCCCCCCCcEEEccCCCCc-ccc-CCCCCCCccE
Q psy14728 59 VCIERLLLRWNLIKK---IE-NIHMLTTLKELELYD-NQLT-V-IENLDTLINLEILDLSFNRIR-EIK-GLDHLANLEK 129 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~---l~-~~~~~~~L~~L~l~~-~~~~-~-~~~~~~l~~L~~L~l~~~~~~-~l~-~~~~l~~L~~ 129 (319)
.+++.|+++++.+.+ ++ .+..+++|++|++++ |.+. . ++.+.++++|++|++++|.+. .+| .+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999985 44 589999999999995 8776 3 345899999999999999998 455 4888999999
Q ss_pred EEccCCcccc-cC-CCCCCCCccEEEccCCcCc--CccccCCCC-CccEEEcCCCCCccc--cCCCCCCCCCEEECCCCC
Q psy14728 130 LYLCSNKISK-IE-NVDHLKKLKVLELGDNKIR--IIENLDGLT-NLEELYLGKNKISRI--DNLASLTKLNILSLQCNR 202 (319)
Q Consensus 130 L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~--~~~~l~~~~-~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~ 202 (319)
|++++|.+++ .+ .+..+++|++|++++|.+. .+..+..++ +|++|++++|.+.+. ..+..++ |+.|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 9999999985 44 6888999999999999986 445678887 999999999998743 4566666 9999999999
Q ss_pred CCCC--cCCcCCCCCCeEeccCCcCcCc-cccCCCCCccEEEccCCCCC-Cc-cccccCCCCcEEEcCCCcCCCCccccc
Q psy14728 203 LRTI--ENLEALTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKIS-II-QNIAHLTELQEFWINDNQVSDWNTVNV 277 (319)
Q Consensus 203 ~~~~--~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~ 277 (319)
+... ..+..+++|+.|++++|.+++. +.+..+++|++|++++|.++ .+ .++..+++|++|++++|++++. .+.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~- 286 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQ- 286 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE-CCC-
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc-CCC-
Confidence 8753 3478999999999999999864 55788899999999999997 33 5688999999999999999863 333
Q ss_pred ccCCCCCcEEEcCCCcCcCC
Q psy14728 278 LENNKQLQTIYLDRNPVAQD 297 (319)
Q Consensus 278 ~~~~~~L~~L~l~~n~~~~~ 297 (319)
...+++|+.+++++|+..+.
T Consensus 287 ~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp STTGGGSCGGGTCSSSEEES
T ss_pred CccccccChHHhcCCCCccC
Confidence 37889999999999996554
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=8.4e-24 Score=191.48 Aligned_cols=213 Identities=28% Similarity=0.426 Sum_probs=187.2
Q ss_pred ccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEc
Q psy14728 59 VCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYL 132 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l 132 (319)
++++.|++++|.+..++ .+..+++|++|++++|.++.+ ..+.++++|++|++++|.++.++ .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 67999999999999774 589999999999999999855 35899999999999999999887 3888999999999
Q ss_pred cCCcccccC--CCCCCCCccEEEccCCc-CcCc--cccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc
Q psy14728 133 CSNKISKIE--NVDHLKKLKVLELGDNK-IRII--ENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE 207 (319)
Q Consensus 133 ~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~--~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~ 207 (319)
++|.++.++ .+..+++|++|+++++. +..+ ..+.++++|++|++++|.+..++.+..+++|++|++++|+++.++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccC
Confidence 999999876 58899999999999844 4433 257889999999999999999999999999999999999998753
Q ss_pred --CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCC
Q psy14728 208 --NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 208 --~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~ 271 (319)
.+..+++|+.|++++|+++.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.+..
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 4889999999999999999875 3788999999999999999764 37889999999999998754
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=4.2e-23 Score=176.16 Aligned_cols=216 Identities=23% Similarity=0.313 Sum_probs=133.4
Q ss_pred eEEEecCCcccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCc-
Q psy14728 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNK- 136 (319)
Q Consensus 62 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~- 136 (319)
+.+++++..++.+|. ...++|++|++++|.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 566777777776653 23467777777777776443 3667777777777777776653 46666667777776665
Q ss_pred ccccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCcC--Cc
Q psy14728 137 ISKIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--LE 210 (319)
Q Consensus 137 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~~--~~ 210 (319)
++.++ .+..+++|++|++++|.+ ... ..+..+++|++|++++|++..++. +.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 150 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGL----------------------QELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCC----------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcC----------------------CEECHhHhhCCcCCCEEECCCCcccccCHhHhc
Confidence 55442 344455555555555444 433 224445555555555555554432 55
Q ss_pred CCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcE
Q psy14728 211 ALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT 286 (319)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 286 (319)
.+++|++|++++|++++++. +..+++|++|++++|.++.+ ..+..+++|++|++++|++++.+ ...+..+++|+.
T Consensus 151 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 229 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQY 229 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCE
T ss_pred cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHHcccCcccCE
Confidence 56666666666666665543 56666777777777766643 34666777777777777777632 245667777777
Q ss_pred EEcCCCcCcCChhhH
Q psy14728 287 IYLDRNPVAQDPNYR 301 (319)
Q Consensus 287 L~l~~n~~~~~~~~~ 301 (319)
|++++|++.+++...
T Consensus 230 L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 230 LRLNDNPWVCDCRAR 244 (285)
T ss_dssp EECCSSCEECSGGGH
T ss_pred EeccCCCccCCCCcH
Confidence 777777777766653
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.2e-23 Score=191.01 Aligned_cols=213 Identities=28% Similarity=0.374 Sum_probs=187.7
Q ss_pred ccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccC--CCCCCCccEEEc
Q psy14728 59 VCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYL 132 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l 132 (319)
++++.|++++|.++.++ .+..+++|++|++++|.++.+ ..+.++++|++|++++|.+..++. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 58999999999999873 589999999999999999855 458999999999999999998873 888999999999
Q ss_pred cCCcccccC--CCCCCCCccEEEccCC-cCcCcc--ccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc
Q psy14728 133 CSNKISKIE--NVDHLKKLKVLELGDN-KIRIIE--NLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE 207 (319)
Q Consensus 133 ~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~ 207 (319)
++|.++.++ .+..+++|++|+++++ .+..++ .+.++++|++|++++|.+.+++.+..+++|+.|++++|++..++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccC
Confidence 999999876 5889999999999984 444333 47889999999999999999999999999999999999998763
Q ss_pred --CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCC
Q psy14728 208 --NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 208 --~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~ 271 (319)
.+..+++|+.|++++|+++.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.+..
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 4889999999999999999874 3888999999999999999764 37889999999999998754
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.6e-25 Score=199.83 Aligned_cols=231 Identities=22% Similarity=0.285 Sum_probs=194.2
Q ss_pred ccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEcc
Q psy14728 78 HMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELG 155 (319)
Q Consensus 78 ~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 155 (319)
..+++|++|++++|.++.+. .+..+++|++|++++|.+...+++..+++|++|++++|.+++++.. ++|++|+++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~ 107 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG---PSIETLHAA 107 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC---TTCCEEECC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC---CCcCEEECc
Confidence 35569999999999998653 5899999999999999999877799999999999999999987643 899999999
Q ss_pred CCcCcCccccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCC--cCCc-CCCCCCeEeccCCcCcCccc
Q psy14728 156 DNKIRIIENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTI--ENLE-ALTNLTQLYLSENGLTTIEN 230 (319)
Q Consensus 156 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~~~~~~~~~~ 230 (319)
+|.+..++. ..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++.. +.+. .+++|++|++++|.+++++.
T Consensus 108 ~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 999876653 3568999999999999886 3578899999999999999874 2344 78999999999999999988
Q ss_pred cCCCCCccEEEccCCCCCCc-cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCC
Q psy14728 231 LLSNEKLETLDVAYNKISII-QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCP 309 (319)
Q Consensus 231 ~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 309 (319)
...+++|+.|++++|.++++ +.+..+++|+.|++++|.+++. +..+..+++|+.|++++|++.+... ...+..++
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l--p~~l~~l~~L~~L~l~~N~l~c~~~--~~~~~~l~ 262 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQ 262 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTCCBCHHHH--HHHHTTCH
T ss_pred cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc--chhhccCCCCCEEEcCCCCCcCcch--HHHHHhCC
Confidence 88899999999999999976 5688999999999999999973 4567889999999999999984422 12344555
Q ss_pred ceEEEec
Q psy14728 310 WIVQIDA 316 (319)
Q Consensus 310 ~L~~l~~ 316 (319)
.++.+++
T Consensus 263 ~L~~l~~ 269 (487)
T 3oja_A 263 RVQTVAK 269 (487)
T ss_dssp HHHHHHH
T ss_pred CCcEEec
Confidence 5554443
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=1.3e-23 Score=181.11 Aligned_cols=239 Identities=23% Similarity=0.325 Sum_probs=195.5
Q ss_pred ccceEEEecCCcccCccc--cccCCCCCEEEccCCCccCc----cCCCCCCCCcEEEccCCCCcccc-CCCCCCCccEEE
Q psy14728 59 VCIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVI----ENLDTLINLEILDLSFNRIREIK-GLDHLANLEKLY 131 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~l~-~~~~l~~L~~L~ 131 (319)
+++++|+++++.++.++. +..+++|++|++++|.++.. ..+..+++|++|++++|.+..++ .+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 689999999999998874 78999999999999998743 34667899999999999999886 478899999999
Q ss_pred ccCCcccccC---CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCcc--c-cCCCCCCCCCEEECCCCCC
Q psy14728 132 LCSNKISKIE---NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISR--I-DNLASLTKLNILSLQCNRL 203 (319)
Q Consensus 132 l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~--~-~~l~~~~~L~~L~l~~~~~ 203 (319)
+++|.++..+ .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+ . ..+..+++|++|++++|++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 9999998864 588899999999999988633 357889999999999999876 3 5688899999999999999
Q ss_pred CCC--cCCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCc--cccccC-CCCcEEEcCCCcCCCCcccc
Q psy14728 204 RTI--ENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISII--QNIAHL-TELQEFWINDNQVSDWNTVN 276 (319)
Q Consensus 204 ~~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~l~~~-~~L~~L~l~~n~~~~~~~~~ 276 (319)
+.+ ..+..+++|++|++++|.+++++. +..+++|+.|++++|.+++. ..+..+ ++|++|++++|.+.......
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 875 347889999999999999998764 78899999999999999864 357777 49999999999998643221
Q ss_pred -cccCCCCCcEEEcCCCcCcCC
Q psy14728 277 -VLENNKQLQTIYLDRNPVAQD 297 (319)
Q Consensus 277 -~~~~~~~L~~L~l~~n~~~~~ 297 (319)
....+...+.+.+..+.+.+.
T Consensus 268 ~~~~~l~~~~~~~~~~~~~~C~ 289 (306)
T 2z66_A 268 SFLQWIKDQRQLLVEVERMECA 289 (306)
T ss_dssp HHHHHHHHTGGGBSCGGGCBEE
T ss_pred HHHHHHHhhhhhhccccccccC
Confidence 122333444455555555543
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.2e-23 Score=183.07 Aligned_cols=228 Identities=18% Similarity=0.187 Sum_probs=154.8
Q ss_pred cccceEEEecCCcccCccc-cccCCCCCEEEccCCCccCccC-CCCCCCCcEEEccCCCCcccc-CCCCCCCccEEEccC
Q psy14728 58 EVCIERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIK-GLDHLANLEKLYLCS 134 (319)
Q Consensus 58 ~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~ 134 (319)
.++++.|+++++.++.++. +..+++|++|++++|.++.++. ++.+++|++|++++|.+..+| .+..+++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 3567777777777776653 6667777777777777665433 667777777777777776665 466667777777776
Q ss_pred Ccccc-cC-CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc-cCCCCCCCCCEEECCCCCCCCCc-CCc
Q psy14728 135 NKISK-IE-NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI-DNLASLTKLNILSLQCNRLRTIE-NLE 210 (319)
Q Consensus 135 ~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~ 210 (319)
|.+.+ ++ .+.. . .....+.++++|++|++++|.+..+ ..+..+++|++|++++|++..++ .+.
T Consensus 160 n~~~~~~p~~~~~------~-------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~ 226 (328)
T 4fcg_A 160 CPELTELPEPLAS------T-------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226 (328)
T ss_dssp ETTCCCCCSCSEE------E-------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGG
T ss_pred CCCccccChhHhh------c-------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhc
Confidence 54332 22 1110 0 0011234567777777777777665 34667777888888888777754 467
Q ss_pred CCCCCCeEeccCCcCcC-cc-ccCCCCCccEEEccCCCCCC-c-cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcE
Q psy14728 211 ALTNLTQLYLSENGLTT-IE-NLLSNEKLETLDVAYNKISI-I-QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT 286 (319)
Q Consensus 211 ~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~-~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 286 (319)
.+++|++|++++|.+.+ +| .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+ ..+..+..+++++.
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS-RLPSLIAQLPANCI 305 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC-CCCGGGGGSCTTCE
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh-hccHHHhhccCceE
Confidence 78888888888877664 34 37778888888888877654 3 357888899999999988777 46678888899999
Q ss_pred EEcCCCcCcCChh
Q psy14728 287 IYLDRNPVAQDPN 299 (319)
Q Consensus 287 L~l~~n~~~~~~~ 299 (319)
+++..+.+.....
T Consensus 306 l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 306 ILVPPHLQAQLDQ 318 (328)
T ss_dssp EECCGGGSCC---
T ss_pred EeCCHHHHHHHhh
Confidence 9888876665443
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=7.4e-24 Score=180.87 Aligned_cols=190 Identities=28% Similarity=0.365 Sum_probs=130.9
Q ss_pred cccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCC-Ccccc--CCCCCCCccEE
Q psy14728 58 EVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNR-IREIK--GLDHLANLEKL 130 (319)
Q Consensus 58 ~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~-~~~l~--~~~~l~~L~~L 130 (319)
.++++.|+++++.++.++ .+..+++|++|++++|.++.+ ..+..+++|++|++++|. +..++ .+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 568999999999999876 488999999999999999854 458999999999999997 88773 58889999999
Q ss_pred EccCCcccccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCC
Q psy14728 131 YLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLR 204 (319)
Q Consensus 131 ~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~ 204 (319)
++++|.++..+ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|++.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999998864 4677788888888877766443 2555666666666666655542 2445555555555555554
Q ss_pred CC--cCCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCC
Q psy14728 205 TI--ENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKI 247 (319)
Q Consensus 205 ~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~ 247 (319)
.+ ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.+
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 32 124444444444444444444331 34444444444444443
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=185.12 Aligned_cols=261 Identities=21% Similarity=0.263 Sum_probs=217.4
Q ss_pred ccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEE
Q psy14728 55 ESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKL 130 (319)
Q Consensus 55 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L 130 (319)
...|+.....+++++.++.+|. .-.++|++|++++|+++.++ .+.++++|++|++++|.+..++ .+..+++|++|
T Consensus 27 ~~~C~~~~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CCEECTTSEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCCeEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4457777778999999999875 23469999999999998654 4899999999999999999875 48899999999
Q ss_pred EccCCcccccCC--CCCCCCccEEEccCCcCcCcc---ccCCCCCccEEEcCCCC-Cccc--cCCCCCCCCCEEECCCCC
Q psy14728 131 YLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIE---NLDGLTNLEELYLGKNK-ISRI--DNLASLTKLNILSLQCNR 202 (319)
Q Consensus 131 ~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~---~l~~~~~L~~L~l~~~~-l~~~--~~l~~~~~L~~L~l~~~~ 202 (319)
++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|++++|. +..+ ..+..+++|++|++++|+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999999998763 789999999999999987664 37889999999999984 6655 468889999999999999
Q ss_pred CCCC--cCCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCcc-----ccccCCCCcEEEcCCCcCCCCc
Q psy14728 203 LRTI--ENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQ-----NIAHLTELQEFWINDNQVSDWN 273 (319)
Q Consensus 203 ~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~-----~l~~~~~L~~L~l~~n~~~~~~ 273 (319)
+..+ ..+..+++|++|++++|.++.++. +..+++|++|++++|.++..+ .....+.++.++++++.+.+..
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 9875 348889999999999999988764 456899999999999988643 2345678899999999887632
Q ss_pred ---ccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 274 ---TVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 274 ---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
.+..+..+++|+.|++++|.++..|.. ++..+++|+.|+++++
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~---~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDG---IFDRLTSLQKIWLHTN 311 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSS
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCHH---HHhcCCCCCEEEeeCC
Confidence 234577899999999999999988773 4578999999999864
No 64
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=2.9e-24 Score=185.82 Aligned_cols=233 Identities=20% Similarity=0.226 Sum_probs=192.0
Q ss_pred cCCCCcchhhhhccCchhhcccccccceEEEecC-CcccC-cc-ccccCCCCCEEEccCCCcc-C-ccCCCCCCCCcEEE
Q psy14728 35 LDNPDEESEAETTESKAEDEESKEVCIERLLLRW-NLIKK-IE-NIHMLTTLKELELYDNQLT-V-IENLDTLINLEILD 109 (319)
Q Consensus 35 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-l~-~~~~~~~L~~L~l~~~~~~-~-~~~~~~l~~L~~L~ 109 (319)
+..++++.+...+.......+..+++|++|++++ +.+.+ ++ .+..+++|++|++++|.++ . +..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 4445555555554112236889999999999995 88774 45 5899999999999999997 3 34589999999999
Q ss_pred ccCCCCc-ccc-CCCCCCCccEEEccCCcccc-cC-CCCCCC-CccEEEccCCcCc--CccccCCCCCccEEEcCCCCCc
Q psy14728 110 LSFNRIR-EIK-GLDHLANLEKLYLCSNKISK-IE-NVDHLK-KLKVLELGDNKIR--IIENLDGLTNLEELYLGKNKIS 182 (319)
Q Consensus 110 l~~~~~~-~l~-~~~~l~~L~~L~l~~~~~~~-~~-~~~~~~-~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~l~ 182 (319)
+++|.+. .+| .+..+++|++|++++|.+++ ++ .+..++ +|++|++++|.+. .+..+..++ |++|++++|.+.
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 9999998 455 58889999999999999984 44 677787 9999999999886 334566666 999999999987
Q ss_pred cc--cCCCCCCCCCEEECCCCCCCC-CcCCcCCCCCCeEeccCCcCcC-cc-ccCCCCCccEEEccCCCCC-CccccccC
Q psy14728 183 RI--DNLASLTKLNILSLQCNRLRT-IENLEALTNLTQLYLSENGLTT-IE-NLLSNEKLETLDVAYNKIS-IIQNIAHL 256 (319)
Q Consensus 183 ~~--~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~-~~~~l~~~ 256 (319)
+. ..+..+++|+.|++++|+++. ++.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .++....+
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l 290 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccc
Confidence 64 457889999999999999985 4557889999999999999984 55 4888999999999999998 46667889
Q ss_pred CCCcEEEcCCCc
Q psy14728 257 TELQEFWINDNQ 268 (319)
Q Consensus 257 ~~L~~L~l~~n~ 268 (319)
++|+.+++++|+
T Consensus 291 ~~L~~l~l~~N~ 302 (313)
T 1ogq_A 291 QRFDVSAYANNK 302 (313)
T ss_dssp GGSCGGGTCSSS
T ss_pred cccChHHhcCCC
Confidence 999999999997
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=6e-24 Score=180.21 Aligned_cols=217 Identities=23% Similarity=0.312 Sum_probs=132.6
Q ss_pred cceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccc
Q psy14728 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISK 139 (319)
Q Consensus 60 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~ 139 (319)
++..+++..+.+.+......+++|+.|+++++.++.++.+..+++|++|++++|.+..++.+..+++|++|++++|.++.
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS 99 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc
Confidence 34444455555555544555666666666666665555555666666666666666555555556666666666666655
Q ss_pred cCC--CCCCCCccEEEccCCcCcCccc--cCCCCCccEEEcCCCCCccccC--CCCCCCCCEEECCCCCCCCCcC--CcC
Q psy14728 140 IEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEA 211 (319)
Q Consensus 140 ~~~--~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~--l~~~~~L~~L~l~~~~~~~~~~--~~~ 211 (319)
++. +..+++|++|++++|.+...+. +..+++|++|++++|.+..++. +..+++|+.|++++|+++.++. +..
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence 442 4556666666666666553332 5566667777776666665532 5566777777777777766543 566
Q ss_pred CCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccCCC
Q psy14728 212 LTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNK 282 (319)
Q Consensus 212 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 282 (319)
+++|++|++++|.+++++. +..+++|+.|++++|.+. ..+++|+++++.+|.+++ ..+..++.++
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----~~~~~l~~l~~~~n~~~g-~ip~~~~~~~ 246 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----CTCPGIRYLSEWINKHSG-VVRNSAGSVA 246 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-----CCTTTTHHHHHHHHHTGG-GBBCTTSCBC
T ss_pred CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-----ccCcHHHHHHHHHHhCCC-cccCcccccC
Confidence 7777777777777776653 566777777777777553 345667777777777766 3334444433
No 66
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=4.4e-22 Score=187.89 Aligned_cols=125 Identities=23% Similarity=0.232 Sum_probs=105.1
Q ss_pred cccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCcc--CCCCCCCCcEE
Q psy14728 33 MSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIE--NLDTLINLEIL 108 (319)
Q Consensus 33 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L 108 (319)
..++.+|++.+....-.+ ..|..+++|++|++++|.++.++ .|.++++|++|+|++|+++.++ .|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~--~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCH--HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 356778888887765443 67899999999999999999885 3889999999999999998654 38999999999
Q ss_pred EccCCCCcccc--CCCCCCCccEEEccCCcccccC---CCCCCCCccEEEccCCcC
Q psy14728 109 DLSFNRIREIK--GLDHLANLEKLYLCSNKISKIE---NVDHLKKLKVLELGDNKI 159 (319)
Q Consensus 109 ~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~ 159 (319)
++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 99999999887 3888999999999999987642 467789999999888765
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.4e-22 Score=174.79 Aligned_cols=214 Identities=18% Similarity=0.169 Sum_probs=144.3
Q ss_pred ccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccc-cccCCCCCEEEccCCCccCcc-CCCCCCCCcEEEcc
Q psy14728 34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVIE-NLDTLINLEILDLS 111 (319)
Q Consensus 34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~ 111 (319)
.+..++++.+... ..+ ..+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp--~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFP--DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCC--SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcC--hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 3555666666554 222 557789999999999999998874 899999999999999998654 58999999999999
Q ss_pred CCCCc-cccC-CC---------CCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCC
Q psy14728 112 FNRIR-EIKG-LD---------HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180 (319)
Q Consensus 112 ~~~~~-~l~~-~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~ 180 (319)
+|.+. .+|. +. .+++|++|++++|.++.++ ..+..+++|++|++++|.
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---------------------~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP---------------------ASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC---------------------GGGGGCTTCCEEEEESSC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch---------------------HhhcCCCCCCEEEccCCC
Confidence 97544 4442 22 2555555555555554433 234445555555555555
Q ss_pred Cccc-cCCCCCCCCCEEECCCCCCCC-Cc-CCcCCCCCCeEeccCCcCcC-cc-ccCCCCCccEEEccCCCCCC--cccc
Q psy14728 181 ISRI-DNLASLTKLNILSLQCNRLRT-IE-NLEALTNLTQLYLSENGLTT-IE-NLLSNEKLETLDVAYNKISI--IQNI 253 (319)
Q Consensus 181 l~~~-~~l~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~--~~~l 253 (319)
+.++ +.+..+++|+.|++++|.+.. +| .+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.+.+ ++++
T Consensus 218 l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 5544 235556666666666665543 22 36667777777777766543 34 36777788888888876643 3457
Q ss_pred ccCCCCcEEEcCCCcCCC
Q psy14728 254 AHLTELQEFWINDNQVSD 271 (319)
Q Consensus 254 ~~~~~L~~L~l~~n~~~~ 271 (319)
..+++|+.+++..+.+..
T Consensus 298 ~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp GGSCTTCEEECCGGGSCC
T ss_pred hhccCceEEeCCHHHHHH
Confidence 788888888887765544
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.2e-21 Score=167.34 Aligned_cols=200 Identities=24% Similarity=0.316 Sum_probs=120.4
Q ss_pred cccCCCCCEEEccCCCccCccC-CCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCcccccCCCCCCCCccEEE
Q psy14728 77 IHMLTTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLE 153 (319)
Q Consensus 77 ~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 153 (319)
+..+++++.++++++.++.++. + .++++.|++++|.+..++ .+..+++|+.|++++|.++.++....+++|++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 4556667777777776665442 2 256667777777666553 3556666666666666666555445555555555
Q ss_pred ccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc-
Q psy14728 154 LGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN- 230 (319)
Q Consensus 154 l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~- 230 (319)
+++|.+..++ ..+..+++|++|++++|+++.++ .+..+++|++|++++|+++.++.
T Consensus 84 Ls~N~l~~l~---------------------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 142 (290)
T 1p9a_G 84 LSHNQLQSLP---------------------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142 (290)
T ss_dssp CCSSCCSSCC---------------------CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCcCCcCc---------------------hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh
Confidence 5555544322 12344555555555555555543 25556666666666666666543
Q ss_pred -cCCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhH
Q psy14728 231 -LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYR 301 (319)
Q Consensus 231 -~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 301 (319)
+..+++|+.|++++|+++.++. +..+++|++|++++|+++.. +..+...++|+.+++++|++.+.+...
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i--p~~~~~~~~L~~l~L~~Np~~C~c~~~ 214 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI--PKGFFGSHLLPFAFLHGNPWLCNCEIL 214 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCCCSEEECCSCCBCCSGGGH
T ss_pred hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc--ChhhcccccCCeEEeCCCCccCcCccH
Confidence 4556667777777777666542 45667777777777777753 244555667777777777777766543
No 69
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.89 E-value=2.4e-23 Score=178.15 Aligned_cols=184 Identities=33% Similarity=0.467 Sum_probs=100.3
Q ss_pred EecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCC
Q psy14728 65 LLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVD 144 (319)
Q Consensus 65 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~ 144 (319)
.+....+.++.....+++|++|++++|.++.++.+..+++|++|++++|.+..++.+..+++|+.|++++|.++.++.+.
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~ 109 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLK 109 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGT
T ss_pred HhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhc
Confidence 34444444444444555555555555555555445555555555555555555544555555555555555555555555
Q ss_pred CCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCc
Q psy14728 145 HLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENG 224 (319)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 224 (319)
.+++|++|++++|.+..++.+..+++|+.|++++|.+.+++.+..+++|+.|++++|++..++.+..+++|+.|++++|.
T Consensus 110 ~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189 (291)
T ss_dssp TCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCc
Confidence 55555555555555554444555555555555555555554455555555555555555554445555555555555555
Q ss_pred CcCccccCCCCCccEEEccCCCCC
Q psy14728 225 LTTIENLLSNEKLETLDVAYNKIS 248 (319)
Q Consensus 225 ~~~~~~~~~~~~L~~L~l~~~~~~ 248 (319)
++.++.+..+++|+.|++++|.++
T Consensus 190 i~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 190 ISDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred CCCChhhccCCCCCEEECcCCccc
Confidence 555555555555555555555544
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=5.5e-24 Score=184.03 Aligned_cols=237 Identities=18% Similarity=0.159 Sum_probs=159.4
Q ss_pred cccccccceEEEecCCcccCccc-cccCCCCCEEEccCCCccC--ccC-CC-------CCCCCcEEEccCCCCcc-ccC-
Q psy14728 54 EESKEVCIERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTV--IEN-LD-------TLINLEILDLSFNRIRE-IKG- 120 (319)
Q Consensus 54 ~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~--~~~-~~-------~l~~L~~L~l~~~~~~~-l~~- 120 (319)
.+...++|+.++++++.+ .+|. +... |+.|++++|.++. ++. +. ++++|++|++++|.+.. +|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 445566677777777777 4442 3322 6677777776642 111 22 46777777777777763 442
Q ss_pred C--CCCCCccEEEccCCcccccC-CCCC-----CCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccc----cC
Q psy14728 121 L--DHLANLEKLYLCSNKISKIE-NVDH-----LKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRI----DN 186 (319)
Q Consensus 121 ~--~~l~~L~~L~l~~~~~~~~~-~~~~-----~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~----~~ 186 (319)
+ ..+++|++|++++|.+++.+ .+.. +++|++|++++|.+.... .+..+++|++|++++|.+.+. +.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 2 66777777777777776653 1222 277777777777776443 567777888888888775431 22
Q ss_pred C--CCCCCCCEEECCCCCCCCCcC-----CcCCCCCCeEeccCCcCcCcc---ccCCCCCccEEEccCCCCCCccccccC
Q psy14728 187 L--ASLTKLNILSLQCNRLRTIEN-----LEALTNLTQLYLSENGLTTIE---NLLSNEKLETLDVAYNKISIIQNIAHL 256 (319)
Q Consensus 187 l--~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~l~~~ 256 (319)
+ ..+++|++|++++|+++.++. +..+++|+.|++++|.+++.+ .+..+++|++|++++|.++.++....
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~- 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP- 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence 2 677888888888888875432 346688888888888887743 35566888888888888887654222
Q ss_pred CCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCC
Q psy14728 257 TELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD 297 (319)
Q Consensus 257 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 297 (319)
++|++|++++|++++.+ . +..+++|+.|++++|+++..
T Consensus 274 ~~L~~L~Ls~N~l~~~p--~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRNP--S-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSSCCCSCC--C-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCCCCCCCh--h-HhhCCCCCEEeccCCCCCCC
Confidence 78888888888888752 3 77888888888888887753
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.6e-21 Score=163.79 Aligned_cols=196 Identities=25% Similarity=0.377 Sum_probs=124.9
Q ss_pred CCCEEEccCCCccCccCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcC
Q psy14728 82 TLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKI 159 (319)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 159 (319)
+.+.++++++.++.++.- -.++|++|++++|.+..++ .+..+++|++|++++|.++.++.
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~----------------- 78 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA----------------- 78 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT-----------------
T ss_pred CCCEEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh-----------------
Confidence 456666666666654421 1145666666666665554 25555666666666655554431
Q ss_pred cCccccCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--cCC
Q psy14728 160 RIIENLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLS 233 (319)
Q Consensus 160 ~~~~~l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~ 233 (319)
..+..+++|++|++++|.+..++ .+..+++|++|++++|+++.++. +..+++|++|++++|.++.++. +..
T Consensus 79 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 79 ---GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp ---TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ---hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence 11334455555555555554442 34556666666666666665532 5677777777777777777654 667
Q ss_pred CCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728 234 NEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN 299 (319)
Q Consensus 234 ~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 299 (319)
+++|++|++++|.++.++ .+..+++|++|++++|+++..+ ...+..+++|+.|++++|++.+++.
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCCCeeCCCc
Confidence 788888888888877654 3677888888888888888743 2456778888888888888887754
No 72
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.89 E-value=8.7e-23 Score=174.64 Aligned_cols=193 Identities=28% Similarity=0.375 Sum_probs=172.1
Q ss_pred CCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCc
Q psy14728 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIR 160 (319)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 160 (319)
..+..+.+....++.+..+..+++|++|++++|.+..++++..+++|++|++++|.++.++.+..+++|++|++++|.+.
T Consensus 24 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred HHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCC
Confidence 33444556666666666677889999999999999999889999999999999999998877899999999999999998
Q ss_pred CccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEE
Q psy14728 161 IIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240 (319)
Q Consensus 161 ~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L 240 (319)
.++.+..+++|++|++++|.+.+++.+..+++|+.|++++|+++.++.+..+++|+.|++++|.+++++.+..+++|+.|
T Consensus 104 ~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L 183 (291)
T 1h6t_A 104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183 (291)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred CChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEE
Confidence 88889999999999999999998888889999999999999999888889999999999999999988778899999999
Q ss_pred EccCCCCCCccccccCCCCcEEEcCCCcCCCCc
Q psy14728 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWN 273 (319)
Q Consensus 241 ~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 273 (319)
++++|.++.++.+..+++|+.|++++|+++..+
T Consensus 184 ~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 184 YLSKNHISDLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ECCSSCCCBCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred ECCCCcCCCChhhccCCCCCEEECcCCcccCCc
Confidence 999999998888999999999999999887743
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=1.8e-23 Score=180.73 Aligned_cols=231 Identities=25% Similarity=0.262 Sum_probs=184.0
Q ss_pred ccCCCCcchhhhhccCchhhcccccccceEEEecCCcccC--ccc-cc-------cCCCCCEEEccCCCccC-c-cCC--
Q psy14728 34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKK--IEN-IH-------MLTTLKELELYDNQLTV-I-ENL-- 99 (319)
Q Consensus 34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~-~~-------~~~~L~~L~l~~~~~~~-~-~~~-- 99 (319)
.++.++++.+.. ..+ ..+... ++.|+++++.+.. ++. +. .+++|++|++++|+++. . ..+
T Consensus 44 ~L~~l~l~~n~l--~~p--~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADL--GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp ECTTHHHHCCTT--CCC--HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CceeEeeccccc--ccH--HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 455555665555 223 223222 8889999998864 332 22 68999999999999973 3 334
Q ss_pred CCCCCCcEEEccCCCCccccC-CCCC-----CCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcC----cccc--
Q psy14728 100 DTLINLEILDLSFNRIREIKG-LDHL-----ANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRI----IENL-- 165 (319)
Q Consensus 100 ~~l~~L~~L~l~~~~~~~l~~-~~~l-----~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~----~~~l-- 165 (319)
..+++|++|++++|.+..+|. +..+ ++|++|++++|.++.++ .+..+++|++|++++|++.. +..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 889999999999999987753 3333 89999999999998875 68899999999999998642 2333
Q ss_pred CCCCCccEEEcCCCCCcccc-----CCCCCCCCCEEECCCCCCCCC---cCCcCCCCCCeEeccCCcCcCccccCCCCCc
Q psy14728 166 DGLTNLEELYLGKNKISRID-----NLASLTKLNILSLQCNRLRTI---ENLEALTNLTQLYLSENGLTTIENLLSNEKL 237 (319)
Q Consensus 166 ~~~~~L~~L~l~~~~l~~~~-----~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L 237 (319)
..+++|++|++++|.+..++ .+..+++|++|++++|++... +.+..+++|++|++++|.++.+|.... ++|
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L 276 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKL 276 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCc
Confidence 78999999999999988542 235779999999999999874 346678999999999999998876333 899
Q ss_pred cEEEccCCCCCCccccccCCCCcEEEcCCCcCCC
Q psy14728 238 ETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 238 ~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 271 (319)
++|++++|++++++.+..+++|++|++++|++++
T Consensus 277 ~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 277 SVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred eEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 9999999999988779999999999999999986
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.1e-22 Score=169.58 Aligned_cols=209 Identities=26% Similarity=0.379 Sum_probs=133.8
Q ss_pred cCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCc
Q psy14728 79 MLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNK 158 (319)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 158 (319)
.+.++..+++.++.+........+++|+.|+++++.+..++.+..+++|+.|++++|.++.++.+..+++|++|++++|.
T Consensus 17 ~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC
T ss_pred hHHHHHHHHhcCcccccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc
Confidence 34455556666666666555667778888888888887777777788888888888887777667777777777777777
Q ss_pred CcCccc--cCCCCCccEEEcCCCCCccccC--CCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--
Q psy14728 159 IRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN-- 230 (319)
Q Consensus 159 ~~~~~~--l~~~~~L~~L~l~~~~l~~~~~--l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-- 230 (319)
+..+.. +..+++|++|++++|.+..++. +..+++|++|++++|+++.++. +..+++|++|++++|++++++.
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 664432 5666777777777776665532 5566666666666666665543 4566666666666666665543
Q ss_pred cCCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCc
Q psy14728 231 LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVA 295 (319)
Q Consensus 231 ~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 295 (319)
+..+++|++|++++|.++.++. +..+++|++|++++|.+.. .+++++.++++.|.+.
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHS 235 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTG
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCC
Confidence 4556666666666666655432 4556666666666665443 2445555555544443
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=3.1e-21 Score=163.75 Aligned_cols=215 Identities=25% Similarity=0.321 Sum_probs=133.3
Q ss_pred EEEecCCcccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCccc
Q psy14728 63 RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKIS 138 (319)
Q Consensus 63 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~ 138 (319)
..+..+..+..+|. .-.++|++|++++|.++.++ .+.++++|++|++++|.+..++ .+..+++|++|++++|.++
T Consensus 11 ~~~c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 11 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EEECTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEEecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 34455555655553 11256778888877776443 4677777777777777777665 3666777777777777766
Q ss_pred ccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCC--Cc-CCcCCC
Q psy14728 139 KIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRT--IE-NLEALT 213 (319)
Q Consensus 139 ~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~--~~-~~~~~~ 213 (319)
.++ .+..+++|++|++++|.+..... ..+..+++|++|++++|.+.. ++ .+..++
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~ 149 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLEN--------------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTT--------------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred ccChhhhcCCccccEEECCCCCccccCc--------------------hhcccCCCCCEEECcCCccceecCchhhccCC
Confidence 543 34555555555555554432221 124455555555555555544 22 355666
Q ss_pred CCCeEeccCCcCcCcc--ccCCCCCcc----EEEccCCCCCCcc-ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcE
Q psy14728 214 NLTQLYLSENGLTTIE--NLLSNEKLE----TLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT 286 (319)
Q Consensus 214 ~L~~L~l~~~~~~~~~--~~~~~~~L~----~L~l~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 286 (319)
+|++|++++|++++++ .+..++.|+ +|++++|.++.++ ......+|++|++++|+++..+ ...+..+++|+.
T Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 228 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP-DGIFDRLTSLQK 228 (276)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC-TTTTTTCCSCCE
T ss_pred CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC-HhHhcccccccE
Confidence 6777777777666543 233333333 7788888777653 3334457888888888888743 255677888888
Q ss_pred EEcCCCcCcCChh
Q psy14728 287 IYLDRNPVAQDPN 299 (319)
Q Consensus 287 L~l~~n~~~~~~~ 299 (319)
|++++|++.+++.
T Consensus 229 L~l~~N~~~c~c~ 241 (276)
T 2z62_A 229 IWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEccCCcccccCC
Confidence 8888888888764
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=3.6e-24 Score=194.90 Aligned_cols=174 Identities=21% Similarity=0.201 Sum_probs=96.8
Q ss_pred CCCccEEEccCCcCcC------ccccCCCCCccEEEcCCCCCccc------cC-CCCCCCCCEEECCCCCCCC-----Cc
Q psy14728 146 LKKLKVLELGDNKIRI------IENLDGLTNLEELYLGKNKISRI------DN-LASLTKLNILSLQCNRLRT-----IE 207 (319)
Q Consensus 146 ~~~L~~L~l~~~~~~~------~~~l~~~~~L~~L~l~~~~l~~~------~~-l~~~~~L~~L~l~~~~~~~-----~~ 207 (319)
.++|++|++++|.+.. ...+..+++|++|++++|.+.+. +. ...+++|++|++++|.++. ++
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 3455555555555543 12234456666666666655442 11 2245667777777766654 22
Q ss_pred -CCcCCCCCCeEeccCCcCcCcc-----c-c-CCCCCccEEEccCCCCCCc------cccccCCCCcEEEcCCCcCCCCc
Q psy14728 208 -NLEALTNLTQLYLSENGLTTIE-----N-L-LSNEKLETLDVAYNKISII------QNIAHLTELQEFWINDNQVSDWN 273 (319)
Q Consensus 208 -~~~~~~~L~~L~l~~~~~~~~~-----~-~-~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~n~~~~~~ 273 (319)
.+..+++|++|++++|.++..+ . + ...++|++|++++|.++.. ..+..+++|++|++++|.+++..
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 2445667777777777665321 1 1 2235677777777766542 23455677777777777776532
Q ss_pred ccc---ccc-CCCCCcEEEcCCCcCcCChh-hHHHHHHhCCceEEEecccC
Q psy14728 274 TVN---VLE-NNKQLQTIYLDRNPVAQDPN-YRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 274 ~~~---~~~-~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~L~~l~~~~C 319 (319)
... .+. ..++|+.|++++|.++.... .....+..+++|+.|++++|
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 211 111 15677777777777664211 11223456777888777764
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=7.6e-24 Score=192.78 Aligned_cols=305 Identities=21% Similarity=0.183 Sum_probs=187.2
Q ss_pred CceEEEEEeeecccc-------ccccccCCCCcchhhhhccC--chhhcccccccceEEEecCCcccCc--ccc-ccCC-
Q psy14728 15 DNLVTLNVEAVENTH-------GNQMSLDNPDEESEAETTES--KAEDEESKEVCIERLLLRWNLIKKI--ENI-HMLT- 81 (319)
Q Consensus 15 ~~l~~l~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l--~~~-~~~~- 81 (319)
.++..++++...... .....++.++++.+...... .....+..+++|++|++++|.+.+. ..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 346666776554331 12234566666666543321 1224456677777777777776642 222 2233
Q ss_pred ---CCCEEEccCCCccC------ccCCCCCCCCcEEEccCCCCcccc--C-----CCCCCCccEEEccCCccccc-----
Q psy14728 82 ---TLKELELYDNQLTV------IENLDTLINLEILDLSFNRIREIK--G-----LDHLANLEKLYLCSNKISKI----- 140 (319)
Q Consensus 82 ---~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~l~--~-----~~~l~~L~~L~l~~~~~~~~----- 140 (319)
+|++|++++|.++. +..+..+++|++|++++|.+.... . ....++|++|++++|.++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777763 234677777778888777765321 1 22345677788877776652
Q ss_pred -CCCCCCCCccEEEccCCcCcCc--cccC-----CCCCccEEEcCCCCCccc------cCCCCCCCCCEEECCCCCCCCC
Q psy14728 141 -ENVDHLKKLKVLELGDNKIRII--ENLD-----GLTNLEELYLGKNKISRI------DNLASLTKLNILSLQCNRLRTI 206 (319)
Q Consensus 141 -~~~~~~~~L~~L~l~~~~~~~~--~~l~-----~~~~L~~L~l~~~~l~~~------~~l~~~~~L~~L~l~~~~~~~~ 206 (319)
..+..+++|++|++++|.+... ..+. ..++|++|++++|.+... ..+..+++|++|++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 1345567788888887776421 1111 245788888888876652 2355677888888888876542
Q ss_pred ------cC-CcCCCCCCeEeccCCcCcC-----cc-ccCCCCCccEEEccCCCCCCc--ccc-----ccCCCCcEEEcCC
Q psy14728 207 ------EN-LEALTNLTQLYLSENGLTT-----IE-NLLSNEKLETLDVAYNKISII--QNI-----AHLTELQEFWIND 266 (319)
Q Consensus 207 ------~~-~~~~~~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~~~--~~l-----~~~~~L~~L~l~~ 266 (319)
+. ...+++|++|++++|.++. ++ .+..+++|++|++++|.++.. ..+ ...++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 11 2357788888888887775 33 255677888888888877532 111 1235888888888
Q ss_pred CcCCCCc---ccccccCCCCCcEEEcCCCcCcCChhh-HHHHH-HhCCceEEEecccC
Q psy14728 267 NQVSDWN---TVNVLENNKQLQTIYLDRNPVAQDPNY-RRKIK-LVCPWIVQIDATLA 319 (319)
Q Consensus 267 n~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~-~~~~~L~~l~~~~C 319 (319)
|.+++.. .+..+..+++|+.|++++|+++..... ....+ ..+++|+.|++++|
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 8887642 224456678888888888877654321 11111 12678888888876
No 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.87 E-value=2.1e-22 Score=188.13 Aligned_cols=173 Identities=36% Similarity=0.440 Sum_probs=99.4
Q ss_pred ccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccC
Q psy14728 55 ESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCS 134 (319)
Q Consensus 55 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~ 134 (319)
+..+++|+.|+++++.+..++.+..+++|+.|+|++|+++.++.+..+++|+.|+|++|.+..++.+..+++|+.|++++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence 34455566666666666655555566666666666666555444555666666666666655555555556666666666
Q ss_pred CcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCC
Q psy14728 135 NKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTN 214 (319)
Q Consensus 135 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 214 (319)
|.+..++.+..+++|+.|++++|.+..+..+..+++|+.|++++|.+.++..+..+++|+.|++++|.+..++.+..+++
T Consensus 119 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~ 198 (605)
T 1m9s_A 119 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKN 198 (605)
T ss_dssp SCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTT
T ss_pred CCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCC
Confidence 65555555555555555555555555555555555555555555555554335555555555555555555555555555
Q ss_pred CCeEeccCCcCcC
Q psy14728 215 LTQLYLSENGLTT 227 (319)
Q Consensus 215 L~~L~l~~~~~~~ 227 (319)
|+.|++++|.+..
T Consensus 199 L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 199 LDVLELFSQECLN 211 (605)
T ss_dssp CSEEECCSEEEEC
T ss_pred CCEEEccCCcCcC
Confidence 5555555555544
No 79
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.87 E-value=9.3e-23 Score=190.52 Aligned_cols=193 Identities=32% Similarity=0.419 Sum_probs=160.8
Q ss_pred cccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcc
Q psy14728 58 EVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKI 137 (319)
Q Consensus 58 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~ 137 (319)
+.++..+.+....+.++..+..+++|+.|++++|.+..++.+..+++|+.|+|++|.+..++.+..+++|+.|++++|.+
T Consensus 20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCC
Confidence 44555666777778887778889999999999999998888999999999999999999888788899999999999999
Q ss_pred cccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCe
Q psy14728 138 SKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQ 217 (319)
Q Consensus 138 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~ 217 (319)
+.++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+.+++.+..+++|+.|++++|.+..++.+..+++|+.
T Consensus 100 ~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~ 179 (605)
T 1m9s_A 100 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 179 (605)
T ss_dssp CCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCE
T ss_pred CCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCE
Confidence 88888888889999999888888777788888888888888888877777788888888888888877655777788888
Q ss_pred EeccCCcCcCccccCCCCCccEEEccCCCCCCc
Q psy14728 218 LYLSENGLTTIENLLSNEKLETLDVAYNKISII 250 (319)
Q Consensus 218 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 250 (319)
|++++|.+++++.+..+++|+.|++++|.+...
T Consensus 180 L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 180 LYLSKNHISDLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred EECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence 888888888777777778888888888776643
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.3e-20 Score=161.04 Aligned_cols=194 Identities=26% Similarity=0.289 Sum_probs=166.0
Q ss_pred cccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccCCCCCCCccEEE
Q psy14728 54 EESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKGLDHLANLEKLY 131 (319)
Q Consensus 54 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~ 131 (319)
.++.+++++.++++++.++.+|. .-.++++.|++++|.++.+ ..+..+++|++|++++|.++.++....+++|+.|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred cccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 46778999999999999998874 1237999999999999854 45899999999999999999998778899999999
Q ss_pred ccCCcccccC-CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCCC
Q psy14728 132 LCSNKISKIE-NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTI 206 (319)
Q Consensus 132 l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~~ 206 (319)
+++|.++.++ .+..+++|++|++++|.+..++ .+.++++|++|++++|.+..++ .+..+++|+.|++++|+++.+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 9999999887 5778999999999999987653 4788999999999999988873 367888999999999999887
Q ss_pred cC--CcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCC
Q psy14728 207 EN--LEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKIS 248 (319)
Q Consensus 207 ~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 248 (319)
+. +..+++|+.|++++|+++.+|. +...+.|+.+++++|.+.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 64 5778999999999999988864 667778999999988764
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=8.5e-21 Score=161.07 Aligned_cols=194 Identities=29% Similarity=0.426 Sum_probs=137.0
Q ss_pred ccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEc
Q psy14728 59 VCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYL 132 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l 132 (319)
+++++|+++++.+++++ .+..+++|++|++++|+++.++ .+..+++|++|++++|.+..++ .+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47999999999999875 5889999999999999998654 4899999999999999999876 4888999999999
Q ss_pred cCCcccccC--CCCCCCCccEEEccCCcCcC---ccccCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCC
Q psy14728 133 CSNKISKIE--NVDHLKKLKVLELGDNKIRI---IENLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRT 205 (319)
Q Consensus 133 ~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~ 205 (319)
++|.++.++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+.+++ .+..+++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----------- 176 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------- 176 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-----------
Confidence 999998875 47788899999998888764 335666777777777777665542 222222222
Q ss_pred CcCCcCCCCCC-eEeccCCcCcCccc-cCCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCcCCC
Q psy14728 206 IENLEALTNLT-QLYLSENGLTTIEN-LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 206 ~~~~~~~~~L~-~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~~~ 271 (319)
.+. .+++++|.++.++. .....+|++|++++|.++.++. +..+++|++|++++|++..
T Consensus 177 --------~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 177 --------LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp --------TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred --------ccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 111 45555555554432 2233355566666665554432 4556666666666665554
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=6.1e-20 Score=155.32 Aligned_cols=188 Identities=28% Similarity=0.405 Sum_probs=129.5
Q ss_pred ccceEEEecCCcccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCccccC--CCCCCCccEEEccC
Q psy14728 59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCS 134 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~ 134 (319)
...+.++++++.++.+|. .-.+++++|++++|+++.++ .+.++++|++|++++|.+..++. +..+++|++|++++
T Consensus 16 ~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 357899999999998874 12378999999999998664 48899999999999999998874 67899999999999
Q ss_pred CcccccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccccC--CCCCCCCCEEECCCCCCCCCcC
Q psy14728 135 NKISKIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN 208 (319)
Q Consensus 135 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~--l~~~~~L~~L~l~~~~~~~~~~ 208 (319)
|.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|+++.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 9988765 4567777777777777765443 25566666666666666655432 4555556666666555555432
Q ss_pred --CcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCC
Q psy14728 209 --LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKI 247 (319)
Q Consensus 209 --~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~ 247 (319)
+..+++|++|++++|.++.++. +..+++|+.|++++|.+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 4445555555555555554432 34445555555555543
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=165.90 Aligned_cols=217 Identities=18% Similarity=0.131 Sum_probs=113.1
Q ss_pred cceEEEecCCcccC-----ccccccCCCCCEEEccCCCccCc--cCC--CCCCCCcEEEccCCCCccc------cCCCCC
Q psy14728 60 CIERLLLRWNLIKK-----IENIHMLTTLKELELYDNQLTVI--ENL--DTLINLEILDLSFNRIREI------KGLDHL 124 (319)
Q Consensus 60 ~L~~L~l~~~~~~~-----l~~~~~~~~L~~L~l~~~~~~~~--~~~--~~l~~L~~L~l~~~~~~~l------~~~~~l 124 (319)
.++.+.+.++.+.. +.....+++|++|++++|.++.. ..+ ..+++|++|++++|.+... ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45666666655542 11223345577777777766532 223 5666777777777666541 112345
Q ss_pred CCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCC
Q psy14728 125 ANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202 (319)
Q Consensus 125 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~ 202 (319)
++|++|++++|.++..+ .+..+++|++|++++|++..... +.....+..+++|++|++++|+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG----------------LMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH----------------HHTTSCTTSSCCCCSCBCCSSC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh----------------hhHHHhhhcCCCCCEEECCCCC
Confidence 56666666666655443 34445555555555544321000 0000112344555555555555
Q ss_pred CCCCcC-----CcCCCCCCeEeccCCcCcCc-c-ccCCC---CCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q psy14728 203 LRTIEN-----LEALTNLTQLYLSENGLTTI-E-NLLSN---EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDW 272 (319)
Q Consensus 203 ~~~~~~-----~~~~~~L~~L~l~~~~~~~~-~-~~~~~---~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 272 (319)
++.++. ++.+++|++|++++|++++. | .+..+ ++|++|++++|.++.++... .++|++|++++|+++++
T Consensus 209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRA 287 (310)
T ss_dssp CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSC
T ss_pred CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCC
Confidence 544322 24455666666666665554 2 23333 46666666666666543211 25677777777776664
Q ss_pred cccccccCCCCCcEEEcCCCcCcC
Q psy14728 273 NTVNVLENNKQLQTIYLDRNPVAQ 296 (319)
Q Consensus 273 ~~~~~~~~~~~L~~L~l~~n~~~~ 296 (319)
+. +..+++|+.|++++|+++.
T Consensus 288 ~~---~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 PQ---PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC---TTSCCCCSCEECSSTTTSC
T ss_pred ch---hhhCCCccEEECcCCCCCC
Confidence 22 4556677777777776654
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=7.1e-23 Score=182.27 Aligned_cols=242 Identities=21% Similarity=0.208 Sum_probs=144.5
Q ss_pred hcccccccceEEEecCCcccCc-----c-ccccCCCCCEEEccCCCccCcc-----C-------CCCCCCCcEEEccCCC
Q psy14728 53 DEESKEVCIERLLLRWNLIKKI-----E-NIHMLTTLKELELYDNQLTVIE-----N-------LDTLINLEILDLSFNR 114 (319)
Q Consensus 53 ~~~~~~~~L~~L~l~~~~~~~l-----~-~~~~~~~L~~L~l~~~~~~~~~-----~-------~~~l~~L~~L~l~~~~ 114 (319)
..+..+++|+.|++++|.+... . .+..+++|++|++++|.+..+. . +..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 4455666777777777766642 1 2556667777777665443211 1 2455666666666665
Q ss_pred Ccc-----cc-CCCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCccccCCC---------CCccEEEcC
Q psy14728 115 IRE-----IK-GLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIENLDGL---------TNLEELYLG 177 (319)
Q Consensus 115 ~~~-----l~-~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~---------~~L~~L~l~ 177 (319)
+.. ++ .+..+++|++|++++|.++... .+. ..+..+ ++|++|+++
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~------------------~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA------------------RALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH------------------HHHHHHHHHHHHHTCCCCCEEECC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH------------------HHHHHHhhhhhcccCCCCcEEECC
Confidence 543 22 2344555555555555543210 000 011222 566666666
Q ss_pred CCCCcc--cc----CCCCCCCCCEEECCCCCCCC------Cc-CCcCCCCCCeEeccCCcCc-----Ccc-ccCCCCCcc
Q psy14728 178 KNKISR--ID----NLASLTKLNILSLQCNRLRT------IE-NLEALTNLTQLYLSENGLT-----TIE-NLLSNEKLE 238 (319)
Q Consensus 178 ~~~l~~--~~----~l~~~~~L~~L~l~~~~~~~------~~-~~~~~~~L~~L~l~~~~~~-----~~~-~~~~~~~L~ 238 (319)
+|.+.. ++ .+..+++|++|++++|++.. ++ .+..+++|+.|++++|.++ .++ .+..+++|+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 666542 12 34456677777777777662 23 5667778888888888774 233 367778888
Q ss_pred EEEccCCCCCCc------ccc--ccCCCCcEEEcCCCcCCCC---cccccc-cCCCCCcEEEcCCCcCcCChhhHHHHHH
Q psy14728 239 TLDVAYNKISII------QNI--AHLTELQEFWINDNQVSDW---NTVNVL-ENNKQLQTIYLDRNPVAQDPNYRRKIKL 306 (319)
Q Consensus 239 ~L~l~~~~~~~~------~~l--~~~~~L~~L~l~~n~~~~~---~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 306 (319)
+|++++|.++.. ..+ ..+++|++|++++|.+++. ..+..+ .++++|+.|++++|+++....+...+..
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 327 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence 888888887643 234 3378888888888888762 122333 5578888888888888877764455555
Q ss_pred hCCceE
Q psy14728 307 VCPWIV 312 (319)
Q Consensus 307 ~~~~L~ 312 (319)
.+|.++
T Consensus 328 ~l~~~~ 333 (386)
T 2ca6_A 328 VFSTRG 333 (386)
T ss_dssp HHHHHT
T ss_pred HhhhcC
Confidence 555543
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=9.7e-21 Score=157.29 Aligned_cols=197 Identities=18% Similarity=0.341 Sum_probs=101.6
Q ss_pred ccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCC-Ccccc--CCCCCCCccEEEccC-CcccccC--C
Q psy14728 71 IKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNR-IREIK--GLDHLANLEKLYLCS-NKISKIE--N 142 (319)
Q Consensus 71 ~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~l~--~~~~l~~L~~L~l~~-~~~~~~~--~ 142 (319)
++.+|. -.++|++|++++|+++.++ .+..+++|++|++++|. ++.++ .+..+++|++|++++ |.++.++ .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 444444 2235666666666665432 25566666666666664 55554 345566666666665 5555543 2
Q ss_pred CCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCC-CCCCCcC--CcCCCCCC-eE
Q psy14728 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCN-RLRTIEN--LEALTNLT-QL 218 (319)
Q Consensus 143 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~-~~~~~~~--~~~~~~L~-~L 218 (319)
+..+++|++|++++|.+..++.+..+++|+ .|++|++++| +++.++. +..+++|+ +|
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~-------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTD-------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCCCTTCCBCC-------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred hCCCCCCCEEeCCCCCCccccccccccccc-------------------cccEEECCCCcchhhcCcccccchhcceeEE
Confidence 344445555555544443333333333333 0014444444 3333321 44455555 55
Q ss_pred eccCCcCcCccc-cCCCCCccEEEccCCC-CCCcc--ccccC-CCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCC
Q psy14728 219 YLSENGLTTIEN-LLSNEKLETLDVAYNK-ISIIQ--NIAHL-TELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292 (319)
Q Consensus 219 ~l~~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~--~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 292 (319)
++++|+++.+|. ....++|++|++++|+ ++.++ .+..+ ++|++|++++|+++..+. ..+++|+.|+++++
T Consensus 162 ~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 162 KLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS----KGLEHLKELIARNT 236 (239)
T ss_dssp ECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC----TTCTTCSEEECTTC
T ss_pred EcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh----hHhccCceeeccCc
Confidence 555555554442 1222556666666663 55442 35555 667777777776665432 14566666666665
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.84 E-value=4.8e-21 Score=161.36 Aligned_cols=172 Identities=23% Similarity=0.303 Sum_probs=136.7
Q ss_pred ccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCc
Q psy14728 57 KEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNK 136 (319)
Q Consensus 57 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~ 136 (319)
.+.++..++++++.+++++.+..+++|++|++++|.++.++.+..+++|++|++++|.+..++.+..+++|+.|++++|.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCc
Confidence 46667777888888888877888888999999888888777788888888888888888887778888888888888888
Q ss_pred ccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCC
Q psy14728 137 ISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLT 216 (319)
Q Consensus 137 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~ 216 (319)
++.++.+.. ++|++|++++|.+..++.+..+++|+.|++++|.+++++.+..+++|+.|++++|+++.++.+..+++|+
T Consensus 97 l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~ 175 (263)
T 1xeu_A 97 LKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVN 175 (263)
T ss_dssp CSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCC
T ss_pred cCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCC
Confidence 888776655 7888888888877777677777888888888887777776777777788888777777766677777777
Q ss_pred eEeccCCcCcCcc
Q psy14728 217 QLYLSENGLTTIE 229 (319)
Q Consensus 217 ~L~l~~~~~~~~~ 229 (319)
.|++++|.++..|
T Consensus 176 ~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 176 WIDLTGQKCVNEP 188 (263)
T ss_dssp EEEEEEEEEECCC
T ss_pred EEeCCCCcccCCc
Confidence 7777777766543
No 87
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.84 E-value=4.4e-21 Score=161.61 Aligned_cols=171 Identities=25% Similarity=0.328 Sum_probs=145.2
Q ss_pred CCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCC
Q psy14728 101 TLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180 (319)
Q Consensus 101 ~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~ 180 (319)
.+.++..++++++.++.++.+..+++|+.|++++|.++.++.+..+++|++|++++|.+..++.+..+++|++|++++|.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCc
Confidence 45667778888888888887788899999999999988888888889999999999988877668888899999999998
Q ss_pred CccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCc
Q psy14728 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQ 260 (319)
Q Consensus 181 l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~ 260 (319)
+.+++.+.. ++|++|++++|+++.++.+..+++|+.|++++|++++++.+..+++|+.|++++|.++.++.+..+++|+
T Consensus 97 l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~ 175 (263)
T 1xeu_A 97 LKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVN 175 (263)
T ss_dssp CSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCC
T ss_pred cCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCC
Confidence 888766666 8888899998888888778888888889988888888888888888888888888888877788888888
Q ss_pred EEEcCCCcCCCC
Q psy14728 261 EFWINDNQVSDW 272 (319)
Q Consensus 261 ~L~l~~n~~~~~ 272 (319)
+|++++|+++..
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 888888888764
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=4.4e-20 Score=153.33 Aligned_cols=184 Identities=20% Similarity=0.261 Sum_probs=127.0
Q ss_pred ccceEEEecCCcccCccc--cccCCCCCEEEccCCC-ccCcc--CCCCCCCCcEEEccC-CCCcccc--CCCCCCCccEE
Q psy14728 59 VCIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQ-LTVIE--NLDTLINLEILDLSF-NRIREIK--GLDHLANLEKL 130 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~-~~~~~--~~~~l~~L~~L~l~~-~~~~~l~--~~~~l~~L~~L 130 (319)
++++.|+++++.++.++. +..+++|++|++++|+ ++.++ .+.++++|++|++++ |.++.++ .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999998864 8899999999999997 87654 488999999999998 9999887 46789999999
Q ss_pred EccCCcccccCCCCCCCCcc---EEEccCC-cCcCcc--ccCCCCCcc-EEEcCCCCCccccC-CCCCCCCCEEECCCCC
Q psy14728 131 YLCSNKISKIENVDHLKKLK---VLELGDN-KIRIIE--NLDGLTNLE-ELYLGKNKISRIDN-LASLTKLNILSLQCNR 202 (319)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~--~l~~~~~L~-~L~l~~~~l~~~~~-l~~~~~L~~L~l~~~~ 202 (319)
++++|.++.++.+..+++|+ +|++++| .+..++ .+.++++|+ .|++++|.+..++. ....++|+.|++++|+
T Consensus 111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred eCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence 99999999988888888887 8888888 665443 256666777 77777666655421 1112445555555552
Q ss_pred -CCCCc--CCcCC-CCCCeEeccCCcCcCccccCCCCCccEEEcc
Q psy14728 203 -LRTIE--NLEAL-TNLTQLYLSENGLTTIENLLSNEKLETLDVA 243 (319)
Q Consensus 203 -~~~~~--~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 243 (319)
++.++ .+..+ ++|+.|++++|+++.+|.. .+++|+.|+++
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred CcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence 44432 13334 4444444444444443322 33344444433
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=5.4e-20 Score=158.77 Aligned_cols=195 Identities=16% Similarity=0.105 Sum_probs=132.9
Q ss_pred ccccceEEEecCCcccCc-c-cc--ccCCCCCEEEccCCCccCc------cCCCCCCCCcEEEccCCCCcccc--CCCCC
Q psy14728 57 KEVCIERLLLRWNLIKKI-E-NI--HMLTTLKELELYDNQLTVI------ENLDTLINLEILDLSFNRIREIK--GLDHL 124 (319)
Q Consensus 57 ~~~~L~~L~l~~~~~~~l-~-~~--~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~l~--~~~~l 124 (319)
.+++|++|++++|.+.+. + .+ ..+++|++|++++|.++.. ..+..+++|++|++++|.+..++ .+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 457799999999999864 3 34 8899999999999998752 12457999999999999998775 47889
Q ss_pred CCccEEEccCCcccc---cC---CCCCCCCccEEEccCCcCcCccc-----cCCCCCccEEEcCCCCCccc--cCCCCCC
Q psy14728 125 ANLEKLYLCSNKISK---IE---NVDHLKKLKVLELGDNKIRIIEN-----LDGLTNLEELYLGKNKISRI--DNLASLT 191 (319)
Q Consensus 125 ~~L~~L~l~~~~~~~---~~---~~~~~~~L~~L~l~~~~~~~~~~-----l~~~~~L~~L~l~~~~l~~~--~~l~~~~ 191 (319)
++|++|++++|++.+ ++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+.+. +.+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~- 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC- 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC-
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc-
Confidence 999999999999764 21 23456666666666666543322 23344555555555544432 111111
Q ss_pred CCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCC
Q psy14728 192 KLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 192 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 271 (319)
..+++|++|++++|+++.+|... +++|++|++++|++++++.+..+++|++|++++|++++
T Consensus 248 ------------------~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 248 ------------------MWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ------------------CCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred ------------------cCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 11256666666666666655421 26777777777777776656677778888888887765
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=1.4e-21 Score=174.00 Aligned_cols=242 Identities=21% Similarity=0.223 Sum_probs=146.6
Q ss_pred ccccCCCCcchhhhhccCc--hhhcccccccceEEEecCCcccCc----c-c-------cccCCCCCEEEccCCCccC--
Q psy14728 32 QMSLDNPDEESEAETTESK--AEDEESKEVCIERLLLRWNLIKKI----E-N-------IHMLTTLKELELYDNQLTV-- 95 (319)
Q Consensus 32 ~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l----~-~-------~~~~~~L~~L~l~~~~~~~-- 95 (319)
...++.++++.+....... ....+..+++|++|+++++.+..+ | . +..+++|++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3457777888776655433 224577899999999999765533 2 1 3688999999999999875
Q ss_pred ---c-cCCCCCCCCcEEEccCCCCcccc--C----CCCC---------CCccEEEccCCcccc--cCCCCCCCCccEEEc
Q psy14728 96 ---I-ENLDTLINLEILDLSFNRIREIK--G----LDHL---------ANLEKLYLCSNKISK--IENVDHLKKLKVLEL 154 (319)
Q Consensus 96 ---~-~~~~~l~~L~~L~l~~~~~~~l~--~----~~~l---------~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l 154 (319)
+ ..+..+++|++|++++|.+.... . +..+ ++|++|++++|.++. ++.+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l----------- 179 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW----------- 179 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH-----------
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH-----------
Confidence 2 34788999999999999987432 1 2223 677777777777652 2210
Q ss_pred cCCcCcCccccCCCCCccEEEcCCCCCcc------cc-CCCCCCCCCEEECCCCCCC-----CCc-CCcCCCCCCeEecc
Q psy14728 155 GDNKIRIIENLDGLTNLEELYLGKNKISR------ID-NLASLTKLNILSLQCNRLR-----TIE-NLEALTNLTQLYLS 221 (319)
Q Consensus 155 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~------~~-~l~~~~~L~~L~l~~~~~~-----~~~-~~~~~~~L~~L~l~ 221 (319)
...+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.++ .++ .+..+++|++|+++
T Consensus 180 -------~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 180 -------AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp -------HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred -------HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 0112234444455554444441 12 4445555555666555553 122 24556666777777
Q ss_pred CCcCcCc-----c-cc--CCCCCccEEEccCCCCCC-----cc-cc-ccCCCCcEEEcCCCcCCCCcc--cccccCCCCC
Q psy14728 222 ENGLTTI-----E-NL--LSNEKLETLDVAYNKISI-----IQ-NI-AHLTELQEFWINDNQVSDWNT--VNVLENNKQL 284 (319)
Q Consensus 222 ~~~~~~~-----~-~~--~~~~~L~~L~l~~~~~~~-----~~-~l-~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L 284 (319)
+|.++.. + .+ ..+++|++|++++|.++. ++ .+ .++++|++|++++|.+++... ......++++
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~ 332 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 332 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhc
Confidence 7766543 2 23 336777777777777765 32 23 456778888888887776441 2222334444
Q ss_pred cEEEcCC
Q psy14728 285 QTIYLDR 291 (319)
Q Consensus 285 ~~L~l~~ 291 (319)
+.+.+..
T Consensus 333 ~~~~l~~ 339 (386)
T 2ca6_A 333 GRGELDE 339 (386)
T ss_dssp TCCEECC
T ss_pred Ccchhhh
Confidence 4445544
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=3.9e-18 Score=142.57 Aligned_cols=171 Identities=26% Similarity=0.344 Sum_probs=97.9
Q ss_pred CCcEEEccCCCCccccC-CCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCC
Q psy14728 104 NLEILDLSFNRIREIKG-LDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180 (319)
Q Consensus 104 ~L~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~ 180 (319)
..++++++++.+..+|. +. ++++.|++++|.++.++ .+..+++|++|++++|.+.....
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------- 76 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA---------------- 76 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------------
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH----------------
Confidence 45566666666666653 22 45666666666665543 34444555555555444432211
Q ss_pred CccccCCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCcc--ccc
Q psy14728 181 ISRIDNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQ--NIA 254 (319)
Q Consensus 181 l~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~l~ 254 (319)
..+..+++|++|++++|+++.++ .+..+++|++|++++|+++.++. +..+++|++|++++|.++.++ .+.
T Consensus 77 ----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 152 (251)
T 3m19_A 77 ----GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152 (251)
T ss_dssp ----TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ----hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC
Confidence 12445555555555555555443 24556666666666666665543 455666666666666666543 356
Q ss_pred cCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCC
Q psy14728 255 HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD 297 (319)
Q Consensus 255 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 297 (319)
.+++|++|++++|+++..+ ...+..+++|+.|++++|++.+.
T Consensus 153 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCceeCC
Confidence 6667777777777766532 24556667777777777777665
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.8e-18 Score=160.00 Aligned_cols=177 Identities=23% Similarity=0.340 Sum_probs=141.1
Q ss_pred CCCCEEEccCCCccCccC-CCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcC
Q psy14728 81 TTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKI 159 (319)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 159 (319)
.+|+.|++++|.++.++. + +++|++|++++|.++.+| ..+++|+.|++++|.+++++.+.. +|++|++++|.+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCC
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcC
Confidence 389999999999887654 4 478999999999999888 667899999999999988876433 899999999888
Q ss_pred cCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCc--
Q psy14728 160 RIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKL-- 237 (319)
Q Consensus 160 ~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L-- 237 (319)
..++. .+++|+.|++++|.+..++. .+++|+.|++++|+++.+|.+. ++|+.|++++|.++.+|.+. .+|
T Consensus 133 ~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~--~~L~~ 204 (571)
T 3cvr_A 133 TMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVP--VRNHH 204 (571)
T ss_dssp SCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC-------
T ss_pred CCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHH--Hhhhc
Confidence 77665 67888889988888887765 5678888888888888877643 88888888888888777633 266
Q ss_pred -----cEEEccCCCCCCccc-cccCCCCcEEEcCCCcCCC
Q psy14728 238 -----ETLDVAYNKISIIQN-IAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 238 -----~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~ 271 (319)
+.|++++|.++.++. +..+++|++|++++|++++
T Consensus 205 ~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ---CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred ccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 888888888887653 6678888888888888876
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.7e-18 Score=160.25 Aligned_cols=176 Identities=21% Similarity=0.274 Sum_probs=152.4
Q ss_pred cceEEEecCCcccCccc-cccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCccc
Q psy14728 60 CIERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS 138 (319)
Q Consensus 60 ~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~ 138 (319)
+++.|+++++.++++|. + +++|++|++++|.++.++ ..+++|++|++++|.++.+|.+.. +|+.|++++|.++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCC
Confidence 89999999999998875 4 489999999999999777 678999999999999999887443 9999999999999
Q ss_pred ccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCC---
Q psy14728 139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNL--- 215 (319)
Q Consensus 139 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L--- 215 (319)
+++. .+++|+.|++++|.+..++. .+++|++|++++|.+..++.+. ++|+.|++++|+++.+|.+.. +|
T Consensus 134 ~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~ 205 (571)
T 3cvr_A 134 MLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV--RNHHS 205 (571)
T ss_dssp CCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC--------
T ss_pred CCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH--hhhcc
Confidence 9887 78999999999999987665 5789999999999998887644 899999999999998876433 77
Q ss_pred ----CeEeccCCcCcCccc-cCCCCCccEEEccCCCCCC
Q psy14728 216 ----TQLYLSENGLTTIEN-LLSNEKLETLDVAYNKISI 249 (319)
Q Consensus 216 ----~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 249 (319)
+.|++++|.++.+|. +..+++|+.|++++|.+++
T Consensus 206 ~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 206 EETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp --CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred cccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 999999999999885 7779999999999999975
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=2.1e-19 Score=144.68 Aligned_cols=147 Identities=20% Similarity=0.254 Sum_probs=85.3
Q ss_pred cccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCcc--ccCCCCCCCccEEEcc
Q psy14728 56 SKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIRE--IKGLDHLANLEKLYLC 133 (319)
Q Consensus 56 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~l~~L~~L~l~ 133 (319)
..+++|+.|+++++.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.+.. .+.+..+++|++|+++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 55667777777777777666666777777777777766666666667777777777776664 3356666666666666
Q ss_pred CCcccc--cCCCCCCCCccEEEccCCc-CcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCC
Q psy14728 134 SNKISK--IENVDHLKKLKVLELGDNK-IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202 (319)
Q Consensus 134 ~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~ 202 (319)
+|.++. ...+..+++|++|++++|. +..++.+..+++|+.|++++|.+.+++.+..+++|++|++++|+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence 666654 2244455555555555554 44444444444444444444444444344444444444444443
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=3.4e-21 Score=180.65 Aligned_cols=301 Identities=16% Similarity=0.138 Sum_probs=173.5
Q ss_pred ceEEEEEeeeccc--------cccccccCCCCcchhhhhccCc--hhhcccccccceEEEecCCcccCc-----cc-ccc
Q psy14728 16 NLVTLNVEAVENT--------HGNQMSLDNPDEESEAETTESK--AEDEESKEVCIERLLLRWNLIKKI-----EN-IHM 79 (319)
Q Consensus 16 ~l~~l~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l-----~~-~~~ 79 (319)
+++.++++.+... ...+..|+.++++.+...+... .......+++|+.|+++++.++++ +. +..
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 4777777665421 1134567777777776544322 123455677888888887777632 22 456
Q ss_pred CCCCCEEEccCCCccCccC-CCCCCCCcEEEc---------------------------cCCCCccccC-CCCCCCccEE
Q psy14728 80 LTTLKELELYDNQLTVIEN-LDTLINLEILDL---------------------------SFNRIREIKG-LDHLANLEKL 130 (319)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l---------------------------~~~~~~~l~~-~~~l~~L~~L 130 (319)
+++|++|++++|.+..++. +..+++|++|++ +++....++. +..+++|++|
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 7778888887776543322 344444444444 4433333332 3446677777
Q ss_pred EccCCcccccC---CCCCCCCccEEEccCCcCc--Cccc-cCCCCCccEEEcCC-----------CCCccc--cC-CCCC
Q psy14728 131 YLCSNKISKIE---NVDHLKKLKVLELGDNKIR--IIEN-LDGLTNLEELYLGK-----------NKISRI--DN-LASL 190 (319)
Q Consensus 131 ~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~--~~~~-l~~~~~L~~L~l~~-----------~~l~~~--~~-l~~~ 190 (319)
++++|.++... .+..+++|++|++. +.+. .+.. ...+++|++|+++. +.++.. .. ...+
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 77776654321 24566777777766 2221 1111 23456777777772 233321 11 3346
Q ss_pred CCCCEEECCCCCCCC--CcCCc-CCCCCCeEecc----CCcCcCcc------c-cCCCCCccEEEccCCC--CCC--ccc
Q psy14728 191 TKLNILSLQCNRLRT--IENLE-ALTNLTQLYLS----ENGLTTIE------N-LLSNEKLETLDVAYNK--ISI--IQN 252 (319)
Q Consensus 191 ~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~----~~~~~~~~------~-~~~~~~L~~L~l~~~~--~~~--~~~ 252 (319)
++|++|+++.+.++. +..+. .+++|++|+++ .+.+++.| . +..+++|++|++++|. ++. +..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 777777776666654 22233 36777777775 34555431 1 4457778888886543 332 222
Q ss_pred c-ccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 253 I-AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 253 l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
+ ..+++|++|++++|++++......+.++++|+.|++++|+++.. .. ......+++|+.|++++|
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~-~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER-AI-AAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH-HH-HHHHHHCSSCCEEEEESC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH-HH-HHHHHhcCccCeeECcCC
Confidence 3 24777888888888877644445567778888888888886432 11 234457888888888776
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=4.4e-19 Score=142.84 Aligned_cols=149 Identities=20% Similarity=0.335 Sum_probs=101.6
Q ss_pred cccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccc--cCCCCCCCCccEEEc
Q psy14728 77 IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISK--IENVDHLKKLKVLEL 154 (319)
Q Consensus 77 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l 154 (319)
...+++|++|++++|.++.++.+..+++|++|++++|.+..++.+..+++|++|++++|.++. ...+..+++|++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 367888999999999888777788888999999998888777777888888888888888875 446667777777777
Q ss_pred cCCcCcC--ccccCCCCCccEEEcCCCC-CccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcC
Q psy14728 155 GDNKIRI--IENLDGLTNLEELYLGKNK-ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGL 225 (319)
Q Consensus 155 ~~~~~~~--~~~l~~~~~L~~L~l~~~~-l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 225 (319)
++|.+.. +..+..+++|++|++++|. +..++.+..+++|++|++++|+++.++.+..+++|++|++++|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCccc
Confidence 7776653 3445566666666666665 555544555555555555555555544444455555555555444
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=1.8e-17 Score=138.50 Aligned_cols=166 Identities=30% Similarity=0.432 Sum_probs=125.7
Q ss_pred CCCCEEEccCCCccCccC-CCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCcccccC--CCCCCCCccEEEcc
Q psy14728 81 TTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELG 155 (319)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~ 155 (319)
...++++++++.++.++. +. ++|+.|++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 567899999999987654 33 68999999999999876 4888999999999999999875 47889999999999
Q ss_pred CCcCcCcc--ccCCCCCccEEEcCCCCCccccC--CCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCcc
Q psy14728 156 DNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE 229 (319)
Q Consensus 156 ~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~--l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~ 229 (319)
+|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|+++.++. +..+++|++|++++|++++++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99887543 45677888888888887776632 5667777777777777766543 566677777777777766654
Q ss_pred c--cCCCCCccEEEccCCCCC
Q psy14728 230 N--LLSNEKLETLDVAYNKIS 248 (319)
Q Consensus 230 ~--~~~~~~L~~L~l~~~~~~ 248 (319)
. +..+++|+.|++++|.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 2 556666666666666654
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=3.1e-19 Score=155.64 Aligned_cols=233 Identities=17% Similarity=0.181 Sum_probs=160.8
Q ss_pred cceEEEecCCcccCccccccC--CCCCEEEccCCCccCc-cCCCCCCCCcEEEccCCCCcc--cc-CCCCCCCccEEEcc
Q psy14728 60 CIERLLLRWNLIKKIENIHML--TTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIRE--IK-GLDHLANLEKLYLC 133 (319)
Q Consensus 60 ~L~~L~l~~~~~~~l~~~~~~--~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--l~-~~~~l~~L~~L~l~ 133 (319)
.++.++++++.+.. ..+..+ ++++.|+++++.+... +.+..+++|++|++++|.+.. ++ .+..+++|++|+++
T Consensus 48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred hheeeccccccCCH-HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 47888998887762 234555 8899999999888743 446778999999999998764 44 46778899999999
Q ss_pred CCccccc--CCCCCCCCccEEEccCC-cCcC--cc-ccCCCCCccEEEcCCC-CCccc---cCCCCCC-CCCEEECCCCC
Q psy14728 134 SNKISKI--ENVDHLKKLKVLELGDN-KIRI--IE-NLDGLTNLEELYLGKN-KISRI---DNLASLT-KLNILSLQCNR 202 (319)
Q Consensus 134 ~~~~~~~--~~~~~~~~L~~L~l~~~-~~~~--~~-~l~~~~~L~~L~l~~~-~l~~~---~~l~~~~-~L~~L~l~~~~ 202 (319)
+|.++.. ..+..+++|++|++++| .+.. ++ .+..+++|++|++++| .+++. ..+..++ +|++|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 9887642 35667888899998888 4542 22 3566788888888888 66642 3356677 88888888884
Q ss_pred --CC--CCc-CCcCCCCCCeEeccCCc-CcC--ccccCCCCCccEEEccCCC-CCC--ccccccCCCCcEEEcCCCcCCC
Q psy14728 203 --LR--TIE-NLEALTNLTQLYLSENG-LTT--IENLLSNEKLETLDVAYNK-ISI--IQNIAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 203 --~~--~~~-~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~~L~~L~l~~~~-~~~--~~~l~~~~~L~~L~l~~n~~~~ 271 (319)
++ .++ .+..+++|++|++++|. +++ ++.+..+++|++|++++|. +.. +..+..+++|++|++++| +++
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 43 232 24567888888888887 443 3457777888888888885 221 234677888888888888 554
Q ss_pred CcccccccCCCCCcEEEcCCCcCcCC
Q psy14728 272 WNTVNVLENNKQLQTIYLDRNPVAQD 297 (319)
Q Consensus 272 ~~~~~~~~~~~~L~~L~l~~n~~~~~ 297 (319)
... ..+. .++..|++++|.++..
T Consensus 286 ~~~-~~l~--~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 286 GTL-QLLK--EALPHLQINCSHFTTI 308 (336)
T ss_dssp TCH-HHHH--HHSTTSEESCCCSCCT
T ss_pred HHH-HHHH--hhCcceEEecccCccc
Confidence 222 2221 2244455777777754
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=2.2e-19 Score=158.31 Aligned_cols=219 Identities=21% Similarity=0.208 Sum_probs=140.1
Q ss_pred hcccccccceEEEecCCcccCcc------ccccCC-CCCEEEccCCCccCc--cCCCCC-----CCCcEEEccCCCCccc
Q psy14728 53 DEESKEVCIERLLLRWNLIKKIE------NIHMLT-TLKELELYDNQLTVI--ENLDTL-----INLEILDLSFNRIREI 118 (319)
Q Consensus 53 ~~~~~~~~L~~L~l~~~~~~~l~------~~~~~~-~L~~L~l~~~~~~~~--~~~~~l-----~~L~~L~l~~~~~~~l 118 (319)
..+...++|+.|++++|.+++.+ .+..++ +|++|++++|.++.. ..+..+ ++|++|++++|.+...
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 44445556888888888887653 356777 888888888887743 223332 7888888888887754
Q ss_pred c------CCCCC-CCccEEEccCCcccccC------CCCC-CCCccEEEccCCcCcCc------cccCCCC-CccEEEcC
Q psy14728 119 K------GLDHL-ANLEKLYLCSNKISKIE------NVDH-LKKLKVLELGDNKIRII------ENLDGLT-NLEELYLG 177 (319)
Q Consensus 119 ~------~~~~l-~~L~~L~l~~~~~~~~~------~~~~-~~~L~~L~l~~~~~~~~------~~l~~~~-~L~~L~l~ 177 (319)
+ .+..+ ++|++|++++|.++..+ .+.. .++|++|++++|.+... ..+...+ +|++|+++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 3 13344 67888888888877643 1334 35788888888776521 1223343 77788887
Q ss_pred CCCCcccc------CCCCC-CCCCEEECCCCCCCC-----Cc-CCcC-CCCCCeEeccCCcCcCcc------ccCCCCCc
Q psy14728 178 KNKISRID------NLASL-TKLNILSLQCNRLRT-----IE-NLEA-LTNLTQLYLSENGLTTIE------NLLSNEKL 237 (319)
Q Consensus 178 ~~~l~~~~------~l~~~-~~L~~L~l~~~~~~~-----~~-~~~~-~~~L~~L~l~~~~~~~~~------~~~~~~~L 237 (319)
+|.+.+.. .+... ++|++|++++|.+.. ++ .+.. .++|++|++++|.++..+ .+..+++|
T Consensus 176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L 255 (362)
T 3goz_A 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTC
T ss_pred CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCc
Confidence 77766542 23344 477777777777765 22 1322 457777777777776542 14556777
Q ss_pred cEEEccCCCCCCc---------cccccCCCCcEEEcCCCcCCC
Q psy14728 238 ETLDVAYNKISII---------QNIAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 238 ~~L~l~~~~~~~~---------~~l~~~~~L~~L~l~~n~~~~ 271 (319)
++|++++|.+..+ ..+..+++|++|++++|++.+
T Consensus 256 ~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp SEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred cEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 7777777764322 235566677777777777665
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=2e-19 Score=156.89 Aligned_cols=208 Identities=19% Similarity=0.199 Sum_probs=99.5
Q ss_pred CCEEEccCCCccCccCCCCC--CCCcEEEccCCCCcccc-CCCCCCCccEEEccCCcccc--cC-CCCCCCCccEEEccC
Q psy14728 83 LKELELYDNQLTVIENLDTL--INLEILDLSFNRIREIK-GLDHLANLEKLYLCSNKISK--IE-NVDHLKKLKVLELGD 156 (319)
Q Consensus 83 L~~L~l~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~ 156 (319)
++.++++++.+. ...+..+ +.++.|+++++.+...+ .+..+++|++|++++|.++. ++ .+..+++|++|++++
T Consensus 49 ~~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~ 127 (336)
T 2ast_B 49 WQTLDLTGKNLH-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127 (336)
T ss_dssp SSEEECTTCBCC-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred heeeccccccCC-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence 455555555443 1112333 45555555555544332 34445555555555555443 22 344555555555555
Q ss_pred CcCc--CccccCCCCCccEEEcCCC-CCcc--cc-CCCCCCCCCEEECCCC-CCCC--Cc-CCcCCC-CCCeEeccCCc-
Q psy14728 157 NKIR--IIENLDGLTNLEELYLGKN-KISR--ID-NLASLTKLNILSLQCN-RLRT--IE-NLEALT-NLTQLYLSENG- 224 (319)
Q Consensus 157 ~~~~--~~~~l~~~~~L~~L~l~~~-~l~~--~~-~l~~~~~L~~L~l~~~-~~~~--~~-~~~~~~-~L~~L~l~~~~- 224 (319)
|.+. .+..+..+++|++|++++| .+++ ++ .+..+++|++|++++| .++. ++ .+..++ +|++|++++|.
T Consensus 128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence 5543 1223444555555555555 3332 21 2444555555555555 4443 11 134445 55555555552
Q ss_pred -Cc--Cccc-cCCCCCccEEEccCCC-CCC--ccccccCCCCcEEEcCCCc-CCCCcccccccCCCCCcEEEcCCC
Q psy14728 225 -LT--TIEN-LLSNEKLETLDVAYNK-ISI--IQNIAHLTELQEFWINDNQ-VSDWNTVNVLENNKQLQTIYLDRN 292 (319)
Q Consensus 225 -~~--~~~~-~~~~~~L~~L~l~~~~-~~~--~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n 292 (319)
++ .++. +..+++|++|++++|. ++. ++.+..+++|++|++++|. ++. .....+..+++|+.|++++|
T Consensus 208 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-ETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTS
T ss_pred cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-HHHHHHhcCCCCCEEeccCc
Confidence 22 2222 3445555555555555 332 3345555555555555553 222 11223445555555555555
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=2e-19 Score=158.63 Aligned_cols=235 Identities=20% Similarity=0.226 Sum_probs=167.9
Q ss_pred EEEecCCcccCc-cccc-cCCCCCEEEccCCCccCc------cCCCCCC-CCcEEEccCCCCcccc--CCCCC-----CC
Q psy14728 63 RLLLRWNLIKKI-ENIH-MLTTLKELELYDNQLTVI------ENLDTLI-NLEILDLSFNRIREIK--GLDHL-----AN 126 (319)
Q Consensus 63 ~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~------~~~~~l~-~L~~L~l~~~~~~~l~--~~~~l-----~~ 126 (319)
.+.++++.+++. +.+. ..++|++|++++|.++.. ..+..++ +|++|++++|.+.... .+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 356778888764 4444 445599999999988754 3366777 8999999999887643 23332 88
Q ss_pred ccEEEccCCcccccC------CCCCC-CCccEEEccCCcCcCcc--c----cCC-CCCccEEEcCCCCCccc------cC
Q psy14728 127 LEKLYLCSNKISKIE------NVDHL-KKLKVLELGDNKIRIIE--N----LDG-LTNLEELYLGKNKISRI------DN 186 (319)
Q Consensus 127 L~~L~l~~~~~~~~~------~~~~~-~~L~~L~l~~~~~~~~~--~----l~~-~~~L~~L~l~~~~l~~~------~~ 186 (319)
|++|++++|.++... .+..+ ++|++|++++|.+.... . +.. .++|++|++++|.+.+. ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999887643 24445 78999999999886432 1 333 36899999999987753 22
Q ss_pred CCCCC-CCCEEECCCCCCCCCc------CCcCC-CCCCeEeccCCcCcC-----ccc-cCC-CCCccEEEccCCCCCCcc
Q psy14728 187 LASLT-KLNILSLQCNRLRTIE------NLEAL-TNLTQLYLSENGLTT-----IEN-LLS-NEKLETLDVAYNKISIIQ 251 (319)
Q Consensus 187 l~~~~-~L~~L~l~~~~~~~~~------~~~~~-~~L~~L~l~~~~~~~-----~~~-~~~-~~~L~~L~l~~~~~~~~~ 251 (319)
+...+ +|++|++++|+++... .+... ++|++|++++|.++. ++. +.. +++|++|++++|.++...
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34444 8999999999886542 23444 589999999999886 332 333 468999999999887642
Q ss_pred ------ccccCCCCcEEEcCCCcCCCCcc------cccccCCCCCcEEEcCCCcCcCC
Q psy14728 252 ------NIAHLTELQEFWINDNQVSDWNT------VNVLENNKQLQTIYLDRNPVAQD 297 (319)
Q Consensus 252 ------~l~~~~~L~~L~l~~n~~~~~~~------~~~~~~~~~L~~L~l~~n~~~~~ 297 (319)
.+..+++|++|++++|.+..... ...+..+++|+.|++++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 25677889999999998444221 13456778888999999988765
No 102
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=4.4e-20 Score=173.10 Aligned_cols=283 Identities=14% Similarity=0.089 Sum_probs=157.4
Q ss_pred cCCCCcchhhhhccCchhhcccccccceEEEecCCcccCc-----cc-cccCCCCCEEEccCCCccCc-----cC-CCCC
Q psy14728 35 LDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKI-----EN-IHMLTTLKELELYDNQLTVI-----EN-LDTL 102 (319)
Q Consensus 35 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-----~~-~~~~~~L~~L~l~~~~~~~~-----~~-~~~l 102 (319)
++.++++.+..............+++|++|++++|.+.+. +. ...+++|++|+++++.++.+ .. +.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 5555555544222111222334677777777777766532 11 34567777777777766522 11 3567
Q ss_pred CCCcEEEccCCCCcccc-CCCCCCCccEEEccCCccc-----ccCCCCCCCCccEEEccCCcCcCcc-ccCCCCCccEEE
Q psy14728 103 INLEILDLSFNRIREIK-GLDHLANLEKLYLCSNKIS-----KIENVDHLKKLKVLELGDNKIRIIE-NLDGLTNLEELY 175 (319)
Q Consensus 103 ~~L~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~ 175 (319)
++|++|++++|.+..++ .+..+++|++|+++..... ....+..+++|+.+.+.......++ .+..+++|++|+
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence 77778877777766554 2444566666666532211 0113445555666655554333222 233455666666
Q ss_pred cCCCCCccc---cCCC------------------------CCCCCCEEECCC-----------CCCCC--CcC-CcCCCC
Q psy14728 176 LGKNKISRI---DNLA------------------------SLTKLNILSLQC-----------NRLRT--IEN-LEALTN 214 (319)
Q Consensus 176 l~~~~l~~~---~~l~------------------------~~~~L~~L~l~~-----------~~~~~--~~~-~~~~~~ 214 (319)
+++|.+... ..+. .+++|++|++++ +.++. +.. ...+++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE 379 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc
Confidence 666553321 1123 345556666552 22221 111 234566
Q ss_pred CCeEeccCCcCcCc--cccC-CCCCccEEEcc----CCCCCCc------c-ccccCCCCcEEEcCCCc--CCCCcccccc
Q psy14728 215 LTQLYLSENGLTTI--ENLL-SNEKLETLDVA----YNKISII------Q-NIAHLTELQEFWINDNQ--VSDWNTVNVL 278 (319)
Q Consensus 215 L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~----~~~~~~~------~-~l~~~~~L~~L~l~~n~--~~~~~~~~~~ 278 (319)
|+.|+++.+.+++. ..+. .+++|++|+++ .+.+++. + .+.++++|++|++++|. +++.......
T Consensus 380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence 77777765665532 2233 36778888875 4455542 1 14567888888887543 5553332333
Q ss_pred cCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 279 ENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 279 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
..+++|+.|++++|+++.... ..+...|++|+.|++++|
T Consensus 460 ~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGESDEGL--MEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp HSCTTCCEEEECSCCSSHHHH--HHHHTCCTTCCEEEEESC
T ss_pred HhCccceEeeccCCCCCHHHH--HHHHhcCcccCeeeccCC
Confidence 468899999999998765322 235678999999999987
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=4.7e-17 Score=142.69 Aligned_cols=207 Identities=22% Similarity=0.279 Sum_probs=115.0
Q ss_pred ccceEEEecCCcccCccc--cccCCCCCEEEccCCCcc-Ccc--CCCCCCCCcE-EEccCCCCcccc--CCCCCCCccEE
Q psy14728 59 VCIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLT-VIE--NLDTLINLEI-LDLSFNRIREIK--GLDHLANLEKL 130 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~-~~~--~~~~l~~L~~-L~l~~~~~~~l~--~~~~l~~L~~L 130 (319)
+++++|++++|.|+.++. |.++++|++|+|++|++. .++ .+.+++++++ +.+..|.+..++ .+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 456666676666666642 566666777777666653 222 2556665554 344556666654 35566666666
Q ss_pred EccCCcccccCC--CCCCCCccEEEccC-CcCcCcc--ccCCC-CCccEEEcCCCCCccc-cCCCCCCCCCEEECCC-CC
Q psy14728 131 YLCSNKISKIEN--VDHLKKLKVLELGD-NKIRIIE--NLDGL-TNLEELYLGKNKISRI-DNLASLTKLNILSLQC-NR 202 (319)
Q Consensus 131 ~l~~~~~~~~~~--~~~~~~L~~L~l~~-~~~~~~~--~l~~~-~~L~~L~l~~~~l~~~-~~l~~~~~L~~L~l~~-~~ 202 (319)
++++|.++.++. +....++..+++.+ +.+..++ .+..+ ..++.|++++|.++.+ +......+++++.+.+ |.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 666666666543 23334455555543 3333222 23333 3466666666666655 2333445566666653 45
Q ss_pred CCCCcC--CcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCC-CCCCccccccCCCCcEEEcCC
Q psy14728 203 LRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYN-KISIIQNIAHLTELQEFWIND 266 (319)
Q Consensus 203 ~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~ 266 (319)
++.++. +..+++|+.|++++|+++.+|. ..+.+|++|.+.++ .++.++.+..+++|+.+++.+
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 555543 5566666666666666666653 22445555554433 345555566666666666654
No 104
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=3.7e-20 Score=173.67 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=41.7
Q ss_pred CCCCCccEEEccCCCCCC--cccccc-CCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhC
Q psy14728 232 LSNEKLETLDVAYNKISI--IQNIAH-LTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVC 308 (319)
Q Consensus 232 ~~~~~L~~L~l~~~~~~~--~~~l~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 308 (319)
..+++|++|++++ .++. ++.+.. +++|++|++++|.+++........++++|+.|++++|+++.. .. ......+
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~-~~-~~~~~~l 505 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK-AL-LANASKL 505 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH-HH-HHTGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH-HH-HHHHHhC
Confidence 3445555555544 3321 122222 556666666666655432222224566666666666665221 11 1233445
Q ss_pred CceEEEecccC
Q psy14728 309 PWIVQIDATLA 319 (319)
Q Consensus 309 ~~L~~l~~~~C 319 (319)
++|+.|++++|
T Consensus 506 ~~L~~L~l~~~ 516 (594)
T 2p1m_B 506 ETMRSLWMSSC 516 (594)
T ss_dssp GGSSEEEEESS
T ss_pred CCCCEEeeeCC
Confidence 66666666655
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=4.5e-21 Score=178.04 Aligned_cols=125 Identities=24% Similarity=0.343 Sum_probs=113.1
Q ss_pred CCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCC
Q psy14728 192 KLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVS 270 (319)
Q Consensus 192 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 270 (319)
.|+.|++++|.++.+|.++.+++|+.|++++|.++.+|. +..+++|+.|++++|.+++++.+..+++|++|++++|+++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence 488999999999998888999999999999999998874 8899999999999999999989999999999999999999
Q ss_pred CCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEec
Q psy14728 271 DWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDA 316 (319)
Q Consensus 271 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~ 316 (319)
+...+..+..+++|+.|++++|+++..+.....+...+|+|+.|++
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8643578899999999999999999988776677888999999975
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=2.3e-16 Score=138.35 Aligned_cols=224 Identities=21% Similarity=0.245 Sum_probs=164.7
Q ss_pred eEEEecCCcccCccc-cccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcc-cc--CCCCCCCccE-EEccC
Q psy14728 62 ERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIRE-IK--GLDHLANLEK-LYLCS 134 (319)
Q Consensus 62 ~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~-l~--~~~~l~~L~~-L~l~~ 134 (319)
++++.+++.++.+|. + .+++++|+|++|+++.++ .|.++++|++|++++|.+.. ++ .+..++++.+ +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 567888888888874 4 368999999999998664 38889999999999998754 54 3677777765 55667
Q ss_pred CcccccC--CCCCCCCccEEEccCCcCcCccc--cCCCCCccEEEcCC-CCCcccc--CCCCC-CCCCEEECCCCCCCCC
Q psy14728 135 NKISKIE--NVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGK-NKISRID--NLASL-TKLNILSLQCNRLRTI 206 (319)
Q Consensus 135 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~-~~l~~~~--~l~~~-~~L~~L~l~~~~~~~~ 206 (319)
|+++.++ .+..+++|++|++++|.+..++. +....++..+++.. +.+..++ .+..+ ..++.|++++|+++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 8888764 57888999999999988876543 34456677777755 4455552 34444 3578899999999887
Q ss_pred cC-CcCCCCCCeEeccC-CcCcCccc--cCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCC-cCCCCcccccccCC
Q psy14728 207 EN-LEALTNLTQLYLSE-NGLTTIEN--LLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDN-QVSDWNTVNVLENN 281 (319)
Q Consensus 207 ~~-~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~~~ 281 (319)
+. .....+++++.+.+ |.++.+|. +..+++|+.|++++|+++.++. ..+.+|+.|.+.++ .+... ..+..+
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~l---P~l~~l 245 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKL---PTLEKL 245 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCC---CCTTTC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcC---CCchhC
Confidence 54 44567888998875 67888764 6888999999999999988763 33567777777665 34433 346778
Q ss_pred CCCcEEEcCC
Q psy14728 282 KQLQTIYLDR 291 (319)
Q Consensus 282 ~~L~~L~l~~ 291 (319)
++|+.+++.+
T Consensus 246 ~~L~~l~l~~ 255 (350)
T 4ay9_X 246 VALMEASLTY 255 (350)
T ss_dssp CSCCEEECSC
T ss_pred cChhhCcCCC
Confidence 8899998875
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=6.9e-16 Score=127.06 Aligned_cols=165 Identities=24% Similarity=0.291 Sum_probs=117.9
Q ss_pred ccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCc
Q psy14728 149 LKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224 (319)
Q Consensus 149 L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~ 224 (319)
.+.++++++.+..++. .-.++|++|++++|.+..+ ..+..+++|+.|++++|++..++. +..+++|+.|++++|+
T Consensus 21 ~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 3445555555544432 1126777777777777665 346677788888888888877653 6778888888888888
Q ss_pred CcCccc--cCCCCCccEEEccCCCCCCcc-ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChh--
Q psy14728 225 LTTIEN--LLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN-- 299 (319)
Q Consensus 225 ~~~~~~--~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-- 299 (319)
++.++. +..+++|+.|++++|.++.++ .+..+++|++|++++|+++..+. ..+..+++|+.|++++|++.+.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcchh
Confidence 887764 677888999999998888764 57888999999999999887543 567888999999999999998775
Q ss_pred --hHHHHHHhCCceEEEe
Q psy14728 300 --YRRKIKLVCPWIVQID 315 (319)
Q Consensus 300 --~~~~~~~~~~~L~~l~ 315 (319)
+...+....+.+..++
T Consensus 179 ~~l~~~~~~~~~~~~~~~ 196 (229)
T 3e6j_A 179 MYLRNWVADHTSIAMRWD 196 (229)
T ss_dssp HHHHHHHHHCGGGEEEES
T ss_pred HHHHHHHHhCcccccccc
Confidence 2223334444554443
No 108
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.71 E-value=2.3e-17 Score=130.24 Aligned_cols=134 Identities=23% Similarity=0.332 Sum_probs=94.8
Q ss_pred CCCCCCCCCEEECCCCCCCCCcCCcCCC-CCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCcc-c-cccCCCCcEE
Q psy14728 186 NLASLTKLNILSLQCNRLRTIENLEALT-NLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQ-N-IAHLTELQEF 262 (319)
Q Consensus 186 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~-l~~~~~L~~L 262 (319)
.+..+++|++|++++|+++.++.+..+. +|+.|++++|.+++++.+..+++|++|++++|.++.++ . +..+++|++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3455666777777777776665554444 77777777777777766777777777777777777654 2 4677788888
Q ss_pred EcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 263 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
++++|++++++....+..+++|+.|++++|++...+.++...+..+|+|+.||++.+
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 888887776544346677778888888888887777766666777888888877653
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=9.8e-16 Score=125.33 Aligned_cols=150 Identities=21% Similarity=0.315 Sum_probs=110.6
Q ss_pred EEEccCCcCcCccc-cCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCCC--cCCcCCCCCCeEeccCCcC
Q psy14728 151 VLELGDNKIRIIEN-LDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGL 225 (319)
Q Consensus 151 ~L~l~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~ 225 (319)
.++++++.+..++. +. ++++.|++++|.+..++ .+..+++|+.|++++|+++.+ ..+..+++|+.|++++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 44555554443332 21 46777777777766653 466777777777777777665 3477788888888888888
Q ss_pred cCccc--cCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhH
Q psy14728 226 TTIEN--LLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYR 301 (319)
Q Consensus 226 ~~~~~--~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 301 (319)
+.++. +..+++|+.|++++|.++.+ ..+..+++|++|++++|+++..+ ...+..+++|+.|++++|++.+++...
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 87764 67788888888888888875 35788899999999999998854 356778899999999999999988875
Q ss_pred HH
Q psy14728 302 RK 303 (319)
Q Consensus 302 ~~ 303 (319)
+.
T Consensus 172 ~l 173 (220)
T 2v9t_B 172 WL 173 (220)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=3.8e-16 Score=126.64 Aligned_cols=162 Identities=25% Similarity=0.347 Sum_probs=84.1
Q ss_pred CEEEccCCCccCccCCCCCCCCcEEEccCCCCccccC--CCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcC
Q psy14728 84 KELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI 161 (319)
Q Consensus 84 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 161 (319)
+.++++++.++.++. ...++|++|++++|.+..++. +..+++|++|++++|.++.++.
T Consensus 10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------- 69 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN------------------- 69 (208)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-------------------
T ss_pred CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-------------------
Confidence 345555555544331 123456666666666555442 4455555555555555554431
Q ss_pred ccccCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--cCCCC
Q psy14728 162 IENLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNE 235 (319)
Q Consensus 162 ~~~l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~ 235 (319)
..+..+++|++|++++|.+..++ .+..+++|++|++++|+++.++. +..+++|++|++++|.+++++. +..++
T Consensus 70 -~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 70 -GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp -TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred -hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 01334444444444444444432 13455555555555555554432 4555666666666666655543 45556
Q ss_pred CccEEEccCCCCCCccccccCCCCcEEEcCCCcCCC
Q psy14728 236 KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 236 ~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 271 (319)
+|++|++++|.+. ..+++|++|+++.|++++
T Consensus 149 ~L~~L~l~~N~~~-----~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 149 SLQYIWLHDNPWD-----CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp TCCEEECCSCCBC-----CCTTTTHHHHHHHHHCTT
T ss_pred CccEEEecCCCee-----cCCCCHHHHHHHHHhCCc
Confidence 6666666666432 344566666666666665
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=3.7e-16 Score=137.61 Aligned_cols=175 Identities=24% Similarity=0.328 Sum_probs=110.3
Q ss_pred cEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccC-CCCCccEEEcCCCCCccc
Q psy14728 106 EILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLD-GLTNLEELYLGKNKISRI 184 (319)
Q Consensus 106 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~ 184 (319)
+.++++++.++.+|.- -.+.++.|++++|.++.++. ..+. .+++|++|++++|.+..+
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~--------------------~~~~~~l~~L~~L~L~~N~i~~i 79 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRA--------------------EWTPTRLTNLHSLLLSHNHLNFI 79 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECT--------------------TSSSSCCTTCCEEECCSSCCCEE
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccCh--------------------hhhhhcccccCEEECCCCcCCcc
Confidence 4566676666666531 12346666666666665431 1122 344555555555554444
Q ss_pred c--CCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCccc--c---
Q psy14728 185 D--NLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQN--I--- 253 (319)
Q Consensus 185 ~--~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--l--- 253 (319)
+ .+..+++|++|++++|+++.++. +..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++. +
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~ 159 (361)
T 2xot_A 80 SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred ChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc
Confidence 2 35555666666666666655432 566677777777777777653 36677778888888887776542 2
Q ss_pred ccCCCCcEEEcCCCcCCCCcccccccCCCC--CcEEEcCCCcCcCChhhHH
Q psy14728 254 AHLTELQEFWINDNQVSDWNTVNVLENNKQ--LQTIYLDRNPVAQDPNYRR 302 (319)
Q Consensus 254 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~ 302 (319)
..+++|++|++++|+++..+. ..+..++. ++.|++++|++.+++...+
T Consensus 160 ~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp --CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred ccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEEecCCCccCCcCcHH
Confidence 568889999999998887543 45666666 4789999999999987644
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=1.8e-18 Score=162.24 Aligned_cols=104 Identities=7% Similarity=0.102 Sum_probs=68.1
Q ss_pred CCCCCeEeccCCcCcCc--ccc-CCCCCccEEEcc--C----CCCCCcc-------ccccCCCCcEEEcCCCcCCCCccc
Q psy14728 212 LTNLTQLYLSENGLTTI--ENL-LSNEKLETLDVA--Y----NKISIIQ-------NIAHLTELQEFWINDNQVSDWNTV 275 (319)
Q Consensus 212 ~~~L~~L~l~~~~~~~~--~~~-~~~~~L~~L~l~--~----~~~~~~~-------~l~~~~~L~~L~l~~n~~~~~~~~ 275 (319)
+++|+.|.+..+.++.. ..+ ..+++|++|+++ + +.++..+ .+..+++|++|++++ .+++...
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~- 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF- 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH-
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH-
Confidence 56666666655555532 222 356788888888 3 3454321 145678888888877 5665332
Q ss_pred cccc-CCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 276 NVLE-NNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 276 ~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
..+. .+++|+.|++++|.++.... ..+...|++|+.|++++|
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGM--HHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHH--HHHHHHCTTCCEEEEESC
T ss_pred HHHHHhchhccEeeccCCCCcHHHH--HHHHhcCCCcCEEECcCC
Confidence 3333 48899999999998755322 234467999999999987
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=1.2e-15 Score=124.76 Aligned_cols=132 Identities=21% Similarity=0.345 Sum_probs=95.5
Q ss_pred CccEEEcCCCCCcccc---CCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEc
Q psy14728 170 NLEELYLGKNKISRID---NLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDV 242 (319)
Q Consensus 170 ~L~~L~l~~~~l~~~~---~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l 242 (319)
.+++|++++|.+..++ .+..+++|+.|++++|+++.++ .+..+++|++|++++|.+++++. +..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 4456666666665541 2556677777777777776653 36777778888888887777653 677788888888
Q ss_pred cCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHH
Q psy14728 243 AYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRR 302 (319)
Q Consensus 243 ~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 302 (319)
++|.++.+ ..+..+++|++|++++|++++. .+..+..+++|+.|++++|++.+++...+
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~c~c~l~~ 173 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANPFNCNCYLAW 173 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCCEECSGGGHH
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcCCcCCCchHH
Confidence 88888765 3477888888888888888874 33667788888888888888888877644
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=4e-16 Score=122.12 Aligned_cols=129 Identities=23% Similarity=0.289 Sum_probs=81.0
Q ss_pred CCCCEEECCCCCCC--CCcC-CcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCC-ccc-cccCCCCcEEEcC
Q psy14728 191 TKLNILSLQCNRLR--TIEN-LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISI-IQN-IAHLTELQEFWIN 265 (319)
Q Consensus 191 ~~L~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-l~~~~~L~~L~l~ 265 (319)
+++++|++++|.+. .++. +..+++|+.|++++|.++.++.+..+++|++|++++|.++. ++. +..+++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 45666666666655 3443 35566666666666666666556666666777777666665 433 3346677777777
Q ss_pred CCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728 266 DNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 266 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C 319 (319)
+|++++++.+..+..+++|+.|++++|+++..+.+....+..+|+|+.|++++|
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 777666544455666677777777777777666655555666777777766654
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=4.2e-16 Score=119.46 Aligned_cols=129 Identities=22% Similarity=0.316 Sum_probs=107.9
Q ss_pred CCCCCEEECCCCCCC--CCcC-CcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCC-ccc-cccCCCCcEEEc
Q psy14728 190 LTKLNILSLQCNRLR--TIEN-LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISI-IQN-IAHLTELQEFWI 264 (319)
Q Consensus 190 ~~~L~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-l~~~~~L~~L~l 264 (319)
.++++.|++++|.++ .++. +..+++|+.|++++|.+++++.+..+++|++|++++|.++. ++. +..+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 356778888888776 4544 57788889999999888888778888999999999999987 554 456899999999
Q ss_pred CCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEeccc
Q psy14728 265 NDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL 318 (319)
Q Consensus 265 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~ 318 (319)
++|++++.+.+..+..+++|+.|++++|+++..+.+....+..+|+|+.||+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999865557788999999999999999999887667889999999999874
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.5e-14 Score=117.20 Aligned_cols=159 Identities=26% Similarity=0.392 Sum_probs=87.2
Q ss_pred cEEEccCCcccccCCCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccccC--CCCCCCCCEEECCCCCC
Q psy14728 128 EKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRL 203 (319)
Q Consensus 128 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~--l~~~~~L~~L~l~~~~~ 203 (319)
+.++..++.++.++. ...+++++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|++
T Consensus 10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 455556655555442 12346666666666665333 24556666666666666655422 45566666666666666
Q ss_pred CCCcC--CcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCcCCCCccccc
Q psy14728 204 RTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNV 277 (319)
Q Consensus 204 ~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~~~~~~~~~ 277 (319)
+.++. +..+++|++|++++|++++++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------ 162 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------ 162 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence 55432 4555666666666666655543 4555566666666665554432 4555566666666654432
Q ss_pred ccCCCCCcEEEcCCCcCc
Q psy14728 278 LENNKQLQTIYLDRNPVA 295 (319)
Q Consensus 278 ~~~~~~L~~L~l~~n~~~ 295 (319)
.+++|+.|+++.|.++
T Consensus 163 --~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHS 178 (208)
T ss_dssp --CTTTTHHHHHHHHHCT
T ss_pred --CCCCHHHHHHHHHhCC
Confidence 2344555555554444
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=4.9e-19 Score=164.40 Aligned_cols=120 Identities=22% Similarity=0.295 Sum_probs=100.9
Q ss_pred CccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcC-CcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCC
Q psy14728 170 NLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN-LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248 (319)
Q Consensus 170 ~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 248 (319)
.|+.|++++|.+++++.+..+++|+.|++++|.++.+|. ++.+++|+.|++++|.++++|.+..+++|+.|++++|.++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence 588888988888888778888899999999999888754 8889999999999999999988899999999999999998
Q ss_pred Cc---cccccCCCCcEEEcCCCcCCCCccc--ccccCCCCCcEEEc
Q psy14728 249 II---QNIAHLTELQEFWINDNQVSDWNTV--NVLENNKQLQTIYL 289 (319)
Q Consensus 249 ~~---~~l~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l 289 (319)
++ ..+..+++|+.|++++|.+++.+.. ..+..+|+|+.|++
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 75 4588999999999999999875321 23455889998864
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=5.9e-15 Score=129.89 Aligned_cols=164 Identities=24% Similarity=0.323 Sum_probs=117.0
Q ss_pred CEEEccCCCccCccCCCCCCCCcEEEccCCCCccccC--CC-CCCCccEEEccCCcccccC--CCCCCCCccEEEccCCc
Q psy14728 84 KELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG--LD-HLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNK 158 (319)
Q Consensus 84 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~--~~-~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~ 158 (319)
+.++++++.++.++. .-.+.++.|++++|.++.++. +. .+++|+.|++++|.++.++ .+..+++|++|++++|.
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 689999999887654 123568999999999998863 55 8999999999999999875 57888888888888888
Q ss_pred CcCcc--ccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCcC--C---cCCCCCCeEeccCCcCcCcc
Q psy14728 159 IRIIE--NLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--L---EALTNLTQLYLSENGLTTIE 229 (319)
Q Consensus 159 ~~~~~--~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~~--~---~~~~~L~~L~l~~~~~~~~~ 229 (319)
+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|+++.++. + ..+++|+.|++++|.++.++
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 76543 366778888888888877765 346667777777777777766543 2 34666666666666666554
Q ss_pred c--cCCCCC--ccEEEccCCCCC
Q psy14728 230 N--LLSNEK--LETLDVAYNKIS 248 (319)
Q Consensus 230 ~--~~~~~~--L~~L~l~~~~~~ 248 (319)
. +..++. ++.|++++|.+.
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhhhccHhhcceEEecCCCcc
Confidence 2 344443 355666666553
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=2.1e-14 Score=117.40 Aligned_cols=140 Identities=29% Similarity=0.437 Sum_probs=76.7
Q ss_pred cEEEccCCCCccccC-CCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCC
Q psy14728 106 EILDLSFNRIREIKG-LDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNK 180 (319)
Q Consensus 106 ~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~ 180 (319)
+.++++++.++.+|. +. ++++.|++++|.++.++ .+..+++|++|++++|.+..+ ..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467777777777763 22 56777777777777654 456666666666666666533 345555566666666555
Q ss_pred CccccC--CCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCC
Q psy14728 181 ISRIDN--LASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKI 247 (319)
Q Consensus 181 l~~~~~--l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~ 247 (319)
+..++. +..+++|+.|++++|+++.++ .+..+++|+.|++++|.+++++. +..+++|++|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 555422 344555555555555554432 24444445555555554444432 33444444444444443
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=2.3e-14 Score=117.10 Aligned_cols=143 Identities=21% Similarity=0.334 Sum_probs=77.2
Q ss_pred cEEEccCCCCccccCCCCCCCccEEEccCCcccccC---CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCc
Q psy14728 106 EILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIE---NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182 (319)
Q Consensus 106 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 182 (319)
+.++++++.++.+|.- ..+.++.|++++|.++.++ .+..+++|++|++++| .+.
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N----------------------~i~ 70 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN----------------------KIT 70 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS----------------------CCC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC----------------------cCC
Confidence 3666666666666531 1234566666666666542 1344445555555544 444
Q ss_pred ccc--CCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccc
Q psy14728 183 RID--NLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIA 254 (319)
Q Consensus 183 ~~~--~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~ 254 (319)
.++ .+..+++|++|++++|+++.++. +..+++|++|++++|.+++++ .+..+++|+.|++++|.++.+ ..+.
T Consensus 71 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 71 DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence 432 34455555555555555554432 455555666666666555542 255556666666666666554 2355
Q ss_pred cCCCCcEEEcCCCcCCC
Q psy14728 255 HLTELQEFWINDNQVSD 271 (319)
Q Consensus 255 ~~~~L~~L~l~~n~~~~ 271 (319)
.+++|++|++++|.+..
T Consensus 151 ~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 151 TLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TCTTCCEEECCSCCEEC
T ss_pred CCCCCCEEEecCcCCcC
Confidence 56666666666666554
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=4.1e-14 Score=116.40 Aligned_cols=146 Identities=27% Similarity=0.365 Sum_probs=77.2
Q ss_pred CcEEEccCCCCccccCCCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCc
Q psy14728 105 LEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182 (319)
Q Consensus 105 L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 182 (319)
-+.++.+++.+..+|.- ..++|+.|++++|.++.+. .+..+++|++|++++|.+..++.
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~------------------ 81 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV------------------ 81 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh------------------
Confidence 34566666666655531 1255666666666655542 34445555555555554443321
Q ss_pred cccCCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCcc-ccCCCCCccEEEccCCCCCCcc--ccccCC
Q psy14728 183 RIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE-NLLSNEKLETLDVAYNKISIIQ--NIAHLT 257 (319)
Q Consensus 183 ~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~l~~~~ 257 (319)
..+..+++|+.|++++|+++.++. +..+++|+.|++++|+++.+| .+..+++|+.|++++|.++.++ .+..++
T Consensus 82 --~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 82 --GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp --TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred --hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 123445555555555555554432 445555556666666555554 2555566666666666665543 255566
Q ss_pred CCcEEEcCCCcCCC
Q psy14728 258 ELQEFWINDNQVSD 271 (319)
Q Consensus 258 ~L~~L~l~~n~~~~ 271 (319)
+|+.|++++|.+..
T Consensus 160 ~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 160 SLTHAYLFGNPWDC 173 (229)
T ss_dssp TCCEEECTTSCBCT
T ss_pred CCCEEEeeCCCccC
Confidence 66666666666554
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=7.8e-15 Score=127.43 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=71.3
Q ss_pred CCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCc--cccccCCCCc-EEEcCCCcCCCCcccccccCCCCCcE
Q psy14728 212 LTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISII--QNIAHLTELQ-EFWINDNQVSDWNTVNVLENNKQLQT 286 (319)
Q Consensus 212 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~ 286 (319)
+++|+.+++++|+++.++. +..|++|+++++.++ +..+ .+|.+|++|+ .+++.+ .++.. ....|.+|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI-EFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE-CTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEE-chhhhhCCccCCE
Confidence 6778888888877777764 777788888888776 5544 3477888888 888877 55553 2256778888888
Q ss_pred EEcCCCcCcCChhhHHHHHHhCCceEEEe
Q psy14728 287 IYLDRNPVAQDPNYRRKIKLVCPWIVQID 315 (319)
Q Consensus 287 L~l~~n~~~~~~~~~~~~~~~~~~L~~l~ 315 (319)
+++++|.+..++.. .+..|++|+.+.
T Consensus 302 l~l~~n~i~~I~~~---aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDE---LFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTT---TTCTTCCCCEEE
T ss_pred EEeCCCccCccchh---hhcCCcchhhhc
Confidence 88888877776653 567788887765
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.2e-14 Score=113.67 Aligned_cols=132 Identities=25% Similarity=0.283 Sum_probs=95.5
Q ss_pred CCCccEEEcCCCCCc--cccC-CCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcC-ccc-cCCCCCccEEEc
Q psy14728 168 LTNLEELYLGKNKIS--RIDN-LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT-IEN-LLSNEKLETLDV 242 (319)
Q Consensus 168 ~~~L~~L~l~~~~l~--~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~L~~L~l 242 (319)
.++++.|++++|.+. .++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.+++ +|. +..+++|+.|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 356677777776665 4432 46667777777777777666567777888888888888777 554 445788888888
Q ss_pred cCCCCCCc---cccccCCCCcEEEcCCCcCCCCcc--cccccCCCCCcEEEcCCCcCcCChh
Q psy14728 243 AYNKISII---QNIAHLTELQEFWINDNQVSDWNT--VNVLENNKQLQTIYLDRNPVAQDPN 299 (319)
Q Consensus 243 ~~~~~~~~---~~l~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~ 299 (319)
++|.++.+ +.+..+++|++|++++|.+++.+. ...+..+++|+.|++++|+....|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 88888775 357788888888888888887542 1367788888888888888776654
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=4.7e-15 Score=116.91 Aligned_cols=130 Identities=23% Similarity=0.269 Sum_probs=96.2
Q ss_pred hcccccccceEEEecCCcccCccccccCC-CCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccC--CCCCCCccE
Q psy14728 53 DEESKEVCIERLLLRWNLIKKIENIHMLT-TLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG--LDHLANLEK 129 (319)
Q Consensus 53 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~ 129 (319)
..+..+++|+.|++++|.++.++.+..+. +|++|++++|.++.++.+..+++|++|++++|.+..++. +..+++|++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34667888899999988888887766555 888999988888877778888888888888888887763 367788888
Q ss_pred EEccCCcccccC---CCCCCCCccEEEccCCcCcCccc-----cCCCCCccEEEcCCCCCc
Q psy14728 130 LYLCSNKISKIE---NVDHLKKLKVLELGDNKIRIIEN-----LDGLTNLEELYLGKNKIS 182 (319)
Q Consensus 130 L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~-----l~~~~~L~~L~l~~~~l~ 182 (319)
|++++|.++.++ .+..+++|+.|++++|.+...+. +..+++|+.|+++.+...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888877654 35667777777777776654432 455666666666666543
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.1e-13 Score=110.58 Aligned_cols=130 Identities=20% Similarity=0.256 Sum_probs=105.3
Q ss_pred cEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc-CCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCC
Q psy14728 172 EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE-NLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKIS 248 (319)
Q Consensus 172 ~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~ 248 (319)
+.++++++.+..++.- -.+++++|++++|.++.++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.++
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 5677777777766431 1357888888888888775 47788999999999999988764 788899999999999998
Q ss_pred Ccc--ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHH
Q psy14728 249 IIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRK 303 (319)
Q Consensus 249 ~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 303 (319)
.++ .+..+++|++|++++|+++..+ ...+..+++|+.|++++|++.+++...+.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~C~c~l~~l 147 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLYCDCNMQWL 147 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCeecCCcCHHH
Confidence 764 4888999999999999999753 25678899999999999999999887553
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=1.2e-13 Score=110.38 Aligned_cols=129 Identities=24% Similarity=0.248 Sum_probs=97.3
Q ss_pred cEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcC---CcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCC
Q psy14728 172 EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN---LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNK 246 (319)
Q Consensus 172 ~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~ 246 (319)
+.++++++.+..++.- -..++++|++++|++..++. +..+++|++|++++|++++++ .+..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 5677777777666431 12377888888888777542 677888888888888888763 37788888888888888
Q ss_pred CCCcc--ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHH
Q psy14728 247 ISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRR 302 (319)
Q Consensus 247 ~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 302 (319)
++.++ .+..+++|++|++++|++++. .+..+..+++|+.|++++|++.+++...+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~c~c~l~~ 146 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNPFNCNCHLAW 146 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCee-CHHHhhcCCCCCEEEeCCCCccCcCcchH
Confidence 88653 377888899999999988873 34667788889999999999988877544
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=3e-14 Score=109.04 Aligned_cols=124 Identities=24% Similarity=0.303 Sum_probs=98.7
Q ss_pred CCCccEEEcCCCCCc--ccc-CCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcC-ccc-cCCCCCccEEEc
Q psy14728 168 LTNLEELYLGKNKIS--RID-NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT-IEN-LLSNEKLETLDV 242 (319)
Q Consensus 168 ~~~L~~L~l~~~~l~--~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~L~~L~l 242 (319)
.++++.|++++|.+. .++ .+..+++|+.|++++|.++.++.+..+++|+.|++++|.+++ +|. +..+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 467888888888776 443 457788888888888888877668888899999999999887 665 455889999999
Q ss_pred cCCCCCCc---cccccCCCCcEEEcCCCcCCCCccc--ccccCCCCCcEEEcCC
Q psy14728 243 AYNKISII---QNIAHLTELQEFWINDNQVSDWNTV--NVLENNKQLQTIYLDR 291 (319)
Q Consensus 243 ~~~~~~~~---~~l~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l~~ 291 (319)
++|.++.+ ..+..+++|++|++++|.+++.+.. ..+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99998875 5688899999999999999875431 3678889999998764
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=1.9e-16 Score=127.46 Aligned_cols=132 Identities=27% Similarity=0.499 Sum_probs=100.7
Q ss_pred CCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCCCccccccCCCCcEEEc
Q psy14728 186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKISIIQNIAHLTELQEFWI 264 (319)
Q Consensus 186 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l 264 (319)
.+..+++|++|++++|.++.++.+..+++|+.|++++|.++.+|. +..+++|+.|++++|.++.++.+..+++|++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM 122 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence 455677777777777777777667777888888888888887765 4455788888888888888777778888888888
Q ss_pred CCCcCCCCcccccccCCCCCcEEEcCCCcCcCC-------hhhHHHHHHhCCceEEEecc
Q psy14728 265 NDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD-------PNYRRKIKLVCPWIVQIDAT 317 (319)
Q Consensus 265 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-------~~~~~~~~~~~~~L~~l~~~ 317 (319)
++|++++++....+..+++|+.|++++|++.+. ..+....+..+|+|+.||..
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~ 182 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence 888888755445677888888888888888765 44555667888888888743
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=7.5e-13 Score=104.28 Aligned_cols=127 Identities=24% Similarity=0.359 Sum_probs=99.6
Q ss_pred ccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCC
Q psy14728 171 LEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNK 246 (319)
Q Consensus 171 L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~ 246 (319)
.+.+++.++.+..++. ...+++++|++++|+++.++. +..+++|++|++++|.+++++. +..+++|+.|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4567777777666642 223678888888888877643 6778889999999998888764 6788899999999999
Q ss_pred CCCccc--cccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728 247 ISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN 299 (319)
Q Consensus 247 ~~~~~~--l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 299 (319)
++.++. +..+++|++|++++|.++..+ ...+..+++|+.|++++|++.+.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeC-HHHhcCCcccCEEEecCCCeeccCc
Confidence 887643 678899999999999998743 2556788999999999999998876
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=1.1e-13 Score=120.13 Aligned_cols=227 Identities=16% Similarity=0.139 Sum_probs=152.4
Q ss_pred cccceEEEecCCcccCccc-cccCCCCCEEEccCCCccCccCCCC--------CCCCcEEEccCCCCcccc--CCCCCCC
Q psy14728 58 EVCIERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVIENLDT--------LINLEILDLSFNRIREIK--GLDHLAN 126 (319)
Q Consensus 58 ~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~l~--~~~~l~~ 126 (319)
+++|+.|+|++|.+..+.. -+.++.++.+.+..+.+.. ..|.+ |++|+.++++. .++.++ .+..+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~-~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA-YAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT-TTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCH-HHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence 7889999999999883321 1233334555555553321 22555 78888888887 677665 4777888
Q ss_pred ccEEEccCCcccccC--CCCCCCCccEEEccCCcC----cCcc--ccCCCCCcc--------------------------
Q psy14728 127 LEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKI----RIIE--NLDGLTNLE-------------------------- 172 (319)
Q Consensus 127 L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~----~~~~--~l~~~~~L~-------------------------- 172 (319)
|+.+++.+|.+..++ .+..+.++..+....... ..+. .+..+..|+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 888888888776654 556666666665544211 1111 122233333
Q ss_pred EEEcCCCCCcc-ccCC-CCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--cCCCCCcc-EEEccCC
Q psy14728 173 ELYLGKNKISR-IDNL-ASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLE-TLDVAYN 245 (319)
Q Consensus 173 ~L~l~~~~l~~-~~~l-~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~-~L~l~~~ 245 (319)
.+.+.+.-... ...+ ..+++|+.+++++|+++.++. +..+++|+++++.++ ++.++. +..|++|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 23222211000 0011 137899999999999988764 889999999999987 777764 88999999 999998
Q ss_pred CCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEc
Q psy14728 246 KISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYL 289 (319)
Q Consensus 246 ~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 289 (319)
.++.+ .++.+|++|+.+++++|.++..+ ...|.++++|+.++.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~-~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLG-DELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEEC-TTTTCTTCCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccc-hhhhcCCcchhhhcc
Confidence 67655 45899999999999999998854 367899999999874
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=1e-11 Score=110.41 Aligned_cols=227 Identities=17% Similarity=0.237 Sum_probs=130.8
Q ss_pred cccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccC--CCCCCCc
Q psy14728 54 EESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKG--LDHLANL 127 (319)
Q Consensus 54 ~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L 127 (319)
.|..+ +|+.+.+..+ +..++ .|.++ +|+.+.+.. .++.+ ..|.+|++|+.++++.+.+..++. +. +.+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence 44444 5666666544 44443 24443 577777764 44433 236677777777777776666652 33 4667
Q ss_pred cEEEccCCcccccC--CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCC
Q psy14728 128 EKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCN 201 (319)
Q Consensus 128 ~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~ 201 (319)
+.+.+..+ ++.+. .|..+++|+.+.+..+ +..+ ..+.+ .+|+.+.+.. .+..+ .++..+++|+.+.+.++
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESS
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCc
Confidence 77777643 44433 5666777777777653 2211 23333 5677776633 33333 35667777777777666
Q ss_pred CCC-----CCc--CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCC
Q psy14728 202 RLR-----TIE--NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVS 270 (319)
Q Consensus 202 ~~~-----~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~ 270 (319)
.+. .++ .+..+++|+.+.+. +.++.++ .+..|.+|+.+.+..+ ++.+ .++.++ +|+.+++.+|.+.
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 543 222 26667777777776 3455554 2666777777777543 4433 346666 7777777777665
Q ss_pred CCcccccccCCC-CCcEEEcCCCc
Q psy14728 271 DWNTVNVLENNK-QLQTIYLDRNP 293 (319)
Q Consensus 271 ~~~~~~~~~~~~-~L~~L~l~~n~ 293 (319)
.... ..+.+++ .+..|++..+.
T Consensus 359 ~l~~-~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 359 QVFE-KVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp BCCC-SSCCCSCTTCCEEEECGGG
T ss_pred cccc-ccccCCCCCccEEEeCHHH
Confidence 5322 4455553 56677766543
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=3.7e-12 Score=101.70 Aligned_cols=119 Identities=29% Similarity=0.357 Sum_probs=72.7
Q ss_pred eEEEecCCcccCccccccCCCCCEEEccCCCccCccC---CCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCc
Q psy14728 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNK 136 (319)
Q Consensus 62 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~ 136 (319)
+.++++++.++.+|. .-.++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 667777777777664 112377777777777765432 667777777777777777652 46667777777777777
Q ss_pred ccccC--CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCC
Q psy14728 137 ISKIE--NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKI 181 (319)
Q Consensus 137 ~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l 181 (319)
++.++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 76654 255556666666655555422 2344445555555555443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=6.4e-12 Score=98.89 Aligned_cols=120 Identities=29% Similarity=0.460 Sum_probs=72.2
Q ss_pred ceEEEecCCcccCccccccCCCCCEEEccCCCccCccC--CCCCCCCcEEEccCCCCccccC--CCCCCCccEEEccCCc
Q psy14728 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136 (319)
Q Consensus 61 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~ 136 (319)
.+.++++++.++.++. ...++|++|++++|+++.++. +..+++|++|++++|.+..++. +..+++|+.|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4567777777776652 223677777777777765432 5667777777777777766653 5666777777777776
Q ss_pred ccccCC--CCCCCCccEEEccCCcCcCccc--cCCCCCccEEEcCCCCC
Q psy14728 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKI 181 (319)
Q Consensus 137 ~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l 181 (319)
++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 666542 4555556666665555543321 33445555555555443
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=3.9e-12 Score=101.61 Aligned_cols=119 Identities=28% Similarity=0.425 Sum_probs=76.9
Q ss_pred eEEEecCCcccCccccccCCCCCEEEccCCCccCcc-CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCccc
Q psy14728 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE-NLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKIS 138 (319)
Q Consensus 62 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~ 138 (319)
+.++++++.++.+|. .-.++|++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++
T Consensus 13 ~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 567777777777664 12357777788777777553 4677777777777777777665 3667777777777777777
Q ss_pred ccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCC
Q psy14728 139 KIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKI 181 (319)
Q Consensus 139 ~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l 181 (319)
.++ .+..+++|++|++++|.+..++ .+..+++|+.|++++|.+
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 654 3556666666666666655333 244555555555555543
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.38 E-value=3.6e-11 Score=106.86 Aligned_cols=243 Identities=16% Similarity=0.193 Sum_probs=169.0
Q ss_pred ccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEE
Q psy14728 57 KEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKL 130 (319)
Q Consensus 57 ~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L 130 (319)
.+..++.+.+.. .++.++ .|.++ +|+.+.+..+ ++.++ .|.++ +|+.+.+.. .+..++ .+..+++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 345566665544 233332 35554 6888888765 55443 36664 688998886 566665 58888999999
Q ss_pred EccCCcccccC--CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCC
Q psy14728 131 YLCSNKISKIE--NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLR 204 (319)
Q Consensus 131 ~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~ 204 (319)
++..|.++.++ .+. +.+|+.+.+..+ +..+ ..+.++++|+.+.+..+ +..+ .++.+ .+|+.+.+. +.++
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 99988888775 344 688999998754 4433 35778889999998764 4444 34555 789999884 4455
Q ss_pred CCc--CCcCCCCCCeEeccCCcCc-----Ccc--ccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCc
Q psy14728 205 TIE--NLEALTNLTQLYLSENGLT-----TIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWN 273 (319)
Q Consensus 205 ~~~--~~~~~~~L~~L~l~~~~~~-----~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~ 273 (319)
.++ .+..+++|+.+.+.++.+. .++ .+..|++|+.+.+.. .+..+ ..+.+|.+|+.+.+..+ ++..
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I- 337 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI- 337 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE-
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE-
Confidence 543 3788999999999887765 344 388999999999984 46655 45889999999999665 5543
Q ss_pred ccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCC-ceEEEec
Q psy14728 274 TVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCP-WIVQIDA 316 (319)
Q Consensus 274 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~L~~l~~ 316 (319)
....|.++ +|+.+++.+|.....+. ..+..++ .+..|.+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~---~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFE---KVWYGFPDDITVIRV 377 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCC---SSCCCSCTTCCEEEE
T ss_pred cHHhCCCC-CCCEEEEcCCCCccccc---ccccCCCCCccEEEe
Confidence 23678888 99999999997776544 2344554 5555554
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=2.7e-11 Score=95.00 Aligned_cols=104 Identities=27% Similarity=0.372 Sum_probs=78.5
Q ss_pred CEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCcC
Q psy14728 194 NILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQV 269 (319)
Q Consensus 194 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~ 269 (319)
+.++++++++..+|. ...++|+.|++++|++++++. +..+++|+.|++++|+++.++. +..+++|++|++++|++
T Consensus 15 ~~l~~~~n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCC-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 567777777776654 223778888888888887643 6778888888888888887643 57788888888888888
Q ss_pred CCCcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728 270 SDWNTVNVLENNKQLQTIYLDRNPVAQDPN 299 (319)
Q Consensus 270 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 299 (319)
+..+. ..+..+++|+.|++++|++.+.+.
T Consensus 94 ~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 94 KSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 87432 457788888888888888888875
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=8.4e-15 Score=117.76 Aligned_cols=106 Identities=33% Similarity=0.404 Sum_probs=57.9
Q ss_pred cccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccC-CCCCCCCcEEEccCCCCccccCCCCCCCccEEEc
Q psy14728 54 EESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIKGLDHLANLEKLYL 132 (319)
Q Consensus 54 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l 132 (319)
.+..+++|+.|++++|.+.+++.+..+++|++|++++|.++.++. +..+++|++|++++|.+..++.+..+++|+.|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM 122 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence 455555666666666665555555555666666666665554433 3334556666666655555554555555555555
Q ss_pred cCCcccccC---CCCCCCCccEEEccCCcC
Q psy14728 133 CSNKISKIE---NVDHLKKLKVLELGDNKI 159 (319)
Q Consensus 133 ~~~~~~~~~---~~~~~~~L~~L~l~~~~~ 159 (319)
++|.++.++ .+..+++|++|++++|.+
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 555555432 244455555555555544
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=2.5e-11 Score=94.87 Aligned_cols=105 Identities=25% Similarity=0.344 Sum_probs=82.2
Q ss_pred CCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCc
Q psy14728 193 LNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQ 268 (319)
Q Consensus 193 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~ 268 (319)
.+.+++++++++.+|. ...++++.|++++|++++++. +..+++|++|++++|+++.++. +..+++|++|++++|+
T Consensus 11 ~~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4667777777777664 224788888888888888743 7788888888888888887643 6788899999999998
Q ss_pred CCCCcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728 269 VSDWNTVNVLENNKQLQTIYLDRNPVAQDPN 299 (319)
Q Consensus 269 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 299 (319)
++..+ ...+..+++|+.|++++|++.+.+.
T Consensus 90 l~~~~-~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 90 LKSIP-RGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCC-TTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred cCEeC-HHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88743 2567888999999999999988875
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=4.4e-13 Score=128.16 Aligned_cols=147 Identities=20% Similarity=0.307 Sum_probs=64.3
Q ss_pred ccceEEEecCCcccCcc-ccccCCCCCEEEc-----cCCCccCc-cCCCCCCCCcEEEccCCCCcccc-CCCCCCCccEE
Q psy14728 59 VCIERLLLRWNLIKKIE-NIHMLTTLKELEL-----YDNQLTVI-ENLDTLINLEILDLSFNRIREIK-GLDHLANLEKL 130 (319)
Q Consensus 59 ~~L~~L~l~~~~~~~l~-~~~~~~~L~~L~l-----~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l~-~~~~l~~L~~L 130 (319)
+.++.|++.++.+...+ .+.....|..+.+ ..+.+..+ +.+..++.|+.|+|++|.+..++ .+..+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 45667777766666543 1222222333222 22223222 23566677777777777766665 35566667777
Q ss_pred EccCCcccccC-CCCCCCCccEEEccCCcCcCc-cccCCCCCccEEEcCCCCCcccc-CCCCCCCCCEEECCCCCCCC
Q psy14728 131 YLCSNKISKIE-NVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRID-NLASLTKLNILSLQCNRLRT 205 (319)
Q Consensus 131 ~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~-~l~~~~~L~~L~l~~~~~~~ 205 (319)
++++|.++.+| .+..+++|++|++++|.+..+ ..+..+++|++|++++|.+..++ .+..+++|+.|++++|.+++
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 77777666554 355666666666666666533 24555666666666666655542 35555666666666665554
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=9.9e-12 Score=118.82 Aligned_cols=107 Identities=24% Similarity=0.308 Sum_probs=48.0
Q ss_pred CCCCCCCCEEECCCCCCCCCc-CCcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCCCcc-ccccCCCCcEEE
Q psy14728 187 LASLTKLNILSLQCNRLRTIE-NLEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFW 263 (319)
Q Consensus 187 l~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~ 263 (319)
+..++.|+.|++++|.+..++ .+..+++|+.|++++|.++.+|. +..+++|+.|+|++|.++.++ .+..+++|++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 334444444444444444432 23344444444555444444432 444444555555555444332 244444455555
Q ss_pred cCCCcCCCCcccccccCCCCCcEEEcCCCcCc
Q psy14728 264 INDNQVSDWNTVNVLENNKQLQTIYLDRNPVA 295 (319)
Q Consensus 264 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 295 (319)
+++|.++.+ +..+..+++|+.|++++|++.
T Consensus 300 L~~N~l~~l--p~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 300 FFDNMVTTL--PWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCSSCCCCC--CSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCCCcc--ChhhhcCCCccEEeCCCCccC
Confidence 555544432 223444445555555555444
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=2.1e-10 Score=89.93 Aligned_cols=98 Identities=28% Similarity=0.322 Sum_probs=78.1
Q ss_pred ceEEEecCCcccCccc-cccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccC--CCCCCCccEEEccCC
Q psy14728 61 IERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSN 135 (319)
Q Consensus 61 L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~ 135 (319)
-+.++++++.+..+|. + .++|++|++++|+++.+ ..+.++++|++|++++|.+..++. +..+++|+.|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3678888888888875 3 38889999999988865 347888899999999998888874 577888888888888
Q ss_pred cccccC--CCCCCCCccEEEccCCcCc
Q psy14728 136 KISKIE--NVDHLKKLKVLELGDNKIR 160 (319)
Q Consensus 136 ~~~~~~--~~~~~~~L~~L~l~~~~~~ 160 (319)
.++.++ .+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 888775 3777888888888887765
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=3e-10 Score=88.61 Aligned_cols=100 Identities=29% Similarity=0.336 Sum_probs=78.6
Q ss_pred cceEEEecCCcccCccccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccC--CCCCCCccEEEccCC
Q psy14728 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSN 135 (319)
Q Consensus 60 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~ 135 (319)
..+.++++++.++.+|.- -.++|++|++++|+++.+ ..+.++++|++|++++|.+..++. +..+++|+.|++++|
T Consensus 10 ~~~~l~~s~n~l~~ip~~-~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG-IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCccCcc-CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 357888888888888741 247889999999988865 337888899999999998888763 677888888888888
Q ss_pred cccccC--CCCCCCCccEEEccCCcCc
Q psy14728 136 KISKIE--NVDHLKKLKVLELGDNKIR 160 (319)
Q Consensus 136 ~~~~~~--~~~~~~~L~~L~l~~~~~~ 160 (319)
.++.++ .+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 888775 3677888888888887664
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=5.9e-10 Score=97.21 Aligned_cols=106 Identities=20% Similarity=0.279 Sum_probs=75.5
Q ss_pred EEECCCC-CCCCCcCCcCCCCCCeEeccC-CcCcCccc--cCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCc
Q psy14728 195 ILSLQCN-RLRTIENLEALTNLTQLYLSE-NGLTTIEN--LLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQ 268 (319)
Q Consensus 195 ~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~ 268 (319)
.++++++ +++.+|.+..+++|++|++++ |.+++++. +..+++|+.|+|++|.+++++ .+..+++|++|+|++|+
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 4566665 666666666677788888875 77777653 777788888888888877653 46778888888888888
Q ss_pred CCCCcccccccCCCCCcEEEcCCCcCcCChhhHH
Q psy14728 269 VSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRR 302 (319)
Q Consensus 269 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 302 (319)
++..+ ...+..++ |+.|++.+|++.+++...+
T Consensus 92 l~~~~-~~~~~~~~-L~~l~l~~N~~~c~c~l~~ 123 (347)
T 2ifg_A 92 LESLS-WKTVQGLS-LQELVLSGNPLHCSCALRW 123 (347)
T ss_dssp CSCCC-STTTCSCC-CCEEECCSSCCCCCGGGHH
T ss_pred cceeC-HHHcccCC-ceEEEeeCCCccCCCccHH
Confidence 87643 23444444 8888888888888877544
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.11 E-value=2.4e-09 Score=95.10 Aligned_cols=250 Identities=17% Similarity=0.131 Sum_probs=132.8
Q ss_pred hhcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCC------------Cc---------c--CccCCCCCCCCc
Q psy14728 52 EDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDN------------QL---------T--VIENLDTLINLE 106 (319)
Q Consensus 52 ~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~------------~~---------~--~~~~~~~l~~L~ 106 (319)
..+|..|++|+.+++..+ ++.+. .+..+.+|+.+.+..+ .. . ....+.+|++|+
T Consensus 87 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~ 165 (394)
T 4fs7_A 87 EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLE 165 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCC
T ss_pred hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhcccCCCc
Confidence 357888899999988654 44332 3566666666555322 00 0 012255666777
Q ss_pred EEEccCCCCcccc--CCCCCCCccEEEccCCccccc--CCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCc
Q psy14728 107 ILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182 (319)
Q Consensus 107 ~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 182 (319)
.+.+..+. ..++ .+..+.+|+.+.+..+ ++.+ ..+..++.|+.+.+..+....-......+.|+.+.+.... .
T Consensus 166 ~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~-~ 242 (394)
T 4fs7_A 166 YVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSF-T 242 (394)
T ss_dssp EEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTC-C
T ss_pred EEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCc-e
Confidence 77765442 2232 3555666666666544 2222 1444555555554443322111112223344444443221 1
Q ss_pred cc--cCCCCCCCCCEEECCCCCCC--------------------CC--cCCcCCCCCCeEeccCCcCcCcc--ccCCCCC
Q psy14728 183 RI--DNLASLTKLNILSLQCNRLR--------------------TI--ENLEALTNLTQLYLSENGLTTIE--NLLSNEK 236 (319)
Q Consensus 183 ~~--~~l~~~~~L~~L~l~~~~~~--------------------~~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~ 236 (319)
.+ ..+..+..++.+.+..+... .+ ..+..+.+|+.+.+..+ ++.++ .+..|.+
T Consensus 243 ~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~ 321 (394)
T 4fs7_A 243 ELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS 321 (394)
T ss_dssp EECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCC
Confidence 11 22334444444444332110 01 12456677777777543 55454 3677888
Q ss_pred ccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEE
Q psy14728 237 LETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQI 314 (319)
Q Consensus 237 L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l 314 (319)
|+.+++..+ ++.+ .++.+|.+|+.+.+..+ ++.. ....|.+|++|+.+++..+ +... . ..+..|++|+.+
T Consensus 322 L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~C~~L~~i~lp~~-~~~~-~---~~F~~c~~L~~I 393 (394)
T 4fs7_A 322 LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI-GANAFQGCINLKKVELPKR-LEQY-R---YDFEDTTKFKWI 393 (394)
T ss_dssp CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTBTTCTTCCEEEEEGG-GGGG-G---GGBCTTCEEEEE
T ss_pred CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe-hHHHhhCCCCCCEEEECCC-CEEh-h---heecCCCCCcEE
Confidence 888888643 5544 35778888888888766 4443 2256788888888888654 2222 1 246678888765
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.10 E-value=7.9e-09 Score=91.74 Aligned_cols=274 Identities=13% Similarity=0.115 Sum_probs=157.8
Q ss_pred ccccCCccccCCCceEEEEEeeeccc-----cccccccCCCCcchhhhhccCchhhcccccccceEEEecCC--------
Q psy14728 3 VETVPNTDEVDNDNLVTLNVEAVENT-----HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWN-------- 69 (319)
Q Consensus 3 ~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------- 69 (319)
|+++.+-+.-+-.+|..+.+...... ..++..|+.+++... . .......|..|++|+.+.+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~c~~L~~i~~p~~l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDS-V--KMIGRCTFSGCYALKSILLPLMLKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTT-C--CEECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCC-c--eEccchhhcccccchhhcccCceeeeccee
Confidence 34444445555577777777532222 122344555555332 1 1111245666666666554321
Q ss_pred ----c---------cc--CccccccCCCCCEEEccCCCcc-CccCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEE
Q psy14728 70 ----L---------IK--KIENIHMLTTLKELELYDNQLT-VIENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLY 131 (319)
Q Consensus 70 ----~---------~~--~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~ 131 (319)
. .. +-..|..+++|+.+.+..+-.+ ....+.++.+|+.+.+..+ +..++ .+..+..|+.+.
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 0 00 1123677888999988765322 2234778888888888765 34333 355555565555
Q ss_pred ccCCcccccC-----------------------CCCCCCCccEEEccCCcCc-CccccCCCCCccEEEcCCCCCccccCC
Q psy14728 132 LCSNKISKIE-----------------------NVDHLKKLKVLELGDNKIR-IIENLDGLTNLEELYLGKNKISRIDNL 187 (319)
Q Consensus 132 l~~~~~~~~~-----------------------~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~l 187 (319)
+..+....-. .+..+..++.+.+..+... ....+..+..++.+......+. -..+
T Consensus 215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~-~~~F 293 (394)
T 4fs7_A 215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP-EKTF 293 (394)
T ss_dssp CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC-TTTT
T ss_pred cCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec-cccc
Confidence 5443322112 3344445555554433222 1123444455555544433221 1346
Q ss_pred CCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCCcE
Q psy14728 188 ASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQE 261 (319)
Q Consensus 188 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~ 261 (319)
..+.+|+.+.+..+ +..++ .+..+++|+.+++..+ ++.++ .+.+|.+|+.+.+..+ ++.+ .++.+|.+|+.
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 77888988888654 44443 3788999999999743 66665 3889999999999876 6554 46899999999
Q ss_pred EEcCCCcCCCCcccccccCCCCCcEE
Q psy14728 262 FWINDNQVSDWNTVNVLENNKQLQTI 287 (319)
Q Consensus 262 L~l~~n~~~~~~~~~~~~~~~~L~~L 287 (319)
+++..+ +.... ..+.++++|+.+
T Consensus 371 i~lp~~-~~~~~--~~F~~c~~L~~I 393 (394)
T 4fs7_A 371 VELPKR-LEQYR--YDFEDTTKFKWI 393 (394)
T ss_dssp EEEEGG-GGGGG--GGBCTTCEEEEE
T ss_pred EEECCC-CEEhh--heecCCCCCcEE
Confidence 999865 33322 457888888765
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.05 E-value=1.8e-11 Score=107.74 Aligned_cols=149 Identities=23% Similarity=0.274 Sum_probs=98.6
Q ss_pred CCCccEEEccCCcccccC------CCC-CCCCccEEEccCCcCcCc--ccc-CCCCCccEEEcCCCCCccc--cC----C
Q psy14728 124 LANLEKLYLCSNKISKIE------NVD-HLKKLKVLELGDNKIRII--ENL-DGLTNLEELYLGKNKISRI--DN----L 187 (319)
Q Consensus 124 l~~L~~L~l~~~~~~~~~------~~~-~~~~L~~L~l~~~~~~~~--~~l-~~~~~L~~L~l~~~~l~~~--~~----l 187 (319)
.+.|+.|++++|.++... .+. ..++|++|++++|.+... ..+ ..+++|++|++++|.+.+. .. +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467889999998877531 122 346888888888877521 222 2356788888888887653 11 2
Q ss_pred -CCCCCCCEEECCCCCCCCC------cCCcCCCCCCeEeccCCcCcCc------cccCCCCCccEEEccCCCCCCc----
Q psy14728 188 -ASLTKLNILSLQCNRLRTI------ENLEALTNLTQLYLSENGLTTI------ENLLSNEKLETLDVAYNKISII---- 250 (319)
Q Consensus 188 -~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~---- 250 (319)
...++|++|++++|.++.. ..+...++|++|++++|.++.. ..+..+++|++|++++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3467788888888877541 1235677788888888877642 2255667788888888877642
Q ss_pred --cccccCCCCcEEEcCCCcCCCC
Q psy14728 251 --QNIAHLTELQEFWINDNQVSDW 272 (319)
Q Consensus 251 --~~l~~~~~L~~L~l~~n~~~~~ 272 (319)
..+..+++|++|++++|.+++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 2344567788888888887763
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=7.3e-08 Score=85.46 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=60.9
Q ss_pred CCCCCCCCEEECCCCCCC-CCcCCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCc--cccccCCCCcE
Q psy14728 187 LASLTKLNILSLQCNRLR-TIENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISII--QNIAHLTELQE 261 (319)
Q Consensus 187 l~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~ 261 (319)
+..+..|+.+.+...... +-..+..+++|+.+.+. +.++.++. +..|.+|+++.+..+ ++.+ .++.+|.+|+.
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 444455555555432211 01124556666666664 33444432 666677777777643 4433 34667777777
Q ss_pred EEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEec
Q psy14728 262 FWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDA 316 (319)
Q Consensus 262 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~ 316 (319)
+.+..+ ++..+ ...|.+|++|+.+++.++... ...+..|..|+.+.+
T Consensus 339 i~ip~s-v~~I~-~~aF~~C~~L~~i~~~~~~~~------~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 339 IAIPSS-VTKIP-ESAFSNCTALNNIEYSGSRSQ------WNAISTDSGLQNLPV 385 (394)
T ss_dssp EEECTT-CCBCC-GGGGTTCTTCCEEEESSCHHH------HHTCBCCCCC-----
T ss_pred EEECcc-cCEEh-HhHhhCCCCCCEEEECCceee------hhhhhccCCCCEEEe
Confidence 777543 44322 255677777777777765321 123345666665544
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.00 E-value=4.7e-11 Score=105.13 Aligned_cols=154 Identities=22% Similarity=0.272 Sum_probs=115.1
Q ss_pred CCCccEEEccCCcCcCc--cc----cC-CCCCccEEEcCCCCCccc--cC-CCCCCCCCEEECCCCCCCCC--cC----C
Q psy14728 146 LKKLKVLELGDNKIRII--EN----LD-GLTNLEELYLGKNKISRI--DN-LASLTKLNILSLQCNRLRTI--EN----L 209 (319)
Q Consensus 146 ~~~L~~L~l~~~~~~~~--~~----l~-~~~~L~~L~l~~~~l~~~--~~-l~~~~~L~~L~l~~~~~~~~--~~----~ 209 (319)
++.|++|++++|.+... .. +. ..++|++|++++|.+.+. .. ...+++|++|++++|.++.. .. +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46789999999988632 11 22 337999999999998653 22 23456799999999998653 11 2
Q ss_pred -cCCCCCCeEeccCCcCcCc-----c-ccCCCCCccEEEccCCCCCCc------cccccCCCCcEEEcCCCcCCCCcc--
Q psy14728 210 -EALTNLTQLYLSENGLTTI-----E-NLLSNEKLETLDVAYNKISII------QNIAHLTELQEFWINDNQVSDWNT-- 274 (319)
Q Consensus 210 -~~~~~L~~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~n~~~~~~~-- 274 (319)
...++|++|++++|.++.. + .+..+++|++|++++|.++.. ..+..+++|++|++++|.+++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3568899999999998752 2 256788999999999998742 346778899999999999987432
Q ss_pred -cccccCCCCCcEEEcCCCcCcCChh
Q psy14728 275 -VNVLENNKQLQTIYLDRNPVAQDPN 299 (319)
Q Consensus 275 -~~~~~~~~~L~~L~l~~n~~~~~~~ 299 (319)
...+..+++|+.|++++|+++..+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 2334567999999999999886544
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.93 E-value=2.7e-07 Score=81.82 Aligned_cols=254 Identities=13% Similarity=0.182 Sum_probs=142.4
Q ss_pred hcccccc-cceEEEecCCcccCcc--ccccCCCCCEEEccCCC---ccCc--cCCCCCCCCcEEEccCCCCcccc--CCC
Q psy14728 53 DEESKEV-CIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQ---LTVI--ENLDTLINLEILDLSFNRIREIK--GLD 122 (319)
Q Consensus 53 ~~~~~~~-~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~---~~~~--~~~~~l~~L~~L~l~~~~~~~l~--~~~ 122 (319)
.+|..+. .|+.+.+... ++.+. .|.++.+|+.+.+..+. ++.+ ..|..+.+|+.+.+..+ ++.++ .+.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4566664 4777777643 44442 46777777777776553 3333 23666677776666544 33333 356
Q ss_pred CCCCccEEEccCCccccc--CCCCCCCCccEEEccCCcCcCc-cccCCCCCccEEEcCCCCCcc-ccCCCCCCCCCEEEC
Q psy14728 123 HLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISR-IDNLASLTKLNILSL 198 (319)
Q Consensus 123 ~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~-~~~l~~~~~L~~L~l 198 (319)
.+.+|+.+.+..+. ..+ ..+..+.+|+.+.+..+-...- ..+ ....|+.+.+....... ...+..+..++....
T Consensus 135 ~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF-~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 135 HCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDSVTAIEERAF-TGTALTQIHIPAKVTRIGTNAFSECFALSTITS 212 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTTTT-TTCCCSEEEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred hhccccccccccee-eeecccceecccccccccccceeeEeccccc-cccceeEEEECCcccccccchhhhccccceecc
Confidence 66677777665432 222 2455666666666654321111 112 12345555443221100 012222222222211
Q ss_pred CCC------------------------------------CCCCC--cCCcCCCCCCeEeccCCcCcCcc--ccCCCCCcc
Q psy14728 199 QCN------------------------------------RLRTI--ENLEALTNLTQLYLSENGLTTIE--NLLSNEKLE 238 (319)
Q Consensus 199 ~~~------------------------------------~~~~~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~ 238 (319)
... .+..+ ..+..+.+|+.+.+..... .++ .+..++.|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~ 291 (394)
T 4gt6_A 213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQ 291 (394)
T ss_dssp CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCC
T ss_pred cccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccc
Confidence 110 01111 1256778888888765433 332 377888999
Q ss_pred EEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEec
Q psy14728 239 TLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDA 316 (319)
Q Consensus 239 ~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~ 316 (319)
.+.+.. .+..+ ..+.+|.+|+.+.+..+ ++.. ....|.+|.+|+.+.+..+ ++.++.. .+..|++|+.+++
T Consensus 292 ~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I-~~~aF~~C~~L~~i~ip~s-v~~I~~~---aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 292 DIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQI-LDDAFAGCEQLERIAIPSS-VTKIPES---AFSNCTALNNIEY 364 (394)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEECTT-CCBCCGG---GGTTCTTCCEEEE
T ss_pred cccCCC-cccccCceeecCCCCcCEEEeCCc-ccEe-hHhHhhCCCCCCEEEECcc-cCEEhHh---HhhCCCCCCEEEE
Confidence 999864 45444 35888999999999764 4432 2256889999999999764 6666553 5789999999887
Q ss_pred cc
Q psy14728 317 TL 318 (319)
Q Consensus 317 ~~ 318 (319)
.+
T Consensus 365 ~~ 366 (394)
T 4gt6_A 365 SG 366 (394)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.88 E-value=3.4e-09 Score=92.38 Aligned_cols=95 Identities=23% Similarity=0.364 Sum_probs=41.8
Q ss_pred EccCC-cCcCccccCCCCCccEEEcCC-CCCcccc--CCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCc
Q psy14728 153 ELGDN-KIRIIENLDGLTNLEELYLGK-NKISRID--NLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLT 226 (319)
Q Consensus 153 ~l~~~-~~~~~~~l~~~~~L~~L~l~~-~~l~~~~--~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 226 (319)
+++++ .+..++.+..+++|+.|++++ |.+..++ .+..+++|+.|++++|+++.++ .+..+++|+.|++++|+++
T Consensus 14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 44443 443333344444555555543 4444442 2444455555555555444432 1344445555555555444
Q ss_pred Cccc--cCCCCCccEEEccCCCCC
Q psy14728 227 TIEN--LLSNEKLETLDVAYNKIS 248 (319)
Q Consensus 227 ~~~~--~~~~~~L~~L~l~~~~~~ 248 (319)
++|. +..++ |+.|++.+|.+.
T Consensus 94 ~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 94 SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eeCHHHcccCC-ceEEEeeCCCcc
Confidence 4432 22222 444444444443
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.75 E-value=2.4e-08 Score=83.11 Aligned_cols=85 Identities=15% Similarity=0.343 Sum_probs=69.8
Q ss_pred CCCCCccEEEccCCCCCCcccc----ccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcC----ChhhHHH
Q psy14728 232 LSNEKLETLDVAYNKISIIQNI----AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQ----DPNYRRK 303 (319)
Q Consensus 232 ~~~~~L~~L~l~~~~~~~~~~l----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~ 303 (319)
..+++|+.|++++|.++.++.+ ..+++|+.|+|++|++.++.....+..+ +|+.|++++|++.. .+.++..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4567899999999998876543 4789999999999999987555555555 99999999999985 3467778
Q ss_pred HHHhCCceEEEecc
Q psy14728 304 IKLVCPWIVQIDAT 317 (319)
Q Consensus 304 ~~~~~~~L~~l~~~ 317 (319)
++..+|+|+.||..
T Consensus 246 il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 246 IRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHCTTCCEESSC
T ss_pred HHHHCcccCeECCc
Confidence 89999999999864
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.67 E-value=1.3e-08 Score=78.92 Aligned_cols=101 Identities=12% Similarity=0.197 Sum_probs=78.8
Q ss_pred CCCCCeEeccCCcCcC--ccccCCCCCccEEEccCCC-CCC--cccccc----CCCCcEEEcCCCc-CCCCcccccccCC
Q psy14728 212 LTNLTQLYLSENGLTT--IENLLSNEKLETLDVAYNK-ISI--IQNIAH----LTELQEFWINDNQ-VSDWNTVNVLENN 281 (319)
Q Consensus 212 ~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~--~~~l~~----~~~L~~L~l~~n~-~~~~~~~~~~~~~ 281 (319)
...|+.|++++|.++. +..+..+++|++|++++|. ++. +..+.. +++|++|++++|. +++. ....+..+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~ 138 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHF 138 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGC
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcC
Confidence 3578999999998874 4568899999999999995 653 444555 3589999999994 8874 44667889
Q ss_pred CCCcEEEcCCCcCcCChh-hHHHHHHhCCceEE
Q psy14728 282 KQLQTIYLDRNPVAQDPN-YRRKIKLVCPWIVQ 313 (319)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~L~~ 313 (319)
++|+.|++++|+-.++.+ ....+....|+++.
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 999999999998776654 34567788998864
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.59 E-value=3.5e-08 Score=86.23 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=69.8
Q ss_pred CCCCCCccEEEccCCcccc----------c-CCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc--cCC
Q psy14728 121 LDHLANLEKLYLCSNKISK----------I-ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI--DNL 187 (319)
Q Consensus 121 ~~~l~~L~~L~l~~~~~~~----------~-~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~l 187 (319)
+..+++|+.|.+....... + +.+..+|+|+.|.++++.-..++.+ .+++|++|.+..+.+..- ..+
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHH
Confidence 4456788888776543211 1 1123456677777765521112222 256666666665554321 112
Q ss_pred --CCCCCCCEEECCCC--C------CCCCc-CC--cCCCCCCeEeccCCcCcCc-----cccCCCCCccEEEccCCCCCC
Q psy14728 188 --ASLTKLNILSLQCN--R------LRTIE-NL--EALTNLTQLYLSENGLTTI-----ENLLSNEKLETLDVAYNKISI 249 (319)
Q Consensus 188 --~~~~~L~~L~l~~~--~------~~~~~-~~--~~~~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~ 249 (319)
..+++|++|+++.+ . +..+. .+ ..+++|+.|++.+|.+... .....+++|++|++++|.++.
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 24566666655321 1 10110 11 2345555555555554421 111234555555555555543
Q ss_pred c------cccccCCCCcEEEcCCCcCCC
Q psy14728 250 I------QNIAHLTELQEFWINDNQVSD 271 (319)
Q Consensus 250 ~------~~l~~~~~L~~L~l~~n~~~~ 271 (319)
. ..+..+++|+.|++++|.+++
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 1 122344555555555555544
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.57 E-value=1.3e-05 Score=70.41 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=58.1
Q ss_pred CCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCCc
Q psy14728 187 LASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQ 260 (319)
Q Consensus 187 l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~ 260 (319)
+..+..|+.+.+..+ ++.+. .+..+.+|+.+.+..+ ++.++ .+..|.+|+.+.+.++.++.+ ..+.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 445555666555443 32221 2455666666666432 44343 266677777777776666654 3466777777
Q ss_pred EEEcCCCcCCCCcccccccCCCCCcEEEcCCC
Q psy14728 261 EFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292 (319)
Q Consensus 261 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 292 (319)
.+.+..+ ++.. ....|.+|++|+.+.+..+
T Consensus 314 ~i~lp~~-l~~I-~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 314 SVTLPTA-LKTI-QVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTT-CCEE-CTTTTTTCTTCCCCCCCTT
T ss_pred EEEcCcc-ccEE-HHHHhhCCCCCCEEEECCc
Confidence 7777643 3332 1245667777777777543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=6.8e-08 Score=76.26 Aligned_cols=113 Identities=20% Similarity=0.166 Sum_probs=81.2
Q ss_pred CCCCCCCCCEEECCCC-CCCCC------cCCcCCCCCCeEeccCCcCcCc------cccCCCCCccEEEccCCCCCC---
Q psy14728 186 NLASLTKLNILSLQCN-RLRTI------ENLEALTNLTQLYLSENGLTTI------ENLLSNEKLETLDVAYNKISI--- 249 (319)
Q Consensus 186 ~l~~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~--- 249 (319)
.+...+.|++|++++| .+..- ..+...++|++|++++|.+..- ..+...++|++|++++|.++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3566788899999888 77541 2356678888999998888742 225566788889998888874
Q ss_pred ---ccccccCCCCcEEEc--CCCcCCCCc---ccccccCCCCCcEEEcCCCcCcCCh
Q psy14728 250 ---IQNIAHLTELQEFWI--NDNQVSDWN---TVNVLENNKQLQTIYLDRNPVAQDP 298 (319)
Q Consensus 250 ---~~~l~~~~~L~~L~l--~~n~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~ 298 (319)
...+...++|++|++ ++|.+++.. ....+...+.|+.|++++|.+....
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 245677788888998 778887643 2244556688888888888876543
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.54 E-value=9.4e-08 Score=83.51 Aligned_cols=127 Identities=18% Similarity=0.198 Sum_probs=67.4
Q ss_pred CCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCccccc--CCC--CCCCCccEEEccCC--c------CcCc-ccc-
Q psy14728 100 DTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI--ENV--DHLKKLKVLELGDN--K------IRII-ENL- 165 (319)
Q Consensus 100 ~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~--~~~--~~~~~L~~L~l~~~--~------~~~~-~~l- 165 (319)
..+++|+.|+++++.-..++.+. +++|+.|.+..+.++.- ..+ ..+|+|+.|+++.+ . +..+ +.+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred hcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 34455666666555212223322 55666666655554321 111 24566666665321 1 1001 111
Q ss_pred -CCCCCccEEEcCCCCCccc-----cCCCCCCCCCEEECCCCCCCCC-----c-CCcCCCCCCeEeccCCcCcC
Q psy14728 166 -DGLTNLEELYLGKNKISRI-----DNLASLTKLNILSLQCNRLRTI-----E-NLEALTNLTQLYLSENGLTT 227 (319)
Q Consensus 166 -~~~~~L~~L~l~~~~l~~~-----~~l~~~~~L~~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~~~ 227 (319)
..+++|+.|++.+|.+.+. .....+++|++|+++.|.+... . .+..+++|+.|++++|.++.
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 2467777777777765531 1123467788888887777541 1 23456788888888887764
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=3.5e-08 Score=77.95 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=55.2
Q ss_pred CcCCCCCCeEeccCC-cCcCc------cccCCCCCccEEEccCCCCCCc------cccccCCCCcEEEcCCCcCCCCcc-
Q psy14728 209 LEALTNLTQLYLSEN-GLTTI------ENLLSNEKLETLDVAYNKISII------QNIAHLTELQEFWINDNQVSDWNT- 274 (319)
Q Consensus 209 ~~~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~n~~~~~~~- 274 (319)
+...++|++|++++| .+..- ..+...++|++|++++|.+..- ..+...++|++|++++|.+++...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344555666666665 55421 1244455566666666655421 223444556666666666554221
Q ss_pred --cccccCCCCCcEEEc--CCCcCcCChh-hHHHHHHhCCceEEEecccC
Q psy14728 275 --VNVLENNKQLQTIYL--DRNPVAQDPN-YRRKIKLVCPWIVQIDATLA 319 (319)
Q Consensus 275 --~~~~~~~~~L~~L~l--~~n~~~~~~~-~~~~~~~~~~~L~~l~~~~C 319 (319)
...+...+.|+.|++ ++|.+..... .....+..++.|+.|++++|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 133344555666666 5555554322 11233445556666665543
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=1.1e-07 Score=73.73 Aligned_cols=82 Identities=10% Similarity=0.029 Sum_probs=66.3
Q ss_pred CCccEEEccCCCCCC--ccccccCCCCcEEEcCCCc-CCCCcccccccCC----CCCcEEEcCCCcCcCChhhHHHHHHh
Q psy14728 235 EKLETLDVAYNKISI--IQNIAHLTELQEFWINDNQ-VSDWNTVNVLENN----KQLQTIYLDRNPVAQDPNYRRKIKLV 307 (319)
Q Consensus 235 ~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~----~~L~~L~l~~n~~~~~~~~~~~~~~~ 307 (319)
..|++|++++|.++. +..+.++++|++|++++|. +++. ....+..+ ++|+.|++++|+-.++.++ ..+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGI--IALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHH--HHGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHH--HHHhc
Confidence 579999999999864 5678899999999999995 7774 44555553 5899999999985555554 23568
Q ss_pred CCceEEEecccC
Q psy14728 308 CPWIVQIDATLA 319 (319)
Q Consensus 308 ~~~L~~l~~~~C 319 (319)
|++|+.|++++|
T Consensus 138 ~~~L~~L~L~~c 149 (176)
T 3e4g_A 138 FRNLKYLFLSDL 149 (176)
T ss_dssp CTTCCEEEEESC
T ss_pred CCCCCEEECCCC
Confidence 999999999998
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=1.1e-06 Score=72.94 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=52.9
Q ss_pred CCCCCCeEeccCCcCcCcccc----CCCCCccEEEccCCCCCCccccccCC--CCcEEEcCCCcCCCCc------ccccc
Q psy14728 211 ALTNLTQLYLSENGLTTIENL----LSNEKLETLDVAYNKISIIQNIAHLT--ELQEFWINDNQVSDWN------TVNVL 278 (319)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~------~~~~~ 278 (319)
.+++|++|++++|++++++.+ ..+++|+.|+|++|.++.+..+..+. +|++|++++|.+.+.. ....+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 466777777777777765433 36778888888888887765444444 7888888888876411 01345
Q ss_pred cCCCCCcEEE
Q psy14728 279 ENNKQLQTIY 288 (319)
Q Consensus 279 ~~~~~L~~L~ 288 (319)
..+|+|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 6788888765
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.20 E-value=0.00042 Score=60.69 Aligned_cols=123 Identities=13% Similarity=0.194 Sum_probs=87.6
Q ss_pred CCCCCCCCCEEECCCCCCCCC--cCCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCC
Q psy14728 186 NLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTEL 259 (319)
Q Consensus 186 ~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L 259 (319)
.+..+..++.+.+..+ +..+ ..+..+..|+.+.+..+ ++.++ .+..+.+|+.+.+..+ +..+ ..+.+|.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3555667777776543 2222 23667888888888664 55554 3778889999998654 4433 358899999
Q ss_pred cEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEec
Q psy14728 260 QEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDA 316 (319)
Q Consensus 260 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~ 316 (319)
+.+.+.++.++..+ ...|.+|.+|+.+.+..+ ++.++. ..+..|++|+.+.+
T Consensus 289 ~~i~l~~~~i~~I~-~~aF~~c~~L~~i~lp~~-l~~I~~---~aF~~C~~L~~i~i 340 (379)
T 4h09_A 289 TKVVMDNSAIETLE-PRVFMDCVKLSSVTLPTA-LKTIQV---YAFKNCKALSTISY 340 (379)
T ss_dssp CEEEECCTTCCEEC-TTTTTTCTTCCEEECCTT-CCEECT---TTTTTCTTCCCCCC
T ss_pred ccccccccccceeh-hhhhcCCCCCCEEEcCcc-ccEEHH---HHhhCCCCCCEEEE
Confidence 99999988877643 367899999999999764 555554 35788999988765
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.67 E-value=0.00019 Score=52.66 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=44.6
Q ss_pred EEEccCCCCC--CccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHH
Q psy14728 239 TLDVAYNKIS--IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKI 304 (319)
Q Consensus 239 ~L~l~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 304 (319)
.++.+++.++ .++. .-.++|++|+|++|+++.++. ..|..+++|+.|+|.+|++.+++...+..
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC~l~~l~ 77 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDCRLVPLR 77 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSGGGHHHH
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccCccHHHH
Confidence 5666666665 5542 123468888888888887543 56777888888888888888888765543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.35 E-value=0.00039 Score=54.73 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=65.2
Q ss_pred CCCCCCCCEEECCCC-CCCC--C----cCCcCCCCCCeEeccCCcCcCc-----c-ccCCCCCccEEEccCCCCCCc---
Q psy14728 187 LASLTKLNILSLQCN-RLRT--I----ENLEALTNLTQLYLSENGLTTI-----E-NLLSNEKLETLDVAYNKISII--- 250 (319)
Q Consensus 187 l~~~~~L~~L~l~~~-~~~~--~----~~~~~~~~L~~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~~~~--- 250 (319)
+..-+.|++|+++++ ++.. . ..+..-+.|+.|++++|++... . .+...+.|++|+|++|.++.-
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567778888774 5543 1 2245567777788877777642 1 244556777777777777631
Q ss_pred ---cccccCCCCcEEEcCCC---cCCCC---cccccccCCCCCcEEEcCCCcC
Q psy14728 251 ---QNIAHLTELQEFWINDN---QVSDW---NTVNVLENNKQLQTIYLDRNPV 294 (319)
Q Consensus 251 ---~~l~~~~~L~~L~l~~n---~~~~~---~~~~~~~~~~~L~~L~l~~n~~ 294 (319)
+.+.....|++|+++++ .+++. .+.+.+...+.|..|+++.|..
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34555666777777754 33431 1224455567777777776643
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.86 E-value=0.00047 Score=54.22 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=27.5
Q ss_pred cCCCCCccEEEccCCCCCCc------cccccCCCCcEEEcCCCcCCCCccc---ccccCCCCCcEEEcCCC
Q psy14728 231 LLSNEKLETLDVAYNKISII------QNIAHLTELQEFWINDNQVSDWNTV---NVLENNKQLQTIYLDRN 292 (319)
Q Consensus 231 ~~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n 292 (319)
+.....|+.|+|++|.+... +.+...+.|+.|+|++|.|++.... +.+...+.|+.|++++|
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 33444555555555555421 1233444555555555555442211 22233344555555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.27 E-value=0.011 Score=43.11 Aligned_cols=53 Identities=15% Similarity=0.163 Sum_probs=26.7
Q ss_pred eEeccCCcCc--CccccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCC
Q psy14728 217 QLYLSENGLT--TIENLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVS 270 (319)
Q Consensus 217 ~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~ 270 (319)
.++.++++++ .+|. .-.+++++|+|++|.++.++ .+..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4455555554 4442 11234555555555555543 2455555666666666543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.27 E-value=29 Score=23.37 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=5.1
Q ss_pred cccCCCCCEEEc
Q psy14728 77 IHMLTTLKELEL 88 (319)
Q Consensus 77 ~~~~~~L~~L~l 88 (319)
|.+|.+|+.+.|
T Consensus 16 F~~c~~L~~i~i 27 (100)
T 2lz0_A 16 FAGNTVIREITV 27 (100)
T ss_dssp TTTCTTCCCEEE
T ss_pred hcCCCCCcEEEc
Confidence 334444444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.64 E-value=27 Score=23.47 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=27.4
Q ss_pred cCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCC
Q psy14728 224 GLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDN 267 (319)
Q Consensus 224 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n 267 (319)
.++.+. .+.+|.+|+++.+-.+ ++.+ ..|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 445553 2677777777777654 3333 34777777777777764
Done!