RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14728
(319 letters)
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 61.9 bits (150), Expect = 1e-10
Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 8/224 (3%)
Query: 72 KKIENIHMLTTLKELELYDNQLTV-IENLDTLINLEILDLSFNRIREIKGLDHL--ANLE 128
EN+ L L L+L N+L I L L NL LDL N I +I L L +NL+
Sbjct: 84 DGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143
Query: 129 KLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRIIENLDG-LTNLEELYLGKNKISRIDN 186
+L L NKI + + +L LK L+L N + + L L+NL L L NKIS +
Sbjct: 144 ELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP 203
Query: 187 LAS-LTKLNILSLQCNR-LRTIENLEALTNLTQLYLSENGLTTIENLLSNEK-LETLDVA 243
L+ L L L N + + +L L NL+ L LS N L + + N LETLD++
Sbjct: 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263
Query: 244 YNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTI 287
N+IS I ++ LT L+E ++ N +S+ + L +
Sbjct: 264 NNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307
Score = 59.6 bits (144), Expect = 5e-10
Identities = 70/220 (31%), Positives = 104/220 (47%), Gaps = 6/220 (2%)
Query: 80 LTTLKELELYDNQLTVIENLDT-LINLEILDLSFNRIREIKGL-DHLANLEKLYLCSNKI 137
L LK L+L N L+ + L + L NL LDLS N+I ++ + L+ LE+L L +N I
Sbjct: 162 LPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI 221
Query: 138 SK-IENVDHLKKLKVLELGDNKIR-IIENLDGLTNLEELYLGKNKISRIDNLASLTKLNI 195
+ + ++ +LK L LEL +NK+ + E++ L+NLE L L N+IS I +L SLT L
Sbjct: 222 IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRE 281
Query: 196 LSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDV--AYNKISIIQNI 253
L L N L L AL L L LT L + + + + S + +
Sbjct: 282 LDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEAL 341
Query: 254 AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
+ L L W DN + + N + N LD
Sbjct: 342 SILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVK 381
Score = 55.0 bits (132), Expect = 2e-08
Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 11/224 (4%)
Query: 93 LTVIENLDTLINLEILDLSFNRIRE-IKGLDHLANLEKLYLCSNKISKIENVDHL--KKL 149
L ENL L+ L LDL+ NR+R I L L NL L L +N I+ I + L L
Sbjct: 83 LDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNL 142
Query: 150 KVLELGDNKIR-IIENLDGLTNLEELYLGKNKISRIDNLAS-LTKLNILSLQCNRLRTIE 207
K L+L DNKI + L L NL+ L L N +S + L S L+ LN L L N++ +
Sbjct: 143 KELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP 202
Query: 208 NL-EALTNLTQLYLSENGLTTIENLLSNEK-LETLDVAYNKI-SIIQNIAHLTELQEFWI 264
E L+ L +L LS N + + + LSN K L L+++ NK+ + ++I +L+ L+ +
Sbjct: 203 PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL 262
Query: 265 NDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVC 308
++NQ+S +++ L N L+ + L N ++ + L+
Sbjct: 263 SNNQISSISSLGSLTN---LRELDLSGNSLSNALPLIALLLLLL 303
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 49.5 bits (118), Expect = 1e-06
Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 102 LINLEILDLSFNRIR-EI-KGLDHLANLEKLYLCSNKIS-KIEN-VDHLKKLKVLELGDN 157
L +L LDL +N + I L +L NL+ L+L NK+S I + L+KL L+L DN
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294
Query: 158 KI--RIIENLDGLTNLEELYLGKNKIS-RI-DNLASLTKLNILSLQCNRL--RTIENLEA 211
+ I E + L NLE L+L N + +I L SL +L +L L N+ +NL
Sbjct: 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354
Query: 212 LTNLTQLYLSENGLT 226
NLT L LS N LT
Sbjct: 355 HNNLTVLDLSTNNLT 369
Score = 41.4 bits (97), Expect = 5e-04
Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 39/230 (16%)
Query: 80 LTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRI--REIKGLDHLANLEKLYLCSN 135
L L+ L+L+ N+ + + +NL NL +LDLS N + +GL NL KL L SN
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390
Query: 136 KI-SKI-ENVDHLKKLKVLELGDN-----------KIRIIENLD---------------G 167
+ +I +++ + L+ + L DN K+ ++ LD
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450
Query: 168 LTNLEELYLGKNKIS-RIDNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENG 224
+ +L+ L L +NK + + +L L L N+ L +L+ L QL LSEN
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510
Query: 225 LTTI--ENLLSNEKLETLDVAYNKIS--IIQNIAHLTELQEFWINDNQVS 270
L+ + L S +KL +LD+++N++S I + + + L + ++ NQ+S
Sbjct: 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560
Score = 38.7 bits (90), Expect = 0.004
Identities = 69/208 (33%), Positives = 102/208 (49%), Gaps = 22/208 (10%)
Query: 60 CIERLLLRWNLIK-KIEN-IHMLTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRI 115
+E L L N++ +I N I ++LK L+L N L + +L L +LE L L+ N++
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200
Query: 116 -----REIKGLDHLANLEKLYLCSNKIS-KIEN-VDHLKKLKVLELGDNKI--RIIENLD 166
RE L + +L+ +YL N +S +I + L L L+L N + I +L
Sbjct: 201 VGQIPRE---LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257
Query: 167 GLTNLEELYLGKNKIS-RIDN-LASLTKLNILSLQCNRL--RTIENLEALTNLTQLYLSE 222
L NL+ L+L +NK+S I + SL KL L L N L E + L NL L+L
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317
Query: 223 NGLT-TI-ENLLSNEKLETLDVAYNKIS 248
N T I L S +L+ L + NK S
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFS 345
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 41.4 bits (98), Expect = 2e-05
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 126 NLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKI 181
NL+ L L +N+++ I + L LKVL+L N + I GL +L L L N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 39.1 bits (92), Expect = 1e-04
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 104 NLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKI 159
NL+ LDLS NR+ I L NL+ L L N ++ I L L+ L+L N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 39.1 bits (92), Expect = 1e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 148 KLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRL 203
LK L+L +N++ +I + GL NL+ L L N ++ I + L L L L N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 37.1 bits (87), Expect = 6e-04
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 170 NLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGL 225
NL+ L L N+++ I + L L +L L N L +I L +L L LS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 36.0 bits (84), Expect = 0.002
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 83 LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNKI 137
LK L+L +N+LTVI + L NL++LDLS N + I + L +L L L N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 34.1 bits (79), Expect = 0.008
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 192 KLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE-NLLSN-EKLETLDVAYNKI 247
L L L NRL I + + L NL L LS N LT+I S L +LD++ N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 29.8 bits (68), Expect = 0.26
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRI 115
++ L L N + I + L LK L+L N LT I L +L LDLS N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 27.1 bits (61), Expect = 2.1
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 214 NLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQ 268
NL L LS N LT I + L+ LD++ N ++ I + L L+ ++ N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 147 KKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLAS 189
L+ L+L +N+I + L L NLE L L NKI+ + L++
Sbjct: 1 TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 104 NLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDH 145
NLE LDLS N+I ++ L +L NLE L L NKI+ + + +
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43
Score = 39.4 bits (93), Expect = 6e-05
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 169 TNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLE 210
TNLE L L N+I+ + L++L L L L N++ + L
Sbjct: 1 TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLS 42
Score = 39.0 bits (92), Expect = 8e-05
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
T L+ L+L +NQ+T + L L NLE LDLS N+I ++ L +
Sbjct: 1 TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43
Score = 38.6 bits (91), Expect = 1e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAH 255
TNL L LS N +T + L + LETLD++ NKI+ + +++
Sbjct: 1 TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43
Score = 38.2 bits (90), Expect = 1e-04
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 126 NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENL 165
NLE L L +N+I+ + + +L L+ L+L NKI + L
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPL 41
Score = 36.3 bits (85), Expect = 8e-04
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENL 231
T L L L N++ + L L NL L LS N +T + L
Sbjct: 1 TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPL 41
Score = 31.7 bits (73), Expect = 0.029
Identities = 11/41 (26%), Positives = 28/41 (68%)
Query: 236 KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVN 276
LETLD++ N+I+ + +++L L+ ++ N+++D + ++
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLS 42
Score = 30.5 bits (70), Expect = 0.082
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENL 99
+E L L N I + + L L+ L+L N++T + L
Sbjct: 3 LETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPL 41
Score = 25.5 bits (57), Expect = 5.8
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 257 TELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
T L+ +++NQ++D + L N L+T+ L N +
Sbjct: 1 TNLETLDLSNNQITD---LPPLSNLPNLETLDLSGNKI 35
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 39.3 bits (92), Expect = 0.002
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 35/190 (18%)
Query: 141 ENVDHLKKLKVLELGDNKIRII--------ENLDGLTNLEELYLGKNKIS-----RIDNL 187
+ LK L L N+ I + L L+EL L N + +++L
Sbjct: 45 SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104
Query: 188 ASLTKLNILSLQCNRL-RTIENL--EALT----NLTQLYLSENGLT------TIENLLSN 234
+ L L L N L L + L L +L L N L + L +N
Sbjct: 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164
Query: 235 EKLETLDVAYNKI------SIIQNIAHLTELQEFWINDNQVSDWNTV---NVLENNKQLQ 285
L+ L++A N I ++ + + L+ +N+N ++D L + K L+
Sbjct: 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224
Query: 286 TIYLDRNPVA 295
+ L N +
Sbjct: 225 VLNLGDNNLT 234
Score = 33.5 bits (77), Expect = 0.12
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 105 LEILDLSFNRIRE------IKGLDHLANLEKLYLCSNKISKIENVD------HLKKLKVL 152
L+ L+L+ N I + +GL NLE L L +N ++ LK L+VL
Sbjct: 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226
Query: 153 ELGDNKIR 160
LGDN +
Sbjct: 227 NLGDNNLT 234
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 38.3 bits (89), Expect = 0.005
Identities = 65/264 (24%), Positives = 99/264 (37%), Gaps = 76/264 (28%)
Query: 71 IKKIENIHMLTTLKEL-------------------ELYDNQLTVIENLDTL---INLE-- 106
+K+I ++ M T L+ L +L D ++ ENL+ L INL+
Sbjct: 647 LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL 706
Query: 107 ----------------------ILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVD 144
LDL I E L NL++L LC K K+
Sbjct: 707 YRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERV 766
Query: 145 HLK---------KLKVLELGDNK--IRIIENLDGLTNLEELYLGKNKISRIDNLASL-TK 192
L L L D + + ++ L LE L +I NL +L T
Sbjct: 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL-----EIENCINLETLPTG 821
Query: 193 LNILSLQ------CNRLRTIENLEALTNLTQLYLSENGLTT----IENLLSNEKLETLDV 242
+N+ SL+ C+RLRT ++ TN++ L LS G+ IE SN ++
Sbjct: 822 INLESLESLDLSGCSRLRTFPDIS--TNISDLNLSRTGIEEVPWWIEK-FSNLSFLDMNG 878
Query: 243 AYNKISIIQNIAHLTELQEFWIND 266
N + NI+ L L+ +D
Sbjct: 879 CNNLQRVSLNISKLKHLETVDFSD 902
>gnl|CDD|197684 smart00365, LRR_SD22, Leucine-rich repeat, SDS22-like subfamily.
Length = 22
Score = 32.2 bits (75), Expect = 0.013
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 146 LKKLKVLELGDNKIRIIENLDG 167
L L+ L+LGDNKI+ IENLD
Sbjct: 1 LTNLEELDLGDNKIKKIENLDE 22
Score = 29.5 bits (68), Expect = 0.15
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 168 LTNLEELYLGKNKISRIDNL 187
LTNLEEL LG NKI +I+NL
Sbjct: 1 LTNLEELDLGDNKIKKIENL 20
Score = 29.2 bits (67), Expect = 0.21
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 124 LANLEKLYLCSNKISKIENVDH 145
L NLE+L L NKI KIEN+D
Sbjct: 1 LTNLEELDLGDNKIKKIENLDE 22
Score = 28.8 bits (66), Expect = 0.27
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 80 LTTLKELELYDNQLTVIENLDT 101
LT L+EL+L DN++ IENLD
Sbjct: 1 LTNLEELDLGDNKIKKIENLDE 22
Score = 26.5 bits (60), Expect = 1.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 104 NLEILDLSFNRIREIKGLDH 123
NLE LDL N+I++I+ LD
Sbjct: 3 NLEELDLGDNKIKKIENLDE 22
Score = 25.7 bits (58), Expect = 3.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 212 LTNLTQLYLSENGLTTIENL 231
LTNL +L L +N + IENL
Sbjct: 1 LTNLEELDLGDNKIKKIENL 20
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 34.0 bits (78), Expect = 0.094
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 135 NKISKIENVDHLKKLKVLELGDNKIR--IIENLDGLTNLEELYLGKNKISRI--DNLASL 190
N ISK L+ L+ + L N IR I +L +T+LE L L N + ++L L
Sbjct: 436 NDISK------LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 191 TKLNILSLQCNRL 203
T L IL+L N L
Sbjct: 490 TSLRILNLNGNSL 502
Score = 30.2 bits (68), Expect = 1.5
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 76 NIHMLTTLKELELYDNQL--TVIENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLY 131
+I L L+ + L N + + +L ++ +LE+LDLS+N + L L +L L
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496
Query: 132 LCSNKIS 138
L N +S
Sbjct: 497 LNGNSLS 503
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 26.9 bits (61), Expect = 1.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 102 LINLEILDLSFNRIREI 118
L NL LDLS N++ +
Sbjct: 1 LPNLRELDLSNNQLSSL 17
Score = 24.2 bits (54), Expect = 9.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 168 LTNLEELYLGKNKISRI 184
L NL EL L N++S +
Sbjct: 1 LPNLRELDLSNNQLSSL 17
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 26.9 bits (61), Expect = 1.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 102 LINLEILDLSFNRIREI 118
L NL LDLS N++ +
Sbjct: 1 LPNLRELDLSNNQLSSL 17
Score = 24.2 bits (54), Expect = 9.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 168 LTNLEELYLGKNKISRI 184
L NL EL L N++S +
Sbjct: 1 LPNLRELDLSNNQLSSL 17
>gnl|CDD|114908 pfam06216, RTBV_P46, Rice tungro bacilliform virus P46 protein.
This family consists of several Rice tungro bacilliform
virus P46 proteins. The function of this family is
unknown.
Length = 392
Score = 29.6 bits (66), Expect = 2.2
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 32/154 (20%)
Query: 114 RIREIKGL-DHLANLE-KLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRIIENLDGLTN 170
R+R++ + DH+ E ++ + K+ + V HLKK + + K +I E D +
Sbjct: 55 RVRKLHIIADHIYLKEFEIESYKLECEKLNDQVSHLKK----QNEELKAQIAEMKDIIEG 110
Query: 171 LEE-----LYLGKNK-------------------ISRIDNLASLTKLNILSLQCNRLRTI 206
L E +Y ++K I R+ + + LN L C R
Sbjct: 111 LREPLKKPIYTTQDKEALRNFFCEERSMEYIYHHIKRLAQESYYSHLNKLQKDCEFFRGF 170
Query: 207 ENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
L LTN+ L L E GL T E++ + E+L
Sbjct: 171 Y-LSFLTNVKFLVLCEAGLWTTEDIEDHFFNESL 203
>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 316
Score = 29.5 bits (66), Expect = 2.2
Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 73 KIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFN---RIREIKGLDHLANLEK 129
+E+I + +T + D ++ I N L +++ S R+ G+ + ++LEK
Sbjct: 163 TVEDIGLRSTT--IRTLDGRIVTIPN-SKLFTANVVNYSREPGRRVEVKVGVAYDSDLEK 219
Query: 130 ----LYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKI 181
L ++ ++ ++ + V ELGD+ I I + TN E+L+ + ++
Sbjct: 220 ALKILKEVLEELPEVLKIEPEPVIGVSELGDSGINIR--VRFWTNPEDLWSVQREL 273
>gnl|CDD|239066 cd02153, tRNA_bindingDomain, The tRNA binding domain is also known
as the Myf domain in literature. This domain is found in
a diverse collection of tRNA binding proteins, including
prokaryotic phenylalanyl tRNA synthetases (PheRS),
methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA
synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p,
Thermus thermophilus CsaA, Aquifex aeolicus Trbp111,
human p43 and human EMAP-II. PheRS, MetRS and hTyrRS
aminoacylate their cognate tRNAs. Arc1p is a
transactivator of yeast methionyl-tRNA and glutamyl-tRNA
synthetases. The molecular chaperones Trbp111 and CsaA
also contain this domain. CsaA has export related
activities; Trbp111 is structure-specific recognizing
the L-shape of the tRNA fold. This domain has general
tRNA binding properties. In a subset of this family
this domain has the added capability of a cytokine. For
example the p43 component of the Human aminoacyl-tRNA
synthetase complex is cleaved to release EMAP-II
cytokine. EMAP-II has multiple activities during
apoptosis, angiogenesis and inflammation and
participates in malignant transformation. An
EMAP-II-like cytokine is released from hTyrRS upon
cleavage. The active cytokine heptapeptide locates to
this domain. For homodimeric members of this group which
include CsaA, Trbp111 and Escherichia coli MetRS this
domain acts as a dimerization domain.
Length = 99
Score = 27.9 bits (63), Expect = 2.8
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 136 KISKIENVDHLKKLKVLELGDNKIRII 162
+ N D L LKV ++G+ K R I
Sbjct: 8 EAEPHPNADKLYVLKV-DIGEEKPRQI 33
>gnl|CDD|221891 pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This
is a leucine-zipper-like or homeodomain-like region of
transposase TnpC of insertion element IS66.
Length = 77
Score = 26.9 bits (60), Expect = 3.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 29 HGNQMSLDNPDEESEAETTESKAEDEESKEV 59
Q+SL + E++A E++AE + E
Sbjct: 24 AREQLSLFLEELEADAAALEAEAEAAAAPEQ 54
>gnl|CDD|217494 pfam03325, Herpes_PAP, Herpesvirus polymerase accessory protein.
The same proteins are also known as polymerase
processivity factors.
Length = 268
Score = 28.3 bits (63), Expect = 5.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNK 246
+L+ + L C LR + + E ++ S+NGL T+EN L+ E + D + +
Sbjct: 114 ALSNCAVTKLSCT-LRVVTDHETKLYVS----SKNGLFTVENFLTEEPFQRGDPRFER 166
>gnl|CDD|227478 COG5149, TOA1, Transcription initiation factor IIA, large chain
[Transcription].
Length = 293
Score = 28.5 bits (63), Expect = 5.3
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 8 NTDEVDNDNLVTLNVEAVENTHGNQMSLDNPDEESEAETTESKA 51
D ++ T N++ + +SL N E+ E E + K+
Sbjct: 120 TADSPIINDHSTANLKIYGDIIAEVISLPNRLEQVEDELSIGKS 163
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 28.7 bits (64), Expect = 5.4
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 2 DVETVPNTDEVDN-DNLVTLNVEAVENTHGNQMSLDNPDEESEAETTESKAEDEESKE 58
DVET T E D+ DN +NVE VE T + + TT E E+ E
Sbjct: 684 DVETGNYTVEADDGDNTDRVNVEVVEETERPDTTTSEDPTTTTTPTTTGPEETTETAE 741
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 28.3 bits (63), Expect = 6.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 67 RWNLIKKIENIHML 80
RW L++K+ N+HML
Sbjct: 123 RWKLLRKLSNLHML 136
>gnl|CDD|234067 TIGR02943, Sig70_famx1, RNA polymerase sigma-70 factor, TIGR02943
family. This group of sigma factors are members of the
sigma-70 family (TIGR02937). They and appear by
homology, tree building, bidirectional best hits and
one-to-a-genome distribution, to represent a conserved
family.
Length = 188
Score = 27.4 bits (61), Expect = 9.1
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 12/71 (16%)
Query: 229 ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIY 288
E +S+ E D A+N A T+ W Q WNT NK+ ++
Sbjct: 75 EVKVSDLDDELDDEAFN--------ALFTQNGH-WAQHGQPQHWNTPEKQLENKEFWEVF 125
Query: 289 ---LDRNPVAQ 296
L P
Sbjct: 126 EACLYHLPEQT 136
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.132 0.363
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,817,768
Number of extensions: 1545121
Number of successful extensions: 1386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1311
Number of HSP's successfully gapped: 107
Length of query: 319
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 222
Effective length of database: 6,635,264
Effective search space: 1473028608
Effective search space used: 1473028608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.2 bits)