RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14728
(319 letters)
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 214 bits (548), Expect = 8e-68
Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 2/235 (0%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNR-IREIK 119
+ L + N I I + LT L+EL L ++ ++ I L L + L+L N + ++
Sbjct: 90 LTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS 149
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
L ++ L L + +K+ + + +L L L L N+I I L LT+L N
Sbjct: 150 PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN 209
Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
+I+ I +A++T+LN L + N++ + L L+ LT L + N ++ I + KL+
Sbjct: 210 QITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKM 269
Query: 240 LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
L+V N+IS I + +L++L ++N+NQ+ + + + V+ L T++L +N +
Sbjct: 270 LNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQNHI 323
Score = 179 bits (457), Expect = 3e-54
Identities = 66/233 (28%), Positives = 122/233 (52%), Gaps = 4/233 (1%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
R +L+ + + L ++ +L + ++ I+ ++ L NLE L+L+ N+I +I
Sbjct: 24 GIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP 83
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN- 179
L +L L LY+ +NKI+ I + +L L+ L L ++ I I L LT + L LG N
Sbjct: 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANH 143
Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
+S + L+++T LN L++ ++++ + + LT+L L L+ N + I L S L
Sbjct: 144 NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHY 203
Query: 240 LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
N+I+ I +A++T L I +N+++D ++ L N QL + + N
Sbjct: 204 FTAYVNQITDITPVANMTRLNSLKIGNNKITD---LSPLANLSQLTWLEIGTN 253
Score = 174 bits (444), Expect = 2e-52
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 4/230 (1%)
Query: 64 LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
L I +I L L +T + + L ++ L ++ ++ I+G+++
Sbjct: 5 LATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEY 64
Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
L NLE L L N+I+ I + +L KL L +G NKI I L LTNL ELYL ++ IS
Sbjct: 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD 124
Query: 184 IDNLASLTKLNILSLQCNRLRT-IENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDV 242
I LA+LTK+ L+L N + + L +T L L ++E+ + + + + L +L +
Sbjct: 125 ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSL 184
Query: 243 AYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
YN+I I +A LT L F NQ++D + + N +L ++ + N
Sbjct: 185 NYNQIEDISPLASLTSLHYFTAYVNQITD---ITPVANMTRLNSLKIGNN 231
Score = 174 bits (443), Expect = 3e-52
Identities = 55/204 (26%), Positives = 106/204 (51%), Gaps = 2/204 (0%)
Query: 69 NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
+ + + + +T L L + ++++ + + L +L L L++N+I +I L L +L
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLH 202
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA 188
N+I+ I V ++ +L L++G+NKI + L L+ L L +G N+IS I+ +
Sbjct: 203 YFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVK 262
Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI--ENLLSNEKLETLDVAYNK 246
LTKL +L++ N++ I L L+ L L+L+ N L E + L TL ++ N
Sbjct: 263 DLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322
Query: 247 ISIIQNIAHLTELQEFWINDNQVS 270
I+ I+ +A L+++ + +
Sbjct: 323 ITDIRPLASLSKMDSADFANQVIK 346
Score = 159 bits (404), Expect = 2e-46
Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 4/211 (1%)
Query: 83 LKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIEN 142
L + I L L + ++ + L ++ KL + K++ I+
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
+++L L+ L L N+I I L L L LY+G NKI+ I L +LT L L L +
Sbjct: 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDN 121
Query: 203 LRTIENLEALTNLTQLYLSENGLTT-IENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
+ I L LT + L L N + + L + L L V +K+ + IA+LT+L
Sbjct: 122 ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYS 181
Query: 262 FWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+N NQ+ D ++ L + L N
Sbjct: 182 LSLNYNQIED---ISPLASLTSLHYFTAYVN 209
Score = 156 bits (397), Expect = 2e-45
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 2/189 (1%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL 121
L + + +K + I LT L L L NQ+ I L +L +L N+I +I +
Sbjct: 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPV 217
Query: 122 DHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKI 181
++ L L + +NKI+ + + +L +L LE+G N+I I + LT L+ L +G N+I
Sbjct: 218 ANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI 277
Query: 182 SRIDNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
S I L +L++LN L L N+L E + LTNLT L+LS+N +T I L S K+++
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDS 337
Query: 240 LDVAYNKIS 248
D A I
Sbjct: 338 ADFANQVIK 346
Score = 104 bits (263), Expect = 4e-26
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Query: 149 LKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN 208
L I I L L K ++ + L + L + ++ +I+
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61
Query: 209 LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQ 268
+E LTNL L L+ N +T I L + KL L + NKI+ I + +LT L+E ++N++
Sbjct: 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDN 121
Query: 269 VSDWNTVNVLENNKQLQTIYLDRNPVAQDP 298
+SD ++ L N ++ ++ L N D
Sbjct: 122 ISD---ISPLANLTKMYSLNLGANHNLSDL 148
Score = 98.8 bits (247), Expect = 8e-24
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ L + N I + + L+ L LE+ NQ++ I + L L++L++ N+I +I
Sbjct: 223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV 282
Query: 121 LDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGK 178
L++L+ L L+L +N++ E + L L L L N I I L L+ ++
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFAN 342
Query: 179 NKISR 183
I +
Sbjct: 343 QVIKK 347
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 198 bits (503), Expect = 9e-59
Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 3/236 (1%)
Query: 83 LKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIEN 142
+ E + I D +L + + + L +++++ ++ I ++
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
+ +L + L L NK+ I+ L L NL L+L +NKI + +L L KL LSL+ N
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG 120
Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
+ I L L L LYL N +T I L KL+TL + N+IS I +A LT+LQ
Sbjct: 121 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 180
Query: 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL 318
+++ N +SD + L K L + L P + +V + D +L
Sbjct: 181 YLSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233
Score = 186 bits (472), Expect = 2e-54
Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 2/230 (0%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ L+ + + L ++ ++ ++ + ++ + L N+ L L+ N++ +IK
Sbjct: 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP 82
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L +L NL L+L NKI + ++ LKKLK L L N I I L L LE LYLG NK
Sbjct: 83 LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK 142
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
I+ I L+ LTKL+ LSL+ N++ I L LT L LYLS+N ++ + L + L+ L
Sbjct: 143 ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 202
Query: 241 DVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIY 288
++ + + ++L D + ++ + ++ +
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 252
Score = 179 bits (454), Expect = 7e-52
Identities = 61/226 (26%), Positives = 107/226 (47%), Gaps = 1/226 (0%)
Query: 64 LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
+ IK+I + L +T + L +++ + + + I+ ++G+ +
Sbjct: 4 TITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY 63
Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
L N+ KL+L NK++ I+ + +LK L L L +NKI+ + +L L L+ L L N IS
Sbjct: 64 LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 123
Query: 184 IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVA 243
I+ L L +L L L N++ I L LT L L L +N ++ I L KL+ L ++
Sbjct: 124 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183
Query: 244 YNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYL 289
N IS ++ +A L L + + + +N N T+
Sbjct: 184 KNHISDLRALAGLKNLDVLELFSQECLN-KPINHQSNLVVPNTVKN 228
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 182 bits (464), Expect = 9e-56
Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 3/250 (1%)
Query: 69 NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
I I L ++ + +T L + L + I+G+ +L NL
Sbjct: 7 TAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLI 66
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA 188
L L N+I+ + + +L K+ LEL N ++ + + GL +++ L L +I+ + LA
Sbjct: 67 GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126
Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
L+ L +L L N++ I L LTNL L + ++ + L + KL TL NKIS
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186
Query: 249 IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVC 308
I +A L L E + +NQ+SD V+ L N L + L + P + +V
Sbjct: 187 DISPLASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243
Query: 309 PWIVQIDATL 318
+
Sbjct: 244 NVVKGPSGAP 253
Score = 179 bits (456), Expect = 1e-54
Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 1/228 (0%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
++ + + L + L + +T IE + L NL L+L N+I ++
Sbjct: 21 AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP 80
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L +L + +L L N + + + L+ +K L+L +I + L GL+NL+ LYL N+
Sbjct: 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 140
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
I+ I LA LT L LS+ ++ + L L+ LT L +N ++ I L S L +
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEV 200
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIY 288
+ N+IS + +A+ + L + + +++ V N +
Sbjct: 201 HLKNNQISDVSPLANTSNLFIVTLTNQTITN-QPVFYNNNLVVPNVVK 247
Score = 172 bits (439), Expect = 4e-52
Identities = 58/211 (27%), Positives = 101/211 (47%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
I L + IE + L L LEL DNQ+T + L L + L+LS N ++ +
Sbjct: 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
+ L +++ L L S +I+ + + L L+VL L N+I I L GLTNL+ L +G +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ 162
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
+S + LA+L+KL L N++ I L +L NL +++L N ++ + L + L +
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSD 271
+ I+ + + + +
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
Score = 158 bits (402), Expect = 1e-46
Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 3/205 (1%)
Query: 90 DNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKL 149
+ VI L N + + + + L + L ++ IE V +L L
Sbjct: 6 PTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNL 65
Query: 150 KVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL 209
LEL DN+I + L LT + EL L N + + +A L + L L ++ + L
Sbjct: 66 IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL 125
Query: 210 EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQV 269
L+NL LYL N +T I L L+ L + ++S + +A+L++L +DN++
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185
Query: 270 SDWNTVNVLENNKQLQTIYLDRNPV 294
SD ++ L + L ++L N +
Sbjct: 186 SD---ISPLASLPNLIEVHLKNNQI 207
Score = 145 bits (368), Expect = 1e-41
Identities = 55/191 (28%), Positives = 93/191 (48%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ L L+ N I + + LT + ELEL N L + + L +++ LDL+ +I ++
Sbjct: 65 LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L+NL+ LYL N+I+ I + L L+ L +G+ ++ + L L+ L L NK
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
IS I LASL L + L+ N++ + L +NL + L+ +T +N +
Sbjct: 185 ISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244
Query: 241 DVAYNKISIIQ 251
V + I
Sbjct: 245 VVKGPSGAPIA 255
Score = 61.6 bits (150), Expect = 5e-11
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 198 LQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLT 257
Q + I AL N ++ ++ +T + + TL ++ I+ + +L
Sbjct: 4 TQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLN 63
Query: 258 ELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
L + DNQ++D + L+N ++ + L NP+
Sbjct: 64 NLIGLELKDNQITD---LAPLKNLTKITELELSGNPL 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 181 bits (462), Expect = 1e-55
Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 3/235 (1%)
Query: 84 KELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENV 143
E + I + D +L + + + L +++++ ++ I ++ +
Sbjct: 5 SETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGI 64
Query: 144 DHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRL 203
+L + L L NK+ I+ L L NL L+L +NK+ + +L L KL LSL+ N +
Sbjct: 65 QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124
Query: 204 RTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFW 263
I L L L LYL N +T I L KL+TL + N+IS I +A LT+LQ +
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184
Query: 264 INDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL 318
++ N +SD + L K L + L P + +V + D +L
Sbjct: 185 LSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
Score = 177 bits (450), Expect = 6e-54
Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 5/234 (2%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ L+ + + L ++ ++ ++ + ++ + L N+ L L+ N++ +IK
Sbjct: 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP 85
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L +L NL L+L NK+ + ++ LKKLK L L N I I L L LE LYLG NK
Sbjct: 86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK 145
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
I+ I L+ LTKL+ LSL+ N++ I L LT L LYLS+N ++ + L + L+ L
Sbjct: 146 ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 205
Query: 241 DVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
++ + + ++L D + T ++ ++ + + +
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLV---TPEIISDDGDYEKPNVKWH 256
Score = 172 bits (439), Expect = 3e-52
Identities = 61/239 (25%), Positives = 113/239 (47%), Gaps = 5/239 (2%)
Query: 69 NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
IK+I + + L +T + L +++ + + + I+ ++G+ +L N+
Sbjct: 12 TPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVT 71
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA 188
KL+L NK++ I+ + +LK L L L +NK++ + +L L L+ L L N IS I+ L
Sbjct: 72 KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131
Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
L +L L L N++ I L LT L L L +N ++ I L KL+ L ++ N IS
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 191
Query: 249 IIQNIAHLTELQEFWINDNQVSD-----WNTVNVLENNKQLQTIYLDRNPVAQDPNYRR 302
++ +A L L + + + + + V K + ++ D +Y +
Sbjct: 192 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 250
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 179 bits (455), Expect = 7e-53
Identities = 80/230 (34%), Positives = 121/230 (52%), Gaps = 3/230 (1%)
Query: 69 NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
N + ++ + LTTL+ L++ N+++ I L L NLE L + N+I +I L L NL+
Sbjct: 165 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 224
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA 188
+L L N++ I + L L L+L +N+I + L GLT L EL LG N+IS I LA
Sbjct: 225 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 284
Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
LT L L L N+L I + L NLT L L N ++ I + S KL+ L NK+S
Sbjct: 285 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 344
Query: 249 IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP 298
+ ++A+LT + NQ+SD + L N ++ + L+ P
Sbjct: 345 DVSSLANLTNINWLSAGHNQISD---LTPLANLTRITQLGLNDQAWTNAP 391
Score = 178 bits (454), Expect = 1e-52
Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 1/228 (0%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ERL + N + I + LT L+ L +NQ++ I L L NL+ L L+ N++++I
Sbjct: 179 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT 238
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L NL L L +N+IS + + L KL L+LG N+I I L GLT L L L +N+
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 298
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
+ I +++L L L+L N + I + +LT L +L+ N ++ + +L + + L
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 358
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIY 288
+N+IS + +A+LT + + +ND ++ VN N T+
Sbjct: 359 SAGHNQISDLTPLANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVK 405
Score = 175 bits (445), Expect = 2e-51
Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 4/234 (1%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ +L + + L + L+ + I+ ++ L NL ++ S N++ +I
Sbjct: 26 KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP 85
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L +L L + + +N+I+ I + +L L L L +N+I I+ L LTNL L L N
Sbjct: 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT 145
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
IS I L+ LT L LS N++ ++ L LT L +L +S N ++ I L LE+L
Sbjct: 146 ISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 204
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
N+IS I + LT L E +N NQ+ D + L + L + L N +
Sbjct: 205 IATNNQISDITPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQI 255
Score = 168 bits (427), Expect = 1e-48
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 4/229 (1%)
Query: 64 LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
+ + I +I L + L +T + L + L I+ I G+++
Sbjct: 7 TITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEY 66
Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
L NL ++ +N+++ I + +L KL + + +N+I I L LTNL L L N+I+
Sbjct: 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 126
Query: 184 IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVA 243
ID L +LT LN L L N + I L LT+L QL N +T ++ L + LE LD++
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDIS 185
Query: 244 YNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
NK+S I +A LT L+ +NQ+SD + L L + L+ N
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQISD---ITPLGILTNLDELSLNGN 231
Score = 115 bits (290), Expect = 3e-29
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 27/220 (12%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ L L N I + + LT L EL+L NQ++ I L L L L+L+ N++ +I
Sbjct: 245 LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 304
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
+ +L NL L L N IS I V L KL+ L +NK+ + +L LTN+ L G N+
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ 364
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTI------------------------ENLEALTNLT 216
IS + LA+LT++ L L + + T
Sbjct: 365 ISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYT 424
Query: 217 QLYLSENGLTTIENLLSN-EKLETLDVAYNKIS--IIQNI 253
+ ++ N + + + T+ S + Q +
Sbjct: 425 EPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464
Score = 74.2 bits (183), Expect = 5e-15
Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 173 ELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLL 232
I++I +L + L + + L +T L G+ +I+ +
Sbjct: 6 ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVE 65
Query: 233 SNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
L ++ + N+++ I + +LT+L + +N+NQ++D + L N L + L N
Sbjct: 66 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNN 122
Score = 37.3 bits (87), Expect = 0.005
Identities = 6/77 (7%), Positives = 22/77 (28%), Gaps = 3/77 (3%)
Query: 216 TQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTV 275
+ + + I + + + ++ + L ++ + + +
Sbjct: 5 SATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS---I 61
Query: 276 NVLENNKQLQTIYLDRN 292
+ +E L I N
Sbjct: 62 DGVEYLNNLTQINFSNN 78
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 162 bits (411), Expect = 2e-48
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 1/185 (0%)
Query: 64 LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
+ R I ++ L + L +T + + L ++ + + I+ + G+
Sbjct: 2 SIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQF 61
Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
NL++L+L N+IS + + L KL+ L + N+++ + + L L+L N++
Sbjct: 62 FTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRD 120
Query: 184 IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVA 243
D+L L L ILS++ N+L++I L L+ L L L N +T L +K+ +D+
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLT 180
Query: 244 YNKIS 248
K
Sbjct: 181 GQKCV 185
Score = 152 bits (386), Expect = 9e-45
Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 2/204 (0%)
Query: 85 ELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVD 144
E + + L N +L + ++ L+ ++ ++ I + +
Sbjct: 1 ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQ 60
Query: 145 HLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLR 204
LK L L N+I + L LT LEEL + +N++ ++ + S L+ L L N LR
Sbjct: 61 FFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC-LSRLFLDNNELR 119
Query: 205 TIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWI 264
++L L NL L + N L +I L KLE LD+ N+I+ + L ++ +
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179
Query: 265 NDNQVSDWNTVNVLENNKQLQTIY 288
+ + V T+
Sbjct: 180 TGQKCVN-EPVKYQPELYITNTVK 202
Score = 147 bits (372), Expect = 1e-42
Identities = 48/206 (23%), Positives = 95/206 (46%), Gaps = 4/206 (1%)
Query: 113 NRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLE 172
I ++ LAN K L ++ + + L ++ ++ I+ + + TNL+
Sbjct: 7 TPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLK 66
Query: 173 ELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLL 232
EL+L N+IS + L LTKL LS+ NRL+ + + + L++L+L N L ++L+
Sbjct: 67 ELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDTDSLI 125
Query: 233 SNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+ LE L + NK+ I + L++L+ ++ N++++ L K++ I L
Sbjct: 126 HLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN---TGGLTRLKKVNWIDLTGQ 182
Query: 293 PVAQDPNYRRKIKLVCPWIVQIDATL 318
+P + + + D
Sbjct: 183 KCVNEPVKYQPELYITNTVKDPDGRW 208
Score = 139 bits (353), Expect = 7e-40
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 6/216 (2%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ L + + + L+ ++ ++ + + + NL+ L LS N+I ++
Sbjct: 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP 80
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L LE+L + N++ + + L L L +N++R ++L L NLE L + NK
Sbjct: 81 LKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK 139
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI-----ENLLSNE 235
+ I L L+KL +L L N + L L + + L+ L
Sbjct: 140 LKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199
Query: 236 KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271
++ D + I N + W +
Sbjct: 200 TVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDE 235
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 150 bits (381), Expect = 4e-42
Identities = 70/250 (28%), Positives = 111/250 (44%), Gaps = 19/250 (7%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
L L N IK + L+ELEL +N ++ +E + L NL L L NR++
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 117 EIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTN 170
I L+NL KL + NKI + + L LK LE+GDN + I + GL +
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 171 LEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLT 226
LE+L L K ++ I L+ L L +L L+ + I + + L L L +S
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 227 TI--ENLLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNK 282
N L L +L + + ++ + +A HL L+ ++ N +S ++L
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG-SMLHELL 272
Query: 283 QLQTIYLDRN 292
+LQ I L
Sbjct: 273 RLQEIQLVGG 282
Score = 141 bits (358), Expect = 9e-39
Identities = 62/249 (24%), Positives = 97/249 (38%), Gaps = 19/249 (7%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
E L L N++ +E + L L+ L L N+L +I L NL LD+S N+I
Sbjct: 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118
Query: 118 IKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNL 171
+ L NL+ L + N + I + L L+ L L + I L L L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178
Query: 172 EELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTT 227
L L I+ I + L +L +L + N NLT L ++ LT
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238
Query: 228 IEN--LLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQ 283
+ + L L+++YN IS I+ L LQE + Q++
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNY 297
Query: 284 LQTIYLDRN 292
L+ + + N
Sbjct: 298 LRVLNVSGN 306
Score = 136 bits (345), Expect = 7e-37
Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 19/250 (7%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
L LR N +K I L+ L +L++ +N++ ++ + L NL+ L++ N +
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142
Query: 118 IKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNL 171
I L +LE+L L ++ I HL L VL L I I + L L
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202
Query: 172 EELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTT 227
+ L + N L LS+ L + + L L L LS N ++T
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262
Query: 228 IEN--LLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQ 283
IE L +L+ + + ++++++ A L L+ ++ NQ++ +V +
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE-SVFHSVGN 321
Query: 284 LQTIYLDRNP 293
L+T+ LD NP
Sbjct: 322 LETLILDSNP 331
Score = 132 bits (333), Expect = 3e-35
Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 17/229 (7%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
T + L+L N++ + + +LE L+L+ N + ++ ++L NL L L SN+
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 137 ISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASL 190
+ I L L L++ +NKI I+ + L NL+ L +G N + I + + L
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNK 246
L L+L+ L +I L L L L L + I + +L+ L++++
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 247 I--SIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
++ N + L I ++ + + L+ + L NP
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPY-LAVRHLVYLRFLNLSYNP 259
Score = 117 bits (294), Expect = 9e-30
Identities = 58/227 (25%), Positives = 83/227 (36%), Gaps = 40/227 (17%)
Query: 62 ERLLLRWNLIKKIENI--HMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
+L + N I + + L LK LE+ DN L I + L +LE L L +
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 118 IKG--LDHLANLEKLYLCSNKISKI--------------------------ENVDHLKKL 149
I L HL L L L I+ I N + L
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226
Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRT 205
L + + + + L L L L N IS I+ L L +L + L +L
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286
Query: 206 IEN--LEALTNLTQLYLSENGLTTIENLL--SNEKLETLDVAYNKIS 248
+E L L L +S N LTT+E + S LETL + N ++
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 146 bits (371), Expect = 6e-41
Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 17/224 (7%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
L L N I+ I+ L L+ L+L N + IE + L NL L+L NR+
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125
Query: 117 EIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGD-NKIRIIEN--LDGLT 169
I +L+ L++L+L +N I I + + + L+ L+LG+ ++ I +GL+
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 170 NLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTT 227
NL L L + I NL L KL+ L L N L I + L +L +L++ ++ +
Sbjct: 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245
Query: 228 IE-NLLSN-EKLETLDVAYNKISIIQNIA--HLTELQEFWINDN 267
IE N N + L +++A+N ++++ + L L+ ++ N
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 146 bits (370), Expect = 1e-40
Identities = 71/230 (30%), Positives = 110/230 (47%), Gaps = 20/230 (8%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
T + L L++NQ+ +I+ L +LEIL LS N IR I + LANL L L N+
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGK-NKISRIDN--LAS 189
++ I N +L KLK L L +N I I + + + +L L LG+ ++S I
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 190 LTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDVAYNKI 247
L+ L L+L LR I NL L L +L LS N L+ I L+ L + ++I
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 248 SIIQN--IAHLTELQEFWINDNQVSDWNTV--NVLENNKQLQTIYLDRNP 293
+I+ +L L E + N ++ + ++ L+ I+L NP
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT---LLPHDLFTPLHHLERIHLHHNP 290
Score = 120 bits (302), Expect = 5e-31
Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 33/220 (15%)
Query: 83 LKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISK 139
++ L + + + T N +L+L N+I+ IK HL +LE L L N I
Sbjct: 45 FSKVICVRKNLREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 140 IENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI--DNLASLTKL 193
IE + L L LEL DN++ I N L+ L+EL+L N I I + L
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162
Query: 194 NILSLQ-CNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQN 252
L L RL I A L+ L L++A + I N
Sbjct: 163 RRLDLGELKRLSYISE-GAFEGLS-------------------NLRYLNLAMCNLREIPN 202
Query: 253 IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+ L +L E ++ N +S + LQ +++ ++
Sbjct: 203 LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQS 241
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 146 bits (370), Expect = 1e-40
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 17/224 (7%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
L L N I+ I+ L L+ L+L N + IE + L +L L+L N +
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
Query: 117 EIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGD-NKIRIIEN--LDGLT 169
I ++L+ L +L+L +N I I + + + L L+LG+ K+ I +GL
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196
Query: 170 NLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTT 227
NL+ L LG I + NL L L L + N I L++L +L++ + ++
Sbjct: 197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256
Query: 228 IEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDN 267
IE L L++A+N +S + + L L E ++ N
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 144 bits (364), Expect = 9e-40
Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 20/230 (8%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
+ + L L +N + +I+ L +LE+L L N IR+I + LA+L L L N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 137 ISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGK-NKISRIDN--LAS 189
++ I + ++L KL+ L L +N I I + + + +L L LG+ K+ I
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 190 LTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDVAYNKI 247
L L L+L ++ + NL L L +L +S N I L+ L V +++
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
Query: 248 SIIQN--IAHLTELQEFWINDNQVSDWNTV--NVLENNKQLQTIYLDRNP 293
S+I+ L L E + N +S ++ ++ + L ++L NP
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLS---SLPHDLFTPLRYLVELHLHHNP 301
Score = 143 bits (362), Expect = 2e-39
Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 17/224 (7%)
Query: 83 LKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISK 139
++ L+ + + + + N L+L N I+ I+ HL +LE L L N I +
Sbjct: 56 FSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 140 IENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI--DNLASLTKL 193
IE + L L LEL DN + +I + + L+ L EL+L N I I + L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 194 NILSLQ-CNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII 250
L L +L I E L NL L L + + NL LE L+++ N I
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233
Query: 251 QN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+ L+ L++ W+ ++QVS N + L + L N
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHN 276
Score = 42.4 bits (100), Expect = 1e-04
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 214 NLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVS 270
+++ + GL+ + + + SN L++ N I +IQ HL L+ + N +
Sbjct: 55 QFSKVVCTRRGLSEVPQGIPSN--TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112
Query: 271 DWNTVNVLENNKQLQTIYLDRN 292
V L T+ L N
Sbjct: 113 QI-EVGAFNGLASLNTLELFDN 133
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 140 bits (355), Expect = 1e-39
Identities = 51/243 (20%), Positives = 102/243 (41%), Gaps = 16/243 (6%)
Query: 61 IERLLLRWNLIKKI--ENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
+ + + +K+ +KEL+L N L+ I L LE+L+LS N +
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 117 EIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYL 176
E L+ L+ L L L +N + ++ ++ L +N I + + +YL
Sbjct: 72 ETLDLESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRVS-CSRGQGKKNIYL 127
Query: 177 GKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN---LEALTNLTQLYLSENGLTTIENL 231
NKI+ + +L +++ L L+ N + T+ + L L L N + ++
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187
Query: 232 LSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLD 290
+ KL+TLD++ NK++ + + + +N++ L ++ L+ L
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLR 245
Query: 291 RNP 293
N
Sbjct: 246 GNG 248
Score = 138 bits (351), Expect = 6e-39
Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 13/248 (5%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
++ L L N + +I + T L+ L L N L +L++L L LDL+ N ++E+
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL 95
Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLD--GLTNLEELYL 176
++E L+ +N IS++ + K + L +NKI ++ +LD + ++ L L
Sbjct: 96 L---VGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151
Query: 177 GKNKISRIDN---LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLS 233
N+I ++ AS L L+LQ N + ++ L L LS N L +
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211
Query: 234 N-EKLETLDVAYNKISIIQN-IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDR 291
+ + + + NK+ +I+ + L+ F + N + N+++QT+
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Query: 292 NPVAQDPN 299
N
Sbjct: 272 VKKLTGQN 279
Score = 112 bits (283), Expect = 3e-29
Identities = 38/200 (19%), Positives = 80/200 (40%), Gaps = 16/200 (8%)
Query: 102 LINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
+I ++ + +++ N+++L L N +S+I + KL++L L N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQ 217
+ +L+ L+ L L L N + + S+ L+ N + +
Sbjct: 69 VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLH---AANNNISRVS-CSRGQGKKN 124
Query: 218 LYLSENGLTTIENLL--SNEKLETLDVAYNKISIIQN---IAHLTELQEFWINDNQVSDW 272
+YL+ N +T + +L +++ LD+ N+I + A L+ + N +
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-- 182
Query: 273 NTVNVLENNKQLQTIYLDRN 292
V +L+T+ L N
Sbjct: 183 -DVKGQVVFAKLKTLDLSSN 201
Score = 93.1 bits (232), Expect = 6e-22
Identities = 38/195 (19%), Positives = 76/195 (38%), Gaps = 9/195 (4%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRIR 116
+ + L N I + + + ++ L+L N++ + + LE L+L +N I
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 117 EIKGLDHLANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRIIEN-LDGLTNLEEL 174
++KG A L+ L L SNK++ + + + L +NK+ +IE L NLE
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242
Query: 175 YLGKNKISRIDNLASLTKLN-ILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLS 233
L N +K + ++ ++ + T L G E+L +
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ-NEEECTVPTLGHYGAYCCEDLPA 301
Query: 234 NEKLETLDVAYNKIS 248
+ + ++
Sbjct: 302 PFADRLIALGHHHHH 316
Score = 44.2 bits (105), Expect = 3e-05
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 207 ENLEALTNLTQLYLSENGLTTI--ENLLSNEKLETLDVAYNKISIIQN--IAHLTELQEF 262
E + ++++ L S ++ LD++ N +S I +A T+L+
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63
Query: 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
++ N + + LE+ L+T+ L+ N
Sbjct: 64 NLSSNVLYE---TLDLESLSTLRTLDLNNN 90
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 137 bits (348), Expect = 2e-38
Identities = 60/253 (23%), Positives = 100/253 (39%), Gaps = 24/253 (9%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
L+L N I KI L L+ L L NQL + L+ L + N I +++
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVR 137
Query: 120 G--LDHLANLEKLYLCSNKI--SKIENV--DHLKKLKVLELGDNKIRIIENLDGLTNLEE 173
+ L + + L +N + S IEN +KKL + + D I I +L E
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTE 196
Query: 174 LYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE 229
L+L NKI+++D L L L L L N + ++N L +L +L+L+ N L +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256
Query: 230 NLLSN-EKLETLDVAYNKISIIQNIA--------HLTELQEFWINDNQVSDWN-TVNVLE 279
L++ + ++ + + N IS I + + N V W +
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316
Query: 280 NNKQLQTIYLDRN 292
+ L
Sbjct: 317 CVYVRAAVQLGNY 329
Score = 135 bits (341), Expect = 2e-37
Identities = 63/254 (24%), Positives = 115/254 (45%), Gaps = 22/254 (8%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
L L+ N I +I++ L L L L +N+++ I L+ LE L LS N+++
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 117 EIKGLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRI--IEN--LDGLTN 170
E+ L++L + N+I+K+ + L ++ V+ELG N ++ IEN G+
Sbjct: 114 ELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 171 LEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI 228
L + + I+ I L L L N++ ++ L+ L NL +L LS N ++ +
Sbjct: 173 LSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 229 E-NLLSN-EKLETLDVAYNKISIIQN-IAHLTELQEFWINDNQ-----VSDWNTVNVLEN 280
+ L+N L L + NK+ + +A +Q ++++N +D+
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291
Query: 281 NKQLQTIYLDRNPV 294
+ L NPV
Sbjct: 292 KASYSGVSLFSNPV 305
Score = 125 bits (316), Expect = 8e-34
Identities = 59/228 (25%), Positives = 106/228 (46%), Gaps = 20/228 (8%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
L+L +N++T I++ L NL L L N+I +I L LE+LYL N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 137 ISKIENVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI----DNLASL 190
+ ++ K L+ L + +N+I + +GL + + LG N + +
Sbjct: 112 LKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDVAYNKIS 248
KL+ + + + TI +LT+L+L N +T + L L L +++N IS
Sbjct: 171 KKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 249 IIQN--IAHLTELQEFWINDNQVSDWNTV-NVLENNKQLQTIYLDRNP 293
+ N +A+ L+E +N+N++ V L ++K +Q +YL N
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNN 274
Score = 83.9 bits (208), Expect = 1e-18
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
+ L L N I K++ + L L +L L N ++ ++N L +L L L+ N++
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 117 EI-KGLDHLANLEKLYLCSNKISKIEN--------VDHLKKLKVLELGDNKIRIIE---- 163
++ GL ++ +YL +N IS I + + L N ++ E
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313
Query: 164 NLDGLTNLEELYLGKNK 180
+ + LG K
Sbjct: 314 TFRCVYVRAAVQLGNYK 330
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 135 bits (342), Expect = 2e-37
Identities = 59/262 (22%), Positives = 109/262 (41%), Gaps = 32/262 (12%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
++ L L N I I N + L+ L L N + IE +L +LE LDLS+N +
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 117 EIKG--LDHLANLEKLYLCSNKISKIENV---DHLKKLKVLELGDN-KIRIIEN--LDGL 168
+ L++L L L N + HL KL++L +G+ I+ GL
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
T LEEL + + + + L S+ ++ L L + + ++ +++ L L +
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233
Query: 225 LTTI----------ENLLSNEKLETLDVAYNKI-SIIQNIAHLTELQEFWINDNQVSDWN 273
L T +L+ + + + +++ + ++ L E + NQ+
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK--- 290
Query: 274 TV--NVLENNKQLQTIYLDRNP 293
+V + + LQ I+L NP
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNP 312
Score = 115 bits (291), Expect = 4e-30
Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 26/234 (11%)
Query: 90 DNQLTVI-ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIENV--D 144
L I L ++ LDLS NRI I L NL+ L L SN I+ IE
Sbjct: 40 SGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97
Query: 145 HLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLASLTKLNILSLQ 199
L L+ L+L N + + + L++L L L N + + LTKL IL +
Sbjct: 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157
Query: 200 CN-RLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQNIA 254
I+ LT L +L + + L + E L S + + L + + ++ I
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217
Query: 255 --HLTELQEFWINDNQVSDWN-------TVNVLENNKQLQTIYLDRNPVAQDPN 299
+ ++ + D + ++ N L + + + + Q
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 138 bits (348), Expect = 4e-37
Identities = 46/238 (19%), Positives = 93/238 (39%), Gaps = 7/238 (2%)
Query: 84 KELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG-LDHLANLEKLYLCSNKISKIEN 142
+ + L D + T L +LS + ++ L+ L++L NK +
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLTI 388
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDN----LASLTKLNILSL 198
+ ++ L L ++ L + + YL + + + +L L
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448
Query: 199 QCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN-EKLETLDVAYNKISIIQNIAHLT 257
L + +LE L +T L LS N L + L+ LE L + N + + +A+L
Sbjct: 449 AHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLP 508
Query: 258 ELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQID 315
LQE + +N++ + L + +L + L N + Q+ + ++ + P + I
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
Score = 94.8 bits (235), Expect = 7e-22
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 4/158 (2%)
Query: 34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQL 93
+LD E E S + + L L++ ++ L L L
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453
Query: 94 TVIENLDTLINLEILDLSFNRIREI-KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVL 152
TV+ +L+ L+ + LDLS NR+R + L L LE L N + ++ V +L +L+ L
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQEL 513
Query: 153 ELGDNKI---RIIENLDGLTNLEELYLGKNKISRIDNL 187
L +N++ I+ L L L L N + + + +
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551
Score = 62.9 bits (152), Expect = 3e-11
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 61 IERLLLRWNLIKKIE-NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
+ L L N ++ + + L L+ L+ DN L ++ + L L+ L L NR+++
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524
Query: 120 GLDHLA---NLEKLYLCSNKISKIEN-----VDHLKKLKVL 152
+ L L L L N + + E + L + +
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 132 bits (335), Expect = 9e-37
Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 22/230 (9%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIE----NLDTLINLEILDLSFNR 114
RL L N ++ + + LT L +L L N L+ + +L+ LDLSFN
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 115 IREI-KGLDHLANLEKLYLCSNKISKIENVD---HLKKLKVLELGDNKIRIIEN--LDGL 168
+ + L LE L + + ++ L+ L L++ R+ N +GL
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 169 TNLEELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
++LE L + N D L L L L +L + +L++L L +S N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 224 GLTTIE-NLLSN-EKLETLDVAYNKISIIQNIA---HLTELQEFWINDNQ 268
+++ L+ LD + N I + + L + N
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259
Score = 123 bits (311), Expect = 2e-33
Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 21/227 (9%)
Query: 84 KELELYDNQLTVI-ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKI 140
E+ LT + + + + L+L N+++ + D L L KL L SN +S
Sbjct: 10 TEIRCNSKGLTSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 141 E----NVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRIDN---LASLTK 192
+ LK L+L N + + N GL LE L + + ++ SL
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 193 LNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTT--IENLLSN-EKLETLDVAYNKI 247
L L + R N L++L L ++ N + ++ + L LD++ ++
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 248 SIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+ A L+ LQ ++ N + LQ + N
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLN 233
Score = 85.4 bits (212), Expect = 3e-19
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 15/158 (9%)
Query: 62 ERLLLRWNLIKKIENI---HMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
E L + + +K++ L L L++ V N + L +LE+L ++ N +
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163
Query: 117 EI---KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLT 169
E L NL L L ++ ++ + L L+VL + N ++ L
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223
Query: 170 NLEELYLGKNKISRI--DNLASL-TKLNILSLQCNRLR 204
+L+ L N I L + L L+L N
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 41.5 bits (98), Expect = 2e-04
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 214 NLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVS 270
+ T++ + GLT++ + S+ L++ NK+ + + LT+L + ++ N +S
Sbjct: 8 SGTEIRCNSKGLTSVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65
Query: 271 DWN-TVNVLENNKQLQTIYLDRN 292
L+ + L N
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFN 88
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 128 bits (324), Expect = 2e-36
Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 33/203 (16%)
Query: 127 LEKLYLCSNKISKIENVDHLKKLKV----LELGDNKI-RIIENLDGLTNLEELYLGKNKI 181
+ K + I E + + L I ++ L L + L L N I
Sbjct: 1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60
Query: 182 SRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLD 241
+I +L+ + L ILSL N ++ IENL+A+ + LE L
Sbjct: 61 EKISSLSGMENLRILSLGRNLIKKIENLDAVAD---------------------TLEELW 99
Query: 242 VAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD---- 297
++YN+I+ + I L L+ ++++N++++W ++ L +L+ + L NP+ D
Sbjct: 100 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159
Query: 298 ---PNYRRKIKLVCPWIVQIDAT 317
YR ++ P + ++D
Sbjct: 160 NATSEYRIEVVKRLPNLKKLDGM 182
Score = 109 bits (275), Expect = 3e-29
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 9/157 (5%)
Query: 88 LYDNQLTVIENLDTLINLEI----LDLSFNRIREI-KGLDHLANLEKLYLCSNKISKIEN 142
+ + + E +++ E L I ++ L L + L L +N I KI +
Sbjct: 6 TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS 65
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTN-LEELYLGKNKISRIDNLASLTKLNILSLQCN 201
+ ++ L++L LG N I+ IENLD + + LEEL++ N+I+ + + L L +L + N
Sbjct: 66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN 125
Query: 202 RLRT---IENLEALTNLTQLYLSENGLTTIENLLSNE 235
++ I+ L AL L L L+ N L +
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162
Score = 87.0 bits (216), Expect = 1e-20
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 20/131 (15%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLIN-LEILDLSFNRIREIKG 120
+ L L N I+KI ++ + L+ L L N + IENLD + + LE L +S+N+I + G
Sbjct: 51 KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG 110
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
++ L NL LY+ +NKI+ +D L L LE+L L N
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALD-------------------KLEDLLLAGNP 151
Query: 181 ISRIDNLASLT 191
+ + T
Sbjct: 152 LYNDYKENNAT 162
Score = 63.5 bits (155), Expect = 3e-12
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 59 VCIERLLLRWNLIKKIENIHMLT-TLKELELYDNQLTVIENLDTLINLEILDLSFNRIRE 117
+ L L NLIKKIEN+ + TL+EL + NQ+ + ++ L+NL +L +S N+I
Sbjct: 70 ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN 129
Query: 118 IKGLDHLA---NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNL 171
+D LA LE L L N + ++ + +I +++ L L L
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENN-------ATSEYRIEVVKRLPNLKKL 179
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 128 bits (324), Expect = 3e-36
Identities = 34/172 (19%), Positives = 73/172 (42%), Gaps = 6/172 (3%)
Query: 63 RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLD 122
LL + I + +L + L + +T + ++ N++ L ++ +
Sbjct: 27 NGLLGQSSTANITEAQ-MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPIS 85
Query: 123 HLANLEKLYLCSNKIS--KIENVDHLKKLKVLELGDNKIRI--IENLDGLTNLEELYLGK 178
L+NLE+L + ++ KI N+ L L +L++ + + ++ L + + L
Sbjct: 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145
Query: 179 N-KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE 229
N I+ I L +L +L L++Q + + +E L QLY + +
Sbjct: 146 NGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197
Score = 121 bits (307), Expect = 8e-34
Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 6/177 (3%)
Query: 80 LTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISK 139
L + I + +L + L+ + ++ G+++ N++ L + + +
Sbjct: 22 FKAYLNGLLGQSSTANITEAQ-MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN 80
Query: 140 IENVDHLKKLKVLELGDNKIR--IIENLDGLTNLEELYLGKNKIS--RIDNLASLTKLNI 195
+ L L+ L + + I NL GLT+L L + + + + +L K+N
Sbjct: 81 YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140
Query: 196 LSLQ-CNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQ 251
+ L + I L+ L L L + +G+ + KL L I +
Sbjct: 141 IDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197
Score = 121 bits (305), Expect = 1e-33
Identities = 34/195 (17%), Positives = 80/195 (41%), Gaps = 6/195 (3%)
Query: 82 TLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIE 141
++ L +Q V T L + I + +L + L + ++ +
Sbjct: 2 AAEQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANIT-EAQMNSLTYITLANINVTDLT 60
Query: 142 NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS--RIDNLASLTKLNILSLQ 199
+++ +K L + + + GL+NLE L + ++ +I NL+ LT L +L +
Sbjct: 61 GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120
Query: 200 CNRL--RTIENLEALTNLTQLYLSEN-GLTTIENLLSNEKLETLDVAYNKISIIQNIAHL 256
+ + + L + + LS N +T I L + +L++L++ ++ + + I
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF 180
Query: 257 TELQEFWINDNQVSD 271
+L + + +
Sbjct: 181 PKLNQLYAFSQTIGG 195
Score = 91.9 bits (229), Expect = 1e-22
Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 5/128 (3%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRI--RE 117
+ L + I L+ L+ L + +T I NL L +L +LD+S +
Sbjct: 69 KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128
Query: 118 IKGLDHLANLEKLYLCSN-KISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYL 176
+ ++ L + + L N I+ I + L +LK L + + + ++ L +LY
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188
Query: 177 GKNKISRI 184
I
Sbjct: 189 FSQTIGGK 196
Score = 86.9 bits (216), Expect = 1e-20
Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 25/173 (14%)
Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
L + + I + L + L + + + ++ N+++L + +
Sbjct: 22 FKAYLNGLLGQSSTANITEAQ-MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN 80
Query: 184 IDNLASLTKLNILSLQCNRLRT--IENLEALTNLTQLYLSENGLTTIENLLSNEKLETLD 241
+ ++ L+ L L + + + I NL LT+LT L +S +
Sbjct: 81 YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD--------------- 125
Query: 242 VAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
SI+ I L ++ ++ N + L+ +L+++ + + V
Sbjct: 126 -----DSILTKINTLPKVNSIDLSYNGAI--TDIMPLKTLPELKSLNIQFDGV 171
Score = 43.0 bits (102), Expect = 3e-05
Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 210 EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQV 269
L ++ I L + +A ++ + I + +++ IN+
Sbjct: 20 STFKAYLNGLLGQSSTANITEA-QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA 78
Query: 270 SDWNTVNVLENNKQLQTIYLDRNPV 294
++ N + L+ + + V
Sbjct: 79 TN---YNPISGLSNLERLRIMGKDV 100
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 128 bits (324), Expect = 2e-35
Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 23/222 (10%)
Query: 90 DNQLTVI-ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIENV--D 144
L + + + + L NRI + NL L+L SN +++I+
Sbjct: 20 QQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77
Query: 145 HLKKLKVLELGDN-KIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQ 199
L L+ L+L DN ++R ++ GL L L+L + + + L L L LQ
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 200 CNRLRTIEN--LEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDVAYNKISIIQNIA- 254
N L+ + + L NLT L+L N ++++ E L+ L + N+++ + A
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 255 -HLTELQEFWINDNQVSDWNTV--NVLENNKQLQTIYLDRNP 293
L L ++ N +S + L + LQ + L+ NP
Sbjct: 198 RDLGRLMTLYLFANNLS---ALPTEALAPLRALQYLRLNDNP 236
Score = 128 bits (323), Expect = 3e-35
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 17/204 (8%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSN- 135
+ + L+ N+++ + NL IL L N + I LA LE+L L N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 136 KISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LAS 189
++ ++ L +L L L ++ + GL L+ LYL N + + +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 190 LTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE-NLLSN-EKLETLDVAYN 245
L L L L NR+ ++ L +L +L L +N + + + + +L TL + N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 246 KISIIQNIA--HLTELQEFWINDN 267
+S + A L LQ +NDN
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDN 235
Score = 125 bits (316), Expect = 3e-34
Identities = 54/202 (26%), Positives = 81/202 (40%), Gaps = 17/202 (8%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFN-RI 115
+R+ L N I + L L L+ N L I+ L LE LDLS N ++
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 116 REIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLT 169
R + L L L+L + ++ L L+ L L DN ++ + + L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 170 NLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGL 225
NL L+L N+IS + L L+ L L NR+ + L L LYL N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 226 TTIEN--LLSNEKLETLDVAYN 245
+ + L L+ L + N
Sbjct: 214 SALPTEALAPLRALQYLRLNDN 235
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 128 bits (324), Expect = 6e-35
Identities = 60/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
L+L N I KI L L++L + N L I + +L L + NRIR++
Sbjct: 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKVP 139
Query: 120 G--LDHLANLEKLYLCSNKISKI---ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
L N+ + + N + KL L + + K+ I D L EL
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNEL 198
Query: 175 YLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN 230
+L NKI I+ L +KL L L N++R IEN L L L +L+L N L+ +
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258
Query: 231 LLSN-EKLETLDVAYNKISIIQN--------IAHLTELQEFWINDNQVSDWN-TVNVLEN 280
L + + L+ + + N I+ + + +N V W
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318
Query: 281 NKQLQTIYLDRN 292
I
Sbjct: 319 VTDRLAIQFGNY 330
Score = 128 bits (324), Expect = 6e-35
Identities = 67/255 (26%), Positives = 108/255 (42%), Gaps = 23/255 (9%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
L L+ N I ++ L L L L +N+++ I L L+ L +S N +
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 117 EIKGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIR--IIEN--LDGLTN 170
EI + ++L +L + N+I K+ L+ + +E+G N + E DGL
Sbjct: 116 EIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173
Query: 171 LEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI 228
L L + + K++ I LN L L N+++ IE L + L +L L N + I
Sbjct: 174 LNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Query: 229 E-NLLSN-EKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQ-----VSDWNTVNVLEN 280
E LS L L + NK+S + + L LQ +++ N V+D+ V
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292
Query: 281 NKQLQTIYLDRNPVA 295
I L NPV
Sbjct: 293 RAYYNGISLFNNPVP 307
Score = 118 bits (299), Expect = 3e-31
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 17/226 (7%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
L+L +N ++ + L +L L L N+I +I K L L+KLY+ N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 137 ISKIENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLASLT 191
+ +I + L L + DN+IR + GL N+ + +G N +
Sbjct: 114 LVEIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 192 KLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISI 249
KLN L + +L I + L +L+L N + IE LL KL L + +N+I +
Sbjct: 173 KLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 250 IQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
I+N ++ L L+E +++N++S L + K LQ +YL N
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNN 275
Score = 115 bits (291), Expect = 3e-30
Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 26/230 (11%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK 119
++L + N + +I ++ ++L EL ++DN++ + L N+ +++ N +
Sbjct: 105 QKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS- 162
Query: 120 GLDHLA----NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEE 173
G + A L L + K++ I D + L L L NKI+ IE L + L
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYR 221
Query: 174 LYLGKNKISRIDN--LASLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTTIEN 230
L LG N+I I+N L+ L L L L N+L + L L L +YL N +T +
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281
Query: 231 --------LLSNEKLETLDVAYNKISI--IQNIA--HLTELQEFWINDNQ 268
+ + + N + +Q +T+ + +
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 63.5 bits (155), Expect = 1e-11
Identities = 31/135 (22%), Positives = 47/135 (34%), Gaps = 30/135 (22%)
Query: 169 TNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
+ L L N IS + D+ L L L L N++ I L L +LY+S+N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 225 LTTI-ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQ 283
L I NL S+ L L + N+I + V +
Sbjct: 114 LVEIPPNLPSS--LVELRIHDNRIRKVPK-----------------------GVFSGLRN 148
Query: 284 LQTIYLDRNPVAQDP 298
+ I + NP+
Sbjct: 149 MNCIEMGGNPLENSG 163
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 124 bits (314), Expect = 5e-34
Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 20/205 (9%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
+ L L +N ++ + + L+ L+L ++ IE+ +L +L L L+ N I+
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 117 EIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN---LDGLT 169
+ L++L+KL ++ +EN HLK LK L + N I+ + LT
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 170 NLEELYLGKNKISRI-----DNLASLTKLNI-LSLQCNRLRTIE-NLEALTNLTQLYLSE 222
NLE L L NKI I L + LN+ L L N + I+ L +L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209
Query: 223 NGLTTIEN--LLSNEKLETLDVAYN 245
N L ++ + L+ + + N
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 124 bits (314), Expect = 5e-34
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 20/207 (9%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
+ K L+L N L + + + L++LDLS I+ I+ L++L L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLAS 189
I + L L+ L + + +EN + L L+EL + N I + ++
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 190 LTKLNILSLQCNRLRTIEN--LEALTNLT----QLYLSENGLTTIE-NLLSNEKLETLDV 242
LT L L L N++++I L L + L LS N + I+ +L+ L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207
Query: 243 AYNKISIIQNIA--HLTELQEFWINDN 267
N++ + + LT LQ+ W++ N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 122 bits (307), Expect = 5e-33
Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 19/208 (9%)
Query: 104 NLEILDLSFNRIREI--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKI 159
+ + LDLSFN +R + L+ L L +I IE+ L L L L N I
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 160 RIIEN--LDGLTNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIENLEA---L 212
+ + GL++L++L + ++ ++N L L L++ N +++ + E L
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 213 TNLTQLYLSENGLTTIE-----NLLSNEKLE-TLDVAYNKISIIQNIA-HLTELQEFWIN 265
TNL L LS N + +I L L +LD++ N ++ IQ A L+E ++
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD 208
Query: 266 DNQVSDWNTVNVLENNKQLQTIYLDRNP 293
NQ+ + + LQ I+L NP
Sbjct: 209 TNQLKSVPD-GIFDRLTSLQKIWLHTNP 235
Score = 78.1 bits (193), Expect = 7e-17
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 60 CIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNR 114
+++L+ + +EN I L TLKEL + N + + L NLE LDLS N+
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 115 IREIKG--LDHLANLE----KLYLCSNKISKIE-NVDHLKKLKVLELGDNKIRIIEN--L 165
I+ I L L + L L N ++ I+ +LK L L N+++ + +
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIF 220
Query: 166 DGLTNLEELYLGKN 179
D LT+L++++L N
Sbjct: 221 DRLTSLQKIWLHTN 234
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 125 bits (315), Expect = 3e-33
Identities = 53/262 (20%), Positives = 103/262 (39%), Gaps = 33/262 (12%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
+ + + + ++K+ + ++ L L D Q+ I+ ++ L + FN IR
Sbjct: 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106
Query: 117 EIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTN 170
+ ++ L L L N +S + + KL L + +N + IE+ T+
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166
Query: 171 LEELYLGKNKISRID------------------NLASLTKLNILSLQCNRLRTIENLEAL 212
L+ L L N+++ +D LA + L N + +
Sbjct: 167 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-PVN 225
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVS 270
LT L L N LT LL+ L +D++YN++ I + L+ +I++N++
Sbjct: 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285
Query: 271 DWNTVNVLENNKQLQTIYLDRN 292
N + L+ + L N
Sbjct: 286 ALNL--YGQPIPTLKVLDLSHN 305
Score = 119 bits (301), Expect = 3e-31
Identities = 52/237 (21%), Positives = 104/237 (43%), Gaps = 12/237 (5%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
L + N +++IE+ T+L+ L+L N+LT ++ L + +L ++S+N +
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLST-- 200
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
L +E+L N I+ + +L +L+L N + L L E+ L N
Sbjct: 201 -LAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258
Query: 180 KISRIDN--LASLTKLNILSLQCNRLRTIEN-LEALTNLTQLYLSENGLTTIE-NLLSNE 235
++ +I + +L L + NRL + + + L L LS N L +E N +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318
Query: 236 KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+LE L + +N I ++ ++ L+ ++ N + + N + D++
Sbjct: 319 RLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374
Score = 111 bits (279), Expect = 5e-28
Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 34/247 (13%)
Query: 76 NIHMLTTLKELELYDNQLTVIENLD--TLINLEILDLSFNRIREIKG--LDHLANLEKLY 131
N+ ++ + V + TL N +I+ + +R++ LD +E L
Sbjct: 16 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75
Query: 132 LCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN- 186
L +I +I+ + ++ L +G N IR + + L L L +N +S +
Sbjct: 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135
Query: 187 -LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE----------NLLS 233
+ KL LS+ N L IE+ +A T+L L LS N LT ++ N+
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 195
Query: 234 NE--------KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQ 285
N +E LD ++N I++++ EL + N ++D L N L
Sbjct: 196 NLLSTLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTD---TAWLLNYPGLV 251
Query: 286 TIYLDRN 292
+ L N
Sbjct: 252 EVDLSYN 258
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 126 bits (318), Expect = 9e-33
Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 17/243 (6%)
Query: 66 LRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLA 125
L I+++++ + LEL + + L L +L+ L + N+ L
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSNKGGNAFSEVDLP 347
Query: 126 NLEKLYLCSNKISKIENV----DHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNK 180
+LE L L N +S LK L+L N + + N GL LE L +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 181 ISRIDN---LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI---ENLL 232
+ ++ SL L L + R N L++L L ++ N +
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 233 SNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLD 290
L LD++ ++ + A L+ LQ + NQ+ + + LQ I+L
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD-GIFDRLTSLQKIWLH 526
Query: 291 RNP 293
NP
Sbjct: 527 TNP 529
Score = 117 bits (294), Expect = 2e-29
Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 22/232 (9%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE----NLDTLINLEILDLSFNRIRE 117
+RL N + L +L+ L+L N L+ + +L+ LDLSFN +
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387
Query: 118 I-KGLDHLANLEKLYLCSNKISKIENV---DHLKKLKVLELGDNKIRIIEN--LDGLTNL 171
+ L LE L + + ++ L+ L L++ R+ N +GL++L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 172 EELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLT 226
E L + N D L L L L +L + +L++L L ++ N L
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507
Query: 227 TIEN--LLSNEKLETLDVAYNKIS-IIQNIAHLTELQEFWINDNQVSDWNTV 275
++ + L+ + + N I +L+ W+N N + +
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR----WLNKNSQKEQGSA 555
Score = 110 bits (277), Expect = 3e-27
Identities = 54/257 (21%), Positives = 101/257 (39%), Gaps = 23/257 (8%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
+ K L+L N L + + + L++LDLS I+ I L++L L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLAS 189
I + L L+ L + + +EN + L L+EL + N I + ++
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 190 LTKLNILSLQCNRLRTI--ENLEALTNLT----QLYLSENGLTTIE-NLLSNEKLETLDV 242
LT L L L N++++I +L L + L LS N + I+ +L L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 243 AYNKISI---IQNIAHLTELQEFWINDNQVSDWNTVNVLENN--KQLQTIYLDRNPVAQD 297
N S+ I L L+ + + + + + + + L + ++ +A
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 298 PNYRRKIKLVCPWIVQI 314
Y I + + +
Sbjct: 268 DYYLDDIIDLFNCLTNV 284
Score = 108 bits (271), Expect = 2e-26
Identities = 59/263 (22%), Positives = 103/263 (39%), Gaps = 31/263 (11%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
+ L L +N ++ + + L+ L+L ++ IE+ +L +L L L+ N I+
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 117 EI--KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRII---ENLDGLT 169
+ L++L+KL ++ +EN HLK LK L + N I+ E LT
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 170 NLEELYLGKNKISRI-----DNLASLTKLNI-LSLQCNRLRTIE-NLEALTNLTQLYLSE 222
NLE L L NKI I L + LN+ L L N + I+ L +L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209
Query: 223 NGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTEL-------------QEFWINDNQV 269
N + + L L+V + +N +L + +EF +
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269
Query: 270 SDWNTVNVLENNKQLQTIYLDRN 292
+ +++ + + L
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSV 292
Score = 97.9 bits (244), Expect = 7e-23
Identities = 52/256 (20%), Positives = 87/256 (33%), Gaps = 26/256 (10%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--------LDTLINLEILDLSF 112
+ +L LR N + L LE++ L N L L L +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 113 NRIREIKGL--------DHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN 164
R+ + + L N+ L S I ++++ + + LEL + K
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321
Query: 165 LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE----NLEALTNLTQLYL 220
L L +L+ L NK + L L L L N L + T+L L L
Sbjct: 322 L-KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 221 SENGLTTIENLLSN-EKLETLDVAYNKISIIQNI---AHLTELQEFWINDNQVSDWNTVN 276
S NG+ T+ + E+LE LD ++ + + L L I+
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-G 439
Query: 277 VLENNKQLQTIYLDRN 292
+ L+ + + N
Sbjct: 440 IFNGLSSLEVLKMAGN 455
Score = 89.4 bits (222), Expect = 5e-20
Identities = 57/280 (20%), Positives = 102/280 (36%), Gaps = 48/280 (17%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
L+L N I+ + L++L++L + L +EN + L L+ L+++ N I+
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 118 IK---GLDHLANLEKLYLCSNKISKI--ENVDHLKKLKV----LELGDNKIRIIE-NLDG 167
K +L NLE L L SNKI I ++ L ++ + L+L N + I+
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 168 LTNLEELYLGKNKISR---IDNLASLTKLNILSLQCNRLRTIENLE-----ALTNLTQLY 219
L +L L N S + L L + L R NLE AL L L
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 220 LSENGLTTIENLLSN--------EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271
+ E L ++ L + + + + I +++ ++ Q + + +
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318
Query: 272 ------------------WNTVNVLENNKQLQTIYLDRNP 293
+ L+ + L RN
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358
Score = 87.1 bits (216), Expect = 3e-19
Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 13/156 (8%)
Query: 61 IERLLLRWNLIKKI-ENIHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRIR 116
++ L L +N + + N L L+ L+ + L + +L NL LD+S R
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 117 EIK--GLDHLANLEKLYLCSNKISKI---ENVDHLKKLKVLELGDNKIRIIEN--LDGLT 169
+ L++LE L + N + + L+ L L+L ++ + + L+
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 170 NLEELYLGKNKISRIDN--LASLTKLNILSLQCNRL 203
+L+ L + N++ + + LT L + L N
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 79.0 bits (195), Expect = 2e-16
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 61 IERLLLRWNLIKKIENI---HMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRI 115
+E L + + +K++ L L L++ V N + L +LE+L ++ N
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 116 REI---KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGL 168
+E L NL L L ++ ++ + L L+VL + N+++ + + D L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517
Query: 169 TNLEELYLGKNKIS 182
T+L++++L N
Sbjct: 518 TSLQKIWLHTNPWD 531
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 124 bits (314), Expect = 1e-32
Identities = 51/242 (21%), Positives = 102/242 (42%), Gaps = 16/242 (6%)
Query: 62 ERLLLRWNLIKKI--ENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
+ + + +K+ +KEL+L N L+ I L LE+L+LS N + E
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 118 IKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLG 177
L+ L+ L L L +N + ++ ++ L +N I + + +YL
Sbjct: 73 TLDLESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRVS-CSRGQGKKNIYLA 128
Query: 178 KNKISRIDNLA--SLTKLNILSLQCNRLRTIEN---LEALTNLTQLYLSENGLTTIENLL 232
NKI+ + +L +++ L L+ N + T+ + L L L N + ++ +
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188
Query: 233 SNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDR 291
KL+TLD++ NK++ + + + +N++ L ++ L+ L
Sbjct: 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRG 246
Query: 292 NP 293
N
Sbjct: 247 NG 248
Score = 123 bits (311), Expect = 3e-32
Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 13/241 (5%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
+ L L N + +I + T L+ L L N L +L++L L LDL+ N ++E+
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL 96
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLG 177
++E L+ +N IS++ + K + L +NKI ++ + + ++ L L
Sbjct: 97 V---GPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 178 KNKISRIDN---LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI-ENLLS 233
N+I ++ AS L L+LQ N + ++ L L LS N L + S
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS 212
Query: 234 NEKLETLDVAYNKISIIQN-IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+ + + NK+ +I+ + L+ F + N + N+++QT+
Sbjct: 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272
Query: 293 P 293
Sbjct: 273 K 273
Score = 101 bits (253), Expect = 3e-24
Identities = 39/200 (19%), Positives = 81/200 (40%), Gaps = 16/200 (8%)
Query: 102 LINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
+I ++ + +++ N+++L L N +S+I + KL++L L N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQ 217
+ +L+ L+ L L L N + + S+ L+ N + +
Sbjct: 69 VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLH---AANNNISRVS-CSRGQGKKN 124
Query: 218 LYLSENGLTTIENLL--SNEKLETLDVAYNKISIIQN---IAHLTELQEFWINDNQVSDW 272
+YL+ N +T + +L +++ LD+ N+I + A L+ + N + D
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD- 183
Query: 273 NTVNVLENNKQLQTIYLDRN 292
V +L+T+ L N
Sbjct: 184 --VKGQVVFAKLKTLDLSSN 201
Score = 97.2 bits (242), Expect = 8e-23
Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 38/264 (14%)
Query: 73 KIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI--KGLDHLANLEKL 130
++ + + +++ L +N ++ + + + L+ N+I + + ++ L
Sbjct: 91 YVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149
Query: 131 YLCSNKISKIEN---VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI-DN 186
L N+I + L+ L L N I ++ L+ L L NK++ +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE 209
Query: 187 LASLTKLNILSLQCNRLRTIEN-LEALTNLTQLYLSENGLTTIEN---LLSNEKLETLDV 242
S + +SL+ N+L IE L NL L NG N++++T+
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269
Query: 243 AYNKISIIQNIAHLTELQEFWINDNQVSD---------------WNTVNVLENNK----- 282
K QN T D + + + ++
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329
Query: 283 -------QLQTIYLDRNPVAQDPN 299
+ + I + +
Sbjct: 330 CERENQARQREIDALKEQYRTVID 353
Score = 95.3 bits (237), Expect = 4e-22
Identities = 43/255 (16%), Positives = 91/255 (35%), Gaps = 19/255 (7%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDT---LINLEILDLSFNRIR 116
+ + L N I + + + ++ L+L N++ + + LE L+L +N I
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 117 EIKGLDHLANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRIIEN-LDGLTNLEEL 174
++KG A L+ L L SNK++ + + + L +NK+ +IE L NLE
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242
Query: 175 YLGKNKISRIDNLASLTKLN-ILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIEN- 230
L N +K + ++ ++ + +N E T T + +
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302
Query: 231 ------LLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLENNKQ 283
L ++ L ++ ++ + +E Q V +
Sbjct: 303 FADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT-VIDQVTLRKQA 361
Query: 284 LQTIYLDRNPVAQDP 298
T+ + + +
Sbjct: 362 KITLEQKKKALDEQV 376
Score = 70.6 bits (173), Expect = 1e-13
Identities = 37/272 (13%), Positives = 75/272 (27%), Gaps = 42/272 (15%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREI-K 119
E L L++N I ++ + LK L+L N+L + + + + L N++ I K
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231
Query: 120 GLDHLANLEKLYLCSNKISKI-------------------------ENVDHLKKLKVLEL 154
L NLE L N +N + +
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
Query: 155 GDNKIRIIENLDGLTNLEELYLGKNKISRIDN---------LASLTKLNILSLQCNRLRT 205
G + L L ++ + + + + + RT
Sbjct: 292 GAYCCEDLPA-PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350
Query: 206 IEN--LEALTNLTQLYLSENGLTTIENLLSNEKLE---TLDVAYNKISIIQNIAHLTELQ 260
+ + L + L + E TL A +I + + LQ
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQ 410
Query: 261 EFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+ + N ++ + ++
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442
Score = 57.9 bits (140), Expect = 1e-09
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 185 DNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETL 240
+ + + I + + L+ ++ N+ +L LS N L+ I L KLE L
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+++ N + ++ L+ L+ +N+N V + L ++T++ N
Sbjct: 64 NLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANN 109
Score = 47.5 bits (113), Expect = 3e-06
Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 43/245 (17%)
Query: 62 ERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVI------------------------ 96
+ LR N + IE + L+ +L N
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276
Query: 97 -ENLDTLINLEILDLSFNRIREIKG--LDHLANLEK-----LYLCSNKISKIE-NVDHLK 147
+N + + ++ D L L++ L ++ ++E ++
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA 336
Query: 148 KLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DNLASLTKLNILSLQC 200
+ + ++ + R + + L K + A L ++
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396
Query: 201 NRL-RTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII-QNIAHLTE 258
L E L L + + + + N + D+ +K + + + A L +
Sbjct: 397 IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKK 456
Query: 259 LQEFW 263
L
Sbjct: 457 LNGEA 461
Score = 32.1 bits (73), Expect = 0.20
Identities = 21/166 (12%), Positives = 50/166 (30%), Gaps = 3/166 (1%)
Query: 64 LLLRWNLIKKIE-NIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG 120
L + + +++E +E++ Q + + L+ + E
Sbjct: 318 LSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
A+ E + +IE ++ L+L ++ E + + ++
Sbjct: 378 NGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDW 437
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT 226
L + N + N + A L +L + E L
Sbjct: 438 DMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 120 bits (304), Expect = 2e-32
Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS 138
L L +N L L L L+L + +++ L L L L N++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 139 KIENV-DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKL 193
+ + L L VL++ N++ + L GL L+ELYL N++ + L KL
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 194 NILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYN 245
LSL N L + L L NL L L EN L TI + + L + N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 116 bits (292), Expect = 1e-30
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 10/172 (5%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
L L NL+ + T L +L L +LT ++ TL L LDLS N+++ +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 120 GL-DHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEEL 174
L L L L + N+++ + + L +L+ L L N+++ + L LE+L
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 175 YLGKNKISRIDN--LASLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSEN 223
L N ++ + L L L+ L LQ N L TI + L +L N
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 111 bits (280), Expect = 5e-29
Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 14/200 (7%)
Query: 104 NLEILDLSFNRIREI-KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIR 160
+ ++ + + L + L+L N + + +L L L ++
Sbjct: 11 SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 161 IIENLDGLTNLEELYLGKNKISRIDNL-ASLTKLNILSLQCNRLRTIEN--LEALTNLTQ 217
++ L L L L N++ + L +L L +L + NRL ++ L L L +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 218 LYLSENGLTTI-ENLLSN-EKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWN 273
LYL N L T+ LL+ KLE L +A N ++ + L L + +N +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--T 186
Query: 274 TVNVLENNKQLQTIYLDRNP 293
+ L +L NP
Sbjct: 187 IPKGFFGSHLLPFAFLHGNP 206
Score = 40.5 bits (95), Expect = 4e-04
Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 212 LTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQ 268
+ + ++ + LT + +L + L ++ N + T L + ++ +
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 269 VSDWNTVNVLENNKQLQTIYLDRN 292
++ + V L T+ L N
Sbjct: 67 LT---KLQVDGTLPVLGTLDLSHN 87
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 123 bits (310), Expect = 2e-31
Identities = 50/256 (19%), Positives = 96/256 (37%), Gaps = 25/256 (9%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIRE 117
+E + L+ + I + H + L+EL+L L+ + + L L L+ L LS N+
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315
Query: 118 IKG--LDHLANLEKLYLCSNKISKIEN---VDHLKKLKVLELGDNKIRIIE----NLDGL 168
+ + +L L + N +++L+ L+ L+L + I + L L
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIENLEA---LTNLTQLYLSEN 223
++L+ L L N+ + +L +L L RL+ + L L L LS +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
Query: 224 GLTTIEN--LLSNEKLETLDVAYNKISIIQNI-----AHLTELQEFWINDNQVSDWNTVN 276
L L+ L++ N L L+ ++ +S +
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQH 494
Query: 277 VLENNKQLQTIYLDRN 292
+ K + + L N
Sbjct: 495 AFTSLKMMNHVDLSHN 510
Score = 113 bits (285), Expect = 3e-28
Identities = 55/257 (21%), Positives = 111/257 (43%), Gaps = 27/257 (10%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRIR 116
++L+L N + + +L L + N + L+ L NL LDLS + I
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 117 EI----KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN---LDG 167
L +L++L+ L L N+ ++ +L++L+L ++++ +
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423
Query: 168 LTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTI-----ENLEALTNLTQLYL 220
L L+ L L + + L L L+LQ N +L+ L L L L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 221 SENGLTTI-ENLLSN-EKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVN 276
S L++I ++ ++ + + +D+++N+++ ++HL + + N +S +
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILP-S 541
Query: 277 VLENNKQLQTIYLDRNP 293
+L Q +TI L +NP
Sbjct: 542 LLPILSQQRTINLRQNP 558
Score = 112 bits (282), Expect = 8e-28
Identities = 44/234 (18%), Positives = 90/234 (38%), Gaps = 22/234 (9%)
Query: 80 LTTLKELELYDNQLTVIENL----DTLINLEILDLSFNRIREIKG--LDHLANLEKLYLC 133
+ +L D I +++E ++L + I + L++L L
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286
Query: 134 SNKISKIEN-VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKIS---RIDNL 187
+ +S++ + + L LK L L NK + +L L + N L
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346
Query: 188 ASLTKLNILSLQCNRLRTIE----NLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLD 241
+L L L L + + T + L L++L L LS N +++ +LE LD
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 242 VAYNKISIIQN---IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+A+ ++ + +L L+ ++ + + ++ + + LQ + L N
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGN 459
Score = 103 bits (258), Expect = 1e-24
Identities = 56/233 (24%), Positives = 89/233 (38%), Gaps = 20/233 (8%)
Query: 80 LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSN 135
+ + LE N L I+N LINL LDL+ +I I L+ L L +N
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 136 KISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LAS 189
+ + + K LK L I I+ L LE LYLG N IS I
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151
Query: 190 LTKLNILSLQCNRLRTI--ENLEALTNLTQLYL--SENGLTTIE-NLLSNEKLETLDVAY 244
KL +L Q N + + E++ +L T L L + N + IE + ++L+
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211
Query: 245 NKISIIQ----NIAHLTELQEFWINDNQVSD-WNTVNVLENNKQLQTIYLDRN 292
+ ++ + + L D D V +++I L ++
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264
Score = 90.5 bits (225), Expect = 3e-20
Identities = 45/230 (19%), Positives = 88/230 (38%), Gaps = 23/230 (10%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRI 115
++ L L +N ++ L+ L+L +L V + L L++L+LS + +
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437
Query: 116 REIKG--LDHLANLEKLYLCSNKISKIENV-----DHLKKLKVLELGDNKIRIIEN--LD 166
D L L+ L L N K L +L++L L + I+
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497
Query: 167 GLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSE 222
L + + L N+++ + L+ L + L+L N + I L L+ + L +
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556
Query: 223 NGLTTIENLLSNEKLETLDVAYNKISIIQNI--AHLTELQEFWINDNQVS 270
N L + + LE K+ ++ + L+ ++D +S
Sbjct: 557 NPLDCTCSNIYF--LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
Score = 83.9 bits (208), Expect = 4e-18
Identities = 39/195 (20%), Positives = 71/195 (36%), Gaps = 30/195 (15%)
Query: 106 EILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENL 165
+ + + EI G + E L N + I+N
Sbjct: 15 KTYNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQN--------------------TTF 53
Query: 166 DGLTNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLS 221
L NL L L + +I I S +L+ L L N L + L L L+
Sbjct: 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113
Query: 222 ENGLTTIEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNV 277
+ G+++I+ L + + LE+L + N IS I+ +L+ +N + +
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK-ED 172
Query: 278 LENNKQLQTIYLDRN 292
+ + +Q + L+ N
Sbjct: 173 MSSLQQATNLSLNLN 187
Score = 40.4 bits (95), Expect = 5e-04
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 218 LYLSENGLTTI-ENLLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNT 274
GL I L ++ E L+ ++N + IQN + L L + Q+ +
Sbjct: 17 YNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74
Query: 275 VNVLENNKQLQTIYLDRNP 293
+ ++ +L T+ L NP
Sbjct: 75 -DTFQSQHRLDTLVLTANP 92
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 122 bits (308), Expect = 3e-31
Identities = 51/224 (22%), Positives = 79/224 (35%), Gaps = 13/224 (5%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS 138
T+ E L + L N+ + L+ I+ ++ + + L + ++
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK 320
Query: 139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA----SLTKLN 194
+ +D L LK L L NK I L +L L L +N +S + L
Sbjct: 321 QFPTLD-LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379
Query: 195 ILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTTIEN---LLSNEKLETLDVAYNKISII 250
L L N + N L L L + L + LS EKL LD++Y I
Sbjct: 380 HLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439
Query: 251 QN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+ LT L + N D NV N L + L +
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Score = 120 bits (304), Expect = 8e-31
Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 17/247 (6%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ + L IK +E++ + L + QL LD L L+ L L+ N+
Sbjct: 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD-LPFLKSLTLTMNKGSISFK 345
Query: 121 LDHLANLEKLYLCSNKISKIEN----VDHLKKLKVLELGDNKIRII-ENLDGLTNLEELY 175
L +L L L N +S L+ L+L N I+ N GL L+ L
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405
Query: 176 LGKNKISRIDN---LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI-- 228
+ + R+ SL KL L + + + LT+L L ++ N
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465
Query: 229 ENLLSN-EKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQ 285
N+ +N L LD++ ++ I L LQ ++ N + ++ + L
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLS 524
Query: 286 TIYLDRN 292
T+ N
Sbjct: 525 TLDCSFN 531
Score = 117 bits (296), Expect = 1e-29
Identities = 53/226 (23%), Positives = 85/226 (37%), Gaps = 19/226 (8%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD----TLINLEILDLSFNRIRE 117
+ L L N L +L L+L N L+ +L LDLSFN
Sbjct: 331 KSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390
Query: 118 IKG-LDHLANLEKLYLCSNKISKIENVD---HLKKLKVLELGDNKIRIIEN--LDGLTNL 171
+ L L+ L + + ++ L+KL L++ +I + GLT+L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450
Query: 172 EELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLT 226
L + N + A+ T L L L +L I + L L L +S N L
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510
Query: 227 TIEN--LLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQ 268
+++ L TLD ++N+I + I L F + +N
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556
Score = 106 bits (267), Expect = 7e-26
Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 26/238 (10%)
Query: 81 TTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
++ K ++L N L ++ + L+ LDLS I I K L +L L L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLAS 189
I L L+ L + K+ +E+ + L L++L + N I ++
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 190 LTKLNILSLQCNRLRTI--ENLEALTNLTQ----LYLSENGLTTIE-NLLSNEKLETLDV 242
LT L + L N ++TI +L+ L Q L +S N + I+ KL L +
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211
Query: 243 AYNKIS---IIQNIAHLTELQEFWINDNQVSDWNTV-----NVLENNKQLQTIYLDRN 292
N S + + +L L + + D + +++E +
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269
Score = 103 bits (258), Expect = 1e-24
Identities = 50/276 (18%), Positives = 98/276 (35%), Gaps = 30/276 (10%)
Query: 61 IERLLLRWNLIKKI--ENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
+ + L +N +K + + + L+ L+L ++ IE+ L +L L L+ N I+
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 117 EI--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIR---IIENLDGLT 169
L +LE L K++ +E+ + L LK L + N I + LT
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153
Query: 170 NLEELYLGKNKISRI-----DNLASLTKLNI-LSLQCNRLRTIE-NLEALTNLTQLYLSE 222
NL + L N I I L ++N+ L + N + I+ L +L L
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213
Query: 223 NGLTTI---ENLLSNEKLETLDVAYNKISIIQNIAH--------LTELQEFWINDNQVSD 271
N ++ L + L + + +N+ L ++ +D
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273
Query: 272 -WNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKL 306
+ + + + L + + + K
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309
Score = 95.9 bits (239), Expect = 4e-22
Identities = 53/262 (20%), Positives = 96/262 (36%), Gaps = 37/262 (14%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
L+L N I+ LT+L+ L + +L +E+ + LI L+ L+++ N I
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142
Query: 118 IK---GLDHLANLEKLYLCSNKISKIENVD------HLKKLKVLELGDNKIRIIE-NLDG 167
K +L NL + L N I I D + + L++ N I I+
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202
Query: 168 LTNLEELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIENLEALTNLT-------- 216
L EL L N S L +L L++ L + NLE
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262
Query: 217 --QLYLSENGLTTIENL----LSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVS 270
+ L+ + + + L+N + + +A I ++++ + Q I Q+
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLAN--VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK 320
Query: 271 DWNTVNVLENNKQLQTIYLDRN 292
+ L+++ L N
Sbjct: 321 Q----FPTLDLPFLKSLTLTMN 338
Score = 81.6 bits (202), Expect = 2e-17
Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 14/166 (8%)
Query: 61 IERLLLRWNLIKKIEN---IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRI 115
++ L + + +K++ L L L++ + + L +L L ++ N
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 116 REI---KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGL 168
++ + NL L L ++ +I D L +L++L + N + +++ + L
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520
Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIENLEAL 212
+L L N+I L +L N + I +
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKF 566
Score = 36.9 bits (86), Expect = 0.008
Identities = 15/88 (17%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 209 LEALTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWIN 265
+E + N+T + L+ + +++ S+ + +D+++N + I+++ ++ +ELQ ++
Sbjct: 8 IEVVPNIT-YQCMDQKLSKVPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSELQWLDLS 64
Query: 266 DNQVSDWNTVNVLENNKQLQTIYLDRNP 293
++ L + L NP
Sbjct: 65 RCEIETIED-KAWHGLHHLSNLILTGNP 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 122 bits (309), Expect = 3e-31
Identities = 54/230 (23%), Positives = 101/230 (43%), Gaps = 19/230 (8%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKIS 138
+ + + +LT + + D N+ +L+L+ N++R + + L L + N IS
Sbjct: 4 VSHEVADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 139 KIEN--VDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRIDN--LASLTK 192
K+E L LKVL L N++ + + TNL EL+L N I +I N
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Query: 193 LNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE----NLLSNEKLETLDVAYNK 246
L L L N L + + L NL +L LS N + ++ ++ +N L+ L+++ N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Query: 247 ISIIQN--IAHLTELQEFWINDNQVSD--WNTVNVLENNKQLQTIYLDRN 292
I + L ++N+ Q+ + + N ++ + L +
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232
Score = 122 bits (308), Expect = 3e-31
Identities = 65/267 (24%), Positives = 117/267 (43%), Gaps = 26/267 (9%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIR 116
+ L + +N I K+E L LK L L N+L+ + + NL L L N I+
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110
Query: 117 EI--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIE----NLDGL 168
+I NL L L N +S + L+ L+ L L +NKI+ ++ ++
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170
Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRL-----RTIENLEALTNLTQLYLS 221
++L++L L N+I ++ +L L L +L + A T++ L LS
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230
Query: 222 ENGLTTIENL----LSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTV 275
+ L+T N L L LD++YN ++++ N A L +L+ F++ N + +
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS- 289
Query: 276 NVLENNKQLQTIYLDRNPVAQDPNYRR 302
+ L ++ + L R+ Q +
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLAS 316
Score = 120 bits (302), Expect = 2e-30
Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 26/257 (10%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
I L L N ++++ + L L++ N ++ +E L L++L+L N +
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 117 EI--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTN 170
++ K NL +L+L SN I KI+N K L L+L N + + L N
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 171 LEELYLGKNKISRID----NLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
L+EL L NKI + ++ + + L L L N+++ A+ L L+L+
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 225 LT-----TIENLLSNEKLETLDVAYNKISIIQNIA----HLTELQEFWINDNQVSDWNTV 275
L + L+N + L ++ +++S N T L ++ N ++
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGN 265
Query: 276 NVLENNKQLQTIYLDRN 292
+ QL+ +L+ N
Sbjct: 266 DSFAWLPQLEYFFLEYN 282
Score = 117 bits (296), Expect = 1e-29
Identities = 64/264 (24%), Positives = 106/264 (40%), Gaps = 33/264 (12%)
Query: 62 ERLLLRWNLIKKI--ENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
+ L L+ N + ++ + T L EL L N + I+N NL LDLS N +
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Query: 118 IK--GLDHLANLEKLYLCSNKISKIENVD----HLKKLKVLELGDNKIRIIEN--LDGLT 169
K L NL++L L +NKI +++ + LK LEL N+I+ +
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195
Query: 170 NLEELYLGKNKISRID-----NLASLTKLNILSLQCNRLRTIENLE----ALTNLTQLYL 220
L L+L ++ + T + LSL ++L T N TNLT L L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 221 SENGLTTIEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVN 276
S N L + N +LE + YN I + + + L ++ + + ++
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315
Query: 277 VLE--------NNKQLQTIYLDRN 292
L K L+ + ++ N
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDN 339
Score = 115 bits (290), Expect = 9e-29
Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 27/241 (11%)
Query: 80 LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI---KGLDHLANLEKLYLCS 134
+ L L L N+++ IE+ L +LE+LDL N I + + L N+ ++YL
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439
Query: 135 NKISKIEN--VDHLKKLKVLELGDNKIRIIEN----LDGLTNLEELYLGKNKISRIDN-- 186
NK ++ + L+ L L ++ +++ L NL L L N I+ I++
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499
Query: 187 LASLTKLNILSLQCNRLRTIEN----------LEALTNLTQLYLSENGLTTI-ENLLSN- 234
L L KL IL LQ N L + L+ L++L L L NG I + +
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559
Query: 235 EKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+L+ +D+ N ++ + + L+ + N ++ + L + + N
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Query: 293 P 293
P
Sbjct: 620 P 620
Score = 112 bits (283), Expect = 8e-28
Identities = 73/266 (27%), Positives = 119/266 (44%), Gaps = 36/266 (13%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
+ + + KI++ L L+ L + DN + I++ LINL+ L LS +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT- 365
Query: 117 EIKGLDHLA-------NLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRII---EN 164
++ L + L L L NKISKIE+ L L+VL+LG N+I +
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 165 LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN----LEALTNLTQL 218
GL N+ E+YL NK ++ A + L L L+ L+ +++ + L NLT L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485
Query: 219 YLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQN----------IAHLTELQEFWIND 266
LS N + I + L EKLE LD+ +N ++ + + L+ L +
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545
Query: 267 NQVSDWNTVNVLENNKQLQTIYLDRN 292
N + V V ++ +L+ I L N
Sbjct: 546 NGFDE-IPVEVFKDLFELKIIDLGLN 570
Score = 110 bits (278), Expect = 3e-27
Identities = 53/253 (20%), Positives = 98/253 (38%), Gaps = 23/253 (9%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI- 118
E + ++ + + T + L L NQL + L LD+ FN I ++
Sbjct: 7 EVADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65
Query: 119 -KGLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEE 173
+ L L+ L L N++S++ + L L L N I+ I+N NL
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 174 LYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIE----NLEALTNLTQLYLSENGLTT 227
L L N +S L L L L N+++ ++ ++ A ++L +L LS N +
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185
Query: 228 IE-NLLSN-EKLETLDVAYNKIS-----IIQNIAHLTELQEFWINDNQVSDW-NTVNVLE 279
+L L + ++ + T ++ ++++Q+S NT +
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245
Query: 280 NNKQLQTIYLDRN 292
L + L N
Sbjct: 246 KWTNLTMLDLSYN 258
Score = 109 bits (275), Expect = 7e-27
Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 30/238 (12%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVI---ENLDTLINLEILDLSFNRI 115
+ L L N I KIE+ L L+ L+L N++ + L N+ + LS+N+
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442
Query: 116 REI--KGLDHLANLEKLYLCSNKISKIENV----DHLKKLKVLELGDNKIRIIEN--LDG 167
++ + +L++L L + +++ L+ L +L+L +N I I + L+G
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502
Query: 168 LTNLEELYLGKNKISRIDN----------LASLTKLNILSLQCNRLRTI--ENLEALTNL 215
L LE L L N ++R+ L L+ L+IL+L+ N I E + L L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562
Query: 216 TQLYLSENGLTTI-ENLLSN-EKLETLDVAYNKISIIQNIA---HLTELQEFWINDNQ 268
+ L N L T+ ++ +N L++L++ N I+ ++ L E + N
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620
Score = 107 bits (270), Expect = 3e-26
Identities = 62/268 (23%), Positives = 108/268 (40%), Gaps = 38/268 (14%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLT-----VIENLDTLINLEILDLSFNR 114
++L L N IK+ H + L L L + QL + ++ L LS ++
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233
Query: 115 IREI-----KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--L 165
+ GL NL L L N ++ + N L +L+ L N I+ + + L
Sbjct: 234 LSTTSNTTFLGL-KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
Query: 166 DGLTNLEELYLGKN---------KISRIDN--LASLTKLNILSLQCNRLRTIEN--LEAL 212
GL N+ L L ++ + +ID+ L L L+++ N + I++ L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352
Query: 213 TNLTQLYLSENGLTTIE------NLLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWI 264
NL L LS + + L++ L L++ NKIS I++ + L L+ +
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412
Query: 265 NDNQVSDWNTVNVLENNKQLQTIYLDRN 292
N++ T + + IYL N
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYN 440
Score = 65.8 bits (161), Expect = 4e-12
Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 19/140 (13%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN----------LDTLINLEILD 109
L L N I I + + L L+ L+L N L + L L +L IL+
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 110 LSFNRIREI--KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN- 164
L N EI + L L+ + L N ++ + ++ LK L L N I +E
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602
Query: 165 --LDGLTNLEELYLGKNKIS 182
NL EL + N
Sbjct: 603 VFGPAFRNLTELDMRFNPFD 622
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 121 bits (305), Expect = 4e-31
Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 18/228 (7%)
Query: 80 LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSN 135
T++ L + L + L ++ + + +++ + HL +LE L L N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344
Query: 136 KISKI-----ENVDHLKKLKVLELGDNKIRIIEN----LDGLTNLEELYLGKNKISRI-D 185
+ + L+ L L N +R ++ L L NL L + +N + D
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404
Query: 186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYN 245
+ K+ L+L +R ++ L L +S N L + L L+ L ++ N
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSLFLPR--LQELYISRN 461
Query: 246 KISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
K+ + + + L I+ NQ+ + + LQ I+L NP
Sbjct: 462 KLKTLPDASLFPVLLVMKISRNQLKSVPD-GIFDRLTSLQKIWLHTNP 508
Score = 107 bits (268), Expect = 4e-26
Identities = 53/264 (20%), Positives = 111/264 (42%), Gaps = 32/264 (12%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
++ L L +N I I + + L+ L L +++ IE +L +LE LDLS N +
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 117 EIKG--LDHLANLEKLYLCSNKISKIEN---VDHLKKLKVLELGD-NKIRIIEN--LDGL 168
+ L++L+ L L N + +L L+ L +G+ I GL
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
T+L EL + + + L S+ ++ L+L + + + L+++ L L +
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207
Query: 225 LTTIE-------------NLLSNEKLETLDVAYNKI-SIIQNIAHLTELQEFWINDNQVS 270
L + L+ D ++N++ +++ I L+E++ N +
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267
Query: 271 DW--NTVNVLENNKQLQTIYLDRN 292
D+ + +V+ +++T+ + R
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRL 291
Score = 104 bits (260), Expect = 6e-25
Identities = 46/244 (18%), Positives = 97/244 (39%), Gaps = 22/244 (9%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVI-----ENLDTLINLEILDLSFN 113
++R+ + + + + L +L+ L+L +N + +L+ L LS N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371
Query: 114 RIREIKG----LDHLANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRIIENLDGL 168
+R ++ L L NL L + N + ++ +K++ L L IR+++
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-CIP 430
Query: 169 TNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI 228
LE L + N + L +L L + N+L+T+ + L + +S N L ++
Sbjct: 431 QTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSV 488
Query: 229 --ENLLSNEKLETLDVAYNKIS-IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQ 285
L+ + + N I +L+ W+N N + + + K ++
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR----WLNKNSQKEQGSAKCSGSGKPVR 544
Query: 286 TIYL 289
+I
Sbjct: 545 SIIC 548
Score = 103 bits (258), Expect = 9e-25
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 80 LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSN 135
+K L+L N++T I + L NL++L L +RI I+G L +LE L L N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 136 KISKIENV--DHLKKLKVLELGDNKIRIIEN---LDGLTNLEELYLG-KNKISRIDN--L 187
+S + + L LK L L N + + LTNL+ L +G S I
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 188 ASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSN--EKLETLDVA 243
A LT LN L ++ LR ++ L+++ ++ L L + + + ++ + L++
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204
Query: 244 YNKISIIQ 251
++ Q
Sbjct: 205 DTNLARFQ 212
Score = 94.8 bits (236), Expect = 7e-22
Identities = 47/269 (17%), Positives = 105/269 (39%), Gaps = 39/269 (14%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
+ L+L+ + I IE + L +L+ L+L DN L+ + + L +L+ L+L N +
Sbjct: 53 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112
Query: 118 I---KGLDHLANLEKLYLCS-NKISKIENVD--HLKKLKVLELGDNKIRIIEN--LDGLT 169
+ +L NL+ L + + S+I +D L L LE+ +R ++ L +
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172
Query: 170 NLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIE-----NLEALTNLTQLYLSE 222
++ L L ++ + + + L+ + L L+ L + E + + +L
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Query: 223 NGLT---------TIENLLSNEKLETLDVAYNKISIIQNIA----------HLTELQEFW 263
+ LT + +L ++E D N + ++
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292
Query: 264 INDNQVSDWNTVNVLENNKQLQTIYLDRN 292
I + + V ++++ I ++ +
Sbjct: 293 IPQFYLFYDLS-TVYSLLEKVKRITVENS 320
Score = 79.8 bits (197), Expect = 1e-16
Identities = 36/248 (14%), Positives = 84/248 (33%), Gaps = 40/248 (16%)
Query: 61 IERLLLRWNLIKKIENI--HMLTTLKELELYDNQLTVIE-------------NLDTLINL 105
I L L + + I +L++++ LEL D L +
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 106 EILDLSFNRIREIKG---------LDHLANLEKLYLCSNKISKIENVDHLK--KLKVLEL 154
+ D SFN + ++ D ++ + + ++ ++ L +
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293
Query: 155 GDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTI---- 206
+ + L ++ + + +K+ + L L L L N +
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353
Query: 207 -ENLEALTNLTQLYLSENGLTTIEN----LLSNEKLETLDVAYNKISIIQN-IAHLTELQ 260
A +L L LS+N L +++ LL+ + L +LD++ N + + +++
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413
Query: 261 EFWINDNQ 268
++
Sbjct: 414 FLNLSSTG 421
Score = 75.5 bits (186), Expect = 2e-15
Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 34/197 (17%)
Query: 107 ILDLSFNRIREI-KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENL 165
+ D I GL A ++ L L NKI+ I + D L
Sbjct: 9 VCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGD--------------------L 46
Query: 166 DGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLS 221
NL+ L L ++I+ I+ SL L L L N L ++ + L++L L L
Sbjct: 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106
Query: 222 ENGLTTIEN---LLSNEKLETLDVA-YNKISIIQNIA--HLTELQEFWINDNQVSDWNTV 275
N T+ + L+TL + S I+ I LT L E I + +
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQS 165
Query: 276 NVLENNKQLQTIYLDRN 292
L++ + + + L +
Sbjct: 166 QSLKSIRDIHHLTLHLS 182
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 112 bits (281), Expect = 3e-30
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 3/143 (2%)
Query: 176 LGKNKISRIDNLASLTKLNILSLQCNRLRTIENL-EALTNLTQLYLSENGLTTIENLLSN 234
L I + + + L L+ ++ IENL L + S+N + ++
Sbjct: 4 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63
Query: 235 EKLETLDVAYNKISIIQNI--AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+L+TL V N+I I L +L E + +N + + ++ L + K L + + RN
Sbjct: 64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
Query: 293 PVAQDPNYRRKIKLVCPWIVQID 315
PV +YR + P + +D
Sbjct: 124 PVTNKKHYRLYVIYKVPQVRVLD 146
Score = 97.4 bits (243), Expect = 1e-24
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 107 ILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDH-LKKLKVLELGDNKIRIIENL 165
++ L+ I + + +L L KI IEN+ L + ++ DN+IR ++
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 166 DGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNR---LRTIENLEALTNLTQLYL 220
L L+ L + N+I RI +L L L L N L ++ L +L +LT L +
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120
Query: 221 SENGLTTIEN 230
N +T ++
Sbjct: 121 LRNPVTNKKH 130
Score = 94.3 bits (235), Expect = 1e-23
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 66 LRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD-TLINLEILDLSFNRIREIKGLDHL 124
L LI++ +EL+L ++ VIENL TL + +D S N IR++ G L
Sbjct: 4 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63
Query: 125 ANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKI---RIIENLDGLTNLEELYLGKN 179
L+ L + +N+I +I L L L L +N + ++ L L +L L + +N
Sbjct: 64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
Query: 180 KISRIDN 186
++ +
Sbjct: 124 PVTNKKH 130
Score = 88.6 bits (220), Expect = 2e-21
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 86 LELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH-LANLEKLYLCSNKISKIENVD 144
++L + + LDL +I I+ L L + + N+I K++
Sbjct: 2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61
Query: 145 HLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISR---IDNLASLTKLNILSLQ 199
L++LK L + +N+I I L +L EL L N + +D LASL L L +
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121
Query: 200 CNRLRTIEN-----LEALTNLTQL 218
N + ++ + + + L
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVL 145
Score = 61.2 bits (149), Expect = 1e-11
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI 118
+ + N I+K++ +L LK L + +N++ I L +L L L+ N + E+
Sbjct: 44 FDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103
Query: 119 KGLDHLA---NLEKLYLCSNKISKIEN-----VDHLKKLKVL 152
LD LA +L L + N ++ ++ + + +++VL
Sbjct: 104 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 116 bits (293), Expect = 2e-29
Identities = 53/262 (20%), Positives = 103/262 (39%), Gaps = 33/262 (12%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
+ + + + ++K+ + ++ L L D Q+ I+ ++ L + FN IR
Sbjct: 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112
Query: 117 EIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTN 170
+ ++ L L L N +S + + KL L + +N + IE+ T+
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172
Query: 171 LEELYLGKNKISRID------------------NLASLTKLNILSLQCNRLRTIENLEAL 212
L+ L L N+++ +D LA + L N + +
Sbjct: 173 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-PVN 231
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVS 270
LT L L N LT LL+ L +D++YN++ I + L+ +I++N++
Sbjct: 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
Query: 271 DWNTVNVLENNKQLQTIYLDRN 292
N + L+ + L N
Sbjct: 292 ALNL--YGQPIPTLKVLDLSHN 311
Score = 103 bits (258), Expect = 1e-24
Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 34/247 (13%)
Query: 76 NIHMLTTLKELELYDNQLTVIENLD--TLINLEILDLSFNRIREIKG--LDHLANLEKLY 131
N+ ++ + V + TL N +I+ + +R++ LD +E L
Sbjct: 22 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81
Query: 132 LCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN- 186
L +I +I+ + ++ L +G N IR + + L L L +N +S +
Sbjct: 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141
Query: 187 -LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE----------NLLS 233
+ KL LS+ N L IE+ +A T+L L LS N LT ++ N+
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 201
Query: 234 NE--------KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQ 285
N +E LD ++N I++++ EL + N ++D L N L
Sbjct: 202 NLLSTLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTD---TAWLLNYPGLV 257
Query: 286 TIYLDRN 292
+ L N
Sbjct: 258 EVDLSYN 264
Score = 99.6 bits (248), Expect = 2e-23
Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 9/191 (4%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL 121
+ +N + + + ++EL+ N + V+ + L IL L N + + L
Sbjct: 195 FHANVSYN---LLSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWL 250
Query: 122 DHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN-LDGLTNLEELYLGK 178
+ L ++ L N++ KI +++L+ L + +N++ + + L+ L L
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 310
Query: 179 NKISRID-NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKL 237
N + ++ N +L L L N + T+ L L L LS N +
Sbjct: 311 NHLLHVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLTLSHNDWDCNSLRALFRNV 369
Query: 238 ETLDVAYNKIS 248
V
Sbjct: 370 ARPAVDDADQH 380
Score = 76.5 bits (188), Expect = 1e-15
Identities = 34/185 (18%), Positives = 70/185 (37%), Gaps = 25/185 (13%)
Query: 134 SNKISKIENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LAS 189
+ + L K++ ++ +R + LD +E L L +I ID A
Sbjct: 38 TQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 97
Query: 190 LTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYN 245
+ L + N +R + + + LT L L N L+++ + KL TL ++ N
Sbjct: 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157
Query: 246 KISIIQNIA--HLTELQEFWINDNQVSD---------------WNTVNVLENNKQLQTIY 288
+ I++ T LQ ++ N+++ +N ++ L ++ +
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217
Query: 289 LDRNP 293
N
Sbjct: 218 ASHNS 222
Score = 73.8 bits (181), Expect = 9e-15
Identities = 43/233 (18%), Positives = 78/233 (33%), Gaps = 12/233 (5%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI- 118
L L+ N + + L E++L N+L I + LE L +S NR+ +
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Query: 119 KGLDHLANLEKLYLCSNKISKIE-NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLG 177
+ L+ L L N + +E N +L+ L L N I + L L+ L L
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLTLS 353
Query: 178 KNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKL 237
N A + ++ + + L + L + ++ +
Sbjct: 354 HNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSV 413
Query: 238 -------ETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQ 283
+ A + I+ +Q+++H Q VN L Q
Sbjct: 414 VEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466
Score = 45.3 bits (107), Expect = 1e-05
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 185 DNLASLTKLNILSLQCNRLRTIENLEA--LTNLTQLYLSENGLTTIEN--LLSNEKLETL 240
NL + + E L N + + + + L S ++E L
Sbjct: 21 SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80
Query: 241 DVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
++ +I I A + +Q+ ++ N + +V +N L + L+RN
Sbjct: 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERN 133
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 115 bits (289), Expect = 1e-28
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ L I+++++ + LEL + + L L +L+ L + N+
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-KLKSLKRLTFTSNKGGNAFS 342
Query: 121 LDHLANLEKLYLCSNKISKIENVD----HLKKLKVLELGDNKIR-IIENLDGLTNLEELY 175
L +LE L L N +S LK L+L N + + N GL LE L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402
Query: 176 LGKNKISRIDN---LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI-- 228
+ + ++ SL L L + R N L++L L ++ N
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 229 -ENLLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQ 285
+ L LD++ ++ + L+ LQ ++ N + LQ
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQ 521
Query: 286 TIYLDRN 292
+ N
Sbjct: 522 VLDYSLN 528
Score = 104 bits (262), Expect = 3e-25
Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 31/263 (11%)
Query: 61 IERLLLRWNLIKKI--ENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
+ L L +N ++ + + L+ L+L ++ IE+ +L +L L L+ N I+
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 117 EI--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIR---IIENLDGLT 169
+ L++L+KL ++ +EN + HLK LK L + N I+ + E LT
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 170 NLEELYLGKNKISRI-----DNLASLTKLNI-LSLQCNRLRTIE-NLEALTNLTQLYLSE 222
NLE L L NKI I L + LN+ L L N + I+ L +L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209
Query: 223 NGLTTI---ENLLSNEKLETLDVAYNKISIIQNIAHLT----------ELQEFWINDNQV 269
N + + LE + + N+ ++EF +
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269
Query: 270 SDWNTVNVLENNKQLQTIYLDRN 292
+ +++ + + L
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSV 292
Score = 103 bits (260), Expect = 6e-25
Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 23/235 (9%)
Query: 81 TTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
+ K L+L N L + + + L++LDLS I+ I L++L L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLAS 189
I + L L+ L + + +EN + L L+EL + N I + ++
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 190 LTKLNILSLQCNRLRTI--ENLEALTNLT----QLYLSENGLTTIE-NLLSNEKLETLDV 242
LT L L L N++++I +L L + L LS N + I+ +L L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 243 AYNKISIIQN---IAHLTELQEFWINDNQVSDWNTVNVLENN--KQLQTIYLDRN 292
N S+ I L L+ + + + + + + + L + ++
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Score = 97.4 bits (243), Expect = 9e-23
Identities = 53/237 (22%), Positives = 94/237 (39%), Gaps = 30/237 (12%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
L+L N I+ + L++L++L + L +EN + L L+ L+++ N I+
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 118 IK---GLDHLANLEKLYLCSNKISKI--ENVDHLKKLKV----LELGDNKIR-IIENLDG 167
K +L NLE L L SNKI I ++ L ++ + L+L N + I
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 168 LTNLEELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIENLE-----ALTNLTQLY 219
L +L L N S + L L + L R NLE AL L L
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 220 LSENGLTTIENLLSN--------EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQ 268
+ E L ++ L + + + + I +++ ++ Q + + +
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315
Score = 92.4 bits (230), Expect = 5e-21
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 20/207 (9%)
Query: 62 ERLLLRWNLIKKIENIHM----LTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIR 116
E L L N + T+LK L+L N + + N L LE LD + ++
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409
Query: 117 EIKG---LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRII---ENLDGL 168
++ L NL L + N + L L+VL++ N + + L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
NL L L + ++ ++ SL+ L +L++ N +++ + L +L L S N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529
Query: 225 LTT-IENLLSN--EKLETLDVAYNKIS 248
+ T + L + L L++ N +
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 88.5 bits (220), Expect = 1e-19
Identities = 50/258 (19%), Positives = 84/258 (32%), Gaps = 30/258 (11%)
Query: 62 ERLLLRWNLIKKIENI------HMLTTLKELELYDNQLTVIE-NLDTLINLEILDLSFNR 114
E L L N I+ I M L+L N + I+ I L L L N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211
Query: 115 IREI---KGLDHLANLEKLYLCSNKISKIENVDH--------LKKLKVLELGDNKIRIIE 163
+ LA LE L + N++ L L + E +
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271
Query: 164 N-----LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
+ + LTN+ L I R+ + + L L + L L +L +L
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-KLKSLKRL 330
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIA----HLTELQEFWINDNQVSDWNT 274
+ N + + LE LD++ N +S + T L+ ++ N V
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--M 388
Query: 275 VNVLENNKQLQTIYLDRN 292
+ +QL+ + +
Sbjct: 389 SSNFLGLEQLEHLDFQHS 406
Score = 73.1 bits (180), Expect = 1e-14
Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Query: 149 LKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLR 204
K L+L N +R + + L+ L L + +I I++ SL+ L+ L L N ++
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 205 TIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKIS---IIQNIAHLT 257
++ L++L +L E L ++EN + + L+ L+VA+N I + + ++LT
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 258 ELQEFWINDNQVSDWNTVNVLENNKQLQ----TIYLDRNP 293
L+ ++ N++ L Q+ ++ L NP
Sbjct: 150 NLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNP 188
Score = 69.3 bits (170), Expect = 3e-13
Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 16/174 (9%)
Query: 61 IERLLLRWNLIKKI---ENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRI 115
+E L + + +K++ L L L++ V N + L +LE+L ++ N
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 116 REI---KGLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIEN--LDGL 168
+E L NL L L ++ ++ + L L+VL + N ++ L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517
Query: 169 TNLEELYLGKNKISRIDNLA---SLTKLNILSLQCNRLR-TIENLEALTNLTQL 218
+L+ L N I + L L+L N T E+ L +
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 571
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 110 bits (276), Expect = 1e-28
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
++L L+ N + + + H LT L+ L L DN+L + L NLE L ++ N+++
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 118 I--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNL 171
+ D L NL +L L N++ + D L KL L LG N+++ + D LT+L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 172 EELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
+EL L N++ R+ A LT+L L L N+L+ + ++L L L L EN
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 107 bits (270), Expect = 9e-28
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 12/160 (7%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
K+L+L N+L+ + + L L +L L+ N+++ + L NLE L++ NK
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SL 190
+ + D L L L L N+++ + D LT L L LG N++ + L
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI 228
T L L L N+L+ + + LT L L L N L +
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Score = 102 bits (257), Expect = 7e-26
Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 17/183 (9%)
Query: 125 ANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNK 180
A+ +KL L SNK+S + + L KL++L L DNK++ + L NLE L++ NK
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 181 ISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE----NLL 232
+ + L L L L N+L+++ ++LT LT L L N L ++ + L
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 233 SNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLD 290
++ L+ L + N++ + A LTEL+ +++NQ+ ++ ++L+ + L
Sbjct: 157 TS--LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQ 213
Query: 291 RNP 293
NP
Sbjct: 214 ENP 216
Score = 85.4 bits (212), Expect = 2e-19
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 149 LKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLR 204
K L+L NK+ + + LT L LYL NK+ + L L L + N+L+
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 205 TIEN--LEALTNLTQLYLSENGLTTIEN----LLSNEKLETLDVAYNKISIIQNIA--HL 256
+ + L NL +L L N L ++ L+ L L + YN++ + L
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK--LTYLSLGYNELQSLPKGVFDKL 156
Query: 257 TELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP 298
T L+E + +NQ+ + +L+T+ LD N + + P
Sbjct: 157 TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVP 197
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 112 bits (283), Expect = 3e-28
Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 11/233 (4%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ L + I + I LT L +L N +T + +L NL L N++ +
Sbjct: 44 LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNLD- 101
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
+ L L L +NK++K+ +V L L N + I ++ T L EL NK
Sbjct: 102 VTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNK 159
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
++ T+L L N++ + ++ L +L N +T + +L N +L L
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFL 217
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
D + NK++ I ++ LT+L F + N +++ + + +L T++ +
Sbjct: 218 DCSSNKLTEI-DVTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTD 265
Score = 107 bits (270), Expect = 2e-26
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 80 LTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISK 139
+ I + + L L LD + I ++ G++ L L KL SN I+
Sbjct: 20 FASEVAAAFEMQATDTI-SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT 78
Query: 140 IENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQ 199
+ ++ L L NK+ + ++ LT L L NK++++D ++ L L+
Sbjct: 79 L-DLSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCA 135
Query: 200 CNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTEL 259
N L I ++ T LT+L N T ++ +L TLD ++NKI+ + +++ L
Sbjct: 136 RNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-DVSQNKLL 193
Query: 260 QEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+ N ++ + L N QL + N
Sbjct: 194 NRLNCDTNNITKLD----LNQNIQLTFLDCSSN 222
Score = 107 bits (269), Expect = 2e-26
Identities = 49/233 (21%), Positives = 105/233 (45%), Gaps = 11/233 (4%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ L N + +I ++ T L EL+ + N+ ++ L LD SFN+I E+
Sbjct: 129 LTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD- 186
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
+ L +L +N I+K+ +++ +L L+ NK+ I ++ LT L N
Sbjct: 187 VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNP 244
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
++ +D +++L+KL L L I +L T L ++ N +L L
Sbjct: 245 LTELD-VSTLSKLTTLHCIQTDLLEI-DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
D I+ + +++ +L ++N+ ++++ + + +N +L+++
Sbjct: 303 DCQAAGITEL-DLSQNPKLVYLYLNNTELTELD----VSHNTKLKSLSCVNAH 350
Score = 102 bits (257), Expect = 8e-25
Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 7/224 (3%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ L +N I ++ ++ L L N +T + +L+ I L LD S N++ EI
Sbjct: 172 LTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEI-D 228
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
+ L L N ++++ +V L KL L + I +L T L +
Sbjct: 229 VTPLTQLTYFDCSVNPLTEL-DVSTLSKLTTLHCIQTDLLEI-DLTHNTQLIYFQAEGCR 286
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
+ ++ T+L +L Q + + +L L LYL+ LT + ++ N KL++L
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELTEL-DVSHNTKLKSL 344
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQL 284
I ++ + L + + Q + N+ +
Sbjct: 345 SCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388
Score = 95.5 bits (238), Expect = 3e-22
Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 5/198 (2%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ L N + +I ++ LT L + N LT + ++ TL L L + EI
Sbjct: 214 LTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPLTEL-DVSTLSKLTTLHCIQTDLLEID- 270
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L H L + K +V H +L +L+ I + +L L LYL +
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTE 329
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
++ +D ++ TKL LS ++ ++ + L + +E T+ T+
Sbjct: 330 LTELD-VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388
Query: 241 DVAYNKISIIQNIAHLTE 258
V+ + + N ++
Sbjct: 389 AVSPDLLDQFGNPMNIEP 406
Score = 70.5 bits (173), Expect = 1e-13
Identities = 27/181 (14%), Positives = 65/181 (35%), Gaps = 10/181 (5%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
+ L + +I ++ T L + + ++ L +LD I E+
Sbjct: 256 LTTLHCIQTDLLEI-DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD- 313
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L LYL + +++++ +V H KLK L + I+ ++ + L + + +
Sbjct: 314 LSQNPKLVYLYLNNTELTEL-DVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQ 372
Query: 181 ISRID-------NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLS 233
+ +L ++L N + + + ++ L+T ++
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432
Query: 234 N 234
Sbjct: 433 Y 433
Score = 60.5 bits (147), Expect = 2e-10
Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 2/161 (1%)
Query: 73 KIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYL 132
K ++ T L L+ +T + +L L L L+ + E+ + H L+ L
Sbjct: 289 KELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSC 346
Query: 133 CSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTK 192
+ I +V + L + + + N + + + + + N ++
Sbjct: 347 VNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406
Query: 193 LNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLS 233
+ + N Y + I ++
Sbjct: 407 GDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVT 447
Score = 38.5 bits (90), Expect = 0.002
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 197 SLQCNRLRTIENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQNIA 254
+L+ + ++ + N + + + + L +LD + I+ + I
Sbjct: 2 TLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE 61
Query: 255 HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
LT L + N ++ + L N L + D N
Sbjct: 62 KLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSN 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 110 bits (276), Expect = 6e-28
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 17/160 (10%)
Query: 84 KELELYDNQLTVI-ENLDTLINLEILDLSFNRIREIKG---LDHLANLEKLYLCSNKISK 139
L QL + ++L + +LDLS N + ++ L NL L L N ++
Sbjct: 21 NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78
Query: 140 IEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SLTKL 193
I + + L+ L+L N + ++ L LE L L N I +D A + +L
Sbjct: 79 ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138
Query: 194 NILSLQCNRLRTIE-----NLEALTNLTQLYLSENGLTTI 228
L L N++ + L L L LS N L +
Sbjct: 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Score = 102 bits (256), Expect = 4e-25
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 18/161 (11%)
Query: 81 TTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSN 135
+ L+L N L+ + L NL L LS N + I + + NL L L SN
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 136 KISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DN 186
+ ++ L+ L+VL L +N I +++ + + L++LYL +N+ISR +
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 187 LASLTKLNILSLQCNRLRTI--ENLEALTNLTQ--LYLSEN 223
L KL +L L N+L+ + +L+ L + LYL N
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
Score = 96.8 bits (241), Expect = 4e-23
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 16/155 (10%)
Query: 61 IERLLLRWNLIKKIENI---HMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRI 115
L L N + ++ LT L L L N L I + + NL LDLS N +
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 116 REIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIE-----NLD 166
+ L LE L L +N I ++ + + +L+ L L N+I + +
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160
Query: 167 GLTNLEELYLGKNKISRI--DNLASLTKLNILSLQ 199
L L L L NK+ ++ +L L L
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
Score = 80.3 bits (198), Expect = 3e-17
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
LLL N + I + + L+ L+L N L ++ L LE+L L N I
Sbjct: 67 HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126
Query: 118 IKG--LDHLANLEKLYLCSNKISKIE-----NVDHLKKLKVLELGDNKIRII--ENLDGL 168
+ + +A L+KLYL N+IS+ + + L KL +L+L NK++ + +L L
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186
Query: 169 TNL--EELYLGKN 179
LYL N
Sbjct: 187 PAWVKNGLYLHNN 199
Score = 47.1 bits (112), Expect = 4e-06
Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 213 TNLTQLYLSENGLTTI--ENLLSN-EKLETLDVAYNKISIIQNIA--HLTELQEFWINDN 267
+ L LS N L+ + E + L +L +++N ++ I + A + L+ ++ N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 268 QVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN 299
+ + + + + L+ + L N +
Sbjct: 99 HLHTLDE-FLFSDLQALEVLLLYNNHIVVVDR 129
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 112 bits (283), Expect = 6e-28
Identities = 50/234 (21%), Positives = 96/234 (41%), Gaps = 20/234 (8%)
Query: 74 IENIHMLTTLKELELYDNQLTVIENLD----TLINLEILDLSFNRIREIKG--LDHLANL 127
++ + + + + + ++ LDLS + + + L +L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292
Query: 128 EKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISR 183
+ L L NKI+KI + L L+VL L N + + + GL + + L KN I+
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352
Query: 184 IDN--LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLD 241
I + L KL L L+ N L TI + ++ ++LS N L T+ + +
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIHFI---PSIPDIFLSGNKLVTLPKINLT--ANLIH 407
Query: 242 VAYNKISIIQN---IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
++ N++ + + + LQ +N N+ S + N L+ ++L N
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Score = 109 bits (275), Expect = 8e-27
Identities = 55/274 (20%), Positives = 101/274 (36%), Gaps = 48/274 (17%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
++ L L +N I KI + + L L+ L L N L + + L + +DL N I
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 117 EIKG--LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLD-------- 166
I+ L L+ L L N ++ I + + + L NK+ + ++
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPKINLTANLIHL 408
Query: 167 ---------------GLTNLEELYLGKNKISRIDN---LASLTKLNILSLQCNRLRTIEN 208
+ +L+ L L +N+ S + L L L N L+
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468
Query: 209 -------LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQNIAHLTEL 259
E L++L LYL+ N L ++ L L + N+++++ + L
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL 528
Query: 260 QEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
+ I+ NQ+ N + L + + N
Sbjct: 529 EILDISRNQLLAPN----PDVFVSLSVLDITHNK 558
Score = 99.5 bits (248), Expect = 3e-23
Identities = 54/274 (19%), Positives = 99/274 (36%), Gaps = 44/274 (16%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVI----ENLDTLINLEILDLSFNRI 115
L L + I + L L EL LY L+ L L LDLS N+I
Sbjct: 76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135
Query: 116 REIK---GLDHLANLEKLYLCSNKISKIENVD----HLKKLKVLELGDNKIRIIENLD-- 166
R + L +L+ + SN+I + + K L L N + ++D
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195
Query: 167 ------GLTNLEELYLGKNKIS--------------RIDNLASLTKLNILSLQCNRLRTI 206
LE L + N + + +L + + ++
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255
Query: 207 ENL----EALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQNIA--HLTE 258
+ A +++ L LS + ++ + + + L+ L++AYNKI+ I + A L
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 259 LQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
LQ ++ N + + + ++ I L +N
Sbjct: 316 LQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKN 348
Score = 97.6 bits (243), Expect = 1e-22
Identities = 46/229 (20%), Positives = 76/229 (33%), Gaps = 26/229 (11%)
Query: 80 LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR---EIKGLDHLANLEKLYLCS 134
L T + L L N + + L L++L+L + + +L NL L L S
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82
Query: 135 NKISKIEN--VDHLKKLKVLELGDNKIRII----ENLDGLTNLEELYLGKNKISRI---D 185
+KI + L L L L + L L L L KN+I +
Sbjct: 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142
Query: 186 NLASLTKLNILSLQCNRLRTIEN--LEALT--NLTQLYLSENGLTTIE--------NLLS 233
+ L L + N++ + LE L L+ L+ N L + N
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 234 NEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNK 282
N LE LDV+ N ++ + + ++ +
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251
Score = 95.3 bits (237), Expect = 7e-22
Identities = 51/229 (22%), Positives = 83/229 (36%), Gaps = 28/229 (12%)
Query: 91 NQLTVIENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKIS-KIENV--DH 145
LT + L E L LSFN IR + L L+ L L S I+ +
Sbjct: 14 CNLTQV--PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN 71
Query: 146 LKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI----DNLASLTKLNILSLQ 199
L L++L+LG +KI + GL +L EL L +S +L L L L
Sbjct: 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131
Query: 200 CNRLRTIE---NLEALTNLTQLYLSENGLTTIENL----LSNEKLETLDVAYNKISIIQN 252
N++R++ + L +L + S N + + L + L +A N + +
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Query: 253 IA--------HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
+ L+ ++ N + T N + Q L
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Score = 85.2 bits (211), Expect = 2e-18
Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 18/183 (9%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRIR 116
I + L N + + I++ T + L +N+L ++ L + +L+IL L+ NR
Sbjct: 382 SIPDIFLSGNKLVTLPKINL--TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439
Query: 117 EIKG---LDHLANLEKLYLCSNKISKIENVD-------HLKKLKVLELGDNKIRIIEN-- 164
G +LE+L+L N + + L L+VL L N + +
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499
Query: 165 LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENG 224
LT L L L N+++ + + L IL + N+L N + +L+ L ++ N
Sbjct: 500 FSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAP-NPDVFVSLSVLDITHNK 558
Query: 225 LTT 227
Sbjct: 559 FIC 561
Score = 69.4 bits (170), Expect = 3e-13
Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 17/179 (9%)
Query: 62 ERLLLRWNLIKKIEN---IHMLTTLKELELYDNQLTVIEN-------LDTLINLEILDLS 111
+ L+L N +L++L L +N L + + L +L++L L+
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488
Query: 112 FNRIREIKG--LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLT 169
N + + HL L L L SN+++ + + D L++L++ N++ N D
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAP-NPDVFV 547
Query: 170 NLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI 228
+L L + NK L++ L + + + S L ++
Sbjct: 548 SLSVLDITHNKFICECELSTFINW----LNHTNVTIAGPPADIYCVYPDSFSGVSLFSL 602
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 110 bits (276), Expect = 5e-27
Identities = 46/258 (17%), Positives = 99/258 (38%), Gaps = 31/258 (12%)
Query: 63 RLLLRWNLIKKI-ENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI--K 119
++ N I I + I LT L+ + ++ T + ++ E + + + E
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFT---YDNIAVDWEDANSDYAKQYENEEL 485
Query: 120 GLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKI-----------RIIENLD 166
+L +L + L + + + L +L+ L + N+ R+ ++ D
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545
Query: 167 GLTNLEELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSEN 223
++ Y+G N + +L + KL +L N++R +E LT L L N
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN 605
Query: 224 GLTTI-ENLLSN-EKLETLDVAYNKISII---QNIAHLTELQEFWINDNQVS----DWNT 274
+ I E+ + +++E L ++NK+ I N + + + N++ + +
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665
Query: 275 VNVLENNKQLQTIYLDRN 292
T+ L N
Sbjct: 666 SMDDYKGINASTVTLSYN 683
Score = 104 bits (262), Expect = 3e-25
Identities = 43/267 (16%), Positives = 88/267 (32%), Gaps = 39/267 (14%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI- 118
L N ++ +E L +L+L NQ+ I +E L S N+++ I
Sbjct: 576 GLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635
Query: 119 --KGLDHLANLEKLYLCSNKISKIE-------NVDHLKKLKVLELGDNKIRII--ENLDG 167
+ + + NKI + + L N+I+ E
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695
Query: 168 LTNLEELYLGKNKISRI---------DNLASLTKLNILSLQCNRLRTIEN---LEALTNL 215
+ + + L N ++ I N + L + L+ N+L ++ + L L
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL 755
Query: 216 TQLYLSENGLTTIENLLSN-EKLETLDVAYNKI--------SIIQNIAHLTELQEFWIND 266
+ + +S N ++ N +L+ + + + I L + I
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815
Query: 267 NQVSDWNTVNVLENNKQLQTIYLDRNP 293
N + + + QL + + NP
Sbjct: 816 NDIRKVDE----KLTPQLYILDIADNP 838
Score = 96.5 bits (240), Expect = 3e-22
Identities = 39/259 (15%), Positives = 85/259 (32%), Gaps = 29/259 (11%)
Query: 61 IERLLLRWNLIKKIEN---IHMLTTLKELELYDNQLTVIENLDTLINLEILDL------- 110
+ R + I+ + L +L + + + + + L
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432
Query: 111 SFNRIREI-KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLT 169
NRI I K + L L+ +Y ++ + + + + L
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLK 491
Query: 170 NLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTI-----------ENLEALTNLT 216
+L ++ L D L L +L L++ CNR + ++ + +
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551
Query: 217 QLYLSENGLTTI---ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWN 273
Y+ N L +L KL LD +NK+ ++ +L + ++ NQ+ +
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIP 611
Query: 274 TVNVLENNKQLQTIYLDRN 292
+ Q++ + N
Sbjct: 612 E-DFCAFTDQVEGLGFSHN 629
Score = 91.1 bits (226), Expect = 2e-20
Identities = 32/223 (14%), Positives = 73/223 (32%), Gaps = 33/223 (14%)
Query: 62 ERLLLRWNLIKKIE-------NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSF 112
+ +N I + + + L N++ E T + + LS
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706
Query: 113 NRIREI---------KGLDHLANLEKLYLCSNKISKIEN---VDHLKKLKVLELGDNKIR 160
N + I + L + L NK++ + + L L +++ N
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766
Query: 161 II-ENLDGLTNLEELYL------GKNKISRI--DNLASLTKLNILSLQCNRLRTIENLEA 211
+ L+ + N+I R + + L L + N +R ++ +
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE-KL 825
Query: 212 LTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQN 252
L L +++N +I+ ++ + + Y+K I+
Sbjct: 826 TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868
Score = 87.2 bits (216), Expect = 4e-19
Identities = 49/275 (17%), Positives = 95/275 (34%), Gaps = 54/275 (19%)
Query: 69 NLIKKI-ENIHMLTTLKELELYDNQLTVIENLDTLINL--EILDLSFNRIREI---KGLD 122
++ + I LT LK L + TV L L ++ + +RIR LD
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393
Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN--------LDGLTNLEEL 174
+ L L + I++ + +KK + L D +I + N + LT L+ +
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453
Query: 175 YLGKNKISRI---------------------DNLASLTKLNILSLQ-CNRLRTI-ENLEA 211
Y + + + ++L L + L C + + + L
Sbjct: 454 YFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513
Query: 212 LTNLTQLYLSENGLTTIENLLSN-----------EKLETLDVAYNKISII---QNIAHLT 257
L L L ++ N + L ++ K++ + YN + ++ +
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573
Query: 258 ELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+L N+V + N +L + LD N
Sbjct: 574 KLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDYN 605
Score = 79.5 bits (196), Expect = 1e-16
Identities = 38/268 (14%), Positives = 84/268 (31%), Gaps = 53/268 (19%)
Query: 76 NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREI--------------- 118
++ + L L + + L L++L +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 119 ------------KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN-- 164
LD+ L L + I++ + +KK + L D +I + N
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437
Query: 165 ------LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN-LEALTNLTQ 217
+ LT L+ +Y + + + + S + E L +LT
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDW--EDANSDYAKQYENEELSWSNLKDLTD 495
Query: 218 LYLSENGLTTI--ENLLSNEKLETLDVAYNKIS-----------IIQNIAHLTELQEFWI 264
+ L T + L +L++L++A N+ + + ++Q F++
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555
Query: 265 NDNQVSDWNTVNVLENNKQLQTIYLDRN 292
N + ++ L+ +L + N
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHN 583
Score = 69.1 bits (169), Expect = 3e-13
Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 24/174 (13%)
Query: 62 ERLLLRWNLIKKIEN---------IHMLTTLKELELYDNQLTVIEN---LDTLINLEILD 109
++L NL+ I L ++L N+LT + + TL L +D
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759
Query: 110 LSFNRIREI-KGLDHLANLEKLYLC------SNKISKI--ENVDHLKKLKVLELGDNKIR 160
+S+N + + L+ + N+I + + L L++G N IR
Sbjct: 760 VSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819
Query: 161 IIENLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTIENLEAL 212
++ L L + N ID ++ + + L ++ + I +AL
Sbjct: 820 KVDE-KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872
Score = 69.1 bits (169), Expect = 4e-13
Identities = 38/227 (16%), Positives = 88/227 (38%), Gaps = 19/227 (8%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNKIS 138
KEL+++ +Q V +LD + L L+ + + L L+ L ++ +
Sbjct: 303 NFNKELDMWGDQPGV--DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSET 360
Query: 139 KIENVDHLKKLKVLELGDNKIRIIEN-----LDGLTNLEELYLGKNKISRIDNLASLTKL 193
+ ++L + K RI + LD L L ++ I+R + + K
Sbjct: 361 VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420
Query: 194 NILSLQCNRLRTIEN--------LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYN 245
+ +SL+ ++ + N ++ LT L +Y + + T + E +
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480
Query: 246 KISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+ + ++L +L + + + + L + +LQ++ + N
Sbjct: 481 EN-EELSWSNLKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACN 525
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 105 bits (264), Expect = 7e-27
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL 121
+ L+ + + L ++ ++ ++ + ++ + L N+ L L N++ +I L
Sbjct: 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL 81
Query: 122 DHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLG 177
L NL L L N++ + N D L LK L L +N+++ + + D LTNL L L
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141
Query: 178 KNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI 228
N++ + LT L L L N+L+++ + LT L L L +N L ++
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Score = 103 bits (259), Expect = 4e-26
Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 33/222 (14%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
+ L +T + L +++ + + + I+ ++G+ +L N+ L L NK+ I
Sbjct: 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI 78
Query: 141 ENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNIL 196
+ L L L L N+++ + N D LTNL+EL L +N++ + + LT L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 197 SLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIA 254
+L N+L+++ + LTNLT+L LS N L ++ ++K
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-----------VFDK-------- 179
Query: 255 HLTELQEFWINDNQ---VSDWNTVNVLENNKQLQTIYLDRNP 293
LT+L++ + NQ V D V + LQ I+L NP
Sbjct: 180 -LTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNP 216
Score = 100 bits (251), Expect = 5e-25
Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 10/173 (5%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI-- 118
I++++ + IK ++ I L ++ L L N+L I L L NL L L+ N+++ +
Sbjct: 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPN 102
Query: 119 KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEEL 174
D L NL++L L N++ + + D L L L L N+++ + D LTNL EL
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 175 YLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
L N++ + LT+L L L N+L+++ + + LT+L ++L +N
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 41.2 bits (97), Expect = 2e-04
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDW 272
+ L + +T ++ + + I +Q I +L ++ + N++
Sbjct: 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-- 76
Query: 273 NTVNVLENNKQLQTIYLDRNPVAQDPN 299
++ L+ L + L N + PN
Sbjct: 77 -DISALKELTNLTYLILTGNQLQSLPN 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 108 bits (271), Expect = 9e-27
Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 18/232 (7%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI-KG 120
R + ++ + + ELEL + L+ + L +LE L S N + E+ +
Sbjct: 53 GNGEQREMAVSRLRDC-LDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL 109
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L +L +S + L+ L + +N++ + L + L+ + + N
Sbjct: 110 PQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
+ ++ + L ++ N+L + L+ L LT +Y N L + +L + LE++
Sbjct: 165 LKKLPD--LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS--LESI 220
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
N + + + +L L + ++N + + + L+ + + N
Sbjct: 221 VAGNNILEELPELQNLPFLTTIYADNNLLK-----TLPDLPPSLEALNVRDN 267
Score = 103 bits (258), Expect = 7e-25
Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 26/223 (11%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL 121
+ + + N +KK+ + + +L+ + +NQL + L L L + N ++++
Sbjct: 156 KIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP-- 211
Query: 122 DHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKI 181
D +LE + +N + ++ + +L L + +N ++ + +L +LE L + N +
Sbjct: 212 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYL 269
Query: 182 SRI-DNLASLTKLNILSLQCNRL-RTIENLEAL--------------TNLTQLYLSENGL 225
+ + + SLT L++ + L NL L +L +L +S N L
Sbjct: 270 TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329
Query: 226 TTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQ 268
+ L LE L ++N ++ + L++ + N
Sbjct: 330 IELPALPPR--LERLIASFNHLAEV--PELPQNLKQLHVEYNP 368
Score = 87.7 bits (218), Expect = 2e-19
Identities = 30/209 (14%), Positives = 72/209 (34%), Gaps = 26/209 (12%)
Query: 80 LTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREIKGLDHLA------------- 125
T L+E + + LT + + + + +++ +
Sbjct: 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69
Query: 126 --NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKIS 182
+L L + +S + + L+ L N + + E L +L +S
Sbjct: 70 DRQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 127
Query: 183 RIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDV 242
+ L L + N+L + L+ + L + + N L + +L + LE +
Sbjct: 128 DL-----PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS--LEFIAA 180
Query: 243 AYNKISIIQNIAHLTELQEFWINDNQVSD 271
N++ + + +L L + ++N +
Sbjct: 181 GNNQLEELPELQNLPFLTAIYADNNSLKK 209
Score = 85.4 bits (212), Expect = 9e-19
Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 47/246 (19%)
Query: 62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENL------------------DTLI 103
E ++ N+++++ + L L + +N L + +L +
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQ 277
Query: 104 NLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIE 163
+L LD+S N + L NL L SN+I + D L+ L + +NK+ +
Sbjct: 278 SLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRSLC--DLPPSLEELNVSNNKLIELP 333
Query: 164 NLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL-------------- 209
L LE L N ++ + L L L ++ N LR ++
Sbjct: 334 AL--PPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389
Query: 210 ---EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAH--LTELQEFWI 264
E NL QL++ N L ++ + +E L + ++ AH +L++
Sbjct: 390 EVPELPQNLKQLHVETNPLREFPDIPES--VEDLRMNSERVVDPYEFAHETTDKLEDDVF 447
Query: 265 NDNQVS 270
+
Sbjct: 448 EHHHHH 453
Score = 51.5 bits (124), Expect = 1e-07
Identities = 25/179 (13%), Positives = 56/179 (31%), Gaps = 37/179 (20%)
Query: 146 LKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNR 202
L+ + + + + + + E Y ++ R ++ + L+
Sbjct: 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69
Query: 203 LRTIENL-----------EALTNLTQLYLSENGLTTIENLLSN----------------- 234
R L E +L L S N LT + L +
Sbjct: 70 DRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 129
Query: 235 -EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
LE L V+ N++ + + + + L+ +++N + + + L+ I N
Sbjct: 130 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-----LPDLPPSLEFIAAGNN 183
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 106 bits (267), Expect = 3e-26
Identities = 60/303 (19%), Positives = 105/303 (34%), Gaps = 72/303 (23%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQL-TVIEN--LDTLINLEILDLSFNRI 115
+ + L N I ++ L L+ L++ VI N L +L IL L +N+
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 116 REIKG--LDHLANLEKLYLCSNKISKI---ENV-DHLKKLKVLELGDNKIRIIEN---LD 166
+++ + LANLE L L + N L L++L L DN I+ I+
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 167 GLTNLEELYLGKNKISRI--DNLASLTKLN--ILSLQCNRLRTIENLEA----------L 212
+ L L NK+ I ++L + + +L L L+ +
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 213 TNLTQLYLSENGLTTIE-----------------------------------------NL 231
T++T L LS NG
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 232 LSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYL 289
L ++T D++ +KI + H T+L++ + N+++ N L + L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNL 330
Query: 290 DRN 292
+N
Sbjct: 331 SQN 333
Score = 99.8 bits (249), Expect = 9e-24
Identities = 65/278 (23%), Positives = 115/278 (41%), Gaps = 49/278 (17%)
Query: 62 ERLLLRWNLIKKIENIHM---LTTLKELELYDNQLTVIENLD----TLINLEILDLSFNR 114
E L+LR N IKKI+ + L+L N++ I D + +L LS
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191
Query: 115 IREIKGL----------DHLANLEKLYLCSNKISKIE-----NVDHLKKLKVLELGDNKI 159
++++ ++ L L N + + K++ L L ++
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251
Query: 160 RI-------IENLDGLT-------NLEELYLGKNKISRIDN--LASLTKLNILSLQCNRL 203
++ D T ++ L K+KI + + T L L+L N +
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Query: 204 RTIEN--LEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDVAYNKISIIQNIA--HLT 257
I++ LT+L +L LS+N L +I + N +KLE LD++YN I + + + L
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 258 ELQEFWINDNQVSDWNTV--NVLENNKQLQTIYLDRNP 293
L+E ++ NQ+ +V + + LQ I+L NP
Sbjct: 372 NLKELALDTNQLK---SVPDGIFDRLTSLQKIWLHTNP 406
Score = 95.6 bits (238), Expect = 3e-22
Identities = 38/226 (16%), Positives = 83/226 (36%), Gaps = 22/226 (9%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG---LDHLANLEKLYLCSN 135
+ ++L N + + L +L+ L + + L++L L L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 136 KISKIEN--VDHLKKLKVLELGDNKIR--IIEN--LDGLTNLEELYLGKNKISRIDN--- 186
+ ++E + L L+VL L + ++ LT+LE L L N I +I
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 187 LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNK 246
++ + ++L L N++++I E L N + + L+ + L+ ++ +
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLS-------SITLQDMNEYWLG 201
Query: 247 ISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
N T + ++ N + + + L +
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Score = 94.8 bits (236), Expect = 6e-22
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 14/181 (7%)
Query: 57 KEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD----TLINLEILDLSF 112
KE +R K I + +N ++ DLS
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284
Query: 113 NRIREIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LD 166
++I + H +LE+L L N+I+KI++ L L L L N + I++ +
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344
Query: 167 GLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSE 222
L LE L L N I + + L L L+L N+L+++ + + LT+L +++L
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404
Query: 223 N 223
N
Sbjct: 405 N 405
Score = 91.7 bits (228), Expect = 6e-21
Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 29/215 (13%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE-----NLDTLINLEILDLSFNR 114
++ + W +K N T++ L+L N + ++ L LS +
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250
Query: 115 IR-------EIKGLDHLA-------NLEKLYLCSNKISKIENV--DHLKKLKVLELGDNK 158
K D+ ++ L +KI + H L+ L L N+
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310
Query: 159 IRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEAL 212
I I++ GLT+L +L L +N + ID+ +L KL +L L N +R + + L
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Query: 213 TNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYN 245
NL +L L N L ++ + L+ + + N
Sbjct: 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 72.1 bits (177), Expect = 2e-14
Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 25/158 (15%)
Query: 149 LKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLASLTKLNILSLQCNRL 203
+ ++L N I + L +L+ L + + + + L+ L IL L N+
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 204 RTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
+E L NL L L++ L +LS + LT L+
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLD--GAVLSGNFFK----------------PLTSLEM 133
Query: 262 FWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN 299
+ DN + + N ++ + L N V
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 100 bits (251), Expect = 6e-26
Identities = 20/155 (12%), Positives = 54/155 (34%), Gaps = 6/155 (3%)
Query: 80 LTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREI-KGLDHLANLEKLYLCSNKI 137
L +L+ +LT + + L L + + + + L KL ++
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 62
Query: 138 SKI-ENVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRI-DNLASLTKLN 194
+++ V L + L+ ++ + + L +L +++ + + L + +
Sbjct: 63 TRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKS 122
Query: 195 ILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTTI 228
L L + + L + ++ LT +
Sbjct: 123 KLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDL 157
Score = 94.8 bits (237), Expect = 5e-24
Identities = 20/163 (12%), Positives = 54/163 (33%), Gaps = 7/163 (4%)
Query: 102 LINLEILDLSFNRIREI-KGLDHLANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKI 159
L L + + + + L KL +++++ V L + L+ ++
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 62
Query: 160 RII-ENLDGLTNLEELYLGKNKISRI-DNLASLTKLNILSLQCNRLRTI-ENLEALTNLT 216
+ + L +L +++R+ + L + + L L + + L +
Sbjct: 63 TRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKS 122
Query: 217 QLYLSENGLTTIENLLSN-EKLETLDVAYNKISII-QNIAHLT 257
+L LT ++ + Y +++ + L
Sbjct: 123 KLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLG 165
Score = 90.6 bits (226), Expect = 2e-22
Identities = 19/160 (11%), Positives = 55/160 (34%), Gaps = 7/160 (4%)
Query: 62 ERLLLRWNLIKKI-ENIHMLTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREI- 118
+L + + ++ + L +L+ +LT + + L L + + +
Sbjct: 7 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLK 66
Query: 119 KGLDHLANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYL 176
+ L KL +++++ V L + L+ ++ + + L +L
Sbjct: 67 AAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQE 126
Query: 177 GKNKISRI-DNLASLTKLNILSLQCNRLRTI-ENLEALTN 214
+++++ + L + L + E L +
Sbjct: 127 IYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLGH 166
Score = 89.8 bits (224), Expect = 5e-22
Identities = 20/154 (12%), Positives = 53/154 (34%), Gaps = 12/154 (7%)
Query: 124 LANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKI 181
L KL +++++ V L + L+ ++ + + L +L ++
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 62
Query: 182 SRI-DNLASLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTT----IENLLSNE 235
+R+ + L + + L L + + L ++L LT + L
Sbjct: 63 TRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGEL---P 119
Query: 236 KLETLDVAYNKISII-QNIAHLTELQEFWINDNQ 268
+ L Y +++ + + L + + +
Sbjct: 120 EKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQE 153
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 106 bits (267), Expect = 7e-26
Identities = 41/268 (15%), Positives = 94/268 (35%), Gaps = 40/268 (14%)
Query: 65 LLRWNLIKKI-ENIHMLTTLKELELYDNQLTVIE----------NLDTLINLEILDLSFN 113
+ + K+ + L ++ + + N+ E + ++I+ + +N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 114 RIREI---KGLDHLANLEKLYLCSNKISK-IENVDHLKKLKVLELGDNKI-RIIENLDG- 167
++ L + L L N++ + KL L L N+I I N G
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGF 375
Query: 168 LTNLEELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIEN---------LEALTNL 215
+E L NK+ I + S++ ++ + N + +++ N+
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435
Query: 216 TQLYLSENGLTT-IENLLSN-EKLETLDVAYNKIS---------IIQNIAHLTELQEFWI 264
+ + LS N ++ + L S L ++++ N ++ +N + L +
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495
Query: 265 NDNQVSDWNTVNVLENNKQLQTIYLDRN 292
N+++ + L I L N
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYN 523
Score = 101 bits (253), Expect = 6e-24
Identities = 46/248 (18%), Positives = 92/248 (37%), Gaps = 40/248 (16%)
Query: 62 ERLLLRWNLIKKI---ENIHMLTTLKELELYDNQLTVIEN---------LDTLINLEILD 109
E L N +K I + ++ + ++ N++ ++ IN+ ++
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Query: 110 LSFNRIREI--KGLDHLANLEKLYLCSNKISKI---------ENVDHLKKLKVLELGDNK 158
LS N+I + + + L + L N +++I EN + L ++L NK
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499
Query: 159 IRIIEN---LDGLTNLEELYLGKNKISRID----NLASLTKLNI---LSLQCNRLRTI-- 206
+ + + L L + L N S+ N ++L I Q NR
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559
Query: 207 ENLEALTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKIS--IIQNIAHLTELQEFW 263
E + +LTQL + N + + E + N + LD+ N + + E +
Sbjct: 560 EGITLCPSLTQLQIGSNDIRKVNEKITPN--ISVLDIKDNPNISIDLSYVCPYIEAGMYM 617
Query: 264 INDNQVSD 271
+ ++ D
Sbjct: 618 LFYDKTQD 625
Score = 99.0 bits (247), Expect = 3e-23
Identities = 42/258 (16%), Positives = 97/258 (37%), Gaps = 29/258 (11%)
Query: 63 RLLLRWNLIKKI-ENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL 121
++ N I + + + LT L++ + ++ EN+ E + + E
Sbjct: 187 QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKW 245
Query: 122 DHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIR----------IIENLDGLT 169
D+L +L + + + + L +++++ + N+ + +
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305
Query: 170 NLEELYLGKNKISRI---DNLASLTKLNILSLQCNRLRT-IENLEALTNLTQLYLSENGL 225
++ +Y+G N + +L + KL +L N+L + + L L L+ N +
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365
Query: 226 TTI-ENLLSN-EKLETLDVAYNKISII---QNIAHLTELQEFWINDNQVSDWNTVNV--- 277
T I N E++E L A+NK+ I + ++ + + N++ + N
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425
Query: 278 ---LENNKQLQTIYLDRN 292
+ +I L N
Sbjct: 426 DPTPFKGINVSSINLSNN 443
Score = 90.5 bits (225), Expect = 2e-20
Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 26/203 (12%)
Query: 75 ENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREI---------KGLDH 123
+ + L +NQ++ E T L ++L N + EI + +
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486
Query: 124 LANLEKLYLCSNKISKIEN---VDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLG-- 177
L + L NK++K+ + L L ++L N + L+ +
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546
Query: 178 ----KNKISRI--DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI--E 229
N+ R + + L L + N +R + + N++ L + +N +I
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE-KITPNISVLDIKDNPNISIDLS 605
Query: 230 NLLSNEKLETLDVAYNKISIIQN 252
+ + + Y+K I+
Sbjct: 606 YVCPYIEAGMYMLFYDKTQDIRG 628
Score = 72.4 bits (178), Expect = 3e-14
Identities = 39/243 (16%), Positives = 79/243 (32%), Gaps = 31/243 (12%)
Query: 77 IHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIR------EIKGLDHLANLE 128
++ + L L + + + L LE+L L + + KG+ + E
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIR-------IIENLDGLTNLEELYLGKNKI 181
+ K VD+ + +L + I I ++ ++ N I
Sbjct: 137 QKQKMRMHYQKTF-VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195
Query: 182 SRI-DNLASLTKLNILSLQCNRLRTIENLEA--LTNLTQLYLSENGLTTIENLLSNEKLE 238
+ + + LTKL + + EA N + +NL + L
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL---KDLT 252
Query: 239 TLDVAYNKI--SIIQNIAHLTELQEFWINDNQ-------VSDWNTVNVLENNKQLQTIYL 289
++V + + L E+Q + N+ DW + +++Q IY+
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312
Query: 290 DRN 292
N
Sbjct: 313 GYN 315
Score = 45.4 bits (108), Expect = 2e-05
Identities = 20/141 (14%), Positives = 46/141 (32%), Gaps = 12/141 (8%)
Query: 165 LDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSE 222
L+ + L L S D + LT+L +L+L + + E L ++ E
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 223 NGLTTIENLLSNE-----KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTV-- 275
+ + + D+ + I+ + + + D Q+ +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 276 ---NVLENNKQLQTIYLDRNP 293
+ +L+ Y+ +P
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSP 217
Score = 43.9 bits (104), Expect = 5e-05
Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 14/120 (11%)
Query: 61 IERLLLRWNLIKKI-ENIHMLTTLKELELYDNQ-------LTVI-ENLDTLINLEILDLS 111
+ + L +N K +TLK + + + L E + +L L +
Sbjct: 515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574
Query: 112 FNRIREI-KGLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIENLDGL 168
N IR++ + + N+ L + N I V + + L +K + I D L
Sbjct: 575 SNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 104 bits (262), Expect = 5e-25
Identities = 55/237 (23%), Positives = 95/237 (40%), Gaps = 22/237 (9%)
Query: 75 ENIHMLTTLKELELYDNQLTV---IENLDTLINLEILDLSFNRI-----REIKGLDHLAN 126
++ + LK L + N L + L +LE+LDLS N I D
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 127 LEKLYLCSNKISKIENVDHLKKLKVLELGDNKIR-IIENLDGLTNLEELYLGKNKIS-RI 184
L+ L + NKIS +V L+ L++ N I L + L+ L + NK+S
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239
Query: 185 -DNLASLTKLNILSLQCNRLR-TIENLEALTNLTQLYLSENGLT-----TIENLLSNEKL 237
+++ T+L +L++ N+ I L +L L L+EN T + L
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDT--L 296
Query: 238 ETLDVAYNKIS--IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
LD++ N + + L+ ++ N S ++ L + L+ + L N
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Score = 98.1 bits (245), Expect = 6e-23
Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 16/233 (6%)
Query: 76 NIHMLTTLKELELYDNQLT-VIENLDTLINLEILDLSFNR----IREIKGLDHLANLEKL 130
++ LT L+ L L ++ + + +L LDLS N + + L + L+ L
Sbjct: 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131
Query: 131 YLCSNKIS---KIENVDHLKKLKVLELGDNKI-----RIIENLDGLTNLEELYLGKNKIS 182
+ SN + K+ L L+VL+L N I DG L+ L + NKIS
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191
Query: 183 RIDNLASLTKLNILSLQCNRLR-TIENLEALTNLTQLYLSENGLT-TIENLLSN-EKLET 239
+++ L L + N I L + L L +S N L+ +S +L+
Sbjct: 192 GDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 240 LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
L+++ N+ L LQ + +N+ + + L + L N
Sbjct: 252 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Score = 95.7 bits (239), Expect = 4e-22
Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 31/237 (13%)
Query: 80 LTTLKELELYDNQLT-VIENLDTLINLEILDLSFNRIR-EI-KGLDHLANLEKLYLCSNK 136
L+ L++ N + I L L+ LD+S N++ + + + L+ L + SN+
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 137 ISKIENVDHLKKLKVLELGDNKI--RIIENLDG-LTNLEELYLGKNKIS-RI-DNLASLT 191
LK L+ L L +NK I + L G L L L N + S +
Sbjct: 259 FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 192 KLNILSLQCNRLR---TIENLEALTNLTQLYLSENGLT-----TIENLLSNEKLETLDVA 243
L L+L N ++ L + L L LS N + ++ NL ++ L TLD++
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS--LLTLDLS 376
Query: 244 YNKIS--IIQNIAH--LTELQEFWINDNQ----VSDWNTVNVLENNKQLQTIYLDRN 292
N S I+ N+ LQE ++ +N + L N +L +++L N
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-----LSNCSELVSLHLSFN 428
Score = 86.9 bits (216), Expect = 4e-19
Identities = 57/231 (24%), Positives = 91/231 (39%), Gaps = 29/231 (12%)
Query: 83 LKELELYDNQLTVIENLDTLINLEILDLSFNRIR-EIKGLDHLANLEKLYLCSN----KI 137
L L V +L +L LE L LS + I + G A+L L L N +
Sbjct: 57 LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPV 116
Query: 138 SKIENVDHLKKLKVLELGDNKIRI---IENLDGLTNLEELYLGKNKIS-----RIDNLAS 189
+ + ++ LK L + N + + L +LE L L N IS
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176
Query: 190 LTKLNILSLQCNRLR-TIENLEALTNLTQLYLSENGLT-TIENLLSNEKLETLDVAYNKI 247
+L L++ N++ ++ + NL L +S N + I L L+ LD++ NK+
Sbjct: 177 CGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235
Query: 248 S--IIQNIAHLTELQEFWINDNQ----VSDWNTVNVLENNKQLQTIYLDRN 292
S + I+ TEL+ I+ NQ + K LQ + L N
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL-------PLKSLQYLSLAEN 279
Score = 80.3 bits (199), Expect = 6e-17
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 25/218 (11%)
Query: 75 ENIHMLTTLKELELYDNQLT-----VIENLDTLINLEILDLSFNRI-----REIKGLDHL 124
+ + + LK L+L N+ + + NL +L LDLS N + +
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNL--SASLLTLDLSSNNFSGPILPNL-CQNPK 393
Query: 125 ANLEKLYLCSNKIS-KI-ENVDHLKKLKVLELGDNKI--RIIENLDGLTNLEELYLGKNK 180
L++LYL +N + KI + + +L L L N + I +L L+ L +L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 181 IS-RI-DNLASLTKLNILSLQCNRLR-TI-ENLEALTNLTQLYLSENGLT-TIENLLSN- 234
+ I L + L L L N L I L TNL + LS N LT I +
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 235 EKLETLDVAYNKIS--IIQNIAHLTELQEFWINDNQVS 270
E L L ++ N S I + L +N N +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Score = 80.0 bits (198), Expect = 8e-17
Identities = 43/213 (20%), Positives = 80/213 (37%), Gaps = 29/213 (13%)
Query: 101 TLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS-KIENVDHLKKLKVLELGDN-- 157
T I+L L+ L L LE L+L ++ I+ + L L+L N
Sbjct: 53 TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL 112
Query: 158 --KIRIIENLDGLTNLEELYLGKNKIS---RIDNLASLTKLNILSLQCNRL-----RTIE 207
+ + +L + L+ L + N + ++ L L +L L N +
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172
Query: 208 NLEALTNLTQLYLSENGLT---TIENLLSNEKLETLDVAYNKIS-IIQNIAHLTELQEFW 263
+ L L +S N ++ + ++ LE LDV+ N S I + + LQ
Sbjct: 173 LSDGCGELKHLAISGNKISGDVDVSRCVN---LEFLDVSSNNFSTGIPFLGDCSALQHLD 229
Query: 264 INDNQVS----DWNTVNVLENNKQLQTIYLDRN 292
I+ N++S + +L+ + + N
Sbjct: 230 ISGNKLSGDFSRA-----ISTCTELKLLNISSN 257
Score = 76.9 bits (190), Expect = 9e-16
Identities = 56/251 (22%), Positives = 89/251 (35%), Gaps = 39/251 (15%)
Query: 80 LTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRIR-EI-KGLDHLANLEKLYLCSN 135
TL+EL L +N T + L L L LSFN + I L L+ L L L N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 136 KIS-KI-ENVDHLKKLKVLELGDNKI--RIIENLDGLTNLEELYLGKNKIS-RI-DNLAS 189
+ +I + + ++K L+ L L N + I L TNL + L N+++ I +
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 190 LTKLNILSLQCNRLR-TI-ENLEALTNLTQLYLSENGLT-------------TIENLLSN 234
L L IL L N I L +L L L+ N N ++
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 235 E---------KLETLDVAYNKIS----IIQNIAHLTELQEFWINDNQVSDWNTVNVLENN 281
+ + A N + + + L+ I +T +NN
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG-HTSPTFDNN 631
Query: 282 KQLQTIYLDRN 292
+ + + N
Sbjct: 632 GSMMFLDMSYN 642
Score = 66.5 bits (163), Expect = 3e-12
Identities = 44/225 (19%), Positives = 79/225 (35%), Gaps = 38/225 (16%)
Query: 62 ERLLLRWNLIK-KI-ENIHMLTTLKELELYDNQLT-VI-ENLDTLINLEILDLSFNRI-- 115
+ L N + +I + I L L L+L +N + I L +L LDL+ N
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 116 --------------------REIKGLDHLANLEKLYLCSNKISKI----ENVDHLKKLKV 151
+ + + ++ + N + E ++ L
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 152 LELGDNKI--RIIENLDGLTNLEELYLGKNKIS-RI-DNLASLTKLNILSLQCNRLR-TI 206
+ D ++ L + N +S I + S+ L IL+L N + +I
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 207 -ENLEALTNLTQLYLSENGLT-TIENLLSN-EKLETLDVAYNKIS 248
+ + L L L LS N L I +S L +D++ N +S
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 101 bits (254), Expect = 7e-25
Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 22/221 (9%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQ-LTVIEN--LDTLINLEILDLS-FNR 114
L ++ I+ L+++E+ N L VIE L L + + N
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 115 IREI--KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDN-KIRIIEN--LDG 167
+ I + +L NL+ L + + I + +V H + +L++ DN I IE G
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 168 LT-NLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSE 222
L+ L+L KN I I N A + N L + N + L +S
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211
Query: 223 NGLTTI-ENLLSN-EKLETLDVAYNKISIIQNIAHLTELQE 261
+ ++ L N +KL + + + L L E
Sbjct: 212 TRIHSLPSYGLENLKKLRARS--TYNLKKLPTLEKLVALME 250
Score = 95.7 bits (238), Expect = 9e-23
Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 29/253 (11%)
Query: 82 TLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNKI- 137
+ + ++++T I +L N L ++R I +LEK+ + N +
Sbjct: 10 SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67
Query: 138 SKIEN--VDHLKKLKVLEL-GDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SL 190
IE +L KL + + N + I L NL+ L + I + ++
Sbjct: 68 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
Query: 191 TKLNILSLQCN-RLRTIEN--LEALT-NLTQLYLSENGLTTIE----NLLSNEKLETLDV 242
+ +L +Q N + TIE L+ L+L++NG+ I N ++L D
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD- 186
Query: 243 AYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN---PVAQD 297
N + + N + I+ ++ LEN K+L+ P +
Sbjct: 187 -NNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYNLKKLPTLEK 244
Query: 298 PNYRRKIKLVCPW 310
+ L P
Sbjct: 245 LVALMEASLTYPS 257
Score = 91.4 bits (227), Expect = 3e-21
Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 25/232 (10%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG---LDHLANLEKLYLC-S 134
EL +L VI+ +LE +++S N + E+ +L L ++ + +
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89
Query: 135 NKISKIEN--VDHLKKLKVLELGDNKIRIIENL--DGLTNLEELYLGKN-KISRIDN--L 187
N + I +L L+ L + + I+ + ++ L + N I I+
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149
Query: 188 ASLT-KLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDV 242
L+ + IL L N ++ I N N L + ++ LD+
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209
Query: 243 AYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+ +I + + +L +L+ + + + LE L L
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTYP 256
Score = 90.3 bits (224), Expect = 1e-20
Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 16/172 (9%)
Query: 64 LLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENL--DTLINLEILDLSFN-RIREI 118
+ + N + I L L+ L + + + + ++ + +LD+ N I I
Sbjct: 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144
Query: 119 KG---LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNL 171
+ + L+L N I +I N + + ++ +N + + N G +
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204
Query: 172 EELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLS 221
L + + +I + + L +L KL S L+ + LE L L + L+
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLEKLVALMEASLT 254
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 103 bits (258), Expect = 1e-24
Identities = 47/215 (21%), Positives = 102/215 (47%), Gaps = 19/215 (8%)
Query: 80 LTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISK 139
+ L +L ++ NQLT + L L+ L +S N++ + L + L KL+ +N+++
Sbjct: 120 PSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTS 175
Query: 140 IENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQ 199
+ L+ L + DN++ + + L +L+ N+++ + A + L L +
Sbjct: 176 LP--MLPSGLQELSVSDNQLASLP--TLPSELYKLWAYNNRLTSLP--ALPSGLKELIVS 229
Query: 200 CNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII-QNIAHLTE 258
NRL ++ L + L +L +S N LT++ L S L +L V N+++ + +++ HL+
Sbjct: 230 GNRLTSLPVL--PSELKELMVSGNRLTSLPMLPSG--LLSLSVYRNQLTRLPESLIHLSS 285
Query: 259 LQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
+ N +S+ + +++ + P
Sbjct: 286 ETTVNLEGNPLSERTL----QALREITSAPGYSGP 316
Score = 100 bits (250), Expect = 1e-23
Identities = 54/260 (20%), Positives = 109/260 (41%), Gaps = 34/260 (13%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIRE-I 118
I L++ N + + + L+ LE+ NQLT + L+ L I +
Sbjct: 63 ITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP 120
Query: 119 KGLDHL--------------ANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN 164
GL L L++L + N+++ + +L L +N++ +
Sbjct: 121 SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP--ALPSELCKLWAYNNQLTSLPM 178
Query: 165 LDGLTNLEELYLGKNKISRI-DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSEN 223
L + L+EL + N+++ + + L KL + NRL ++ L + L +L +S N
Sbjct: 179 L--PSGLQELSVSDNQLASLPTLPSELYKLWAYN---NRLTSLPAL--PSGLKELIVSGN 231
Query: 224 GLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQ 283
LT++ L S L+ L V+ N+++ + + L + NQ++ L +
Sbjct: 232 RLTSLPVLPSE--LKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLP--ESLIHLSS 285
Query: 284 LQTIYLDRNPVAQDPNYRRK 303
T+ L+ NP+++ +
Sbjct: 286 ETTVNLEGNPLSERTLQALR 305
Score = 94.2 bits (234), Expect = 2e-21
Identities = 47/257 (18%), Positives = 104/257 (40%), Gaps = 26/257 (10%)
Query: 40 EESEAETTESKAEDEESKEVCIERLLLRWNL-IKKIENI--HMLTTLKELELYDNQLTVI 96
+ AE + +A + C+ N+ + + + + L + DN LT +
Sbjct: 17 RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSL 76
Query: 97 ENLDTLINLEILDLSFNRIREI-KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELG 155
L L L++S N++ + L L + + L L +
Sbjct: 77 PAL--PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIF 129
Query: 156 DNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNL 215
N++ + L L+EL + N+++ + A ++L L N+L ++ L + L
Sbjct: 130 GNQLTSLPVL--PPGLQELSVSDNQLASLP--ALPSELCKLWAYNNQLTSLPML--PSGL 183
Query: 216 TQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTV 275
+L +S+N L ++ L S L L N+++ + A + L+E ++ N+++
Sbjct: 184 QELSVSDNQLASLPTLPSE--LYKLWAYNNRLTSLP--ALPSGLKELIVSGNRLT----- 234
Query: 276 NVLENNKQLQTIYLDRN 292
++ +L+ + + N
Sbjct: 235 SLPVLPSELKELMVSGN 251
Score = 91.1 bits (226), Expect = 1e-20
Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 15/227 (6%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
++ L + N + + + + L +L Y+NQLT + L L+ L +S N++ +
Sbjct: 143 LQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLPML--PSGLQELSVSDNQLASLP- 197
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
+ L KL+ +N+++ + LK L + N++ + L + L+EL + N+
Sbjct: 198 -TLPSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNR 252
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
++ + L + L LS+ N+L + E+L L++ T + L N L+ ++ +
Sbjct: 253 LTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR-EITS 309
Query: 240 LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT 286
I I ++A + +E +DW
Sbjct: 310 APGYSGPI-IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355
Score = 53.7 bits (129), Expect = 4e-08
Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 14/133 (10%)
Query: 168 LTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT 227
L +G++ ++ + + + L + N L ++ L L +S N LT+
Sbjct: 39 NNGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS 95
Query: 228 IENLLSN-EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT 286
+ L +L + + + L + WI NQ++ + LQ
Sbjct: 96 LPVLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTS-----LPVLPPGLQE 145
Query: 287 IYLDRNPVAQDPN 299
+ + N +A P
Sbjct: 146 LSVSDNQLASLPA 158
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 94.7 bits (236), Expect = 4e-24
Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Query: 186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYN 245
+ + +L + + + N + + L L GLT+I NL KL+ L+++ N
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN 74
Query: 246 KISIIQNI--AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRK 303
++S + L ++ N++ D +T+ L+ + L+++ L V +YR
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN 134
Query: 304 IKLVCPWIVQID 315
+ + P + +D
Sbjct: 135 VFKLLPQLTYLD 146
Score = 75.1 bits (185), Expect = 9e-17
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 80 LTTLKELELYDNQLTVIE---NLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNK 136
+ +KEL L +++ + D LE L + I L L L+KL L N+
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR 75
Query: 137 ISKIENV--DHLKKLKVLELGDNKIR---IIENLDGLTNLEELYLGKNKISRIDN 186
+S V + L L L NKI+ IE L L NL+ L L +++ +++
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Score = 72.0 bits (177), Expect = 1e-15
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 10/132 (7%)
Query: 97 ENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGD 156
+ L + + N + D LE L + ++ I N+ L KLK LEL D
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSD 73
Query: 157 NKIRIIENL--DGLTNLEELYLGKNKISR---IDNLASLTKLNILSLQCNRLRTIEN--- 208
N++ + + NL L L NKI I+ L L L L L + + +
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE 133
Query: 209 --LEALTNLTQL 218
+ L LT L
Sbjct: 134 NVFKLLPQLTYL 145
Score = 57.4 bits (139), Expect = 2e-10
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENL--DTLINLEILDLSFNRIREI 118
+E L + I N+ L LK+LEL DN+++ + + NL L+LS N+I+++
Sbjct: 44 LEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103
Query: 119 KGLDHLA---NLEKLYLCSNKISKIEN-----VDHLKKLKVL 152
++ L NL+ L L + +++ + + L +L L
Sbjct: 104 STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 100 bits (251), Expect = 7e-24
Identities = 51/258 (19%), Positives = 95/258 (36%), Gaps = 22/258 (8%)
Query: 57 KEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD-------TLINLEILD 109
+ + + WN +I + TT+ + + +L + +L L I
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282
Query: 110 LSFNRIREIKGL--DHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRII--E 163
+ + + + +N+ + + + + L+ +N + E
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342
Query: 164 NLDGLTNLEELYLGKNKISRIDNLAS----LTKLNILSLQCNRLRTIENLEA---LTNLT 216
N LT LE L L N++ + +A + L L + N + E +L
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402
Query: 217 QLYLSENGLTTIENLLSNEKLETLDVAYNKI-SIIQNIAHLTELQEFWINDNQVSDWNTV 275
L +S N LT +++ LD+ NKI SI + + L LQE + NQ+
Sbjct: 403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD- 461
Query: 276 NVLENNKQLQTIYLDRNP 293
+ + LQ I+L NP
Sbjct: 462 GIFDRLTSLQKIWLHTNP 479
Score = 92.6 bits (230), Expect = 3e-21
Identities = 38/246 (15%), Positives = 93/246 (37%), Gaps = 14/246 (5%)
Query: 14 NDNLVTLNVEAVENTHGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKK 73
N ++ V +T S+ N + + + + K + I +++ +
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292
Query: 74 IENIHMLTTLKELELYDNQLTVIENL--DTLINLEILDLSFNRIREI--KGLDHLANLEK 129
+ + + + ++ L + LD S N + + + HL LE
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352
Query: 130 LYLCSNKISKIENV----DHLKKLKVLELGDNKIRIIEN---LDGLTNLEELYLGKNKIS 182
L L N++ ++ + +K L+ L++ N + E +L L + N ++
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412
Query: 183 RIDNLASLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTTIEN--LLSNEKLET 239
++ +L L N++++I + + L L +L ++ N L ++ + L+
Sbjct: 413 DTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472
Query: 240 LDVAYN 245
+ + N
Sbjct: 473 IWLHTN 478
Score = 86.5 bits (214), Expect = 4e-19
Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 12/193 (6%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
L + N ++ + + +L L IL +S NRI+ + LE L L NK
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 137 ISKIENVDHLKKLKVLELGDNKIRII---ENLDGLTNLEELYLGKNKISRID--NLASLT 191
+ KI + LK L+L N + + ++ L+ L L + + +A L
Sbjct: 81 LVKI-SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 192 KLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT--TIENLLSNEKLETLDVAYNKISI 249
+L + E+ E L + L T +L ++ + I
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199
Query: 250 IQNIAHLTELQEF 262
+ +
Sbjct: 200 VLEDNKCSYFLSI 212
Score = 80.7 bits (199), Expect = 4e-17
Identities = 43/248 (17%), Positives = 92/248 (37%), Gaps = 17/248 (6%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
L + N I ++ I L+ L+ L + N++ ++ LE LDLS N++
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 117 EIKGLDHLANLEKLYLCSNKISKI---ENVDHLKKLKVLELGDNKIRII--ENLDGLTNL 171
+I NL+ L L N + + ++ +LK L L + + L
Sbjct: 83 KIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS 141
Query: 172 EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENL 231
+ L + ++ L N SL T + + +++ ++ L+ I+ +
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFP-TNKEFHFILDVSVKTVANLELSNIKCV 200
Query: 232 LSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDR 291
L + K +SI+ + +L +N+ + + + + +L+ Y
Sbjct: 201 LEDNKCSYF------LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254
Query: 292 NPVAQDPN 299
+ V
Sbjct: 255 SNVKLQGQ 262
Score = 73.4 bits (180), Expect = 1e-14
Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 13/185 (7%)
Query: 107 ILDLSFNRIREI-KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIE 163
++D S N + + K L L + N IS++ + L KL++L + N+I+ ++
Sbjct: 4 LVDRSKNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 164 N--LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEA---LTNLTQL 218
LE L L NK+ +I + L L L N + + ++ L L
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVKI-SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120
Query: 219 YLSENGLTTI--ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVN 276
LS L + + L V ++ L + ++ ++
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180
Query: 277 VLENN 281
+L+ +
Sbjct: 181 ILDVS 185
Score = 66.4 bits (162), Expect = 2e-12
Identities = 37/249 (14%), Positives = 81/249 (32%), Gaps = 27/249 (10%)
Query: 64 LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
L + IK + + + + + NL L ++ ++N I L
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT----LNNIETTWNSFIRILQLVW 245
Query: 124 LANLEKLYLCSNKISKIENVDH-------LKKLKVLELGDNKIRIIENL--DGLTNLEEL 174
+ + + K+ + LK L + ++ + ++ + +N+
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305
Query: 175 YLGKNKISRIDNLA--SLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIEN 230
+ + L ++ L N L EN LT L L L N L +
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365
Query: 231 L----LSNEKLETLDVAYNKISIIQNIA---HLTELQEFWINDNQVSDWNTVNVLENNKQ 283
+ + L+ LD++ N +S + L ++ N ++D +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--- 422
Query: 284 LQTIYLDRN 292
++ + L N
Sbjct: 423 IKVLDLHSN 431
Score = 54.5 bits (131), Expect = 2e-08
Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 27/128 (21%)
Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
L + +N IS + + SL+KL IL + NR++ ++ + L L LS N
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 225 LTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQL 284
L I + L+ ++ N N QL
Sbjct: 81 LVKI-----------------------SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117
Query: 285 QTIYLDRN 292
+ + L
Sbjct: 118 KFLGLSTT 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 95.9 bits (239), Expect = 1e-23
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 104 NLEILDLSFNRIREIK---GLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNK 158
L L+ N ++ L L K+ +NKI+ IE + + + L N+
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 159 IRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEAL 212
+ +++ GL +L+ L L N+I+ + N + L+ + +LSL N++ T+ + L
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 213 TNLTQLYLSEN 223
+L+ L L N
Sbjct: 153 HSLSTLNLLAN 163
Score = 83.9 bits (208), Expect = 2e-19
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 125 ANLEKLYLCSNKISKIENV---DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
+L L +N+ + +E L +L+ + +NKI IE +G + + E+ L N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 180 KISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI 228
++ + + L L L L+ NR+ + N L+++ L L +N +TT+
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144
Score = 67.8 bits (166), Expect = 2e-13
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
++ N I IE + + E+ L N+L +++ L +L+ L L NRI
Sbjct: 60 RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119
Query: 118 IKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
+ L+++ L L N+I+ + D L L L L N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 51.6 bits (124), Expect = 6e-08
Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 52/155 (33%)
Query: 169 TNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI 228
EL L N+ + ++ KL L ++ S N +T I
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKL-------------------PQLRKINFSNNKITDI 72
Query: 229 E-------------NLLSNE-------------KLETLDVAYNKISIIQNIA--HLTELQ 260
E L SN L+TL + N+I+ + N + L+ ++
Sbjct: 73 EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132
Query: 261 EFWINDNQVSDWNTV--NVLENNKQLQTIYLDRNP 293
+ DNQ++ TV + L T+ L NP
Sbjct: 133 LLSLYDNQIT---TVAPGAFDTLHSLSTLNLLANP 164
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 93.3 bits (232), Expect = 3e-23
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYN 245
A++ +L + + + N + NL L L GL ++ NL KL+ L+++ N
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN 81
Query: 246 KISIIQNI--AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRK 303
+I ++ L L ++ N++ D +T+ L+ + L+++ L V +YR
Sbjct: 82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141
Query: 304 IKLVCPWIVQID 315
+ + P + +D
Sbjct: 142 VFKLLPQLTYLD 153
Score = 73.2 bits (180), Expect = 6e-16
Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 10/140 (7%)
Query: 67 RWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLAN 126
R +L + + L N + +NLE L L + + L L
Sbjct: 13 RIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPK 72
Query: 127 LEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIR---IIENLDGLTNLEELYLGKNKI 181
L+KL L N+I + + L L L L NK++ +E L L L+ L L ++
Sbjct: 73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132
Query: 182 SRIDN-----LASLTKLNIL 196
+ +++ L +L L
Sbjct: 133 TNLNDYRESVFKLLPQLTYL 152
Score = 70.9 bits (174), Expect = 5e-15
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 113 NRIREIKGLDHLANLEKLYL--CSNKISKIENV-DHLKKLKVLELGDNKIRIIENLDGLT 169
RI A + +L L C + KIE + L+ L L + + + NL L
Sbjct: 12 RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP 71
Query: 170 NLEELYLGKNKISRIDNL--ASLTKLNILSLQCNR---LRTIENLEALTNLTQLYLSENG 224
L++L L +N+I ++ L L L+L N+ + T+E L+ L L L L
Sbjct: 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131
Query: 225 LTTIEN 230
+T + +
Sbjct: 132 VTNLND 137
Score = 57.8 bits (140), Expect = 2e-10
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENL--DTLINLEILDLSFNRIREI 118
+E L L + + N+ L LK+LEL +N++ ++ + L NL L+LS N++++I
Sbjct: 51 LEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110
Query: 119 KGLDHLA---NLEKLYLCSNKISKIEN-----VDHLKKLKVLELGDNKIR 160
L+ L L+ L L + +++ + + L +L L+ D + +
Sbjct: 111 STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 92.3 bits (230), Expect = 1e-21
Identities = 40/208 (19%), Positives = 84/208 (40%), Gaps = 21/208 (10%)
Query: 62 ERLLLRWNLIKKI-ENIHMLTTLKELELYDNQLTVI-ENLDTLINLEILDLS-FNRIREI 118
+ + + + ++ + + L+ L L N L + ++ +L L L + + E+
Sbjct: 107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166
Query: 119 ----------KGLDHLANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRII-ENLD 166
L NL+ L L I + ++ +L+ LK L++ ++ + + +
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226
Query: 167 GLTNLEELYL-GKNKISRI-DNLASLTKLNILSLQ-CNRLRTI-ENLEALTNLTQLYLSE 222
L LEEL L G + L L L+ C+ L T+ ++ LT L +L L
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
Query: 223 N-GLTTIENLLSN-EKLETLDVAYNKIS 248
L+ + +L++ + V + +
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQA 314
Score = 86.9 bits (216), Expect = 1e-19
Identities = 37/208 (17%), Positives = 78/208 (37%), Gaps = 20/208 (9%)
Query: 80 LTTLKELELYDNQL-TVIENLDTLINLEILDLSFNRIREI---KGLDHLANLEKLYLCSN 135
L+ + D N +I + ++ L L S
Sbjct: 32 LSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV 91
Query: 136 KISKI-ENVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRI-DNLASLTK 192
+ + + L L+ + + + + + + LE L L +N + + ++ASL +
Sbjct: 92 PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151
Query: 193 LNILSLQ-CNRLRTI----------ENLEALTNLTQLYLSENGLTTIENLLSN-EKLETL 240
L LS++ C L + + L NL L L G+ ++ ++N + L++L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 241 DVAYNKISII-QNIAHLTELQEFWINDN 267
+ + +S + I HL +L+E +
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGC 239
Score = 80.0 bits (198), Expect = 2e-17
Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 22/214 (10%)
Query: 75 ENIHMLTTLKELELYD-NQLT-VIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYL 132
+ H + + L L + L D NR + N +
Sbjct: 6 HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR--NRWHSAWRQANSNNPQIETR 63
Query: 133 CSNKISKIENV---DHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRI-DNL 187
+ ++ LEL + + L++L+ + + + + D +
Sbjct: 64 TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM 123
Query: 188 ASLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSE-NGLTTIENLLSN----------E 235
L L+L N LR + ++ +L L +L + LT + L++
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 236 KLETLDVAYNKISII-QNIAHLTELQEFWINDNQ 268
L++L + + I + +IA+L L+ I ++
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP 217
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 88.9 bits (221), Expect = 3e-21
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 125 ANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNK 180
+ ++ L N I I KKL+ ++L +N+I + GL +L L L NK
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 181 ISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSN 234
I+ + L L +L L N++ + + L NL L L +N L TI
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 235 EKLETLDVAYN 245
++T+ +A N
Sbjct: 152 RAIQTMHLAQN 162
Score = 88.2 bits (219), Expect = 8e-21
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 28/151 (18%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
T+ E+ L N + VI L +DLS N+I E+ L +L L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90
Query: 137 ISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA--SLTKLN 194
K+ L +GL +L+ L L NKI+ + A L LN
Sbjct: 91 -----------KITELPKSL--------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131
Query: 195 ILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
+LSL N+L+TI L + ++L++N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 85.1 bits (211), Expect = 1e-19
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 62 ERLLLRWNLIKKIENI--HMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
+ L N IK I L+ ++L +NQ++ + L +L L L N+I E
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 118 IKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNL 171
+ + L +L+ L L +NKI+ + L L +L L DNK++ I L +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 172 EELYLGKN 179
+ ++L +N
Sbjct: 155 QTMHLAQN 162
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 89.8 bits (223), Expect = 3e-21
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
++L+L L + + L L L+L +N+++ + D L L L L +N+
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SL 190
++ + DHL +L L LG N+++ + + D LT L+EL L N++ I A L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
T L LSL N+L+++ + + L L + L N
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 72.4 bits (178), Expect = 6e-15
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRT 205
+ L+L + + + GLT L L L N++ + LT+L L L N+L +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 206 IENL--EALTNLTQLYLSENGLTTIEN----LLSNEKLETLDVAYNKISIIQNIA--HLT 257
+ + LT L +LYL N L ++ + L+ L+ L + N++ I A LT
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK--LKELRLNTNQLQSIPAGAFDKLT 155
Query: 258 ELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
LQ ++ NQ+ + +LQTI L N
Sbjct: 156 NLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQ 190
Score = 70.1 bits (172), Expect = 3e-14
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 80 LTTLKELELYDNQLTVIENL--DTLINLEILDLSFNRIREI-KGL-DHLANLEKLYLCSN 135
LT L L L +NQL + D L L+ L L N+++ + G+ D L L++L L +N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 136 KISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
++ I D L L+ L L N+++ + + D L L+ + L N
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 57.8 bits (140), Expect = 6e-10
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
L L N + + LT L +L L NQL + + D L L+ L L+ N+++
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 118 I-KGL-DHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
I G D L NL+ L L +N++ + + D L KL+ + L N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 92.6 bits (230), Expect = 4e-21
Identities = 50/254 (19%), Positives = 86/254 (33%), Gaps = 22/254 (8%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD-------TLINLEILDLSFN 113
++ + W K+ ++ L +Y+ +T + + L +L I +
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315
Query: 114 RIREIKGL--DHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIE--NLDG 167
K A + L + I V L N
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST 375
Query: 168 LTNLEELYLGKNKISRI----DNLASLTKLNILSLQCNRLRTIEN---LEALTNLTQLYL 220
L L+ L L +N + +++ L L + N L + ++ L L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 221 SENGLTTIENLLSNEKLETLDVAYNKISII-QNIAHLTELQEFWINDNQVSDWNTVNVLE 279
S N LT K++ LD+ N+I I +++ HL LQE + NQ+ V +
Sbjct: 436 SSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV-PDGVFD 494
Query: 280 NNKQLQTIYLDRNP 293
LQ I+L NP
Sbjct: 495 RLTSLQYIWLHDNP 508
Score = 84.5 bits (209), Expect = 2e-18
Identities = 46/232 (19%), Positives = 87/232 (37%), Gaps = 23/232 (9%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
K L L N ++ + + L L +L LS NRIR + +LE L + N+
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 137 ISKIENVDHLKKLKVLELGDNKIRII---ENLDGLTNLEELYLGKNKISRID--NLASLT 191
+ I + + L+ L+L N ++ + LT L L L K ++D +A L
Sbjct: 112 LQNI-SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170
Query: 192 ----KLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKI 247
L+++S T T + L N L +++ +S L L ++ K+
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230
Query: 248 ---------SIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLD 290
+ + + L + + + +V + + YL+
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282
Score = 76.4 bits (188), Expect = 1e-15
Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 31/265 (11%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
+ L L N I ++ I L+ L+ L L N++ ++ +LE LD+S NR++
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 117 EIKGLDHLANLEKLYLCSNKISKI---ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEE 173
I +A+L L L N + + +L KL L L K R + +L + +L
Sbjct: 114 NIS-CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHLHL 171
Query: 174 ----LYLGKNKISRIDNLA---SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT 226
L L I + + T + L N L +++ ++ L L LS L
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231
Query: 227 TIEN--------------LLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD- 271
L N L+ ++ + + ++ I + +++
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291
Query: 272 WNTVNVLENNKQLQTIYLDRNPVAQ 296
+ + L+++ ++
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQV 316
Score = 53.7 bits (129), Expect = 3e-08
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLL--SNEKLETLDVAYNK 246
+ LSL N + + + L+ L L LS N + +++ + N+ LE LDV++N+
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 247 ISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+ I + L+ ++ N N +L + L
Sbjct: 112 LQNIS-CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 85.4 bits (212), Expect = 9e-20
Identities = 38/210 (18%), Positives = 87/210 (41%), Gaps = 22/210 (10%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSN-KI 137
++ + + I +L + + L L +R I +L N+ ++Y+ + +
Sbjct: 11 HQEEDFRVTCKDIQRIPSLPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68
Query: 138 SKIENV--DHLKKLKVLELGDNK-IRIIEN--LDGLTNLEELYLGKNKISRIDN---LAS 189
++E+ +L K+ +E+ + + + I+ L L L+ L + + + + S
Sbjct: 69 QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128
Query: 190 LTKLNILSLQCN-RLRTIEN--LEALTNLTQ-LYLSENGLTTIE-NLLSNEKLETLDVAY 244
IL + N + +I + L N T L L NG T+++ + KL+ + +
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188
Query: 245 NK-ISIIQNIA---HLTELQEFWINDNQVS 270
NK +++I A + ++ V+
Sbjct: 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218
Score = 85.1 bits (211), Expect = 1e-19
Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 20/188 (10%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDN-QLTVIEN--LDTLINLEILDLSFNR- 114
+ L L ++ I + L + + + + L +E+ L + +++ R
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92
Query: 115 IREIKG--LDHLANLEKLYLCSNKISKIEN---VDHLKKLKVLELGDN-KIRIIEN--LD 166
+ I L L L+ L + + + + V +LE+ DN + I
Sbjct: 93 LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152
Query: 167 GLTN-LEELYLGKNKISRIDNLA-SLTKLNILSLQCNR-LRTIEN---LEALTNLTQLYL 220
GL N L L N + + A + TKL+ + L N+ L I+ + + L +
Sbjct: 153 GLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212
Query: 221 SENGLTTI 228
S+ +T +
Sbjct: 213 SQTSVTAL 220
Score = 83.9 bits (208), Expect = 3e-19
Identities = 36/206 (17%), Positives = 84/206 (40%), Gaps = 26/206 (12%)
Query: 79 MLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFN-RIREIKG--LDHLANLEKLYLC 133
+ + + L+L + L I + L N+ + +S + +++++ +L+ + + +
Sbjct: 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88
Query: 134 SNK-ISKIENV--DHLKKLKVLELGDNKIRIIEN---LDGLTNLEELYLGKN-KISRIDN 186
+ + ++ I+ L LK L + + +++ + + L + N ++ I
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 187 --LASLTK-LNILSLQCNRLRTIE-NLEALTNLTQLYLSEN-GLTTIE-----NLLSNEK 236
L L L N +++ T L +YL++N LT I+ + S
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG-- 206
Query: 237 LETLDVAYNKISIIQNIA--HLTELQ 260
LDV+ ++ + + HL EL
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELI 232
Score = 62.3 bits (152), Expect = 2e-11
Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Query: 80 LTTLKELELYDNQLTVIEN---LDTLINLEILDLSFN-RIREIKG--LDHLAN-LEKLYL 132
L LK L +++ L + + + + IL+++ N + I L N L L
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163
Query: 133 CSNKISKIE-NVDHLKKLKVLELGDNK-IRIIEN--LDGL-TNLEELYLGKNKISRI--D 185
+N + ++ + KL + L NK + +I+ G+ + L + + ++ +
Sbjct: 164 YNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223
Query: 186 NLASLTKLNILSL 198
L L +L +
Sbjct: 224 GLEHLKELIARNT 236
Score = 48.1 bits (115), Expect = 9e-07
Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 10/133 (7%)
Query: 169 TNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG-L 225
E+ + I RI +L L L LRTI + L N++++Y+S + L
Sbjct: 11 HQEEDFRVTCKDIQRIPSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68
Query: 226 TTIEN--LLSNEKLETLDVAYNK-ISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLEN 280
+E+ + K+ +++ + ++ I A L L+ I + + + + + +
Sbjct: 69 QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128
Query: 281 NKQLQTIYLDRNP 293
+ + NP
Sbjct: 129 TDIFFILEITDNP 141
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 86.9 bits (215), Expect = 4e-19
Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 20/227 (8%)
Query: 80 LTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI-KGLDHLANLEKLYLCSNKIS 138
N+ + + L L+ + + L + L + N +
Sbjct: 36 WEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI 93
Query: 139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
+ + L+ L+ DN++ + L +L+ L + N+++ + L L ++
Sbjct: 94 SLP--ELPASLEYLDACDNRLSTLPEL--PASLKHLDVDNNQLTMLPEL--PALLEYINA 147
Query: 199 QCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKI-----SIIQNI 253
N+L + E T+L L + N LT + L + LE LDV+ N + ++N
Sbjct: 148 DNNQLTML--PELPTSLEVLSVRNNQLTFLPELPES--LEALDVSTNLLESLPAVPVRNH 203
Query: 254 AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
F +N+++ + + TI L+ NP++
Sbjct: 204 HSEETEIFFRCRENRITHIP--ENILSLDPTCTIILEDNPLSSRIRE 248
Score = 43.0 bits (101), Expect = 9e-05
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 187 LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYN 245
K + N ++ + ++L L+ L+++ +NL + L++ N
Sbjct: 33 WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQ--ITVLEITQN 90
Query: 246 KISII-QNIAHLTEL 259
+ + + A L L
Sbjct: 91 ALISLPELPASLEYL 105
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 81.8 bits (203), Expect = 6e-18
Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 21/189 (11%)
Query: 77 IHMLTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRIR-EI-KGLDHLANLEKLYL 132
I LT L L + ++ + + L + L LD S+N + + + L NL +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 133 CSNKIS-KI-ENVDHLKKL-KVLELGDNKI-----RIIENLDGLTNLEELYLGKNKIS-R 183
N+IS I ++ KL + + N++ NL NL + L +N +
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----NLAFVDLSRNMLEGD 212
Query: 184 I-DNLASLTKLNILSLQCNRLR-TIENLEALTNLTQLYLSENGLT-TIENLLSN-EKLET 239
S + L N L + + NL L L N + T+ L+ + L +
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 240 LDVAYNKIS 248
L+V++N +
Sbjct: 273 LNVSFNNLC 281
Score = 74.5 bits (184), Expect = 2e-15
Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 18/187 (9%)
Query: 75 ENIHMLTTLKELELYDNQLT-VI-ENLDTLINLEILDLSFNRI-----REIKGLDHLANL 127
+ + + TL L+ N L+ + ++ +L NL + NRI L
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL--F 176
Query: 128 EKLYLCSNKIS-KI-ENVDHLKKLKVLELGDNKI--RIIENLDGLTNLEELYLGKNKIS- 182
+ + N+++ KI +L L ++L N + N ++++L KN ++
Sbjct: 177 TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235
Query: 183 RIDNLASLTKLNILSLQCNRLR-TI-ENLEALTNLTQLYLSENGLT-TIENLLSNEKLET 239
+ + LN L L+ NR+ T+ + L L L L +S N L I + ++ +
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295
Query: 240 LDVAYNK 246
A NK
Sbjct: 296 SAYANNK 302
Score = 55.6 bits (135), Expect = 5e-09
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 145 HLKKLKVLELGDNKIR----IIENLDGLTNLEELYL-GKNKIS-RI-DNLASLTKLNILS 197
++ L+L + I +L L L LY+ G N + I +A LT+L+ L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 198 LQCNRLR-TI-ENLEALTNLTQLYLSENGLT-TIENLLSN-EKLETLDVAYNKIS--IIQ 251
+ + I + L + L L S N L+ T+ +S+ L + N+IS I
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 252 NIAHLTELQEF-WINDNQVS 270
+ ++L I+ N+++
Sbjct: 168 SYGSFSKLFTSMTISRNRLT 187
Score = 40.6 bits (96), Expect = 4e-04
Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 24/124 (19%)
Query: 185 DNLASLTKLNILSLQCNRLR---TI-ENLEALTNLTQLYLS-ENGLT-----TIENLLSN 234
D ++N L L L I +L L L LY+ N L I L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL--- 100
Query: 235 EKLETLDVAYNKIS--IIQNIAHLTELQEFWINDNQVS----DWNTVNVLENNKQLQTIY 288
+L L + + +S I ++ + L + N +S + + L I
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-----ISSLPNLVGIT 155
Query: 289 LDRN 292
D N
Sbjct: 156 FDGN 159
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 81.1 bits (200), Expect = 1e-17
Identities = 52/283 (18%), Positives = 92/283 (32%), Gaps = 27/283 (9%)
Query: 15 DNLVTLNVEAVENTHGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKI 74
+ L +VE + L D E++ + K + + + ++
Sbjct: 29 NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88
Query: 75 ENIHMLTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRIREIKGLDHLA------- 125
+ ++ L+EL L + ++T L ++ L+ + LA
Sbjct: 89 LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148
Query: 126 -NLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIENL------DGLTNLEELYL 176
L+ L + E V L L+L DN L L+ L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208
Query: 177 GKNKISRIDN-----LASLTKLNILSLQCNRLRTIENLEA---LTNLTQLYLSENGLTTI 228
+ A+ +L L L N LR + + L L LS GL +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268
Query: 229 ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271
L KL LD++YN++ + L ++ + N D
Sbjct: 269 PKGLP-AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310
Score = 71.9 bits (176), Expect = 2e-14
Identities = 37/168 (22%), Positives = 58/168 (34%), Gaps = 17/168 (10%)
Query: 78 HMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKGLDH------LANLEK 129
+ LK L + E + L LDLS N +GL L+
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205
Query: 130 LYLCSNKISKIENVD-----HLKKLKVLELGDNKIRII---ENLDGLTNLEELYLGKNKI 181
L L + + V +L+ L+L N +R + D + L L L +
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265
Query: 182 SRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE 229
++ KL++L L NRL + + L + L L N E
Sbjct: 266 KQVPK-GLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDSE 312
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 74.3 bits (183), Expect = 4e-16
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 125 ANLEKLYLCSNKISKIENV---DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
+ +L L N++ +I + L L LEL N++ IE +G ++++EL LG+N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 180 KISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
KI I N L +L L+L N++ + E L +LT L L+ N
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 73.5 bits (181), Expect = 9e-16
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 106 EILDLSFNRIREIKG---LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIR 160
L L+ N + I L +L KL L N+++ IE + ++ L+LG+NKI+
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 161 IIEN--LDGLTNLEELYLGKNKISRI-----DNLASLTKLNILS 197
I N GL L+ L L N+IS + ++L SLT LN+ S
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135
Score = 63.5 bits (155), Expect = 3e-12
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 62 ERLLLRWNLIKKIENI---HMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
LLL N + +I + L L +LEL NQLT IE + +++ L L N+I+
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 117 EI-KGL-DHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
EI + L L+ L L N+IS + +HL L L L N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 50.8 bits (122), Expect = 8e-08
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 195 ILSLQCNRLRTIEN---LEALTNLTQLYLSENGLTTIENLL--SNEKLETLDVAYNKISI 249
L L N L I + L +L +L L N LT IE ++ L + NKI
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 250 IQNIA--HLTELQEFWINDNQVSDWNTV--NVLENNKQLQTIYLDRNP 293
I N L +L+ + DNQ+S V E+ L ++ L NP
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQIS---CVMPGSFEHLNSLTSLNLASNP 137
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 74.0 bits (182), Expect = 1e-15
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 12/125 (9%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI-KGL-DHLANLEKLYLCSNK 136
T + L L+DNQ+T +E D+LINL+ L L N++ + G+ D L L L L +N+
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRI-----DNLA 188
++ + + D L LK L + NK+ + ++ LT+L L L +N++ I D L+
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 189 SLTKL 193
SLT
Sbjct: 160 SLTHA 164
Score = 61.3 bits (149), Expect = 3e-11
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRT 205
++L L DN+I +E D L NL+ELYLG N++ + SLT+L +L L N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 206 IEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFW 263
+ + + L +L +L++ N LT + + I LT L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT---------------------ELPRGIERLTHLTHLA 141
Query: 264 INDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
++ NQ+ + L YL NP
Sbjct: 142 LDQNQLKSIPH-GAFDRLSSLTHAYLFGNP 170
Score = 57.8 bits (140), Expect = 4e-10
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 80 LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI-KGLDHLANLEKLYLCSNK 136
LT L L+L NQLTV+ + D L++L+ L + N++ E+ +G++ L +L L L N+
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146
Query: 137 ISKIENV--DHLKKLKVLELGDN 157
+ I + D L L L N
Sbjct: 147 LKSIPHGAFDRLSSLTHAYLFGN 169
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 71.2 bits (175), Expect = 6e-15
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI-KGL-DHLANLEKLYLCSNK 136
L+L N L + N D L +L L L N+++ + G+ + L +L L L +N+
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DNL 187
+ + N D L +LK L L N+++ + + D LT L++L L +N++ + D L
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 188 ASLTKL 193
SL +
Sbjct: 148 TSLQYI 153
Score = 60.8 bits (148), Expect = 3e-11
Identities = 42/177 (23%), Positives = 67/177 (37%), Gaps = 53/177 (29%)
Query: 125 ANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNK 180
A L L +N + + N D L L L LG NK++ + N + LT+L L L N+
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 181 ISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEK 236
+ + N LT+L L+L N+L+++ + + LT L L L +N L ++ +
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------ 141
Query: 237 LETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
V + LQ I+L NP
Sbjct: 142 ---------------------------------------GVFDRLTSLQYIWLHDNP 159
Score = 53.5 bits (129), Expect = 1e-08
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 80 LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI-KGL-DHLANLEKLYLCSN 135
LT+L L L NQL + N D L L+ L L+ N+++ + G+ D L L+ L L N
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 136 KISKIEN--VDHLKKLKVLELGDN 157
++ + + D L L+ + L DN
Sbjct: 135 QLKSVPDGVFDRLTSLQYIWLHDN 158
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 70.8 bits (174), Expect = 8e-15
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 106 EILDLSFNRIREIKG-LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRII 162
L L N+ + L + +L + L +N+IS + N ++ +L L L N++R I
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 163 EN--LDGLTNLEELYLGKNKISRI-----DNLASLTKL 193
DGL +L L L N IS + ++L++L+ L
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
Score = 58.5 bits (142), Expect = 2e-10
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 28/130 (21%)
Query: 169 TNLEELYLGKNKISRIDN-LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGL 225
++ ELYL N+ + + L++ L ++ L NR+ T+ N +T L L LS N L
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 226 TTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTV--NVLENNKQ 283
I ++ L L+ ++ N +S V +
Sbjct: 91 RCIPPR-----------TFDG---------LKSLRLLSLHGNDIS---VVPEGAFNDLSA 127
Query: 284 LQTIYLDRNP 293
L + + NP
Sbjct: 128 LSHLAIGANP 137
Score = 46.1 bits (110), Expect = 3e-06
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 63 RLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI 118
+ L N I + N +T L L L N+L I D L +L +L L N I +
Sbjct: 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117
Query: 119 -KGL-DHLANLEKLYLCSN 135
+G + L+ L L + +N
Sbjct: 118 PEGAFNDLSALSHLAIGAN 136
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 70.5 bits (173), Expect = 7e-14
Identities = 50/284 (17%), Positives = 93/284 (32%), Gaps = 72/284 (25%)
Query: 81 TTLKELELYDNQLTVIEN------------LDTLINLEILDLSFNRIREI------KGLD 122
L+ E D +++ L L + LS N L
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119
Query: 123 HLANLEKLYLCSNKIS---------------KIENVDHLKKLKVLELGDNKIR------I 161
LE LYL +N + + + L+ + G N++
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179
Query: 162 IENLDGLTNLEELYLGKNKISRI-------DNLASLTKLNILSLQCNRLRTI------EN 208
+ L + + +N I + LA +L +L LQ N +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239
Query: 209 LEALTNLTQLYLSENGLTTIE--------NLLSNEKLETLDVAYNKISI--IQNIA---- 254
L++ NL +L L++ L+ + L N L+TL + YN+I + ++ +
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299
Query: 255 -HLTELQEFWINDNQVSDWNTV-----NVLENNKQLQTIYLDRN 292
+ +L +N N+ S+ + V V + + LD
Sbjct: 300 EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343
Score = 65.5 bits (160), Expect = 3e-12
Identities = 41/259 (15%), Positives = 85/259 (32%), Gaps = 53/259 (20%)
Query: 82 TLKELELYDNQLT------VIENLDTLINLEILDLSFNRIREI------KGLDHLANLEK 129
+++ L + +T V L +++ + LS N I + + +LE
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 130 LYLCSNKISKIENVD------------HLKKLKVLELGDNKIR------IIENLDGLTNL 171
++++ KL + L DN +I+ L T L
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124
Query: 172 EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI--- 228
E LYL N + + ++ L + + L + N L
Sbjct: 125 EHLYLHNNGLG--PQAGA-----KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177
Query: 229 ---ENLLSNEKLETLDVAYNKIS-------IIQNIAHLTELQEFWINDNQVSD---WNTV 275
+ S+ L T+ + N I +++ +A+ EL+ + DN +
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237
Query: 276 NVLENNKQLQTIYLDRNPV 294
L++ L+ + L+ +
Sbjct: 238 IALKSWPNLRELGLNDCLL 256
Score = 64.0 bits (156), Expect = 1e-11
Identities = 49/310 (15%), Positives = 91/310 (29%), Gaps = 80/310 (25%)
Query: 61 IERLLLRWNLIKK------IENIHMLTTLKELELYDNQLTVI------ENLDTLINLEIL 108
IE L+ + I + ++KE+ L N + EN+ + +LEI
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 109 DLSFNRIREI------------KGLDHLANLEKLYLCSNKISKI------ENVDHLKKLK 150
+ S + + L L + L N + + L+
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 151 VLELGDNKI---------------RIIENLDGLTNLEELYLGKNKISRI------DNLAS 189
L L +N + + + L + G+N++ S
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185
Query: 190 LTKLNILSLQCNRLRTI-------ENLEALTNLTQLYLSENGLTTI------ENLLSNEK 236
L+ + + N +R E L L L L +N T + L S
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245
Query: 237 LETLDVAYNKI---------SIIQNIAHLTELQEFWINDNQVSDWNTVNVL-----ENNK 282
L L + + + ++ LQ + N++ + V L E
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIEL-DAVRTLKTVIDEKMP 303
Query: 283 QLQTIYLDRN 292
L + L+ N
Sbjct: 304 DLLFLELNGN 313
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 69.2 bits (170), Expect = 2e-13
Identities = 51/273 (18%), Positives = 95/273 (34%), Gaps = 57/273 (20%)
Query: 77 IHMLTTLKELELYDNQLT------VIENLDTLINLEILDLSFNRIREIKGLDHLA----- 125
+ +L + + L D LT + L L L+L N + + G+ +
Sbjct: 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQGLQT 82
Query: 126 ---NLEKLYLCSNKISKI------ENVDHLKKLKVLELGDNKI-----RIIEN--LDGLT 169
++KL L + ++ + L L+ L L DN + +++ LD
Sbjct: 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142
Query: 170 NLEELYLGKNKISRIDN------LASLTKLNILSLQCNRL--RTIENL-EAL----TNLT 216
LE+L L +S L + L++ N + + L + L L
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202
Query: 217 QLYLSENGLTT------IENLLSNEKLETLDVAYNKIS------IIQNIAH-LTELQEFW 263
L L G+T+ + S L L + NK+ + + H + L+ W
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262
Query: 264 INDNQVSDWNTV---NVLENNKQLQTIYLDRNP 293
I + ++ VL + L+ + L N
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295
Score = 68.8 bits (169), Expect = 3e-13
Identities = 53/269 (19%), Positives = 93/269 (34%), Gaps = 58/269 (21%)
Query: 81 TTLKELELYDNQLTVIE-------NLDTLINLEILDLSFNRIREI------KGLDHLANL 127
TL+EL L DN L LD LE L L + + L +
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172
Query: 128 EKLYLCSNKISKIENVDHL--------KKLKVLELGDNKIR------IIENLDGLTNLEE 173
++L + +N I++ V L +L+ L+L + + + +L E
Sbjct: 173 KELTVSNNDINE-AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231
Query: 174 LYLGKNKISRID-------NLASLTKLNILSLQCNRLRTI------ENLEALTNLTQLYL 220
L LG NK+ + L ++L L + + L A +L +L L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291
Query: 221 SEN-----GLTTIENLL--SNEKLETLDVAYNKIS------IIQNIAHLTELQEFWINDN 267
+ N G + L +LE+L V + +A L E I++N
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351
Query: 268 QVSDWNTVNVLE----NNKQLQTIYLDRN 292
++ D + + L+ ++L
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADC 380
Score = 67.7 bits (166), Expect = 8e-13
Identities = 48/265 (18%), Positives = 94/265 (35%), Gaps = 54/265 (20%)
Query: 81 TTLKELELYDNQLT---VIENLDTLINLEILDLSFNRIREI------KGLDHLANLEKLY 131
++ L++ +L+ E L L +++ L + E L L +L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 132 LCSNKISKIENVDHL--------KKLKVLELGDNKIR------IIENLDGLTNLEELYLG 177
L SN++ V + K++ L L + + + L L L+EL+L
Sbjct: 63 LRSNELGD-VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 178 KNKISRID-------NLASLTKLNILSLQCNRLRTI------ENLEALTNLTQLYLSEN- 223
N + L +L L L+ L L A + +L +S N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 224 ----GLTTIENLL--SNEKLETLDVAYNKIS------IIQNIAHLTELQEFWINDNQVSD 271
G+ + L S +LE L + ++ + +A L+E + N++ D
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241
Query: 272 WNTVN----VLENNKQLQTIYLDRN 292
+L + +L+T+++
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWEC 266
Score = 66.5 bits (163), Expect = 2e-12
Identities = 48/269 (17%), Positives = 89/269 (33%), Gaps = 58/269 (21%)
Query: 81 TTLKELELYDNQL--TVIENL-----DTLINLEILDLSFNRIRE------IKGLDHLANL 127
KEL + +N + + L D+ LE L L + + A+L
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229
Query: 128 EKLYLCSNKISKIENVDHL--------KKLKVLELGDNKI------RIIENLDGLTNLEE 173
+L L SNK+ + L +L+ L + + I + L +L+E
Sbjct: 230 RELALGSNKLGD-VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288
Query: 174 LYLGKNKI--SRIDNLASL-----TKLNILSLQCNRLRTI------ENLEALTNLTQLYL 220
L L N++ L +L L ++ L L +L +
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348
Query: 221 SEN-----GLTTIENLL--SNEKLETLDVAYNKIS------IIQNIAHLTELQEFWINDN 267
S N G+ + L L L +A +S + + L+E +++N
Sbjct: 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408
Query: 268 QVSDWNTVNVLE----NNKQLQTIYLDRN 292
+ D + ++E L+ + L
Sbjct: 409 CLGDAGILQLVESVRQPGCLLEQLVLYDI 437
Score = 44.6 bits (106), Expect = 3e-05
Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 30/146 (20%)
Query: 78 HMLTTLKELELYDNQLT------VIENLDTLINLEILDLSFNRIREIKGLDHLA------ 125
L+ L + T L L L +S NR+ + G+ L
Sbjct: 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQP 368
Query: 126 --NLEKLYLCSNKISKI------ENVDHLKKLKVLELGDNKI------RIIENL-DGLTN 170
L L+L +S + L+ L+L +N + +++E++
Sbjct: 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 428
Query: 171 LEELYLGKNKISR--IDNLASLTKLN 194
LE+L L S D L +L K
Sbjct: 429 LEQLVLYDIYWSEEMEDRLQALEKDK 454
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 64.0 bits (155), Expect = 9e-12
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 150 KVLELGDNKIRIIENLDGLTNLEELYL-GKNKISRIDN--LASLTKLNILSLQCNRLRTI 206
+ D + + +L G NL ELY+ + + ++ L L +L L++ + LR +
Sbjct: 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71
Query: 207 EN--LEALTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYN 245
L++L LS N L ++ + L+ L ++ N
Sbjct: 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
Score = 60.9 bits (147), Expect = 9e-11
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 133 CSNK--ISKIENVDHLKKLKVLEL-GDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNL 187
C+ + + ++ + L L + ++ +E L GL L L + K+ + +
Sbjct: 15 CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74
Query: 188 A--SLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSENGLT 226
A +L+ L+L N L ++ +L +L LS N L
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 57.8 bits (139), Expect = 1e-09
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 66 LRWNLIKKIENIHMLTTLKELELYDNQ-LTVIEN--LDTLINLEILDLSFNRIREI--KG 120
R + + ++ L EL + + Q L +E L L L L + + +R +
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 121 LDHLANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKIR 160
L +L L N + + L+ L L N +
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 56.7 bits (136), Expect = 2e-09
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 88 LYDNQLTVIENLDTLINLEILDLSFNR-IREIKG--LDHLANLEKLYLCSNKISKIEN-- 142
D L + +L NL L + + ++ ++ L L L L + + + +
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 143 VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
+L L L N + + + GL +L+EL L N
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGN 113
Score = 49.7 bits (118), Expect = 5e-07
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 14/111 (12%)
Query: 197 SLQCNRLRTIENLEA---LTNLTQLYLSEN-GLTTIEN-LLSN-EKLETLDVAYNKISII 250
L+C R +++L NLT+LY+ L +E L +L L + + + +
Sbjct: 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71
Query: 251 QNIA--HLTELQEFWINDNQVS--DWNTVNVLENNKQLQTIYLDRNPVAQD 297
A L ++ N + W TV L LQ + L NP+
Sbjct: 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGL----SLQELVLSGNPLHCS 118
Score = 45.1 bits (106), Expect = 1e-05
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 65 LLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG 120
+ ++ +E + L L+ L + + L + L L+LSFN + +
Sbjct: 38 IENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97
Query: 121 --LDHLANLEKLYLCSN 135
+ L +L++L L N
Sbjct: 98 KTVQGL-SLQELVLSGN 113
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 59.6 bits (145), Expect = 5e-11
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 29/122 (23%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
++ LEL N+L + + D L L KL L N+I +
Sbjct: 28 SSATRLELESNKLQSLPH--------------------GVFDKLTQLTKLSLSQNQIQSL 67
Query: 141 EN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DNLASLT 191
+ D L KL +L L +NK++ + N D LT L+EL L N++ + D L SL
Sbjct: 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Query: 192 KL 193
K+
Sbjct: 128 KI 129
Score = 55.7 bits (135), Expect = 1e-09
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
RL L N ++ + + LT L +L L NQ+ + + D L L IL L N+++
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 118 I-KGL-DHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
+ G+ D L L++L L +N++ + + D L L+ + L N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 55.0 bits (133), Expect = 2e-09
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRT 205
LEL NK++ + + D LT L +L L +N+I + + LTKL IL L N+L++
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 206 IEN--LEALTNLTQLYLSENGLTTI 228
+ N + LT L +L L N L ++
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSV 115
Score = 52.3 bits (126), Expect = 2e-08
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 31/132 (23%)
Query: 169 TNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
++ L L NK+ + + LT+L LSL N+++++ + + LT LT LYL EN
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 225 LTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQ---VSDWNTVNVLENN 281
L ++ N ++K LT+L+E ++ NQ V D + +
Sbjct: 88 LQSLPN-----------GVFDK---------LTQLKELALDTNQLKSVPD----GIFDRL 123
Query: 282 KQLQTIYLDRNP 293
LQ I+L NP
Sbjct: 124 TSLQKIWLHTNP 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 58.2 bits (141), Expect = 8e-10
Identities = 52/276 (18%), Positives = 94/276 (34%), Gaps = 67/276 (24%)
Query: 81 TTLKELELYDNQLT------VIENL-DTLINLEILDLSFNRIREIKGLDHLA-------- 125
+ L+L N L +I+ +T ++ L+LS N + K D L
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPA 80
Query: 126 NLEKLYLCSNKISKIENVDHL--------KKLKVLELGDNKIR------IIENLDGL-TN 170
N+ L L N +S ++ D L + VL+LG N + L +
Sbjct: 81 NVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139
Query: 171 LEELYLGKNKISR--IDNLASL-----TKLNILSLQCNRLRTIENLEAL--------TNL 215
+ L L N + D L + +N L+L+ N L +N L ++
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASV 198
Query: 216 TQLYLSENGLTT------IENLLSN-EKLETLDVAYNKIS------IIQNIAHLTELQEF 262
T L LS N L S + +L++ N + + L LQ
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258
Query: 263 WINDNQVSD------WNTVNVLENNKQLQTIYLDRN 292
+++ + V + N +++ + +
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294
Score = 52.4 bits (126), Expect = 6e-08
Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 58/222 (26%)
Query: 81 TTLKELELYDNQLT---------VIENLDTLINLEILDLSFNRIREIKGLDHLA------ 125
+ L L N L+ + + + +LDL +N K
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPF--TITVLDLGWNDFSS-KSSSEFKQAFSNL 136
Query: 126 --NLEKLYLCSNKISKIENVDHL--------KKLKVLELGDNKIR------IIENLDGL- 168
++ L L N + ++ D L + L L N + + + L +
Sbjct: 137 PASITSLNLRGNDLGI-KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195
Query: 169 TNLEELYLGKNKISR--IDNLASL-----TKLNILSLQCNRLRT------IENLEALTNL 215
++ L L N + LA + + L+L N L ++L +L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255
Query: 216 TQLYLSENGLTTI---------ENLLSNEKLETLDVAYNKIS 248
+YL + + + + +K+ +D +I
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
Score = 45.5 bits (108), Expect = 1e-05
Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 37/199 (18%)
Query: 81 TTLKELELYDNQLT---------VIENLDTLINLEILDLSFNRIREIKGLDHLA------ 125
+ L L N L + ++ ++ LDLS N + K LA
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPA--SVTSLDLSANLLGL-KSYAELAYIFSSI 223
Query: 126 --NLEKLYLCSNKISK------IENVDHLKKLKVLELGDNKIR---------IIENLDGL 168
++ L LC N + D LK L+ + L + ++ + +
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283
Query: 169 TNLEELYLGKNKISR--IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT 226
+ + +I +++L + L + A + T +
Sbjct: 284 QKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDE 343
Query: 227 TIENLLSNEKLETLDVAYN 245
E++ + + L ++
Sbjct: 344 LRESIQTCKPLLEHHHHHH 362
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 56.3 bits (136), Expect = 4e-09
Identities = 42/255 (16%), Positives = 82/255 (32%), Gaps = 55/255 (21%)
Query: 79 MLTTLKELELYDNQLTVIEN-------LDTLINLEILDLSFNRIREIKG---LDHLANLE 128
+L++L++L L ++T ++ L+ ++L+ ++ L
Sbjct: 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129
Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI---- 184
KL L N + E L+ L L ++ + L L N ++
Sbjct: 130 KLGLQLNSLGP-EACKDLRDL----LLHDQ----------CQITTLRLSNNPLTAAGVAV 174
Query: 185 --DNLASLTKLNILSLQCNRLRTI------ENLEALTNLTQLYLSENGLTTI------EN 230
+ LA T + LSL L L+ L +L ++ NG
Sbjct: 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234
Query: 231 LLSNEKLETLDVAYNKIS---------IIQNIAHLTELQEFWINDNQVSDWNTV---NVL 278
+ LE L + +N++S + + VS++ +V V
Sbjct: 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQ 294
Query: 279 ENNKQLQTIYLDRNP 293
N + R+
Sbjct: 295 RNLNSWDRARVQRHL 309
Score = 49.3 bits (118), Expect = 7e-07
Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 34/182 (18%)
Query: 146 LKKLKVLELGDNKIR------IIENL-DGLTNLEELYLGKNKIS---RIDNLASLTKLNI 195
L L+ L L ++ + L G L+E+ L ++ L +
Sbjct: 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130
Query: 196 LSLQCNRLRTIENLEAL--------TNLTQLYLSENGLTTI------ENLLSNEKLETLD 241
L LQ N L E + L +T L LS N LT E L N + L
Sbjct: 131 LGLQLNSLGP-EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189
Query: 242 VAYNKIS------IIQNIAHLTELQEFWINDNQVSD---WNTVNVLENNKQLQTIYLDRN 292
+ + + + + +LQE + N D + L+ ++L N
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249
Query: 293 PV 294
+
Sbjct: 250 EL 251
Score = 47.4 bits (113), Expect = 3e-06
Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 38/201 (18%)
Query: 81 TTLKELELYDNQLTVI------ENLDTLINLEILDLSFNRIREIKGLDHLA-------NL 127
+ L L +N LT E L ++ L L + + +GL+ LA L
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD-EGLELLAAQLDRNRQL 213
Query: 128 EKLYLCSNKISKI------ENVDHLKKLKVLELGDNKIR------IIENLDGLTNLEELY 175
++L + N L++L L N++ + + +
Sbjct: 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVV 273
Query: 176 LGKNKISRIDNLASLTKLNILS--LQCNRLRTIENLEALTNLTQLYLSENGLTTI----- 228
+ + + + S+ ILS + ++ L L ++ T+
Sbjct: 274 VSLTEGTAVSEYWSV----ILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRK 329
Query: 229 -ENLLSNEKLETLDVAYNKIS 248
+ L ++ L
Sbjct: 330 AQLLRVEGEVRALLEQLGSSG 350
Score = 28.5 bits (64), Expect = 3.4
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 29/136 (21%)
Query: 165 LDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSE 222
+ L LE K K+ ++ L L+ L + E L++L QL L+
Sbjct: 22 IKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAG 81
Query: 223 NGLTTI------ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVN 276
+T + L S L E + Q+
Sbjct: 82 VRMTPVKCTVVAAVLGSGRH---------------------ALDEVNLASCQLDPAGLRT 120
Query: 277 VLENNKQLQTIYLDRN 292
+L + + + L N
Sbjct: 121 LLPVFLRARKLGLQLN 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 53.0 bits (128), Expect = 9e-09
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DNLASLTKLNILSLQCNR 202
+ L L +N+I +E D L NL++LY NK++ I D LT+L L L N
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD---KLTQLTQLDLNDNH 92
Query: 203 LRTIEN--LEALTNLTQLYLSEN 223
L++I + L +LT +YL N
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNN 115
Score = 50.7 bits (122), Expect = 6e-08
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 26/104 (25%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL-DHLANLEKLYLCSNKISK 139
T + L L +NQ+T +E G+ DHL NL++LY SNK++
Sbjct: 33 TDKQRLWLNNNQITKLEP---------------------GVFDHLVNLQQLYFNSNKLTA 71
Query: 140 IEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
I D L +L L+L DN ++ I D L +L +YL N
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 46.5 bits (111), Expect = 2e-06
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
+RL L N I K+E L L++L N+LT I D L L LDL+ N ++
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 118 I-KG-LDHLANLEKLYLCSN 135
I +G D+L +L +YL +N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 44.6 bits (106), Expect = 7e-06
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 169 TNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
T+ + L+L N+I++++ L L L N+L I + LT LTQL L++N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 225 LTTI 228
L +I
Sbjct: 93 LKSI 96
Score = 40.7 bits (96), Expect = 1e-04
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 29/108 (26%)
Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
T L L N++ +E + L NL QLY + N LT I ++K
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-----------GVFDK-- 79
Query: 249 IIQNIAHLTELQEFWINDNQ---VSDWNTVNVLENNKQLQTIYLDRNP 293
LT+L + +NDN + +N K L IYL NP
Sbjct: 80 -------LTQLTQLDLNDNHLKSIPR----GAFDNLKSLTHIYLYNNP 116
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 52.6 bits (127), Expect = 1e-08
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DNLASLTKLNILSLQCNR 202
+VL L DN+I +E D LT L L L N+++ + D LT+L LSL N+
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD---KLTQLTQLSLNDNQ 89
Query: 203 LRTIEN--LEALTNLTQLYLSEN 223
L++I + L +LT ++L N
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
Score = 49.2 bits (118), Expect = 2e-07
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 26/104 (25%)
Query: 81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL-DHLANLEKLYLCSNKISK 139
TT + L LYDNQ+T +E G+ D L L +L L +N+++
Sbjct: 30 TTTQVLYLYDNQITKLEP---------------------GVFDRLTQLTRLDLDNNQLTV 68
Query: 140 IEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
+ D L +L L L DN+++ I D L +L ++L N
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 47.2 bits (113), Expect = 1e-06
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
+ L L N I K+E LT L L+L +NQLTV+ D L L L L+ N+++
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 118 I-KG-LDHLANLEKLYLCSN 135
I +G D+L +L ++L +N
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 46.1 bits (110), Expect = 2e-06
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 169 TNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
T + LYL N+I++++ LT+L L L N+L + + LT LTQL L++N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 225 LTTI 228
L +I
Sbjct: 90 LKSI 93
Score = 41.8 bits (99), Expect = 7e-05
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 29/108 (26%)
Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
T +L L N++ +E + LT LT+L L N LT + ++K
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-----------AGVFDK-- 76
Query: 249 IIQNIAHLTELQEFWINDNQ---VSDWNTVNVLENNKQLQTIYLDRNP 293
LT+L + +NDNQ + +N K L I+L NP
Sbjct: 77 -------LTQLTQLSLNDNQLKSIPR----GAFDNLKSLTHIWLLNNP 113
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 52.3 bits (125), Expect = 5e-08
Identities = 29/177 (16%), Positives = 77/177 (43%), Gaps = 11/177 (6%)
Query: 149 LKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDN-LASLTKLNILSLQCNRLRTIE 207
K+L+ + +I II N + L ++ ++ ++ + +L LR+
Sbjct: 82 YKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP 141
Query: 208 NLEALTNLTQLYLSENGLTTIENLLSN-EKLETLDVAYNKISIIQNIAHLTE----LQEF 262
+L A L T+ + N +L +L+++ N++ + +++ + + L+
Sbjct: 142 DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 201
Query: 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVA----QDPNYRRKIKLVCPWIVQID 315
++ N++ ++ ++ K L+ ++LD N + Y I+ P ++++D
Sbjct: 202 NLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257
Score = 48.8 bits (116), Expect = 6e-07
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 78 HMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLA----NLEKLYLC 133
++ L L +IE + + L L+LS NR+ + + + NL+ L L
Sbjct: 147 NIDVVLNRRSCMAATLRIIE--ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS 204
Query: 134 SNKISKIENVDHLKKLKVLEL 154
N++ +D +K LK+ EL
Sbjct: 205 GNELKSERELDKIKGLKLEEL 225
Score = 46.1 bits (109), Expect = 6e-06
Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 107 ILDLS-FNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENL 165
LDL ++ + L + + + IE +++ +L L L +N++ ++++
Sbjct: 131 ALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE--ENIPELLSLNLSNNRLYRLDDM 188
Query: 166 DGL----TNLEELYLGKNKISRIDNLASLTKLNILSL 198
+ NL+ L L N++ L + L + L
Sbjct: 189 SSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 225
Score = 44.6 bits (105), Expect = 2e-05
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 127 LEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIENL-----DGLTNLEELYLGKN 179
+ K Y S + ++ + D + +++ N+ + + + L L L N
Sbjct: 121 MSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN 180
Query: 180 KISRIDNLASL----TKLNILSLQCNRLRTIENLEALT--NLTQLYLSENGLTTIENLLS 233
++ R+D+++S+ L IL+L N L++ L+ + L +L+L N L S
Sbjct: 181 RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQS 240
Query: 234 N 234
Sbjct: 241 T 241
Score = 30.4 bits (68), Expect = 0.66
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 61 IERLLLRWNLIKKIENI----HMLTTLKELELYDNQLTVIENLDTL--INLEILDLSFN 113
+ L L N + +++++ LK L L N+L LD + + LE L L N
Sbjct: 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 6e-08
Identities = 55/307 (17%), Positives = 100/307 (32%), Gaps = 73/307 (23%)
Query: 41 ESEAETTESKAEDEESKEVCIERLLLRWN---LIKK--IENIHMLTTLKE--LELYDNQL 93
+ +RL +N + K + + L++ LEL +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 94 TVIEN----------LDTLINLEILD--------LSFNRIREIKGLDHLANLEKLYLCSN 135
+I+ LD ++ ++ L+ + + L L+KL +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV--LEMLQKLLYQID 210
Query: 136 KISKIENVDHLK--KLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKL 193
+ DH KL++ + R++++ L L L N+ +
Sbjct: 211 P-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVL--------LNVQNAKAW 259
Query: 194 NILSLQCNRL---RTIENLEALTNLTQLYLSEN----GLTTIE--NLLSN------EKL- 237
N +L C L R + + L+ T ++S + LT E +LL + L
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 238 -ETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQ 296
E L ++SII + + W N W VN +K I N
Sbjct: 320 REVLTTNPRRLSIIA--ESIRDGLATWDN------WKHVN---CDKLTTIIESSLN--VL 366
Query: 297 DPNYRRK 303
+P RK
Sbjct: 367 EPAEYRK 373
Score = 50.6 bits (120), Expect = 4e-07
Identities = 51/309 (16%), Positives = 105/309 (33%), Gaps = 70/309 (22%)
Query: 17 LVT----LNVEAVENTHGNQMSLDNPD---EESEAETTESKA----EDEESKEVC-IERL 64
L+T + + +SLD+ E ++ K + +EV
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 65 LL------------RWNLIKKIENIHMLTTLK---------EL-ELYDNQLTVIENLDTL 102
L W+ K + + T ++ E +++D +L+V
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPP-SAH 386
Query: 103 IN---LEIL--DLSFNRIREIKGLDHLAN---LEKLYLCSNKISKIENVDHLKKLKVLEL 154
I L ++ D+ + + + ++ L +EK + IS I ++ K+K+
Sbjct: 387 IPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEK-QPKESTIS-IPSIYLELKVKLENE 442
Query: 155 GDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTN 214
I+++ + + L +D S + L+ IE+ E +T
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPP---YLDQY-------FYSHIGHHLKNIEHPERMTL 492
Query: 215 LTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF--WINDNQVSDW 272
++L +E K+ A+N I N L +L+ + +I DN
Sbjct: 493 FRMVFLD---FRFLEQ-----KIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYE 542
Query: 273 NTVNVLENN 281
VN + +
Sbjct: 543 RLVNAILDF 551
Score = 30.6 bits (68), Expect = 0.74
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Query: 49 SKAEDEESKEVCIERLLL--RWNLIKKIENI--------HMLTTLKELELYDNQLTVIEN 98
E E + + L R+ L +KI + +L TL++L+ Y + +
Sbjct: 482 KNIEHPERMTL-FRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 99 LDTLINLEILDLSFN 113
+ ILD
Sbjct: 540 KYERLVNAILDFLPK 554
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 49.1 bits (117), Expect = 9e-07
Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 29/204 (14%)
Query: 104 NLEILDLSFNRIREI--KGLDHLA----NLEKLYL--CSNKISK--IEN-VDHLKKLKVL 152
NL+ LDL + + ++ L H +L L + ++++S +E V LK L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216
Query: 153 ELGDNKI--RIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLE 210
+L ++ L LEEL G + + L++ C LR +
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTG--GYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274
Query: 211 ALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS---IIQNIAHLTELQEFWINDN 267
L + ++ S L TL+++Y + +++ + +LQ W+ D
Sbjct: 275 DAVP--------AYLPAVYSVCSR--LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324
Query: 268 QVSDWNTVNVLENNKQLQTIYLDR 291
+ D + K L+ + +
Sbjct: 325 -IEDAGLEVLASTCKDLRELRVFP 347
Score = 40.7 bits (95), Expect = 4e-04
Identities = 40/264 (15%), Positives = 91/264 (34%), Gaps = 49/264 (18%)
Query: 69 NLIKKIENIHMLTTLK-ELELYDNQLTVIENLDTLINLEILDLSFNRIRE---IKGLDHL 124
L + L L + L + L L+LS+ ++ +K L
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAV--YSVCSRLTTLNLSYATVQSYDLVKLLCQC 313
Query: 125 ANLEKLYLCSNKISKIENVD------HLKKLKVLELGDNKIRIIENLDGLT--------- 169
L++L++ IE+ K L+ L + ++ ++E LT
Sbjct: 314 PKLQRLWVLDY----IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369
Query: 170 ---NLEELYLGKNKISR------IDNLASLTKLNILSLQCNRLRTIEN----------LE 210
LE + +++ N ++T+ + ++ + +E
Sbjct: 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE 429
Query: 211 ALTNLTQLYLSEN-GLTTIENLLSN-EKLETLDVAYNKIS---IIQNIAHLTELQEFWIN 265
+L +L LS E + + +K+E L VA+ S + ++ L++ I
Sbjct: 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489
Query: 266 DNQVSDWNTVNVLENNKQLQTIYL 289
D D + + ++++++
Sbjct: 490 DCPFGDKALLANASKLETMRSLWM 513
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 45.3 bits (106), Expect = 1e-05
Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 26/129 (20%)
Query: 80 LTTLKELELYDNQLT--VIENLDT--LINLEILDLSFNR-----------IREIKGLDHL 124
LK LE+ L V+E++ L NLE L L R + D
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251
Query: 125 ANLEKLYLCSNKIS-----KIENVDHLKKLKVLELGDNKIR------IIENLDGLTNLEE 173
NL+ L + + D L +L+ +++ + +++++D + +L+
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311
Query: 174 LYLGKNKIS 182
+ + N +S
Sbjct: 312 INMKYNYLS 320
Score = 42.6 bits (99), Expect = 9e-05
Identities = 29/208 (13%), Positives = 69/208 (33%), Gaps = 36/208 (17%)
Query: 99 LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISK--IENV--DHLKKLKVLEL 154
LD + L L + I NL+ L + S + +E++ L L+ L L
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226
Query: 155 GDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRL-----RTIENL 209
+E+ ++ + + L L +
Sbjct: 227 YVG----VEDYGFDGDMNVF-------RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275
Query: 210 EALTNLTQLYLSENGLTT------IENLLSNEKLETLDVAYNKIS------IIQNIAHLT 257
+ L L + +S LT ++++ + L+ +++ YN +S + +++
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKI 335
Query: 258 ELQEFWINDNQVSDWNTVNVLENNKQLQ 285
++ + D+ D++ + E
Sbjct: 336 DVSDSQEYDD---DYSYPMITELEHHHH 360
Score = 33.8 bits (76), Expect = 0.075
Identities = 9/76 (11%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 62 ERLLLRWNLI-----KKIENIHMLTTLKELELYDNQLT------VIENLDTLINLEILDL 110
+ L + + +L L+ +++ LT +++++D + +L+ +++
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314
Query: 111 SFNRIREIKGLDHLAN 126
+N + + + L
Sbjct: 315 KYNYLSD-EMKKELQK 329
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 42.6 bits (100), Expect = 1e-04
Identities = 36/291 (12%), Positives = 80/291 (27%), Gaps = 51/291 (17%)
Query: 70 LIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLA---N 126
+ L L + N++ ++ + LDL + + + N
Sbjct: 262 KYMNLVFPRKLCRLGLSYMGPNEMPIL--FPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319
Query: 127 LEKLYLCS----NKISKIENVDHLKKLKVLELGDNKIRIIENLD--------------GL 168
LE L + + + + K+LK L + + G
Sbjct: 320 LEVLETRNVIGDRGLEVL--AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377
Query: 169 TNLEELYLGKNKISR------IDNLASLTKLNILSLQCNRLRTIENLEA--------LTN 214
LE + + + I+ L +L ++ L T L+
Sbjct: 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437
Query: 215 LTQLYLSEN-------GLTTIENLLSNEKLETLDVAYNKIS---IIQNIAHLTELQEFWI 264
L + GL+ I N + + + Y S +++ LQ+ +
Sbjct: 438 LRRFAFYLRQGGLTDLGLSYIGQYSPN--VRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495
Query: 265 NDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQID 315
S+ + L+ +++ + ++ I I
Sbjct: 496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 3e-04
Identities = 51/313 (16%), Positives = 100/313 (31%), Gaps = 104/313 (33%)
Query: 28 THGN-QMSLDNP-----------DE--ESEAETTESKAEDEESKEVCIERLLLRWNLIKK 73
+HG+ + L P ++ + E TE A D+E E L+ ++
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP-AE-LVGKF----- 64
Query: 74 IENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC 133
+ +++L E +++ + ++L+L E YL
Sbjct: 65 ---LGYVSSLVE----PSKVGQFD--------QVLNLCLTE------------FENCYLE 97
Query: 134 SNKI----SKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLAS 189
N I +K+ + +K EL I+ + K S +
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKEL----IKNYITARIMAKRP---FDKKSNSALFRAVG 150
Query: 190 LTKLNILSL---QCNRLRTIENLEALTNLTQLYLSENGLTTIENLL--SNEKLETLDVAY 244
++++ Q N + L LY + + L + +L+ S E L L
Sbjct: 151 EGNAQLVAIFGGQGN------TDDYFEELRDLYQTYHVL--VGDLIKFSAETLSEL---- 198
Query: 245 NKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN-NKQLQTIYLDRNPVAQDPNYRRK 303
I + ++ + + +W LEN + YL P++
Sbjct: 199 --------IRTTLDAEKVFTQGLNILEW-----LENPSNTPDKDYLLSIPIS-------- 237
Query: 304 IKLVCPWI--VQI 314
CP I +Q+
Sbjct: 238 ----CPLIGVIQL 246
Score = 31.6 bits (71), Expect = 0.45
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 28/118 (23%)
Query: 108 LDL--SFNRIREI--KGLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRI 161
+DL + +++ + +H + Y S I I N L + G+ RI
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHF---KDTYGFS--ILDIVINNP---VNLTIHFGGEKGKRI 1684
Query: 162 IENLDGLTNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIENLEALTNLTQ 217
EN + E + GK K +I T T + + L + TQ
Sbjct: 1685 RENYSAMI-FETIVDGKLKTEKIFKEINEHSTSY-----------TFRSEKGLLSATQ 1730
Score = 28.1 bits (62), Expect = 5.4
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 205 TIENLEALTNLTQLYLSENGLTTIENL-----LSNEKLE 238
+ L+ +TN+ L+ L I+ + LS E++E
Sbjct: 1858 DLRALDTVTNV----LNFIKLQKIDIIELQKSLSLEEVE 1892
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 36.3 bits (84), Expect = 0.003
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 104 NLEILDLSFNRIREIKG--LDHLANLEKLYLCSN 135
+ L L+ N + + LD L L +L +N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 35.9 bits (83), Expect = 0.004
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFN 113
EL L N LT + LD L L L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 35.6 bits (82), Expect = 0.005
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 125 ANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
+ +L L N ++ + +D L L+ LG N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 34.4 bits (79), Expect = 0.014
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
L L N L + L+AL L +L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 32.5 bits (74), Expect = 0.063
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 149 LKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
L L N + + LD L L +LG N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 29.4 bits (66), Expect = 0.79
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 169 TNLEELYLGKNKISRI-----DNLASLTKLNILS--LQCN 201
+ EL L N ++ + D L +L ++ + +C+
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70
Score = 29.0 bits (65), Expect = 1.0
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 23/61 (37%)
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDW 272
+ T+L L+ N LT + LD L L+ + N W
Sbjct: 31 VDTTELVLTGNNLTALPP-------GLLD-------------ALPALRTAHLGANP---W 67
Query: 273 N 273
Sbjct: 68 R 68
Score = 27.8 bits (62), Expect = 2.4
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 257 TELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
+ E + N ++ +L+ L+T +L NP
Sbjct: 31 VDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANP 66
Score = 26.7 bits (59), Expect = 6.3
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 62 ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTV 95
L+L N + + + L L+ L N
Sbjct: 34 TELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 35.6 bits (82), Expect = 0.015
Identities = 35/173 (20%), Positives = 57/173 (32%), Gaps = 22/173 (12%)
Query: 80 LTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRIREIKGLDHLA----NLEKLYLC 133
+ L+ L L +L+ ++ L NL L+LS L L L++L L
Sbjct: 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176
Query: 134 S-NKIS----KIENVDHLKKLKVLELGDNKIRI----IENL-DGLTNLEELYLGK-NKIS 182
+ ++ + + L L + + + L NL L L +
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236
Query: 183 R--IDNLASLTKLNILSL-QCNRLRTIENLEALTNLTQL-YLSENGLTTIENL 231
L L LSL +C + E L L + L L G+ L
Sbjct: 237 NDCFQEFFQLNYLQHLSLSRCYDI-IPETLLELGEIPTLKTLQVFGIVPDGTL 288
Score = 30.2 bits (68), Expect = 0.82
Identities = 31/218 (14%), Positives = 80/218 (36%), Gaps = 18/218 (8%)
Query: 91 NQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLK 150
+L E+L ++L +L + + +A +++ + ++ +
Sbjct: 40 YRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMD 99
Query: 151 VLELGDNKIRIIENLDGLTNLEELYLGKNKISR--IDNLASLTKLNILSLQCNRLRTIEN 208
+ + L + L+ L L ++S ++ LA + L L+L +
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159
Query: 209 LEAL----TNLTQLYLSENGLTT---IENLLSN--EKLETLDVAYNKISI----IQNIA- 254
L+ L + L +L LS T ++ +++ E + L+++ + ++ + +
Sbjct: 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219
Query: 255 HLTELQEFWIND-NQVSDWNTVNVLENNKQLQTIYLDR 291
L ++D + + + LQ + L R
Sbjct: 220 RCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSR 256
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.18
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 15/34 (44%)
Query: 71 IKKIENIHMLTTLKELELY--DN--QLTV---IE 97
+KK++ +LK LY D+ L + +E
Sbjct: 22 LKKLQA-----SLK---LYADDSAPALAIKATME 47
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 31.7 bits (72), Expect = 0.18
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
Query: 148 KLKVLELGDNKI--RIIENLDGLTNLEELYLGKNK---------ISRIDNLA-SLTKLNI 195
K++ ++ D+ I ++++GL +E++ L K +S+++NL S+ ++ I
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 196 LSLQCNRL--RTIENLEALTNLTQLYL------SENGLTTIENLLSNEKLE 238
+S C + + I L NL L+L E S LE
Sbjct: 122 IS--CGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 31.1 bits (71), Expect = 0.25
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 17/103 (16%)
Query: 207 ENLEALTNLTQLYLSENGLTTI------ENLLSNEKLETLDVAYNKIS------IIQNIA 254
E L+ T + + + E L N L++L+V N IS +++ +
Sbjct: 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ 118
Query: 255 HLTELQEFWINDNQVSDWNTV-----NVLENNKQLQTIYLDRN 292
T L E I++ N V N+LE N L
Sbjct: 119 SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161
Score = 29.6 bits (67), Expect = 0.81
Identities = 20/145 (13%), Positives = 46/145 (31%), Gaps = 29/145 (20%)
Query: 137 ISKIENVDHLKKLKVLELGDNK-------IRIIENLDGLTNLEELYLGKNKISRI----- 184
+ +I+N D L+ + L + E L T +++ + + +
Sbjct: 28 LKRIQNND--PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL 85
Query: 185 -DNLASLTKLNILSLQCNRLRT------IENLEALTNLTQLYLSENGLTT--------IE 229
+ L L L+++ N + +E L++ T+L +L +
Sbjct: 86 AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145
Query: 230 NLLSNEKLETLDVAYNKISIIQNIA 254
L N L + + +
Sbjct: 146 MLEKNTTLLKFGYHFTQQGPRLRAS 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 29.4 bits (66), Expect = 1.0
Identities = 20/130 (15%), Positives = 53/130 (40%), Gaps = 22/130 (16%)
Query: 185 DNLASLTKLNILSLQCNRLRTIENL-EAL---TNLTQLYLSENGLT------TIENLLSN 234
++ L ++NI +++ I +L EA ++ + L+ ++ IE + ++
Sbjct: 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS 97
Query: 235 EKLETLDVAYNKIS------IIQNIAHLTELQEFWINDNQVSDWNT------VNVLENNK 282
L L+V N ++ ++++ + EF ++ + S + +E N+
Sbjct: 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE 157
Query: 283 QLQTIYLDRN 292
L + +
Sbjct: 158 SLLRVGISFA 167
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 29.7 bits (66), Expect = 1.1
Identities = 15/131 (11%), Positives = 31/131 (23%), Gaps = 14/131 (10%)
Query: 147 KKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTI 206
KL + + +E L GLTN ++ + RI NR
Sbjct: 9 AKLAAIPMLAGYTGPLERLGGLTN--LVFRAGDLCLRIPG-------KGTEEYINRANEA 59
Query: 207 ENLEALTNL----TQLYLSENGLTTIENLLSNEK-LETLDVAYNKISIIQNIAHLTELQE 261
L++ + ++ + + S + +L
Sbjct: 60 VAAREAAKAGVSPEVLHVDPATGVMVTRYIAGAQTMSPEKFKTRPGSPARAGEAFRKLHG 119
Query: 262 FWINDNQVSDW 272
+
Sbjct: 120 SGAVFPFRFEL 130
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 28.3 bits (62), Expect = 4.6
Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 21/231 (9%)
Query: 45 ETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKEL--ELYDNQLTVIENLDTL 102
E + E + + + + + L D V+ L
Sbjct: 233 ENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGIL 292
Query: 103 INLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRII 162
+ + + + +++ + L + + + + VD LK+L ++ IR+
Sbjct: 293 QMILAMATTDDELQQRVACECLIAASSKKDKAKALCE-QGVDILKRL--YHSKNDGIRV- 348
Query: 163 ENLDGLTNLEELYLGKNKISR-----IDNLASLTKLNILSLQCNRLRTIENLEALTNLT- 216
L GL L I LA + ++ ++ + L LT
Sbjct: 349 RALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL 408
Query: 217 ------QLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
+L + + + +L Y ++ N+ + E QE
Sbjct: 409 DAECKEKLIEDKASIHALMDLARGGNQ---SCLYGVVTTFVNLCNAYEKQE 456
>2zwi_A Alpha-/beta-galactoside alpha-2,3-sialyltransfera;
alpha-2,3-sialyltransfease, JT-ISH-467, photobacterium
phosp glycosyltransferase; HET: C5P; 2.01A
{Photobacterium phosphoreum}
Length = 373
Score = 27.9 bits (61), Expect = 5.2
Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 12/219 (5%)
Query: 50 KAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILD 109
K + R + + + N EL + + + + +I
Sbjct: 25 NENSNNKKLISWSRYPINDETLLESINGSFFKNRPELIKSLDSMILTNEIKKVIINGNTL 84
Query: 110 LSFNRIREIKGLDHLANLE--KLYLCSNKISKIENVDHLKKLKVLE----LGDNKIRIIE 163
+ + + IK ++ L +L + ++ + +L E + +K I
Sbjct: 85 WAVDVVNIIKSIEALGKKTEIELNFYDDGSAEYVRLYDFSRLPESEQEYKISLSKDNIQS 144
Query: 164 NLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSEN 223
+++G + N I I + L L+ + T L +L + + +
Sbjct: 145 SINGTQPFD------NSIENIYGFSQLYPTTYHMLRADIFETNLPLTSLKRVISNNIKQM 198
Query: 224 GLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
S +K + + I+ + + F
Sbjct: 199 KWDYFTTFNSQQKNKFYNFTGFNPEKIKEQYKASPHENF 237
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 27.7 bits (62), Expect = 6.5
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 119 KGLDHLANLEKL----YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLT 169
L L EK L +N K K + + D KI +I GLT
Sbjct: 96 NPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVI----GLT 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.132 0.363
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,617,484
Number of extensions: 275028
Number of successful extensions: 5466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 458
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.6 bits)