RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14728
(319 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 104 bits (260), Expect = 4e-26
Identities = 65/200 (32%), Positives = 110/200 (55%)
Query: 68 WNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANL 127
N + I + LT L+ L +NQ++ I L L NL+ L L+ N++++I L L NL
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 243
Query: 128 EKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNL 187
L L +N+IS + + L KL L+LG N+I I L GLT L L L +N++ I +
Sbjct: 244 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303
Query: 188 ASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKI 247
++L L L+L N + I + +LT L +L+ + N ++ + +L + + L +N+I
Sbjct: 304 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQI 363
Query: 248 SIIQNIAHLTELQEFWINDN 267
S + +A+LT + + +ND
Sbjct: 364 SDLTPLANLTRITQLGLNDQ 383
Score = 100 bits (249), Expect = 1e-24
Identities = 57/164 (34%), Positives = 86/164 (52%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
++ L L N +K I + LT L +L+L +NQ++ + L L L L L N+I I
Sbjct: 220 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 279
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
L L L L L N++ I + +LK L L L N I I + LT L+ L+ N
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN 339
Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSEN 223
K+S + +LA+LT +N LS N++ + L LT +TQL L++
Sbjct: 340 KVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383
Score = 98.9 bits (245), Expect = 5e-24
Identities = 64/186 (34%), Positives = 94/186 (50%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
+E L+ N I I + +LT L EL L NQL I L +L NL LDL+ N+I +
Sbjct: 198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 257
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
L L L +L L +N+IS I + L L LEL +N++ I + L NL L L N
Sbjct: 258 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317
Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
IS I ++SLTKL L N++ + +L LTN+ L N ++ + L + ++
Sbjct: 318 NISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQ 377
Query: 240 LDVAYN 245
L +
Sbjct: 378 LGLNDQ 383
Score = 93.5 bits (231), Expect = 4e-22
Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%)
Query: 68 WNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANL 127
N + ++ + LTTL+ L++ N+++ I L L NLE L + N+I +I L L NL
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 221
Query: 128 EKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNL 187
++L L N++ I + L L L+L +N+I + L GLT L EL LG N+IS I L
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 281
Query: 188 ASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKI 247
A LT L L L N+L I + L NLT L L N ++ I + S KL+ L A NK+
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKV 341
Query: 248 SIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
S + ++A+LT + NQ+SD + L N ++ + L+
Sbjct: 342 SDVSSLANLTNINWLSAGHNQISD---LTPLANLTRITQLGLNDQ 383
Score = 61.2 bits (147), Expect = 4e-11
Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 24/259 (9%)
Query: 63 RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLD 122
+ +L + + L + L+ + I+ ++ L NL ++ S N++ +I L
Sbjct: 26 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK 85
Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182
+L L + + +N+I+ I + +L L L L +N+I I+ L LTNL L L N IS
Sbjct: 86 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 145
Query: 183 RID---------------------NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLS 221
I LA+LT L L + N++ I L LTNL L +
Sbjct: 146 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 205
Query: 222 ENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENN 281
N ++ I L L+ L + N++ I +A LT L + + +NQ+S+ L
Sbjct: 206 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGL 262
Query: 282 KQLQTIYLDRNPVAQDPNY 300
+L + L N ++
Sbjct: 263 TKLTELKLGANQISNISPL 281
Score = 55.4 bits (132), Expect = 3e-09
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 156 DNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNL 215
D I I L + LGK ++ + L ++ L +++I+ +E L NL
Sbjct: 9 DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNL 68
Query: 216 TQLYLSENGLTTIENLLSNEKLETL 240
TQ+ S N LT I L + KL +
Sbjct: 69 TQINFSNNQLTDITPLKNLTKLVDI 93
Score = 53.9 bits (128), Expect = 8e-09
Identities = 21/87 (24%), Positives = 40/87 (45%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
I +I LA K L ++ + L ++ L+ I+ I+ ++ L NL ++
Sbjct: 12 INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 71
Query: 175 YLGKNKISRIDNLASLTKLNILSLQCN 201
N+++ I L +LTKL + + N
Sbjct: 72 NFSNNQLTDITPLKNLTKLVDILMNNN 98
Score = 51.2 bits (121), Expect = 6e-08
Identities = 17/86 (19%), Positives = 30/86 (34%)
Query: 90 DNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKL 149
D + I L L + + L + L I I+ V++L L
Sbjct: 9 DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNL 68
Query: 150 KVLELGDNKIRIIENLDGLTNLEELY 175
+ +N++ I L LT L ++
Sbjct: 69 TQINFSNNQLTDITPLKNLTKLVDIL 94
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 67.0 bits (162), Expect = 1e-13
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 3/219 (1%)
Query: 71 IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
I I L ++ + +T L + L + I+G+ +L NL L
Sbjct: 9 INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGL 68
Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
L N+I+ + + +L K+ LEL N ++ + + GL +++ L L +I+ + LA L
Sbjct: 69 ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII 250
+ L +L L N++ I L LTNL L + ++ + L + KL TL NKIS I
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188
Query: 251 QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYL 289
+A L L E + +NQ+SD V+ L N L + L
Sbjct: 189 SPLASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTL 224
Score = 65.4 bits (158), Expect = 4e-13
Identities = 55/204 (26%), Positives = 99/204 (48%)
Query: 63 RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLD 122
++ + + L + L + +T IE + L NL L+L N+I ++ L
Sbjct: 23 KIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLK 82
Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182
+L + +L L N + + + L+ +K L+L +I + L GL+NL+ LYL N+I+
Sbjct: 83 NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT 142
Query: 183 RIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDV 242
I LA LT L LS+ ++ + L L+ LT L +N ++ I L S L + +
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHL 202
Query: 243 AYNKISIIQNIAHLTELQEFWIND 266
N+IS + +A+ + L + +
Sbjct: 203 KNNQISDVSPLANTSNLFIVTLTN 226
Score = 44.6 bits (104), Expect = 5e-06
Identities = 27/97 (27%), Positives = 49/97 (50%)
Query: 60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
++ L L N I I + LT L+ L + + Q++ + L L L L N+I +I
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGD 156
L L NL +++L +N+IS + + + L ++ L +
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226
Score = 41.2 bits (95), Expect = 7e-05
Identities = 24/130 (18%), Positives = 50/130 (38%)
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
I+ I +L ++ + + L +T L G+TTIE + L L
Sbjct: 9 INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGL 68
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
++ N+I+ + + +LT++ E ++ N + + + + L++ K L V
Sbjct: 69 ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128
Query: 301 RRKIKLVCPW 310
L
Sbjct: 129 SNLQVLYLDL 138
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 65.0 bits (157), Expect = 4e-13
Identities = 57/194 (29%), Positives = 100/194 (51%)
Query: 71 IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
IK+I + + L +T + L +++ + + + I+ ++G+ +L N+ KL
Sbjct: 14 IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 73
Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
+L NK++ I+ + +LK L L L +NK++ + +L L L+ L L N IS I+ L L
Sbjct: 74 FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII 250
+L L L N++ I L LT L L L +N ++ I L KL+ L ++ N IS +
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL 193
Query: 251 QNIAHLTELQEFWI 264
+ +A L L +
Sbjct: 194 RALAGLKNLDVLEL 207
Score = 62.7 bits (151), Expect = 3e-12
Identities = 61/180 (33%), Positives = 100/180 (55%)
Query: 63 RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLD 122
+ L+ + + L ++ ++ ++ + ++ + L N+ L L+ N++ +IK L
Sbjct: 28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLA 87
Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182
+L NL L+L NK+ + ++ LKKLK L L N I I L L LE LYLG NKI+
Sbjct: 88 NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT 147
Query: 183 RIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDV 242
I L+ LTKL+ LSL+ N++ I L LT L LYLS+N ++ + L + L+ L++
Sbjct: 148 DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 59.6 bits (143), Expect = 3e-11
Identities = 62/161 (38%), Positives = 87/161 (54%)
Query: 61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
I++++ + IK ++ I L + +L L N+LT I+ L L NL L L N+++++
Sbjct: 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS 107
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
L L L+ L L N IS I + HL +L+ L LG+NKI I L LT L+ L L N+
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 167
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLS 221
IS I LA LTKL L L N + + L L NL L L
Sbjct: 168 ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 208
Score = 57.3 bits (137), Expect = 2e-10
Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 3/194 (1%)
Query: 96 IENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELG 155
I + D +L + + + L +++++ ++ I ++ + +L + L L
Sbjct: 17 IFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN 76
Query: 156 DNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNL 215
NK+ I+ L L NL L+L +NK+ + +L L KL LSL+ N + I L L L
Sbjct: 77 GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136
Query: 216 TQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTV 275
LYL N +T I L KL+TL + N+IS I +A LT+LQ +++ N +SD +
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD---L 193
Query: 276 NVLENNKQLQTIYL 289
L K L + L
Sbjct: 194 RALAGLKNLDVLEL 207
Score = 53.9 bits (128), Expect = 3e-09
Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 3/180 (1%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
I++I D A K L ++ + L + + ++ I+ ++ + L N+ +L
Sbjct: 14 IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 73
Query: 175 YLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN 234
+L NK++ I LA+L L L L N+++ + +L+ L L L L NG++ I L+
Sbjct: 74 FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133
Query: 235 EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
+LE+L + NKI+ I ++ LT+L + DNQ+SD L +LQ +YL +N +
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHI 190
Score = 42.7 bits (99), Expect = 2e-05
Identities = 27/67 (40%), Positives = 35/67 (52%)
Query: 68 WNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANL 127
N I I + LT L L L DNQ++ I L L L+ L LS N I +++ L L NL
Sbjct: 143 NNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNL 202
Query: 128 EKLYLCS 134
+ L L S
Sbjct: 203 DVLELFS 209
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 59.7 bits (144), Expect = 6e-12
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 195 ILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN-EKLETLDVAYNKISIIQNI 253
+L L L + +LE L +T L LS N L + L+ LE L + N + + +
Sbjct: 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 254 AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQ 313
A+L LQE + +N++ + L + +L + L N + Q+ + ++ + P +
Sbjct: 62 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 121
Query: 314 I 314
I
Sbjct: 122 I 122
Score = 58.6 bits (141), Expect = 2e-11
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 84 KELELYDNQLTVIENLDTLINLEILDLSFNRIREIK-GLDHLANLEKLYLCSNKISKIEN 142
+ L L LTV+ +L+ L+ + LDLS NR+R + L L LE L N + ++
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 143 VDHLKKLKVLELGDNKIR---IIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQ 199
V +L +L+ L L +N+++ I+ L L L L N + + + + + S+
Sbjct: 61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120
Score = 54.0 bits (129), Expect = 8e-10
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 150 KVLELGDNKIRIIENLDGLTNLEELYLGKNKIS-RIDNLASLTKLNILSLQCNRLRTIEN 208
+VL L + ++ +L+ L + L L N++ LA+L L +L N L ++
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 209 LEALTNLTQLYLSENGLTTI---ENLLSNEKLETLDVAYNKISIIQNI 253
+ L L +L L N L + L+S +L L++ N + + I
Sbjct: 61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
Score = 50.5 bits (120), Expect = 1e-08
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 130 LYLCSNKISKIENVDHLKKLKVLELGDNKIR-IIENLDGLTNLEELYLGKNKISRIDNLA 188
L+L ++ + +++ L + L+L N++R + L L LE L N + +D +A
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62
Query: 189 SLTKLNILSLQCNRLRTI---ENLEALTNLTQLYLSENGLTTIENLLSN 234
+L +L L L NRL+ + L + L L L N L E +
Sbjct: 63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111
Score = 35.5 bits (81), Expect = 0.002
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 26/106 (24%)
Query: 64 LLLRWNLIKKIENIHMLTTLKELELYDNQLTV-IENLDTLINL----------------- 105
L L + + ++ L + L+L N+L L L L
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62
Query: 106 -----EILDLSFNRIREIKGLDHLA---NLEKLYLCSNKISKIENV 143
+ L L NR+++ + L L L L N + + E +
Sbjct: 63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 61.2 bits (147), Expect = 7e-12
Identities = 63/191 (32%), Positives = 98/191 (51%)
Query: 71 IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
I +I L + L +T + L + L I+ I G+++L NL ++
Sbjct: 8 INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 67
Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
+N+++ I + +L KL + + +N+I I L LTNL L L N+I+ ID L +L
Sbjct: 68 NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 127
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII 250
T LN L L N + I L LT+L QL S N +T ++ L + LE LD++ NK+S I
Sbjct: 128 TNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI 187
Query: 251 QNIAHLTELQE 261
+A LT L+
Sbjct: 188 SVLAKLTNLES 198
Score = 57.4 bits (137), Expect = 2e-10
Identities = 52/178 (29%), Positives = 89/178 (50%)
Query: 63 RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLD 122
+ +L + + L + L+ + I+ ++ L NL ++ S N++ +I L
Sbjct: 22 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK 81
Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182
+L L + + +N+I+ I + +L L L L +N+I I+ L LTNL L L N IS
Sbjct: 82 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 141
Query: 183 RIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
I L+ LT L L+ N++ ++ L LT L +L +S N ++ I L LE+L
Sbjct: 142 DISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
Score = 53.9 bits (128), Expect = 3e-09
Identities = 55/195 (28%), Positives = 96/195 (49%)
Query: 90 DNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKL 149
D + I L L + + L + L I I+ V++L L
Sbjct: 5 DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNL 64
Query: 150 KVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL 209
+ +N++ I L LT L ++ + N+I+ I LA+LT L L+L N++ I+ L
Sbjct: 65 TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 124
Query: 210 EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQV 269
+ LTNL +L LS N ++ I L L+ L+ + N+++ ++ +A+LT L+ I+ N+V
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKV 184
Query: 270 SDWNTVNVLENNKQL 284
SD + + L N + L
Sbjct: 185 SDISVLAKLTNLESL 199
Score = 48.9 bits (115), Expect = 1e-07
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 3/180 (1%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
I +I LA K L ++ + L ++ L+ I+ I+ ++ L NL ++
Sbjct: 8 INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 67
Query: 175 YLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN 234
N+++ I L +LTKL + + N++ I L LTNLT L L N +T I+ L +
Sbjct: 68 NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 127
Query: 235 EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
L L+++ N IS I ++ LT LQ+ + NQV+D + L N L+ + + N V
Sbjct: 128 TNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD---LKPLANLTTLERLDISSNKV 184
Score = 38.5 bits (88), Expect = 4e-04
Identities = 24/132 (18%), Positives = 52/132 (39%)
Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLE 238
I++I +L + L + + L +T L G+ +I+ + L
Sbjct: 6 TPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLT 65
Query: 239 TLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP 298
++ + N+++ I + +LT+L + +N+NQ++D + L N L +
Sbjct: 66 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 125
Query: 299 NYRRKIKLVCPW 310
N +L
Sbjct: 126 NLTNLNRLELSS 137
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 58.9 bits (141), Expect = 1e-10
Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 14/225 (6%)
Query: 81 TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
L+L +N++T I++ L NL L L N+I +I L LE+LYL N+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 137 ISKIENVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI----DNLASL 190
+ ++ K L+ L + +N+I + +GL + + LG N + +
Sbjct: 91 LKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI--ENLLSNEKLETLDVAYNKIS 248
KL+ + + + TI +LT+L+L N +T + +L L L +++N IS
Sbjct: 150 KKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208
Query: 249 IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
+ N + ++ N L ++K +Q +YL N
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253
Score = 43.9 bits (102), Expect = 1e-05
Identities = 45/257 (17%), Positives = 85/257 (33%), Gaps = 67/257 (26%)
Query: 61 IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
L L+ N I +I++ L L L L +N+++ I L+ LE L LS N+++
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 117 EI-----------------------KGLDHLANLEKLYLCSNKISKIENVD----HLKKL 149
E+ + L + + L +N + + +KKL
Sbjct: 93 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152
Query: 150 KVLELGDNKIRIIENLDGLTNLEELYLGKNKISR-----IDNLASLTKLN---------- 194
+ + D I I +L EL+L NKI++ + L +L KL
Sbjct: 153 SYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211
Query: 195 ------------ILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN--------LLSN 234
+ ++ L + +YL N ++ I +
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271
Query: 235 EKLETLDVAYNKISIIQ 251
+ + N + +
Sbjct: 272 ASYSGVSLFSNPVQYWE 288
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 52.2 bits (124), Expect = 6e-09
Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 3/143 (2%)
Query: 176 LGKNKISRIDNLASLTKLNILSLQCNRLRTIENL-EALTNLTQLYLSENGLTTIENLLSN 234
L I + + + L L+ ++ IENL L + S+N + ++
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62
Query: 235 EKLET--LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
+L+T ++ L +L E + +N + + ++ L + K L + + RN
Sbjct: 63 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122
Query: 293 PVAQDPNYRRKIKLVCPWIVQID 315
PV +YR + P + +D
Sbjct: 123 PVTNKKHYRLYVIYKVPQVRVLD 145
Score = 48.8 bits (115), Expect = 9e-08
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 66 LRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD-TLINLEILDLSFNRIREIKGLDHL 124
L LI++ +EL+L ++ VIENL TL + +D S N IR++ G L
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62
Query: 125 ANLEKLYLC 133
L+ L +
Sbjct: 63 RRLKTLLVN 71
Score = 44.9 bits (105), Expect = 2e-06
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 132 LCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDG-LTNLEELYLGKNKISRIDNLASL 190
L + I + + + + L+L KI +IENL L + + N+I ++D L
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62
Query: 191 TKLNILSLQCN 201
+L L + N
Sbjct: 63 RRLKTLLVNNN 73
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 50.6 bits (119), Expect = 8e-08
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 68 WNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANL 127
+ + + +L+EL + +N+L + L LE L SFN + E+ L NL
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPEL--PQNL 326
Query: 128 EKLYLCSNKISKIENV-DHLKKLKV 151
++L++ N + + ++ + ++ L++
Sbjct: 327 KQLHVEYNPLREFPDIPESVEDLRM 351
Score = 49.4 bits (116), Expect = 2e-07
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182
+LE+L + +NK+ ++ +L+ L N + + L NL++L++ N +
Sbjct: 282 LPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLR 337
Query: 183 RIDNL-ASLTKLNI 195
++ S+ L +
Sbjct: 338 EFPDIPESVEDLRM 351
Score = 48.3 bits (113), Expect = 5e-07
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 190 LTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISI 249
L L++ N+L + L L +L S N L + L N L+ L V YN +
Sbjct: 283 PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPELPQN--LKQLHVEYNPLRE 338
Query: 250 IQNI-AHLTELQ 260
+I + +L+
Sbjct: 339 FPDIPESVEDLR 350
Score = 48.3 bits (113), Expect = 6e-07
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 145 HLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLR 204
L+ L + +NK+ + LE L N ++ + L L L ++ N LR
Sbjct: 282 LPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLR 337
Query: 205 TIENLEALTNLTQLYLS 221
++ ++ L ++
Sbjct: 338 EFPDI--PESVEDLRMN 352
Score = 37.1 bits (84), Expect = 0.002
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 83 LKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIEN 142
ELEL + L+ + + +LE L S N + E+ + +L+ L + +N + + +
Sbjct: 40 AHELELNNLGLSSLP--ELPPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKALSD 95
Query: 143 VDHL 146
+ L
Sbjct: 96 LPPL 99
Score = 35.6 bits (80), Expect = 0.006
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 147 KKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTI 206
++ LEL + + + L +LE L N ++ + L L L + N L+ +
Sbjct: 38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKAL 93
Query: 207 ENLEALTNLTQ 217
+L L
Sbjct: 94 SDLPPLLEYLG 104
Score = 35.6 bits (80), Expect = 0.007
Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 8/113 (7%)
Query: 89 YDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKK 148
Y N + E N E +++ +R+R+ +L L + +S + +
Sbjct: 6 YYNAWSEWERNAPPGNGEQREMAVSRLRDCL----DRQAHELELNNLGLSSLP--ELPPH 59
Query: 149 LKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCN 201
L+ L N + + L +L+ L + N + + +L L + +S
Sbjct: 60 LESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL 110
Score = 35.6 bits (80), Expect = 0.007
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII 250
+ + L L L ++ L +L L S N LT + L + K +D N + +
Sbjct: 38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPELPQSLKSLLVD--NNNLKAL 93
Query: 251 QNIAHLTELQEFWINDNQVSDWN 273
++ L E N +
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPEL 116
Score = 33.3 bits (74), Expect = 0.030
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 29/94 (30%)
Query: 212 LTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271
+L +L +S N L + L LE L ++N ++ +
Sbjct: 283 PPSLEELNVSNNKLIELPALPPR--LERLIASFNHLAEVP-------------------- 320
Query: 272 WNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIK 305
E + L+ ++++ NP+ + P+ ++
Sbjct: 321 -------ELPQNLKQLHVEYNPLREFPDIPESVE 347
Score = 30.2 bits (66), Expect = 0.31
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 10/99 (10%)
Query: 41 ESEAETTESKAEDEESKEVC------IERLLLRWNLIKKIENIHMLTTLKELELYDNQLT 94
E A + + + L L + + + L+ L N LT
Sbjct: 14 ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLT 71
Query: 95 VIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC 133
+ L +L+ L + N ++ + L L +
Sbjct: 72 ELPEL--PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN 108
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 41.2 bits (95), Expect = 6e-05
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 56 SKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD----TLINLEILDLS 111
+K I+ + + K + T +++EL+ + IE +D TL + L LS
Sbjct: 2 AKATTIKDAIRIFEERKSVV----ATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALS 56
Query: 112 FNRIREIKGLDHLANLEKLYLC 133
N I +I L + NL L L
Sbjct: 57 TNNIEKISSLSGMENLRILSLG 78
Score = 40.8 bits (94), Expect = 7e-05
Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 33/195 (16%)
Query: 133 CSNKISKIENVDHLKKLKVLELG-DNKIRIIENLD----GLTNLEELYLGKNKISRIDNL 187
+ I E + + ++ I IE +D L + L L N I +I +L
Sbjct: 7 IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL 66
Query: 188 ASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKI 247
+ + L ILSL N ++ IENL+A+ + + ++YN+I
Sbjct: 67 SGMENLRILSLGRNLIKKIENLDAVADTLEEL---------------------WISYNQI 105
Query: 248 SIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP-------NY 300
+ + I L L+ ++++N++++W ++ L +L+ + L NP+ D Y
Sbjct: 106 ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165
Query: 301 RRKIKLVCPWIVQID 315
R ++ P + ++D
Sbjct: 166 RIEVVKRLPNLKKLD 180
Score = 37.4 bits (85), Expect = 0.001
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 80 LTTLKELELYDNQLTVIENLDTLINLEILDLSFN--RIREI-KGLDHLANLEKLYLCSNK 136
TT+K+ + E ++L I ++ L L + L L +N
Sbjct: 4 ATTIKDAIRIFEER----KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN 59
Query: 137 ISKIENVDHLKKLKVL 152
I KI ++ ++ L++L
Sbjct: 60 IEKISSLSGMENLRIL 75
Score = 32.7 bits (73), Expect = 0.031
Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 12/157 (7%)
Query: 64 LLLRWNLIKKI-ENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLD 122
L I+K+ + L K L L N + I +L + NL IL L N I++I+ LD
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLD 89
Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNK----IRIIENLDGLTNLEELYLGK 178
+A+ + S + + N I+ L L LE+L L
Sbjct: 90 AVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149
Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNL 215
N + + R+ ++ L L L
Sbjct: 150 NPLYNDYK-------ENNATSEYRIEVVKRLPNLKKL 179
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 41.2 bits (95), Expect = 8e-05
Identities = 53/222 (23%), Positives = 81/222 (36%), Gaps = 39/222 (17%)
Query: 80 LTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
+ + E+ LT + +L + IL LS N + L L +L L +
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 137 ISKIENVDHLKKLKVLELGDNKIR-------------------------IIENLDGLTNL 171
++K++ L L L+L N+++ + L GL L
Sbjct: 67 LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 172 EELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTT 227
+ELYL N++ + L KL LSL N L + L L NL L L EN L T
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 228 I-ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQ 268
I + + L + N I + W+ DN
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRR----WLQDNA 224
Score = 34.7 bits (78), Expect = 0.009
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTTI--ENLLSNE 235
+ I + +AS ++N L + +L + T L+LSEN L T L+
Sbjct: 1 HPICEVSKVASHLEVN---CDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYT 55
Query: 236 KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWN 273
+L L++ +++ +Q L L ++ NQ+
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Score = 28.1 bits (61), Expect = 1.4
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 68 WNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI-KGLDHLAN 126
L + L + L+ L NL+ L L N + I KG
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 127 LEKLYLCSN 135
L +L N
Sbjct: 197 LPFAFLHGN 205
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 40.2 bits (93), Expect = 9e-05
Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 6/122 (4%)
Query: 87 ELYDNQLTVIEN-LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENV-D 144
EL Q+ ++ + + L +R L L S+ + + + +
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62
Query: 145 HLKKLKVLELGDNKIRIIENLD----GLTNLEELYLGKNKISRIDNLASLTKLNILSLQC 200
++ +L L L +N++ ++++ NL+ L L N++ L + L + L
Sbjct: 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122
Query: 201 NR 202
+
Sbjct: 123 DG 124
Score = 36.7 bits (84), Expect = 0.001
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 8/125 (6%)
Query: 132 LCSNKISKIENV-DHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLAS- 189
L ++ +++ + L +R +L L + + + +
Sbjct: 4 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEEN 63
Query: 190 LTKLNILSLQCNRLRTIENL----EALTNLTQLYLSENGLTTIENLLSNEKL--ETLDVA 243
+ +L L+L NRL ++++ + NL L LS N L + L + L E L +
Sbjct: 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 123
Query: 244 YNKIS 248
N +S
Sbjct: 124 GNSLS 128
Score = 28.2 bits (62), Expect = 0.97
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 64 LLLRWNLIKKIENI-HMLTTLKELELYDNQLTVIENLDTLI----NLEILDLSFNRIREI 118
L R ++ + I + L L L +N+L ++++ +++ NL+IL+LS N ++
Sbjct: 47 LNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 106
Query: 119 KGLDHLANL--EKLYLCSNKISKIENVDHLKKLKVLEL 154
+ LD + L E+L+L N +S + E
Sbjct: 107 RELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER 144
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 40.3 bits (92), Expect = 1e-04
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 161 IIENLDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIENLE 210
+ G + L + + +I + + L +L KL S L+ + LE
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLE 242
Score = 34.9 bits (78), Expect = 0.009
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 99 LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
ILD+S RI + GL++L L + K
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 32.2 bits (71), Expect = 0.060
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 121 LDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIENLD 166
+ L + +I + +++LKKL+ ++ + L+
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLE 242
Score = 29.9 bits (65), Expect = 0.32
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 209 LEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDVAYNK 246
+ L +S + ++ L N +KL K
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 29.1 bits (63), Expect = 0.68
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 214 NLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVS 270
+ E+ +T I +L N L K+ +IQ + +L++ I+ N V
Sbjct: 9 SNRVFLCQESKVTEIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66
Query: 271 DW 272
+
Sbjct: 67 EV 68
Score = 26.8 bits (57), Expect = 3.6
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 82 TLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREI 118
+ + ++++T I +L N L ++R I
Sbjct: 9 SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVI 44
Score = 26.4 bits (56), Expect = 5.1
Identities = 5/35 (14%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 236 KLETLDVAYNKISIIQN--IAHLTELQEFWINDNQ 268
LD++ +I + + + +L +L+ + +
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 25.6 bits (54), Expect = 7.2
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 194 NILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTTIEN 230
+ Q +++ I +L N +L L I+
Sbjct: 11 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQK 46
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 40.3 bits (92), Expect = 2e-04
Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 21/107 (19%)
Query: 103 INLEILDLSFNRIRE---IKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKI 159
++++ LD+ + + + L L + + L ++
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT----------------EARCK 45
Query: 160 RIIENLDGLTNLEELYLGKNKIS--RIDNLASLTKLNILSLQCNRLR 204
I L L EL L N++ + + + +Q L+
Sbjct: 46 DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92
Score = 40.0 bits (91), Expect = 3e-04
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 193 LNILSLQCNRL---RTIENLEALTNLTQLYLSENGLTTI------ENLLSNEKLETLDVA 243
+ L +QC L R E L L + L + GLT L N L L++
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 244 YNKIS 248
N++
Sbjct: 64 SNELG 68
Score = 38.8 bits (88), Expect = 7e-04
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 19/101 (18%)
Query: 76 NIHMLTTLKELELYDNQLT------VIENLDTLINLEILDLSFNRIREIKGLDHLA---- 125
+ L+ L L D ++ + L +L LDLS N + + G+ L
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD-AGILQLVESVR 422
Query: 126 ----NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRII 162
LE+L L S+ + +L+ LE +R+I
Sbjct: 423 QPGCLLEQLVLYDIYWSE----EMEDRLQALEKDKPSLRVI 459
Score = 33.4 bits (74), Expect = 0.031
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 25/110 (22%)
Query: 147 KKLKVLELGDNKIR------IIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQC 200
L+VL L D + + L +L EL L N + + L + S++
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD-AGILQLVE----SVRQ 423
Query: 201 NRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII 250
L QL L + + ++L+ L+ + +I
Sbjct: 424 PG----------CLLEQLVLYDIYWSEE----MEDRLQALEKDKPSLRVI 459
Score = 33.0 bits (73), Expect = 0.042
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 61 IERLLLRWNLIKK---IENIHMLTTLKELELYDNQLT------VIENLDTLINLEILDLS 111
I+ L ++ + E + +L + + L D LT + L L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 112 FNRIREIKGLDHLANLEKLYLCSNK 136
N + + G+ + + C +
Sbjct: 64 SNELGD-VGVHCVLQGLQTPSCKIQ 87
Score = 30.7 bits (67), Expect = 0.27
Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 236 KLETLDVAYNKIS------IIQNIAHLTELQEFWINDNQVSDWNTVNVLE----NNKQLQ 285
L L +A +S + + L+E +++N + D + ++E L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 286 TIYLDRNPVAQD 297
+ L +++
Sbjct: 430 QLVLYDIYWSEE 441
Score = 27.2 bits (58), Expect = 2.9
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 60 CIERLLLRWNLIKKI------ENIHMLTTLKELELYDNQLT---VIENLDTLIN----LE 106
+ L L + + +L+EL+L +N L +++ ++++ LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 107 ILDLSFNRIREIKGLDHLANLEKLY 131
L L E D L LEK
Sbjct: 430 QLVLYDIYWSEE-MEDRLQALEKDK 453
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 37.9 bits (86), Expect = 0.001
Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 19/220 (8%)
Query: 90 DNQLTVI-ENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNKISKIENVDHL 146
L + + + + L NRI + NL L+L SN +++I+
Sbjct: 20 QQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77
Query: 147 KKLKVLELGDNKIRIIENL-----DGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQ 199
+ +L + + ++ GL L L+L + + + L L L LQ
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 200 CNRLRTIEN--LEALTNLTQLYLSENGLTTI--ENLLSNEKLETLDVAYNKISIIQ--NI 253
N L+ + + L NLT L+L N ++++ L+ L + N+++ +
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 254 AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
L L ++ N +S T + + LQ + L+ NP
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEAL-APLRALQYLRLNDNP 236
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 36.7 bits (83), Expect = 0.002
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 68 WNLIKKIENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIR-EIKGLDHL 124
+L + + + L L+L +N++ + L L L L++SFN + EI +L
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290
Query: 125 ANLEKLYLCSNK 136
+ +NK
Sbjct: 291 QRFDVSAYANNK 302
Score = 36.7 bits (83), Expect = 0.003
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 154 LGDNKI--RIIENLDGLTNLEELYLGKNKIS-RIDNLASLTKLNILSLQCNRL 203
L +N+I + + L L L L + N + I +L + ++ + N+
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Score = 32.8 bits (73), Expect = 0.042
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 198 LQCNRLRTI--ENLEALTNLTQLYLSENGLT-TIENLLSNEKLETLDVAYNK 246
L+ NR+ + L L L L +S N L I + ++ + A NK
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 32.8 bits (73), Expect = 0.043
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 109 DLSFNRIREI--KGLDHLANLEKLYLCSNKIS-KIENVDHLKKLKVLELGDNK 158
DL NRI +GL L L L + N + +I +L++ V +NK
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 30.9 bits (68), Expect = 0.20
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 213 TNLTQLYLSENGLT-TIENLLSN-EKLETLDVAYNKIS-IIQNIAHLTELQEFWINDNQ 268
NL L L N + T+ L+ + L +L+V++N + I +L +N+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 26.6 bits (57), Expect = 3.8
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 241 DVAYNKIS--IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
D+ N+I + Q + L L ++ N + + N ++ N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANNK 302
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 32.9 bits (73), Expect = 0.039
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 147 KKLKVLELGDNKIR-IIENLDGLTNLEELYLGKNKISRI------DNLASLTKLNILSLQ 199
K LK+ + + + L +++E+ L N I +N+AS L I
Sbjct: 8 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 200 CNRLRTIEN 208
+++
Sbjct: 68 DIFTGRVKD 76
Score = 30.6 bits (67), Expect = 0.21
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 15/81 (18%)
Query: 101 TLINLEILDLSFNRIREIKGL-------DHLANLEKLYLCSNKISKI-ENVDHLKKLKVL 152
I L+ L L +N I + + +L L L N+ S+ + VD ++++
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF-- 328
Query: 153 ELGDNKIRIIENLDGLTNLEE 173
R LD L ++EE
Sbjct: 329 -----STRGRGELDELDDMEE 344
Score = 30.2 bits (66), Expect = 0.36
Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 104 NLEILDLSFNRIREI-KGLDHLANLEKLYLCSNKISKI------ENVDHLKKLKVLELGD 156
+L++ ++ + + L +++++ L N I EN+ K L++ E D
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 157 NKIRIIEN 164
+++
Sbjct: 69 IFTGRVKD 76
Score = 28.3 bits (61), Expect = 1.2
Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 192 KLNILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTTI------ENLLSNEKLETLDVAY 244
L + ++ +++ L ++ ++ LS N + T EN+ S + LE + +
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 245 NKISIIQNIAH 255
+++
Sbjct: 69 IFTGRVKDEIP 79
Score = 26.4 bits (56), Expect = 4.9
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 83 LKELELYDNQLT-VIENLDTLINLEILDLSFNRIREI------KGLDHLANLEKLYLCSN 135
LK + V L +++ + LS N I + + +LE
Sbjct: 10 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69
Query: 136 KISKIEN 142
++++
Sbjct: 70 FTGRVKD 76
Score = 26.0 bits (55), Expect = 6.5
Identities = 6/72 (8%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 232 LSNEKLETLDVAYNKI-SIIQNIAHLTELQEFWINDNQVSDWNTV---NVLENNKQLQTI 287
+ + L+ + S+ + ++E ++ N + + + K L+
Sbjct: 5 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64
Query: 288 YLDRNPVAQDPN 299
+ +
Sbjct: 65 EFSDIFTGRVKD 76
Score = 26.0 bits (55), Expect = 7.4
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 74 IENIHMLTTLKELELYDNQLTVI------ENLDTLINLEILDLSFNRIREIKG 120
+ ++KE+ L N + EN+ + +LEI + S +K
Sbjct: 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKD 76
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 28.5 bits (62), Expect = 1.0
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 196 LSLQCNRLR--TIENLEALTNLTQLYLSENGLTT-IENLLSNEKLETLDVAYNKIS---I 249
L L L L + + + + + S +++ +D++ + I +
Sbjct: 5 LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63
Query: 250 IQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTI 287
++ ++LQ + ++SD VN L N L +
Sbjct: 64 HGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRL 100
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 25.9 bits (56), Expect = 8.0
Identities = 25/173 (14%), Positives = 48/173 (27%), Gaps = 22/173 (12%)
Query: 57 KEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE------------NLDTLIN 104
E+ E +R +K ++ E+E Y Q+ I+ + +I
Sbjct: 573 NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQ 632
Query: 105 L--------EILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGD 156
+ + N K + + + D + E
Sbjct: 633 ELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELY 692
Query: 157 NKIRIIEN--LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE 207
+ + LT L K K + L +L KL+ + L+ E
Sbjct: 693 GTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFE 745
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.132 0.363
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,124,725
Number of extensions: 52456
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 110
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)