Query psy14735
Match_columns 340
No_of_seqs 147 out of 1438
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 19:18:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11142 ribokinase; Provision 100.0 1.1E-50 2.5E-55 368.4 35.3 303 14-326 2-304 (306)
2 PTZ00292 ribokinase; Provision 100.0 5.3E-50 1.1E-54 367.1 35.2 309 10-326 11-325 (326)
3 cd01174 ribokinase Ribokinase 100.0 4.6E-48 1E-52 349.0 36.3 292 16-317 1-292 (292)
4 TIGR02152 D_ribokin_bact ribok 100.0 2.7E-46 5.9E-51 337.6 34.5 293 21-322 1-293 (293)
5 PRK09850 pseudouridine kinase; 100.0 5.3E-46 1.2E-50 338.6 32.0 304 13-327 3-308 (313)
6 PLN02341 pfkB-type carbohydrat 100.0 1.7E-46 3.7E-51 356.9 29.3 305 12-331 70-413 (470)
7 PLN02813 pfkB-type carbohydrat 100.0 4.8E-46 1E-50 349.1 27.7 308 12-334 67-414 (426)
8 cd01945 ribokinase_group_B Rib 100.0 4.5E-45 9.7E-50 328.3 31.0 284 16-317 1-284 (284)
9 PTZ00247 adenosine kinase; Pro 100.0 1.5E-45 3.2E-50 339.9 28.3 298 11-321 2-342 (345)
10 cd01168 adenosine_kinase Adeno 100.0 1.7E-45 3.8E-50 335.2 26.8 284 15-313 2-311 (312)
11 KOG2855|consensus 100.0 2.8E-45 6E-50 320.6 22.9 305 10-326 5-325 (330)
12 PLN02323 probable fructokinase 100.0 2.8E-44 6.1E-49 329.7 30.3 297 12-327 8-327 (330)
13 PRK09954 putative kinase; Prov 100.0 8E-44 1.7E-48 330.3 33.3 299 14-325 57-359 (362)
14 PF00294 PfkB: pfkB family car 100.0 4.1E-45 8.8E-50 331.1 23.0 292 14-317 1-300 (301)
15 cd01944 YegV_kinase_like YegV- 100.0 6E-43 1.3E-47 315.2 31.7 279 16-310 1-289 (289)
16 TIGR03828 pfkB 1-phosphofructo 100.0 4.5E-43 9.8E-48 318.3 30.1 289 20-327 5-301 (304)
17 TIGR02198 rfaE_dom_I rfaE bifu 100.0 2.1E-42 4.5E-47 315.4 32.7 298 11-325 4-314 (315)
18 COG0524 RbsK Sugar kinases, ri 100.0 7.6E-43 1.6E-47 317.8 29.2 299 16-327 1-309 (311)
19 PRK15074 inosine/guanosine kin 100.0 7.9E-43 1.7E-47 325.2 29.6 293 10-318 29-423 (434)
20 cd01942 ribokinase_group_A Rib 100.0 1E-42 2.2E-47 312.2 29.2 270 16-311 1-278 (279)
21 PRK09434 aminoimidazole ribosi 100.0 1.1E-42 2.3E-47 315.8 29.0 280 14-322 2-304 (304)
22 PLN02967 kinase 100.0 1E-42 2.2E-47 331.1 29.9 303 14-325 196-545 (581)
23 cd01166 KdgK 2-keto-3-deoxyglu 100.0 2.1E-42 4.5E-47 312.4 28.0 277 16-311 1-293 (294)
24 PRK10294 6-phosphofructokinase 100.0 6.3E-42 1.4E-46 311.3 30.9 294 16-328 3-307 (309)
25 cd01172 RfaE_like RfaE encodes 100.0 1E-41 2.2E-46 309.4 31.9 285 16-315 1-298 (304)
26 cd01939 Ketohexokinase Ketohex 100.0 9.4E-42 2E-46 307.5 30.6 278 16-311 1-289 (290)
27 PRK09513 fruK 1-phosphofructok 100.0 1.3E-41 2.7E-46 309.8 31.3 292 17-327 5-305 (312)
28 PLN02543 pfkB-type carbohydrat 100.0 6.1E-42 1.3E-46 323.0 28.7 302 14-327 125-489 (496)
29 cd01941 YeiC_kinase_like YeiC- 100.0 2.1E-41 4.6E-46 305.0 30.7 282 16-307 1-287 (288)
30 PLN02379 pfkB-type carbohydrat 100.0 8.3E-42 1.8E-46 315.6 28.3 300 11-325 16-355 (367)
31 cd01167 bac_FRK Fructokinases 100.0 6.2E-42 1.3E-46 309.5 26.0 272 16-311 1-294 (295)
32 COG1105 FruK Fructose-1-phosph 100.0 5.9E-41 1.3E-45 293.6 28.3 293 17-328 2-304 (310)
33 TIGR03168 1-PFK hexose kinase, 100.0 1.2E-40 2.6E-45 302.2 30.1 286 22-326 7-300 (303)
34 cd01164 FruK_PfkB_like 1-phosp 100.0 2.2E-40 4.7E-45 298.6 30.3 276 18-311 4-288 (289)
35 PRK13508 tagatose-6-phosphate 100.0 1.8E-40 3.8E-45 301.8 29.3 293 18-329 4-305 (309)
36 cd01947 Guanosine_kinase_like 100.0 2E-40 4.4E-45 295.0 29.0 264 16-312 1-265 (265)
37 TIGR01231 lacC tagatose-6-phos 100.0 1.4E-40 3E-45 302.5 27.3 293 19-329 4-305 (309)
38 cd01940 Fructoselysine_kinase_ 100.0 1.8E-40 4E-45 295.2 26.0 261 16-312 1-264 (264)
39 cd01943 MAK32 MAK32 kinase. M 100.0 2.1E-40 4.5E-45 302.8 21.1 274 16-311 1-304 (328)
40 PLN02548 adenosine kinase 100.0 1.3E-39 2.7E-44 299.1 25.8 284 20-313 1-325 (332)
41 PRK11316 bifunctional heptose 100.0 1E-38 2.2E-43 306.2 31.6 300 11-327 7-314 (473)
42 PRK09813 fructoselysine 6-kina 100.0 3.9E-38 8.5E-43 279.5 26.1 255 15-311 1-259 (260)
43 PLN02630 pfkB-type carbohydrat 100.0 7.5E-35 1.6E-39 265.0 28.3 266 12-327 9-291 (335)
44 cd01937 ribokinase_group_D Rib 100.0 5.6E-35 1.2E-39 258.5 26.6 248 16-307 1-254 (254)
45 cd01946 ribokinase_group_C Rib 100.0 2.4E-35 5.1E-40 264.1 23.5 264 16-312 1-276 (277)
46 KOG2854|consensus 100.0 7E-35 1.5E-39 252.0 20.1 290 16-317 8-338 (343)
47 COG2870 RfaE ADP-heptose synth 100.0 2.5E-32 5.4E-37 241.0 25.6 293 11-323 7-309 (467)
48 KOG2947|consensus 100.0 8.8E-30 1.9E-34 210.1 22.2 284 14-310 4-297 (308)
49 cd00287 ribokinase_pfkB_like r 100.0 8.5E-30 1.8E-34 216.3 22.1 190 16-284 1-196 (196)
50 PRK12412 pyridoxal kinase; Rev 99.8 5.9E-19 1.3E-23 156.9 20.2 170 132-309 56-247 (268)
51 TIGR00097 HMP-P_kinase phospho 99.8 8.7E-19 1.9E-23 154.7 17.7 171 131-309 50-241 (254)
52 cd01173 pyridoxal_pyridoxamine 99.8 1.1E-18 2.5E-23 154.2 17.2 172 129-308 50-251 (254)
53 PRK12413 phosphomethylpyrimidi 99.8 1.2E-17 2.7E-22 147.4 22.2 217 68-309 4-243 (253)
54 cd01169 HMPP_kinase 4-amino-5- 99.8 4E-18 8.8E-23 149.5 18.4 156 145-308 68-241 (242)
55 PRK06427 bifunctional hydroxy- 99.8 7.3E-18 1.6E-22 150.0 17.7 157 145-309 73-249 (266)
56 TIGR00687 pyridox_kin pyridoxa 99.8 3.8E-18 8.2E-23 153.3 16.0 171 129-308 52-256 (286)
57 PRK05756 pyridoxamine kinase; 99.8 9.9E-18 2.1E-22 150.6 17.4 172 129-309 52-256 (286)
58 PRK07105 pyridoxamine kinase; 99.8 1.3E-17 2.9E-22 149.6 18.2 163 145-311 75-258 (284)
59 PRK08573 phosphomethylpyrimidi 99.8 4.1E-17 8.9E-22 154.8 21.8 171 129-308 56-244 (448)
60 PRK08176 pdxK pyridoxal-pyrido 99.8 3.7E-17 8.1E-22 146.2 19.9 159 144-308 87-266 (281)
61 PRK12616 pyridoxal kinase; Rev 99.8 3.6E-17 7.8E-22 145.5 17.1 156 145-308 74-249 (270)
62 PTZ00347 phosphomethylpyrimidi 99.6 1.3E-14 2.9E-19 140.0 19.3 171 130-308 281-478 (504)
63 PTZ00344 pyridoxal kinase; Pro 99.6 1E-14 2.2E-19 131.5 17.1 177 128-309 54-259 (296)
64 KOG3009|consensus 99.6 2.7E-14 5.9E-19 128.6 16.1 239 16-308 342-600 (614)
65 PLN02898 HMP-P kinase/thiamin- 99.6 2.1E-14 4.6E-19 138.6 16.7 157 145-309 78-254 (502)
66 cd01171 YXKO-related B.subtili 99.6 1.5E-14 3.3E-19 127.8 14.5 158 142-309 74-236 (254)
67 PF08543 Phos_pyr_kin: Phospho 99.6 1.6E-14 3.6E-19 126.6 14.1 156 145-308 60-234 (246)
68 COG0351 ThiD Hydroxymethylpyri 99.6 1.7E-13 3.6E-18 118.0 17.0 170 130-307 54-244 (263)
69 PLN02978 pyridoxal kinase 99.5 2.1E-12 4.6E-17 116.9 21.4 172 130-308 66-267 (308)
70 PRK09517 multifunctional thiam 99.5 3.5E-13 7.7E-18 135.5 16.8 172 130-309 292-485 (755)
71 PRK14713 multifunctional hydro 99.5 5.7E-13 1.2E-17 129.3 17.4 220 65-307 27-271 (530)
72 cd01170 THZ_kinase 4-methyl-5- 99.5 1.3E-12 2.8E-17 114.1 16.6 162 136-307 40-221 (242)
73 TIGR00196 yjeF_cterm yjeF C-te 99.5 5.9E-13 1.3E-17 118.7 14.2 174 141-326 88-267 (272)
74 COG2240 PdxK Pyridoxal/pyridox 99.4 1.7E-11 3.6E-16 106.3 15.8 171 130-308 52-250 (281)
75 PTZ00493 phosphomethylpyrimidi 99.2 5E-10 1.1E-14 100.6 16.6 171 131-308 56-285 (321)
76 PRK09355 hydroxyethylthiazole 99.1 8.1E-09 1.8E-13 91.4 16.6 156 141-306 50-224 (263)
77 KOG2599|consensus 98.9 6.6E-08 1.4E-12 82.4 15.2 165 129-299 60-254 (308)
78 TIGR00694 thiM hydroxyethylthi 98.9 5E-08 1.1E-12 85.7 15.1 155 142-306 46-219 (249)
79 KOG2598|consensus 98.9 2.7E-08 5.8E-13 90.0 13.1 157 145-309 92-284 (523)
80 PRK14039 ADP-dependent glucoki 98.2 0.00024 5.1E-09 66.7 19.1 189 45-239 85-331 (453)
81 PF02110 HK: Hydroxyethylthiaz 98.2 0.00015 3.2E-09 62.9 16.6 152 143-304 47-217 (246)
82 PRK10565 putative carbohydrate 98.2 7.6E-05 1.7E-09 72.2 16.0 152 143-305 318-472 (508)
83 PRK03979 ADP-specific phosphof 98.1 0.00028 6.1E-09 66.3 17.6 187 47-239 98-346 (463)
84 TIGR02045 P_fruct_ADP ADP-spec 98.1 0.0005 1.1E-08 64.4 18.1 184 48-239 86-332 (446)
85 PRK14038 ADP-dependent glucoki 97.9 0.0021 4.6E-08 60.3 19.4 185 47-239 106-342 (453)
86 PF01256 Carb_kinase: Carbohyd 97.9 6.1E-05 1.3E-09 65.7 8.7 153 141-306 63-220 (242)
87 COG2145 ThiM Hydroxyethylthiaz 97.8 0.0013 2.8E-08 56.6 15.1 154 132-298 45-218 (265)
88 PF04587 ADP_PFK_GK: ADP-speci 97.2 0.0047 1E-07 58.8 11.5 185 48-241 92-336 (444)
89 KOG3974|consensus 97.1 0.026 5.7E-07 48.6 13.8 161 142-310 98-269 (306)
90 COG0063 Predicted sugar kinase 96.4 0.13 2.8E-06 45.9 13.8 149 143-301 99-253 (284)
91 cd01938 ADPGK_ADPPFK ADP-depen 95.2 0.7 1.5E-05 44.0 14.3 176 45-229 100-317 (445)
92 COG4809 Archaeal ADP-dependent 94.0 3.9 8.5E-05 37.7 15.2 105 131-238 211-347 (466)
93 PRK10076 pyruvate formate lyas 83.5 13 0.00029 31.7 9.7 85 145-235 38-131 (213)
94 COG1180 PflA Pyruvate-formate 81.3 32 0.0007 30.3 11.6 85 144-234 82-175 (260)
95 PRK04169 geranylgeranylglycery 67.8 42 0.00091 29.1 8.5 76 126-211 15-96 (232)
96 cd00757 ThiF_MoeB_HesA_family 66.7 69 0.0015 27.5 9.8 34 142-179 108-141 (228)
97 COG0269 SgbH 3-hexulose-6-phos 65.8 59 0.0013 27.7 8.7 91 143-241 78-173 (217)
98 COG1618 Predicted nucleotide k 64.5 78 0.0017 25.9 9.4 121 75-200 17-157 (179)
99 TIGR02826 RNR_activ_nrdG3 anae 63.7 34 0.00073 27.3 6.7 75 130-207 45-121 (147)
100 PRK06702 O-acetylhomoserine am 61.6 97 0.0021 29.6 10.5 68 131-203 135-206 (432)
101 COG1646 Predicted phosphate-bi 58.7 66 0.0014 27.8 7.8 61 143-211 39-106 (240)
102 TIGR00334 5S_RNA_mat_M5 ribonu 57.5 51 0.0011 27.1 6.7 80 145-227 22-108 (174)
103 cd05014 SIS_Kpsf KpsF-like pro 56.8 84 0.0018 23.8 10.2 40 218-259 61-100 (128)
104 PRK11557 putative DNA-binding 56.0 60 0.0013 28.7 7.8 104 130-245 112-216 (278)
105 PRK15482 transcriptional regul 54.5 50 0.0011 29.4 7.0 104 130-245 119-223 (285)
106 KOG4184|consensus 54.4 27 0.00057 32.0 5.0 160 45-211 137-317 (478)
107 PF13986 DUF4224: Domain of un 52.2 23 0.0005 22.1 3.1 32 200-236 2-33 (47)
108 COG1737 RpiR Transcriptional r 51.8 56 0.0012 29.2 6.8 98 129-240 113-213 (281)
109 COG1159 Era GTPase [General fu 51.7 1.3E+02 0.0028 27.1 8.8 106 65-178 3-118 (298)
110 PRK13397 3-deoxy-7-phosphohept 49.3 1.2E+02 0.0026 26.6 8.2 82 157-243 65-162 (250)
111 COG2894 MinD Septum formation 44.9 1.1E+02 0.0024 26.4 7.0 101 54-159 20-127 (272)
112 PRK08134 O-acetylhomoserine am 44.2 2.6E+02 0.0056 26.7 10.4 57 144-203 148-208 (433)
113 PF10087 DUF2325: Uncharacteri 44.0 54 0.0012 23.8 4.6 37 142-181 45-82 (97)
114 cd05005 SIS_PHI Hexulose-6-pho 43.2 1.8E+02 0.0039 23.6 10.5 97 130-243 17-114 (179)
115 PRK06598 aspartate-semialdehyd 42.1 3E+02 0.0064 25.8 11.0 98 67-186 3-102 (369)
116 TIGR03127 RuMP_HxlB 6-phospho 41.8 1.9E+02 0.0041 23.5 9.4 97 130-243 14-111 (179)
117 PRK11337 DNA-binding transcrip 41.7 91 0.002 27.8 6.7 105 130-246 124-229 (292)
118 TIGR01769 GGGP geranylgeranylg 41.3 79 0.0017 26.8 5.7 48 145-200 24-74 (205)
119 PF09314 DUF1972: Domain of un 41.1 36 0.00079 28.3 3.6 39 145-186 92-130 (185)
120 COG0075 Serine-pyruvate aminot 40.8 3.2E+02 0.0068 25.8 11.5 102 50-183 63-170 (383)
121 PLN03033 2-dehydro-3-deoxyphos 40.7 1.6E+02 0.0034 26.4 7.6 82 158-245 73-169 (290)
122 TIGR02495 NrdG2 anaerobic ribo 39.0 2.2E+02 0.0047 23.3 11.3 103 130-236 46-158 (191)
123 TIGR01768 GGGP-family geranylg 38.6 1.4E+02 0.0031 25.7 6.9 60 144-211 26-91 (223)
124 COG0547 TrpD Anthranilate phos 37.7 3.3E+02 0.0072 25.1 13.2 156 129-308 133-304 (338)
125 COG0219 CspR Predicted rRNA me 37.0 1E+02 0.0022 24.8 5.3 37 55-96 17-53 (155)
126 PRK05613 O-acetylhomoserine am 36.8 3.9E+02 0.0084 25.6 10.6 56 145-203 155-214 (437)
127 PHA00438 hypothetical protein 36.6 30 0.00065 24.0 2.0 19 267-285 45-63 (81)
128 PF13808 DDE_Tnp_1_assoc: DDE_ 36.4 93 0.002 22.3 4.7 56 272-329 22-77 (90)
129 COG2117 Predicted subunit of t 35.5 1.2E+02 0.0026 24.7 5.5 52 48-100 6-59 (198)
130 cd05013 SIS_RpiR RpiR-like pro 35.3 83 0.0018 23.8 4.8 27 218-244 74-100 (139)
131 PRK11145 pflA pyruvate formate 34.0 2.6E+02 0.0056 24.1 8.1 82 147-234 72-164 (246)
132 PF10911 DUF2717: Protein of u 33.9 35 0.00075 23.7 1.9 20 266-285 44-63 (77)
133 PRK13601 putative L7Ae-like ri 33.1 99 0.0022 21.9 4.3 34 144-180 23-56 (82)
134 TIGR02494 PFLE_PFLC glycyl-rad 32.9 3.5E+02 0.0076 24.0 9.2 82 147-234 127-217 (295)
135 PRK13018 cell division protein 32.8 2.7E+02 0.0059 26.1 8.3 127 47-200 33-179 (378)
136 KOG0257|consensus 32.8 1.6E+02 0.0035 27.7 6.7 50 127-181 156-212 (420)
137 PF01118 Semialdhyde_dh: Semia 32.6 1.7E+02 0.0038 22.0 6.0 38 143-186 64-101 (121)
138 PF11965 DUF3479: Domain of un 32.3 73 0.0016 26.0 3.9 46 132-180 44-91 (164)
139 PRK05198 2-dehydro-3-deoxyphos 32.2 1.6E+02 0.0034 26.1 6.2 81 158-244 67-162 (264)
140 PF02571 CbiJ: Precorrin-6x re 31.7 3.5E+02 0.0077 23.6 11.2 136 74-247 6-145 (249)
141 KOG0174|consensus 30.9 33 0.00072 28.5 1.8 45 269-314 147-191 (224)
142 TIGR00065 ftsZ cell division p 30.2 2.7E+02 0.0058 25.8 7.8 31 47-77 22-52 (349)
143 TIGR01361 DAHP_synth_Bsub phos 29.8 1.9E+02 0.0041 25.5 6.5 78 157-239 75-167 (260)
144 TIGR01362 KDO8P_synth 3-deoxy- 29.5 1.7E+02 0.0037 25.8 5.9 78 158-239 59-151 (258)
145 TIGR02355 moeB molybdopterin s 29.3 3.8E+02 0.0082 23.2 9.0 43 130-179 102-144 (240)
146 PRK13602 putative ribosomal pr 29.1 1E+02 0.0022 21.8 3.8 33 144-179 26-58 (82)
147 PF00265 TK: Thymidine kinase; 29.1 3.2E+02 0.0069 22.4 7.4 51 146-200 77-134 (176)
148 TIGR03128 RuMP_HxlA 3-hexulose 29.0 1.4E+02 0.003 24.9 5.4 56 144-202 75-133 (206)
149 COG0036 Rpe Pentose-5-phosphat 28.2 1.1E+02 0.0024 26.2 4.5 52 144-200 83-136 (220)
150 TIGR02742 TrbC_Ftype type-F co 27.9 98 0.0021 24.1 3.9 31 148-181 2-32 (130)
151 PF01884 PcrB: PcrB family; I 27.9 2.2E+02 0.0048 24.6 6.4 51 143-200 30-80 (230)
152 PRK12595 bifunctional 3-deoxy- 27.7 1.6E+02 0.0035 27.4 5.9 80 157-241 168-263 (360)
153 cd02812 PcrB_like PcrB_like pr 27.5 3.1E+02 0.0068 23.5 7.2 71 131-211 12-90 (219)
154 cd04726 KGPDC_HPS 3-Keto-L-gul 27.4 1.2E+02 0.0025 25.3 4.6 56 144-202 76-133 (202)
155 PRK00278 trpC indole-3-glycero 27.3 2.2E+02 0.0048 25.0 6.5 69 133-207 123-192 (260)
156 PF00070 Pyr_redox: Pyridine n 27.2 1.1E+02 0.0024 20.9 3.9 42 53-95 10-57 (80)
157 TIGR02493 PFLA pyruvate format 27.1 3.9E+02 0.0085 22.7 10.5 82 147-234 67-159 (235)
158 COG2873 MET17 O-acetylhomoseri 26.8 1.9E+02 0.004 27.1 5.9 38 59-98 95-132 (426)
159 COG0378 HypB Ni2+-binding GTPa 26.7 3E+02 0.0065 23.3 6.6 47 191-243 139-186 (202)
160 TIGR01745 asd_gamma aspartate- 26.6 5.3E+02 0.012 24.1 10.7 97 67-185 2-100 (366)
161 PRK14727 putative mercuric red 26.6 1E+02 0.0022 29.8 4.7 18 5-22 7-24 (479)
162 PRK01018 50S ribosomal protein 26.5 1.1E+02 0.0025 22.4 3.9 33 144-179 31-63 (99)
163 PRK13600 putative ribosomal pr 26.3 1.5E+02 0.0033 21.1 4.3 36 144-182 28-63 (84)
164 COG0136 Asd Aspartate-semialde 25.9 5.3E+02 0.011 23.8 11.8 97 66-182 2-98 (334)
165 PRK15063 isocitrate lyase; Pro 25.7 4.5E+02 0.0098 25.1 8.4 79 135-241 267-349 (428)
166 KOG3361|consensus 25.6 77 0.0017 24.6 2.8 62 267-330 85-149 (157)
167 PRK03673 hypothetical protein; 25.5 2.9E+02 0.0063 26.1 7.2 48 53-103 22-69 (396)
168 PF09673 TrbC_Ftype: Type-F co 25.0 1.1E+02 0.0023 23.2 3.5 30 149-181 2-31 (113)
169 PRK12457 2-dehydro-3-deoxyphos 24.8 2.3E+02 0.0049 25.3 5.9 82 158-245 73-169 (281)
170 PRK07414 cob(I)yrinic acid a,c 24.8 3.4E+02 0.0073 22.5 6.6 49 144-200 114-170 (178)
171 PF02659 DUF204: Domain of unk 24.7 1.5E+02 0.0033 19.7 4.0 13 273-285 4-16 (67)
172 PRK06683 hypothetical protein; 24.5 1.5E+02 0.0032 21.0 4.0 34 144-180 26-59 (82)
173 TIGR00762 DegV EDD domain prot 24.3 85 0.0019 27.8 3.4 91 214-306 61-153 (275)
174 COG2248 Predicted hydrolase (m 23.8 5.2E+02 0.011 22.9 9.0 51 104-156 162-212 (304)
175 cd01409 SIRT4 SIRT4: Eukaryoti 23.5 1.4E+02 0.0031 26.3 4.6 51 131-184 190-242 (260)
176 cd01413 SIR2_Af2 SIR2_Af2: Arc 23.5 1.5E+02 0.0033 25.3 4.7 50 132-184 158-209 (222)
177 cd00562 NifX_NifB This CD repr 23.4 1.5E+02 0.0032 21.2 4.1 39 51-95 47-85 (102)
178 PF11167 DUF2953: Protein of u 22.5 61 0.0013 20.6 1.6 18 268-285 2-19 (53)
179 PRK10892 D-arabinose 5-phospha 22.5 5.8E+02 0.012 23.0 11.4 111 135-259 35-147 (326)
180 COG2876 AroA 3-deoxy-D-arabino 22.2 3.4E+02 0.0074 24.1 6.4 85 160-250 97-196 (286)
181 PRK06197 short chain dehydroge 22.2 1.7E+02 0.0036 26.1 4.9 23 51-73 26-48 (306)
182 PF03853 YjeF_N: YjeF-related 22.1 1.4E+02 0.0031 24.2 4.0 45 49-94 36-83 (169)
183 PRK08641 sdhA succinate dehydr 22.0 1.2E+02 0.0027 30.3 4.3 23 50-72 11-33 (589)
184 PRK05968 hypothetical protein; 21.9 6.6E+02 0.014 23.4 11.9 37 143-182 145-185 (389)
185 cd01483 E1_enzyme_family Super 21.9 3.8E+02 0.0082 20.7 8.8 34 142-179 86-119 (143)
186 cd00615 Orn_deC_like Ornithine 21.7 5.6E+02 0.012 22.6 9.7 50 130-182 139-191 (294)
187 PRK06444 prephenate dehydrogen 21.7 4.6E+02 0.01 22.0 7.1 24 68-94 3-26 (197)
188 PRK14101 bifunctional glucokin 21.7 2.3E+02 0.0051 28.6 6.3 98 130-239 452-550 (638)
189 PRK08133 O-succinylhomoserine 21.6 6.7E+02 0.014 23.4 10.9 36 144-182 145-184 (390)
190 PRK08114 cystathionine beta-ly 21.6 6.9E+02 0.015 23.6 10.6 53 45-98 79-132 (395)
191 TIGR00708 cobA cob(I)alamin ad 21.4 3.6E+02 0.0078 22.2 6.2 49 144-200 96-152 (173)
192 cd01012 YcaC_related YcaC rela 21.4 2.2E+02 0.0048 22.6 5.0 20 158-180 23-42 (157)
193 cd01410 SIRT7 SIRT7: Eukaryoti 21.3 2.5E+02 0.0054 23.7 5.5 46 136-184 146-193 (206)
194 PRK12333 nucleoside triphospha 21.2 1.5E+02 0.0032 25.1 3.9 29 270-300 165-193 (204)
195 PRK13396 3-deoxy-7-phosphohept 21.2 2.8E+02 0.0061 25.7 6.1 79 158-241 152-246 (352)
196 cd00561 CobA_CobO_BtuR ATP:cor 21.2 4.4E+02 0.0095 21.3 6.6 49 144-200 94-150 (159)
197 PRK09330 cell division protein 21.1 7E+02 0.015 23.5 10.8 126 48-200 19-164 (384)
198 TIGR01093 aroD 3-dehydroquinat 21.0 5.3E+02 0.011 22.0 8.8 89 145-245 92-193 (228)
199 KOG0053|consensus 21.0 3.1E+02 0.0067 26.0 6.3 48 131-181 147-199 (409)
200 cd02752 MopB_Formate-Dh-Na-lik 20.9 6.6E+02 0.014 25.6 9.2 83 143-230 167-267 (649)
201 PRK13762 tRNA-modifying enzyme 20.5 6.6E+02 0.014 22.9 10.8 87 147-236 131-226 (322)
No 1
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=1.1e-50 Score=368.45 Aligned_cols=303 Identities=32% Similarity=0.477 Sum_probs=275.5
Q ss_pred CCcEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCC
Q psy14735 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (340)
Q Consensus 14 ~~~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi 93 (340)
|++|+++|++++|+++.++++|.++..++.......+||++.|+|++|++||.++.++|.+|+|.+|+.+++.|++ .||
T Consensus 2 m~~i~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~-~gV 80 (306)
T PRK11142 2 MGKLVVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAK-DGI 80 (306)
T ss_pred CCcEEEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHH-cCC
Confidence 4679999999999999999999999999888999999999999999999999999999999999999999999999 999
Q ss_pred cccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccC
Q psy14735 94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLES 173 (340)
Q Consensus 94 ~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~ 173 (340)
+++++...++.+|+.+++.++++|+|++..+.++...+++++++.+.+.+++++++++++..+.+...++++.+ +++
T Consensus 81 ~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a---~~~ 157 (306)
T PRK11142 81 DTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIANADALLMQLETPLETVLAAAKIA---KQH 157 (306)
T ss_pred ChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhccCCEEEEeCCCCHHHHHHHHHHH---HHc
Confidence 99999888888999999999988999988888877888888887655668999999999887878889999999 899
Q ss_pred CceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCc
Q psy14735 174 RAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPR 253 (340)
Q Consensus 174 ~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~ 253 (340)
+.++++|+.+.. .....+++++|++++|++|++.+++.+..+.++..++++.+.+.|++.++||+|++|+++++++ +
T Consensus 158 g~~v~~d~~~~~-~~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~--~ 234 (306)
T PRK11142 158 GTKVILNPAPAR-ELPDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLITLGSRGVWLSENG--E 234 (306)
T ss_pred CCEEEEECCCCc-ccCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHHhCCCeEEEEECCCcEEEEeCC--c
Confidence 999999997532 2446789999999999999999999766666677788888888899999999999999998776 6
Q ss_pred eEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhhh
Q psy14735 254 LKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNLF 326 (340)
Q Consensus 254 ~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l~ 326 (340)
.+++|+ ++++++||+||||+|.|||++++++ |+++++|+++|+++|+.+|++.|+.+++|+.+++++++.
T Consensus 235 ~~~~~~-~~v~vvDt~GAGDaF~Agfi~~l~~--g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~~~~~~ 304 (306)
T PRK11142 235 GQRVPG-FRVQAVDTIAAGDTFNGALVTALLE--GKPLPEAIRFAHAAAAIAVTRKGAQPSIPWREEIDAFLQ 304 (306)
T ss_pred ceeccC-CCcccccCCCchhHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCCcccccCCCHHHHHHHHh
Confidence 788998 8889999999999999999999999 999999999999999999999999888899999988775
No 2
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=5.3e-50 Score=367.09 Aligned_cols=309 Identities=32% Similarity=0.552 Sum_probs=276.9
Q ss_pred cCCCCCcEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhh
Q psy14735 10 NLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRK 89 (340)
Q Consensus 10 ~~~~~~~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~ 89 (340)
+..++++|+++|.+++|+++.++.+|.++++++.+.....+||.+.|+|++|++||.++.++|.+|+|.+|+.+++.|++
T Consensus 11 ~~~~~~~vlviG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~l~~ 90 (326)
T PTZ00292 11 GGEAEPDVVVVGSSNTDLIGYVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNFKR 90 (326)
T ss_pred cCCCCCCEEEEccceeeEEEecCCCCCCCCceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHHHHHHH
Confidence 34556889999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred hcCCcccceEeeCCCCCceEEEEEc-CCCCeEEEEeCCcCCCCCHHHHHHHHhhccC-CcEEEEeCCCCHHHHHHHHHhc
Q psy14735 90 YNSINTKYIWLLQDVTTGVCSKVIS-NKGTHQTNIIPGANTYLSASDIDAAKNLLLK-AKVIMFQGETPWETTLYCLSKL 167 (340)
Q Consensus 90 ~~gi~~~~v~~~~~~~t~~~~i~~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~v~i~~~~~~~~~~~~~~~a 167 (340)
.||+++++...++.+|+.++++++ ++|+++++.+++++..+++++++.....+.. ++++++++..+.+...++++.+
T Consensus 91 -~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~a 169 (326)
T PTZ00292 91 -NGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDAQTDNIQNICKYLICQNEIPLETTLDALKEA 169 (326)
T ss_pred -cCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHHHHHHhhhhCCEEEECCCCCHHHHHHHHHHH
Confidence 999999997777889999999998 7899998888888888898888765555777 9999998888888888999999
Q ss_pred hhcccCCceEEEeCCCCCC----CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCc
Q psy14735 168 HVSLESRAKIIVNPSPAVY----PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG 243 (340)
Q Consensus 168 ~~~~~~~~~v~~d~~~~~~----~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G 243 (340)
++++.++++|+++... +.+.++++++|++++|++|++.+++....+.++..++++.+.+.+++.++||+|++|
T Consensus 170 ---~~~g~~v~~D~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G 246 (326)
T PTZ00292 170 ---KERGCYTVFNPAPAPKLAEVEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVENVIITLGANG 246 (326)
T ss_pred ---HHcCCEEEEECCCCccccccccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 8899999999975432 356788899999999999999999876666667778888888889999999999999
Q ss_pred eEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcch
Q psy14735 244 VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPD 323 (340)
Q Consensus 244 ~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~ 323 (340)
++++++++ ..+++|+ ++++++||+||||+|.|||++++++ |+++++|+++|+++|+.++++.|+..++|+.+++++
T Consensus 247 a~~~~~~~-~~~~~~~-~~~~vvDttGAGDaF~ag~l~~l~~--g~~~~~al~~a~a~Aa~~v~~~G~~~~~~~~~~~~~ 322 (326)
T PTZ00292 247 CLIVEKEN-EPVHVPG-KRVKAVDTTGAGDCFVGSMAYFMSR--GKDLKESCKRANRIAAISVTRHGTQSSYPHPSELPA 322 (326)
T ss_pred EEEEeCCC-ceEEccC-CccccCCCcchHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCCCccccCCCHHHHHH
Confidence 99998753 4588998 8889999999999999999999999 999999999999999999999999988999999988
Q ss_pred hhh
Q psy14735 324 NLF 326 (340)
Q Consensus 324 ~l~ 326 (340)
+++
T Consensus 323 ~~~ 325 (326)
T PTZ00292 323 DVK 325 (326)
T ss_pred Hhc
Confidence 775
No 3
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=4.6e-48 Score=349.02 Aligned_cols=292 Identities=38% Similarity=0.579 Sum_probs=266.8
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
+|+++|.+++|++..++++|.+++.++......++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++ .||++
T Consensus 1 ~il~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~-~gi~~ 79 (292)
T cd01174 1 KVVVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLENLRE-EGIDV 79 (292)
T ss_pred CEEEEeeceeEEEEEecCCCCCCCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHHHHHH-cCCCc
Confidence 58999999999999999989999888888889999999999999999999999999999999999999999999 99999
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCCc
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRA 175 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~ 175 (340)
+++...++.+|+.+++.++++|+|++..+.+++..+++++++.+.+.++.++++++++..+.+....+++.+ ++++.
T Consensus 80 ~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a---~~~g~ 156 (292)
T cd01174 80 SYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDAALELIAAADVLLLQLEIPLETVLAALRAA---RRAGV 156 (292)
T ss_pred eEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHHHHHhcccCCEEEEeCCCCHHHHHHHHHHH---HhcCC
Confidence 999777788999999999988999988887777788888888766678999999999988888899999999 99999
Q ss_pred eEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceE
Q psy14735 176 KIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLK 255 (340)
Q Consensus 176 ~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~ 255 (340)
++++|+.+.. .....+++++|++++|++|++.+++....+.++..++++.+.+.|++.+++|+|++|+++++++ ..+
T Consensus 157 ~v~~D~~~~~-~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~--~~~ 233 (292)
T cd01174 157 TVILNPAPAR-PLPAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVTLGAKGALLASGG--EVE 233 (292)
T ss_pred EEEEeCCCcC-cCcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCceEEEeCC--ceE
Confidence 9999998653 2346889999999999999999999876666677888899988999999999999999999876 578
Q ss_pred EEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCC
Q psy14735 256 TITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPD 317 (340)
Q Consensus 256 ~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~ 317 (340)
++|+ ++++++|++||||+|.|||++++++ |+++++|+++|+++|+.++++.|+..++|+
T Consensus 234 ~~~~-~~~~~vdt~GaGD~F~ag~l~~l~~--g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~ 292 (292)
T cd01174 234 HVPA-FKVKAVDTTGAGDTFIGALAAALAR--GLSLEEAIRFANAAAALSVTRPGAQPSIPT 292 (292)
T ss_pred EecC-CCcccCCCCCcHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCcCCCCCCCC
Confidence 8898 7889999999999999999999999 999999999999999999999999888774
No 4
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=2.7e-46 Score=337.65 Aligned_cols=293 Identities=37% Similarity=0.551 Sum_probs=266.1
Q ss_pred cccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcccceEe
Q psy14735 21 GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWL 100 (340)
Q Consensus 21 G~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v~~ 100 (340)
|+.++|+++.++.+|.+++.++......++||++.|+|++|++||.++.++|.+|+|.+|+.+.+.|++ .||+++++..
T Consensus 1 G~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~-~gi~~~~~~~ 79 (293)
T TIGR02152 1 GSINMDLVLRTDRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKS-NGIDTEYVGT 79 (293)
T ss_pred CCceEeEEEEeCCCCCCCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHH-cCCCeeEEEE
Confidence 788999999999999999999999999999999999999999999999999999999999999999999 9999999987
Q ss_pred eCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEe
Q psy14735 101 LQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVN 180 (340)
Q Consensus 101 ~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d 180 (340)
.++.+|+.++++++++|+++++.+.+++..+++++++.+.+.++.++++++++..+.+....+++.+ ++++.++++|
T Consensus 80 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~D 156 (293)
T TIGR02152 80 VKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAEALIAESDIVLLQLEIPLETVLEAAKIA---KKHGVKVILN 156 (293)
T ss_pred cCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHHHHhhhccCCEEEEecCCCHHHHHHHHHHH---HHcCCEEEEE
Confidence 7778999999999988999888777777889998888766678899999999888888899999999 8899999999
Q ss_pred CCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccC
Q psy14735 181 PSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVD 260 (340)
Q Consensus 181 ~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~ 260 (340)
+.+.......++++++|++++|++|++.+++....+.++..+.++.+.++|++.++||+|++|+++++.+ +.+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~--~~~~~~~- 233 (293)
T TIGR02152 157 PAPAIKDLDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIITLGSKGALLVSKD--ESKLIPA- 233 (293)
T ss_pred CCcCcccchHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHHcCCCeEEEEeCCCceEEEeCC--ceeEccC-
Confidence 9865333346889999999999999999999876666778888999998999999999999999999876 6778888
Q ss_pred CCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcc
Q psy14735 261 HVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLP 322 (340)
Q Consensus 261 ~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~ 322 (340)
++++++||+||||+|+|||++++++ |+++++|+++|+.+|+.++++.|+..++|+.++++
T Consensus 234 ~~~~~vdt~GAGDaf~Ag~l~~l~~--g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~~ 293 (293)
T TIGR02152 234 FKVKAVDTTAAGDTFNGAFAVALAE--GKSLEDAIRFANAAAAISVTRKGAQSSIPYLEEVE 293 (293)
T ss_pred CCCceeCCCCcHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHcccCcccCCCChHHcC
Confidence 7889999999999999999999999 99999999999999999999999988788877653
No 5
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=5.3e-46 Score=338.56 Aligned_cols=304 Identities=17% Similarity=0.210 Sum_probs=257.7
Q ss_pred CCCcEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcC
Q psy14735 13 DEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNS 92 (340)
Q Consensus 13 ~~~~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~g 92 (340)
.++.|+++|+.++|++..++..+.++..+ ......++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++ .|
T Consensus 3 ~~~~i~~iG~~~vD~~~~~~~~~~~~~~~-~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~~l~~-~g 80 (313)
T PRK09850 3 EKDYVVIIGSANIDVAGYSHESLNYADSN-PGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQ-SG 80 (313)
T ss_pred CCCcEEEECcEEEeeeccCCCcCcCCCCC-ceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHH-cC
Confidence 45799999999999998866544433333 34577889999999999999999999999999999999999999999 99
Q ss_pred CcccceEeeCCCCCceEEEEEcCCCCeEEEEeC-CcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcc
Q psy14735 93 INTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP-GANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSL 171 (340)
Q Consensus 93 i~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~ 171 (340)
|+++++...++.+|+.++++++++|++++.+.. +....++++.++...+.+++++++++++..+.+....+++.+
T Consensus 81 Vd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---- 156 (313)
T PRK09850 81 VYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQRAKVIVADCNISEEALAWILDNA---- 156 (313)
T ss_pred CCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHhc----
Confidence 999998777777899999999999999876542 344566666665544567899999998888877777776654
Q ss_pred cCCceEEEeCCCCCC-CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecC
Q psy14735 172 ESRAKIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRD 250 (340)
Q Consensus 172 ~~~~~v~~d~~~~~~-~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 250 (340)
.+.++++|+.+.+. ..+.++++++|++++|++|++.+++....+.+++.++++.+.+.|++.+|||+|++|+++++++
T Consensus 157 -~g~~v~~D~~~~~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~ 235 (313)
T PRK09850 157 -ANVPVFVDPVSAWKCVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGVYYSDIS 235 (313)
T ss_pred -cCCCEEEEcCCHHHHHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCceEEEEcCC
Confidence 37899999986421 2345778899999999999999999766666778888888888899999999999999999864
Q ss_pred CCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhhhh
Q psy14735 251 NPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNLFS 327 (340)
Q Consensus 251 ~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l~~ 327 (340)
+ +..++|+ ++++++|||||||+|.|||++++++ |+++++|+++|+++|+.+++..++.+..|+.+++++++.+
T Consensus 236 ~-~~~~~~~-~~~~vvDttGAGDaF~agfi~~l~~--g~~~~eal~~a~a~aa~~~~~~~~~~~~~~~~~~~~~~~~ 308 (313)
T PRK09850 236 G-ESGWSAP-IKTNVINVTGAGDAMMAGLASCWVD--GMPFAESVRFAQGCSSMALSCEYTNNPDLSIANVISLVEN 308 (313)
T ss_pred C-CeEecCC-CCcccccCCCcHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCCCCCcccCHHHHHHHHHH
Confidence 3 4667888 7889999999999999999999999 9999999999999999999999999999999999988864
No 6
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.7e-46 Score=356.91 Aligned_cols=305 Identities=19% Similarity=0.249 Sum_probs=252.4
Q ss_pred CCCCcEEEEcccccceeeecCCCCCCCCeee-----------cCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhh
Q psy14735 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVK-----------GYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFG 80 (340)
Q Consensus 12 ~~~~~I~viG~~~iD~~~~~~~~~~~~~~~~-----------~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g 80 (340)
++|++|+++|++++|+++.++++|.+++... .......+|| ++|+|++|++||.++.++|.+|+|.+|
T Consensus 70 ~~~~~vl~lG~~~vD~i~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D~~G 148 (470)
T PLN02341 70 GKEIDVATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDEIYG 148 (470)
T ss_pred cccccEEEECCcceeEEEecCCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCcHHH
Confidence 5567899999999999999999998875321 1234455788 689999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcccceEeeC--------CCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHH----HHHHhhccCCcE
Q psy14735 81 KSYLEELRKYNSINTKYIWLLQ--------DVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI----DAAKNLLLKAKV 148 (340)
Q Consensus 81 ~~i~~~l~~~~gi~~~~v~~~~--------~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~ 148 (340)
+.+++.|++ .||+++++.... ..+|+.++++++++|++.+..............+ +...+.++++++
T Consensus 149 ~~i~~~L~~-~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~adi 227 (470)
T PLN02341 149 KFLLDVLAE-EGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQSKA 227 (470)
T ss_pred HHHHHHHHH-cCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHHhhhhcCCE
Confidence 999999999 999999886554 2469999999999898765433222111111111 112245789999
Q ss_pred EEEeCC----CCHHHHHHHHHhchhcccCCceEEEeCCCCC---C-------CCchhhhhcCcEEEeCHHHHHHhhcCCC
Q psy14735 149 IMFQGE----TPWETTLYCLSKLHVSLESRAKIIVNPSPAV---Y-------PLNPIVMILADIICINEQEAEIITDMKI 214 (340)
Q Consensus 149 v~i~~~----~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~---~-------~~~~~~l~~~dil~~n~~E~~~l~~~~~ 214 (340)
+++++. .+.+...++++.+ ++.+.++++|+.+.. | +.+..+++.+|++++|++|++.++|.
T Consensus 228 v~lsg~~~~~~~~~~~~~~~~~A---k~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~-- 302 (470)
T PLN02341 228 LFCNGYVFDELSPSAIASAVDYA---IDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGI-- 302 (470)
T ss_pred EEEeceeCCcCCHHHHHHHHHHH---HHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCC--
Confidence 999874 4678889999999 999999999997541 1 23567899999999999999999986
Q ss_pred CChhhHHHHHHHHHhcC--CCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHH
Q psy14735 215 NNEEDLADCMEKLLDMK--CNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLG 292 (340)
Q Consensus 215 ~~~~~~~~~~~~l~~~g--~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~ 292 (340)
++..++++.+.+.+ .+.||||+|++|+++++++ +.+++|+ ++++++|||||||+|.|||++++++ |++++
T Consensus 303 ---~~~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~--~~~~vpa-~~v~vVDTtGAGDaF~Agfl~gll~--G~~l~ 374 (470)
T PLN02341 303 ---RNPILAGQELLRPGIRTKWVVVKMGSKGSILVTRS--SVSCAPA-FKVNVVDTVGCGDSFAAAIALGYIH--NLPLV 374 (470)
T ss_pred ---CCHHHHHHHHHhcCCCCCEEEEeeCCCCeEEEECC--eeEEeCC-CCcCCCCCcCccHHHHHHHHHHHHc--CCCHH
Confidence 45677888887766 5899999999999999876 6788999 8899999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCccCcchhhhhcccc
Q psy14735 293 EIILRSCHVARQSLFNVGLQNSFPDKETLPDNLFSLKCE 331 (340)
Q Consensus 293 ~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l~~~~~~ 331 (340)
+|+++|+++|+++|+..|+..++|+.++++++|.....+
T Consensus 375 eal~~A~a~aA~~v~~~Ga~~~~p~~~ev~~~l~~~~~~ 413 (470)
T PLN02341 375 NTLTLANAVGAATAMGCGAGRNVATLEKVLELLRASNLN 413 (470)
T ss_pred HHHHHHHHHHHHHHcCcCCCCCCCCHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999875543
No 7
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.8e-46 Score=349.09 Aligned_cols=308 Identities=20% Similarity=0.248 Sum_probs=260.6
Q ss_pred CCCCcEEEEcccccceeeecCC-------CCCCC-------------CeeecCceeeecCChHHHHHHHHHhcC------
Q psy14735 12 KDEADIVVVGSCLVEFITYVQT-------LPKPE-------------ETVKGYHFEQRFSGKGANQCVAAAKLR------ 65 (340)
Q Consensus 12 ~~~~~I~viG~~~iD~~~~~~~-------~~~~~-------------~~~~~~~~~~~~GG~~~n~a~~l~~lG------ 65 (340)
-+..+|+++|++++|++..+++ +|+++ +++........+||++.|+|++|++||
T Consensus 67 ~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~AvalarLG~~~~~~ 146 (426)
T PLN02813 67 PERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALARLGSQSAAG 146 (426)
T ss_pred CCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHHHhccccccC
Confidence 4457899999999999999998 99888 344566778899999999999999999
Q ss_pred --CceeEEEEecCChhhHHHHHHHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhc
Q psy14735 66 --ASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLL 143 (340)
Q Consensus 66 --~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 143 (340)
.++.++|.+|+|.+|+.+++.|++ .||++.++.+. +.+|+.++++++++|+|+++.+.+++..++.+++. .+.+
T Consensus 147 ~~~~v~~ig~VG~D~~G~~i~~~L~~-~GVd~~~~~~~-~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~~--~~~i 222 (426)
T PLN02813 147 PALNVAMAGSVGSDPLGDFYRTKLRR-ANVHFLSQPVK-DGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSCL--ASAI 222 (426)
T ss_pred CCCcEEEEEEeCCChHHHHHHHHHHH-cCCcccceecC-CCCceEEEEEEcCCCCceeeeccCchhhCCccccC--HHHH
Confidence 799999999999999999999999 99999887644 56899999999999999999888877666655442 2347
Q ss_pred cCCcEEEEeCC---CC--HHHHHHHHHhchhcccCCceEEEeCCCCC-----C-CCchhhhhcCcEEEeCHHHHHHhhcC
Q psy14735 144 LKAKVIMFQGE---TP--WETTLYCLSKLHVSLESRAKIIVNPSPAV-----Y-PLNPIVMILADIICINEQEAEIITDM 212 (340)
Q Consensus 144 ~~~~~v~i~~~---~~--~~~~~~~~~~a~~~~~~~~~v~~d~~~~~-----~-~~~~~~l~~~dil~~n~~E~~~l~~~ 212 (340)
++++++++++. .+ .+...++++.+ +++++++++|+++.. + .....+++++|++++|++|++.+++.
T Consensus 223 ~~adiv~l~g~~~~~~~~~~~~~~~~~~a---k~~g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~ 299 (426)
T PLN02813 223 SKSRVLVVEGYLWELPQTIEAIAQACEEA---HRAGALVAVTASDVSCIERHRDDFWDVMGNYADILFANSDEARALCGL 299 (426)
T ss_pred hcCCEEEEEeeecCCCchHHHHHHHHHHH---HHcCCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEeCHHHHHHHhCC
Confidence 89999999873 23 36678888888 899999999987642 1 12234568999999999999999885
Q ss_pred CCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCC-CH
Q psy14735 213 KINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQL-PL 291 (340)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~-~~ 291 (340)
.. .++..++++.|. .+++.+|||+|++|++++.++ +.+++|+ ++++++|||||||+|.|||++++++ |+ ++
T Consensus 300 ~~--~~~~~~a~~~L~-~~~~~VVVT~G~~Ga~~~~~~--~~~~~pa-~~v~vVDTtGAGDAF~Agfl~~l~~--G~~~l 371 (426)
T PLN02813 300 GS--EESPESATRYLS-HFCPLVSVTDGARGSYIGVKG--EAVYIPP-SPCVPVDTCGAGDAYAAGILYGLLR--GVSDL 371 (426)
T ss_pred CC--CCCHHHHHHHHH-cCCCEEEEEeCCCCeEEEECC--EEEEeCC-CCCCcccCCChHHHHHHHHHHHHHc--CCCCH
Confidence 31 234556666665 589999999999999998776 6889999 8899999999999999999999999 99 99
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCccCcchhhhhccccccc
Q psy14735 292 GEIILRSCHVARQSLFNVGLQNSFPDKETLPDNLFSLKCELNT 334 (340)
Q Consensus 292 ~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l~~~~~~~~~ 334 (340)
++|+++|+++|+.+|++.|+..++|+.+++.+.+..+.....+
T Consensus 372 ~~al~~A~a~Aa~~v~~~Ga~~~~~~~~e~~~~~~~~~~~~~~ 414 (426)
T PLN02813 372 RGMGELAARVAATVVGQQGTRLRVEDAVELAESFALHLDGSDM 414 (426)
T ss_pred HHHHHHHHHHHHHHHcccCCCcCHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999999887766543
No 8
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=4.5e-45 Score=328.25 Aligned_cols=284 Identities=23% Similarity=0.313 Sum_probs=244.6
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
+|+++|++++|++..++.+|.+++.++......++||+++|+|.+|++||.++.++|.+|+|.+|+.+++.|++ .||++
T Consensus 1 ~i~~iG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~-~gI~~ 79 (284)
T cd01945 1 RVLGVGLAVLDLIYLVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAA-EGVDT 79 (284)
T ss_pred CEEEECcceeEEEEEeccCCCCCCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHH-cCCCc
Confidence 68999999999999999999998888888999999999999999999999999999999999999999999999 99999
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCCc
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRA 175 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~ 175 (340)
+++...++.+|+.+++ .+.+|+++...+.+....+..++++.. .+++++++++++..+ +...++++.+ ++.+.
T Consensus 80 ~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~i~~~~~-~~~~~~~~~~---~~~g~ 152 (284)
T cd01945 80 SFIVVAPGARSPISSI-TDITGDRATISITAIDTQAAPDSLPDA--ILGGADAVLVDGRQP-EAALHLAQEA---RARGI 152 (284)
T ss_pred cceeecCCCCCccEEE-EccCCCceEEEecCCCCCCCcccCCHH--HhCcCCEEEEcCCCH-HHHHHHHHHH---HHcCC
Confidence 9998877778888776 455677776666666666666666542 378999999988754 6788889999 88888
Q ss_pred eEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceE
Q psy14735 176 KIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLK 255 (340)
Q Consensus 176 ~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~ 255 (340)
++++|..+.......++++++|++++|++|++.+++.. +. ++++.+.+.+++.++||+|++|++++++++ +.+
T Consensus 153 ~v~~~~~~~~~~~~~~~~~~~dil~~n~~e~~~l~~~~-----~~-~~~~~l~~~~~~~vivt~G~~G~~~~~~~~-~~~ 225 (284)
T cd01945 153 PIPLDLDGGGLRVLEELLPLADHAICSENFLRPNTGSA-----DD-EALELLASLGIPFVAVTLGEAGCLWLERDG-ELF 225 (284)
T ss_pred CeeEeccCCcccchHHHhccCCEEEeChhHHhhhcCCC-----HH-HHHHHHHhcCCcEEEEEECCCCeEEEcCCC-CEE
Confidence 77766544332225688999999999999999998862 22 677777788999999999999999998333 688
Q ss_pred EEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCC
Q psy14735 256 TITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPD 317 (340)
Q Consensus 256 ~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~ 317 (340)
++|+ ++++++||+||||+|+|||++++++ |+++++|+++|+++|+.+|++.|+.+++|+
T Consensus 226 ~~~~-~~~~vvDt~GAGDaf~ag~l~~l~~--g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~ 284 (284)
T cd01945 226 HVPA-FPVEVVDTTGAGDVFHGAFAHALAE--GMPLREALRFASAAAALKCRGLGGRAGLPT 284 (284)
T ss_pred ecCC-CccccccCCCcHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 8999 7889999999999999999999999 999999999999999999999999888874
No 9
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=1.5e-45 Score=339.86 Aligned_cols=298 Identities=18% Similarity=0.233 Sum_probs=248.6
Q ss_pred CCCCCcEEEEcccccceeeecCC------CCCCCCeeecCce--------------eeecCChHHHHHHHHHhcC---C-
Q psy14735 11 LKDEADIVVVGSCLVEFITYVQT------LPKPEETVKGYHF--------------EQRFSGKGANQCVAAAKLR---A- 66 (340)
Q Consensus 11 ~~~~~~I~viG~~~iD~~~~~~~------~~~~~~~~~~~~~--------------~~~~GG~~~n~a~~l~~lG---~- 66 (340)
.|+.++|+++|++++|+++.+++ .|.+|+....+.. +.++||++.|+|+++++|| .
T Consensus 2 ~~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~ 81 (345)
T PTZ00247 2 SSAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKG 81 (345)
T ss_pred CCCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCC
Confidence 46778999999999999999985 4788877766553 7899999999999999875 5
Q ss_pred ceeEEEEecCChhhHHHHHHHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHH--Hhhcc
Q psy14735 67 SVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAA--KNLLL 144 (340)
Q Consensus 67 ~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~--~~~~~ 144 (340)
++.++|.+|+|.+|+.+++.|++ .||+++++. ..+.+|+.+++++++ |+|+++.+.+++..+++++++.. .+.++
T Consensus 82 ~v~~ig~vG~D~~G~~i~~~l~~-~GVd~~~~~-~~~~~Tg~~~i~v~~-~~r~~~~~~ga~~~l~~~~i~~~~~~~~l~ 158 (345)
T PTZ00247 82 FVCYVGCVGDDRFAEILKEAAEK-DGVEMLFEY-TTKAPTGTCAVLVCG-KERSLVANLGAANHLSAEHMQSHAVQEAIK 158 (345)
T ss_pred cEEEEEEeccchhHHHHHHHHHH-cCCeeeccc-cCCCCcEEEEEEEcC-CCcccccCcchhhcCChHHcCcHHHHHHHh
Confidence 99999999999999999999999 999998875 556789999998874 78888877788888888877642 23578
Q ss_pred CCcEEEEeCC---CCHHHHHHHHHhchhcccCCceEEEeCCCCC-----CCCchhhhhcCcEEEeCHHHHHHhhcCCCCC
Q psy14735 145 KAKVIMFQGE---TPWETTLYCLSKLHVSLESRAKIIVNPSPAV-----YPLNPIVMILADIICINEQEAEIITDMKINN 216 (340)
Q Consensus 145 ~~~~v~i~~~---~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~-----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~ 216 (340)
+++++++++. .+.+...++++.+ +++++++++|++... ++.+.++++++|++++|++|++.|+|....+
T Consensus 159 ~~~~v~~~g~~~~~~~~~~~~~~~~a---~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~~~ 235 (345)
T PTZ00247 159 TAQLYYLEGFFLTVSPNNVLQVAKHA---RESGKLFCLNLSAPFISQFFFERLLQVLPYVDILFGNEEEAKTFAKAMKWD 235 (345)
T ss_pred hCCEEEEEEEEecccHHHHHHHHHHH---HHcCCEEEEECCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhhccCCC
Confidence 9999999874 4678899999999 999999999987432 1235678899999999999999999842112
Q ss_pred hhhHHHHHHHHHh------cCCCEEEEEecCCceEEEecCCCceEEEccCCCc---CcccCCCcchHHHHHHHHHHHcCC
Q psy14735 217 EEDLADCMEKLLD------MKCNTVIITLGGSGVVYATRDNPRLKTITVDHVE---YPIESEGVGDCFVGALAYYLCYFP 287 (340)
Q Consensus 217 ~~~~~~~~~~l~~------~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~---~vvdttGaGDaF~ag~~~~l~~~~ 287 (340)
.++..++++.+.+ .+++.+|||+|++|+++++++ +.+++|+ +++ +++|||||||+|.|||++++++
T Consensus 236 ~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~--~~~~~~~-~~v~~~~vVDTtGAGDaF~agfl~~l~~-- 310 (345)
T PTZ00247 236 TEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKD--GVTSVPV-PPLDQEKIVDTNGAGDAFVGGFLAQYAN-- 310 (345)
T ss_pred ccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECC--EEEEEec-cccCCCCccCCCChHHHHHHHHHHHHHc--
Confidence 2456667776654 247899999999999999876 5778888 666 5899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCc
Q psy14735 288 QLPLGEIILRSCHVARQSLFNVGLQNSFPDKETL 321 (340)
Q Consensus 288 g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v 321 (340)
|+++++|+++|+++|+++|++.|+. +|.+...
T Consensus 311 g~~~~~al~~a~~aAa~~v~~~Ga~--~~~~~~~ 342 (345)
T PTZ00247 311 GKDIDRCVEAGHYSAQVIIQHNGCT--YPEKPPF 342 (345)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCC--CCCCCCC
Confidence 9999999999999999999999986 3555443
No 10
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=1.7e-45 Score=335.22 Aligned_cols=284 Identities=28% Similarity=0.395 Sum_probs=247.4
Q ss_pred CcEEEEcccccceeeecCCCC------CCCCeeecC-----------ceeeecCChHHHHHHHHHhcCCceeEEEEecCC
Q psy14735 15 ADIVVVGSCLVEFITYVQTLP------KPEETVKGY-----------HFEQRFSGKGANQCVAAAKLRASVALISKLGND 77 (340)
Q Consensus 15 ~~I~viG~~~iD~~~~~~~~~------~~~~~~~~~-----------~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D 77 (340)
.+|+++|++++|+++.++++| .+++.+... .....+||++.|+|.+|++||.++.++|.+|+|
T Consensus 2 ~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D 81 (312)
T cd01168 2 YDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGRVGDD 81 (312)
T ss_pred ceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 579999999999999999988 557666653 467889999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCC---
Q psy14735 78 KFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGE--- 154 (340)
Q Consensus 78 ~~g~~i~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~--- 154 (340)
.+|+.+++.|++ .||+++++... +.+|+.++++++++|+|+++...++...+++++++. +.+++++++++++.
T Consensus 82 ~~g~~i~~~l~~-~GV~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~l~~~~~v~~~~~~~~ 157 (312)
T cd01168 82 KLGDFLLKDLRA-AGVDTRYQVQP-DGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDW--SLLAKAKYLYLEGYLLT 157 (312)
T ss_pred hhHHHHHHHHHH-CCCccccccCC-CCCceEEEEEEcCCCceeeecccchhhcCChhHCCH--HHHccCCEEEEEEEecC
Confidence 999999999999 99999988754 578999999999899999887777777888877754 34789999999874
Q ss_pred CCHHHHHHHHHhchhcccCCceEEEeCCCCC-----CCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHh
Q psy14735 155 TPWETTLYCLSKLHVSLESRAKIIVNPSPAV-----YPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD 229 (340)
Q Consensus 155 ~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~-----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~ 229 (340)
.+.+....+++.+ ++.+.++++|+.... ++.+.++++++|++++|++|++.+++.+ .++..++++.+.+
T Consensus 158 ~~~~~~~~~~~~a---~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~---~~~~~~~a~~l~~ 231 (312)
T cd01168 158 VPPEAILLAAEHA---KENGVKIALNLSAPFIVQRFKEALLELLPYVDILFGNEEEAEALAEAE---TTDDLEAALKLLA 231 (312)
T ss_pred CCHHHHHHHHHHH---HHcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCC---CCChHHHHHHHHh
Confidence 4558888999999 888999999997421 1234578899999999999999999852 2356678888998
Q ss_pred cCCCEEEEEecCCceEEEecCCCceEEEccCCC-cCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcc
Q psy14735 230 MKCNTVIITLGGSGVVYATRDNPRLKTITVDHV-EYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 230 ~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~-~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~ 308 (340)
++++.+|||+|++|+++++++ +.+++|+ ++ ++++|||||||+|.|||++++++ |+++++|+++|+++|+++|++
T Consensus 232 ~g~~~vvvt~G~~G~~~~~~~--~~~~~~~-~~~~~vvDttGAGDaf~ag~l~~l~~--g~~~~~a~~~a~~~Aa~~v~~ 306 (312)
T cd01168 232 LRCRIVVITQGAKGAVVVEGG--EVYPVPA-IPVEKIVDTNGAGDAFAGGFLYGLVQ--GEPLEECIRLGSYAAAEVIQQ 306 (312)
T ss_pred cCCCEEEEecCCCCeEEEECC--EEEeCCC-CCCCCcccCCchHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999866 6888998 77 89999999999999999999999 999999999999999999999
Q ss_pred cCCCC
Q psy14735 309 VGLQN 313 (340)
Q Consensus 309 ~g~~~ 313 (340)
.|+.+
T Consensus 307 ~G~~~ 311 (312)
T cd01168 307 LGPRL 311 (312)
T ss_pred cCCCC
Confidence 99753
No 11
>KOG2855|consensus
Probab=100.00 E-value=2.8e-45 Score=320.60 Aligned_cols=305 Identities=29% Similarity=0.430 Sum_probs=248.9
Q ss_pred cCCCCCcEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhh
Q psy14735 10 NLKDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRK 89 (340)
Q Consensus 10 ~~~~~~~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~ 89 (340)
..+.++.|+++|+.++|++..++.+|.++++.........+||.++|+|++++|||.++.|+|.||+|.+|..+.+.|++
T Consensus 5 ~~~~~~~vv~fGs~~~D~V~~~~~~p~~ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~~~L~~ 84 (330)
T KOG2855|consen 5 VYGEPPLVVVFGSMLIDFVPSTRRLPNAGETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLLDILKQ 84 (330)
T ss_pred cccCCceEEEeccceeeeeeccccCCCccccccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHHHHHhh
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhch-
Q psy14735 90 YNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLH- 168 (340)
Q Consensus 90 ~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~- 168 (340)
.+|+++++....+.+|++..+.+..+|++.+.++.+++....+...+...+.++.+.++++++..+.+......+.++
T Consensus 85 -~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ak~~~~q~ei~~~~~~~s~~~~~~ 163 (330)
T KOG2855|consen 85 -NGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKEAKVFHCQSEILIEEPMRSLHIAAV 163 (330)
T ss_pred -CCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhhccEEEEeeecCCcchhHHHHHhhh
Confidence 999999999999999999999999999999999988887777665554456789999999998877555544444440
Q ss_pred -hcccCCceEEEeCCCC--CC-------CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEE
Q psy14735 169 -VSLESRAKIIVNPSPA--VY-------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT 238 (340)
Q Consensus 169 -~~~~~~~~v~~d~~~~--~~-------~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt 238 (340)
..++.+.-+++||... +| ..+..++..+|++...++|++.++|.. .++. . +|..++.|.||||
T Consensus 164 ~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~---~~~~---~-~L~~~~~k~viVT 236 (330)
T KOG2855|consen 164 KVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIE---DDKI---L-KLWHMKLKLVIVT 236 (330)
T ss_pred hhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccCc---cchH---H-HHhccCCCEEEEE
Confidence 0034433333344332 12 123344555666666666666655541 0111 2 5777788999999
Q ss_pred ecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCC--CC---HHHHHHHHHHHHHHHhcccCCCC
Q psy14735 239 LGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQ--LP---LGEIILRSCHVARQSLFNVGLQN 313 (340)
Q Consensus 239 ~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g--~~---~~~a~~~a~~~Aa~~~~~~g~~~ 313 (340)
+|++|+.+++++... .++|+ +++++||||||||+|+|||+..|.+ | .+ +++++++|+++++.+++..|+.+
T Consensus 237 lG~kG~~y~tk~~~~-~~v~~-~~V~~VDtTGAGDsFvgal~~~L~~--~~~~~~~~L~~~l~~A~a~~ai~v~~~Ga~~ 312 (330)
T KOG2855|consen 237 LGEKGCRYYTKDFKG-SHVPA-FKVKAVDTTGAGDSFVGALAVQLVR--GSLLPELSLEEALRFANACGAITVQRKGAIP 312 (330)
T ss_pred eCCCceEEEecCCCC-CCCCC-cccccccCCCchHHHHHHHHHHHhh--ccccchHHHHHHHHHHHHhhhHHhhccCCCc
Confidence 999999999998533 58888 8999999999999999999999999 8 55 99999999999999999999999
Q ss_pred CCCCccCcchhhh
Q psy14735 314 SFPDKETLPDNLF 326 (340)
Q Consensus 314 ~~~~~~~v~~~l~ 326 (340)
++|+++++++.+.
T Consensus 313 s~p~~~~~~~~~~ 325 (330)
T KOG2855|consen 313 SMPTEKEVQSLLK 325 (330)
T ss_pred cCccHHHHHHHhh
Confidence 9999999988775
No 12
>PLN02323 probable fructokinase
Probab=100.00 E-value=2.8e-44 Score=329.68 Aligned_cols=297 Identities=23% Similarity=0.325 Sum_probs=245.7
Q ss_pred CCCCcEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhc
Q psy14735 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (340)
Q Consensus 12 ~~~~~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~ 91 (340)
.+.++|+++|+.++|++..++..|. ........++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++ .
T Consensus 8 ~~~~~i~~iG~~~vD~~~~~~~~~~----~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~-~ 82 (330)
T PLN02323 8 AESSLVVCFGEMLIDFVPTVSGVSL----AEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILKK-N 82 (330)
T ss_pred CCCCcEEEechhhhhhccCCCCCCc----ccccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHHH-c
Confidence 4467899999999999987666543 2234567889999999999999999999999999999999999999999 9
Q ss_pred CCcccceEeeCCCCCceEEEEEcCCCCeEEEEeC--CcCCCCCHHHHHHHHhhccCCcEEEEeCCC-----CHHHHHHHH
Q psy14735 92 SINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP--GANTYLSASDIDAAKNLLLKAKVIMFQGET-----PWETTLYCL 164 (340)
Q Consensus 92 gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~-----~~~~~~~~~ 164 (340)
||+++++.+.++.+|+.+++.++++|+|++.++. +++..+++++++. +.+++++++++++.. +......++
T Consensus 83 GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (330)
T PLN02323 83 GVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDL--DLIRKAKIFHYGSISLITEPCRSAHLAAM 160 (330)
T ss_pred CCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCCh--HHHccCCEEEEechhccCchHHHHHHHHH
Confidence 9999999888888999999988889999887764 4555677776653 346788988876532 124456788
Q ss_pred HhchhcccCCceEEEeCCCC--CC-------CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEE
Q psy14735 165 SKLHVSLESRAKIIVNPSPA--VY-------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTV 235 (340)
Q Consensus 165 ~~a~~~~~~~~~v~~d~~~~--~~-------~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~v 235 (340)
+.+ ++.+.++++|+... .| +.+.++++++|++++|++|++.+++....+.+ +.. .++..|++.+
T Consensus 161 ~~a---~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~~---~~~-~~~~~g~~~v 233 (330)
T PLN02323 161 KIA---KEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDDD---TVV-KLWHPNLKLL 233 (330)
T ss_pred HHH---HHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccHH---HHH-HHHhcCCCEE
Confidence 888 88999999999743 22 12346788999999999999999986432222 222 4445799999
Q ss_pred EEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHHHhcc
Q psy14735 236 IITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLP-------LGEIILRSCHVARQSLFN 308 (340)
Q Consensus 236 vvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~-------~~~a~~~a~~~Aa~~~~~ 308 (340)
|||+|++|+++++++ ..+++|+ ++++++||+||||+|.|||++++++ |++ +++|+++|+++|+++|++
T Consensus 234 vvt~G~~G~~~~~~~--~~~~~~~-~~v~vvDttGAGDaf~Agfl~~l~~--g~~~~~~~~~l~~al~~a~a~Aa~~v~~ 308 (330)
T PLN02323 234 LVTEGEEGCRYYTKD--FKGRVEG-FKVKAVDTTGAGDAFVGGLLSQLAK--DLSLLEDEERLREALRFANACGAITTTE 308 (330)
T ss_pred EEecCCCceEEEeCC--CceEeCC-ccCCCCCCCCcHHHHHHHHHHHHHc--CCccccchHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999876 5678898 8889999999999999999999999 986 899999999999999999
Q ss_pred cCCCCCCCCccCcchhhhh
Q psy14735 309 VGLQNSFPDKETLPDNLFS 327 (340)
Q Consensus 309 ~g~~~~~~~~~~v~~~l~~ 327 (340)
.|+..++|+++++++++.+
T Consensus 309 ~g~~~~~~~~~~v~~~l~~ 327 (330)
T PLN02323 309 RGAIPALPTKEAVLKLLKK 327 (330)
T ss_pred cCCccCCCCHHHHHHHHHH
Confidence 9998889999999887753
No 13
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=8e-44 Score=330.32 Aligned_cols=299 Identities=17% Similarity=0.186 Sum_probs=245.5
Q ss_pred CCcEEEEcccccceeeecC-CCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcC
Q psy14735 14 EADIVVVGSCLVEFITYVQ-TLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNS 92 (340)
Q Consensus 14 ~~~I~viG~~~iD~~~~~~-~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~g 92 (340)
...|+++|+.++|+++.++ .+|.+++ ........+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ .|
T Consensus 57 ~~~v~viG~~~vD~~~~~~~~~p~~~~--~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~~l~~-~G 133 (362)
T PRK09954 57 QEYCVVVGAINMDIRGMADIRYPQAAS--HPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRR-AG 133 (362)
T ss_pred CccEEEEEEEEEEEEEeeCCcCcCCCC--CCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHHHHHH-cC
Confidence 3589999999999999887 7777665 344678889999999999999999999999999999999999999999 99
Q ss_pred CcccceEeeCCCCCceEEEEEcCCCCeEEEEeCC--cCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhc
Q psy14735 93 INTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPG--ANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVS 170 (340)
Q Consensus 93 i~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~ 170 (340)
|+++++...++.+|+.++++.++++++.+ .+.+ ....++++.++...+.+..++++++++..+.+....+++.+
T Consensus 134 Vd~~~~~~~~~~~T~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a--- 209 (362)
T PRK09954 134 VNVSGCIRLHGQSTSTYLAIANRQDETVL-AINDTHILQQLTPQLLNGSRDLIRHAGVVLADCNLTAEALEWVFTLA--- 209 (362)
T ss_pred CCccceEEcCCCCCeEEEEEEcCCCCEEE-EEcCchhhhcCCHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHhC---
Confidence 99999887777789988877776555444 3433 33567777777655567889999999888877777777666
Q ss_pred ccCCceEEEeCCCCCC-CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec
Q psy14735 171 LESRAKIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR 249 (340)
Q Consensus 171 ~~~~~~v~~d~~~~~~-~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 249 (340)
+ ++++++|+.+..+ ..+.++++++|++++|++|++.++|....+.++..++++.+.++|++.||||+|++|++++..
T Consensus 210 ~--~~~v~~D~~~~~~~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~ 287 (362)
T PRK09954 210 D--EIPVFVDTVSEFKAGKIKHWLAHIHTLKPTQPELEILWGQAITSDADRNAAVNALHQQGVQQIFVYLPDESVFCSEK 287 (362)
T ss_pred C--CCcEEEECCCHHHhhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCccEEEEeC
Confidence 4 6899999976421 235678999999999999999999976655566778888898999999999999999998875
Q ss_pred CCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhh
Q psy14735 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNL 325 (340)
Q Consensus 250 ~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l 325 (340)
++ ..+++|+ ++++++|||||||+|.|||++++++ |+++++|+++|+++|++++....+.....+.+.+++++
T Consensus 288 ~~-~~~~~~~-~~v~vvDttGAGDaF~Ag~l~~l~~--g~~~~eal~~a~a~Aal~~~s~~~~~~~~~~~~~~~~~ 359 (362)
T PRK09954 288 DG-EQFLLTA-PAHTTVDSFGADDGFMAGLVYSFLE--GYSFRDSARFAMACAAISRASGSLNNPTLSADNALSLV 359 (362)
T ss_pred CC-ceEeccC-CCcccccccchHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHh
Confidence 53 4667788 8889999999999999999999999 99999999999999999977544433234556666555
No 14
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=4.1e-45 Score=331.07 Aligned_cols=292 Identities=27% Similarity=0.401 Sum_probs=254.4
Q ss_pred CCcEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCC
Q psy14735 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (340)
Q Consensus 14 ~~~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi 93 (340)
|++|+++|+.++|++..++.+ .+...+......++||++.|+|++|++||.++.++|.+|+|.+|+.+++.|++ .||
T Consensus 1 m~~v~~iG~~~iD~~~~~~~~--~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~-~gv 77 (301)
T PF00294_consen 1 MKKVLVIGEVNIDIIGYVDRF--KGDLVRVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILEELKE-RGV 77 (301)
T ss_dssp EEEEEEESEEEEEEEEESSSH--TTSEEEESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHHHHHH-TTE
T ss_pred CCcEEEECccceEEEeecCCc--CCcceecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhhcccc-ccc
Confidence 578999999999999998887 45555888999999999999999999999999999999999999999999999 999
Q ss_pred cccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeC-----CCCHHHHHHHHHhch
Q psy14735 94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQG-----ETPWETTLYCLSKLH 168 (340)
Q Consensus 94 ~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~-----~~~~~~~~~~~~~a~ 168 (340)
+++++.+..+.+|+.+++.++++|+|++....++...++.+.+. ...+.+++++++++ ..+......+.+.+
T Consensus 78 ~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (301)
T PF00294_consen 78 DTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDELD--EEAIDEADILHLSGVSLPEGIPEDLLEALAKAA- 154 (301)
T ss_dssp EETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHHH--HHHHHTESEEEEESGHCSTTSHHHHHHHHHHHH-
T ss_pred cccccccccccccceeEeeecccccceeeecccccccccccccc--ccccccccceeecccccccccccceeeeccccc-
Confidence 99999988888999999999989999998888777777776662 34588999999999 55567777777777
Q ss_pred hcccCC--ceEEEeCCCC-CCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceE
Q psy14735 169 VSLESR--AKIIVNPSPA-VYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVV 245 (340)
Q Consensus 169 ~~~~~~--~~v~~d~~~~-~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~ 245 (340)
++.+ .+++.++... ..+.+.++++.+|++++|++|++.+++....+.++..+.++.++.++++.+++|+|++|++
T Consensus 155 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~ 232 (301)
T PF00294_consen 155 --KKNGPFDPVFRDPSWDDLREDLKELLPYADILKPNEEEAEALTGSKIDDPEDALAALRELQARGVKIVIVTLGEDGAL 232 (301)
T ss_dssp --HHTTEEEEEEEGGGSHHHHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHHHHHHHHHHHHTTSSEEEEEEGGGEEE
T ss_pred --ccccccccccccccccccchhhhhhccccchhccccccccccccccccchhhhhccccccchhhhhhhhccccccCcc
Confidence 7776 4555565542 1235567789999999999999999999877788888888888889999999999999999
Q ss_pred EEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCC
Q psy14735 246 YATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPD 317 (340)
Q Consensus 246 ~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~ 317 (340)
+++.+ +.+++|++++++++|+|||||+|+|||++++++ ++++++|+++|+++|++++++.|+...+|+
T Consensus 233 ~~~~~--~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~--~~~~~~a~~~a~~~aa~~v~~~g~~~~~p~ 300 (301)
T PF00294_consen 233 YYTND--ESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLS--GMSLEEALKFANAAAALKVQQPGPRSPLPT 300 (301)
T ss_dssp EEETT--EEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHTSSSSSGGTT-
T ss_pred ccccc--ccccccccccccccceeccchhhhHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCCCCcCCCCC
Confidence 99876 677777734679999999999999999999999 999999999999999999999999988886
No 15
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=6e-43 Score=315.23 Aligned_cols=279 Identities=19% Similarity=0.244 Sum_probs=236.7
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
+|+++|++++|++..++++|.++..++.+.....+|| +.|+|++|++||.++.++|.+|+|.+|+.+.+.|++ .||++
T Consensus 1 ~i~~iG~~~~D~i~~~~~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~-~gi~~ 78 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDKLPASGGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQAMRD-EGIEI 78 (289)
T ss_pred CeEEEcceeEEEEeecccCCCCCCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHHHHHH-cCCcc
Confidence 5899999999999999999999988888889999999 999999999999999999999999999999999999 99999
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCC------CHHHHHHHHHhchh
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGET------PWETTLYCLSKLHV 169 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~------~~~~~~~~~~~a~~ 169 (340)
+++.+. +..|+.++++++++|+|+++.+.+++..+++++++.. .+..++++++++.. +.+...++++.+
T Consensus 79 ~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 153 (289)
T cd01944 79 LLPPRG-GDDGGCLVALVEPDGERSFISISGAEQDWSTEWFATL--TVAPYDYVYLSGYTLASENASKVILLEWLEAL-- 153 (289)
T ss_pred cccccc-CCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhccc--cCCCCCEEEEeCccccCcchhHHHHHHHHHhc--
Confidence 988765 5678888888888999998888877777877776643 36789999998743 234455556555
Q ss_pred cccCCceEEEeCCCCCC----CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceE
Q psy14735 170 SLESRAKIIVNPSPAVY----PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVV 245 (340)
Q Consensus 170 ~~~~~~~v~~d~~~~~~----~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~ 245 (340)
+ .+.++++|+.+..+ +.+..+++++|++++|++|++.+++.... +....++.+.+.+++.++||+|++|++
T Consensus 154 -~-~~~~v~~D~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~---~~~~~~~~~~~~~~~~vvvt~G~~Ga~ 228 (289)
T cd01944 154 -P-AGTTLVFDPGPRISDIPDTILQALMAKRPIWSCNREEAAIFAERGDP---AAEASALRIYAKTAAPVVVRLGSNGAW 228 (289)
T ss_pred -c-CCCEEEEcCcccccccCHHHHHHHHhcCCEEccCHHHHHHHhCCCCc---chHHHHHHHHhccCCeEEEEECCCcEE
Confidence 4 46889999976542 23456789999999999999999986422 222446677778899999999999999
Q ss_pred EEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccC
Q psy14735 246 YATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVG 310 (340)
Q Consensus 246 ~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g 310 (340)
++..++ +.+++|+ ++++++||+||||+|.|||++++++ |+++++|+++|+++|+.+|++.|
T Consensus 229 ~~~~~~-~~~~~~~-~~~~vvDt~GAGDaf~ag~l~~~~~--g~~~~~a~~~a~a~aa~~~~~~G 289 (289)
T cd01944 229 IRLPDG-NTHIIPG-FKVKAVDTIGAGDTHAGGMLAGLAK--GMSLADAVLLANAAAAIVVTRSG 289 (289)
T ss_pred EEecCC-CeEEecC-CCCCCccCCCchHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhhhccCC
Confidence 998543 5778888 7889999999999999999999999 99999999999999999999876
No 16
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=4.5e-43 Score=318.27 Aligned_cols=289 Identities=21% Similarity=0.242 Sum_probs=246.6
Q ss_pred EcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcccceE
Q psy14735 20 VGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIW 99 (340)
Q Consensus 20 iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v~ 99 (340)
.=++.+|+++.++.+| +++.++.+....++||++.|+|.+|++||.++.++|.+|+| .|+.+++.|++ .||+++++.
T Consensus 5 ~~~~~~D~~~~~~~~~-~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~~-~gId~~~~~ 81 (304)
T TIGR03828 5 TLNPAIDLTIELDGLT-LGEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLRE-EGIKTDFVR 81 (304)
T ss_pred EcchHHeEEEEccccc-cCceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHHH-CCCcceEEE
Confidence 3489999999999999 89999998999999999999999999999999999999999 69999999999 999999887
Q ss_pred eeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHH----hhccCCcEEEEeCCC----CHHHHHHHHHhchhcc
Q psy14735 100 LLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK----NLLLKAKVIMFQGET----PWETTLYCLSKLHVSL 171 (340)
Q Consensus 100 ~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~v~i~~~~----~~~~~~~~~~~a~~~~ 171 (340)
.. ..|+.++++++++|+++.+...+ ..+++++++.+. +.+++++++++++.. +.+....+++.+ +
T Consensus 82 ~~--~~t~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~~---~ 154 (304)
T TIGR03828 82 VP--GETRINVKIKEPSGTETKLNGPG--PEISEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPDFYAELIALA---R 154 (304)
T ss_pred CC--CCCeeeEEEEeCCCCEEEEECCC--CCCCHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCHHHHHHHHHHH---H
Confidence 65 35777788888888887665444 346666555432 357899999998753 457788899999 8
Q ss_pred cCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCC
Q psy14735 172 ESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDN 251 (340)
Q Consensus 172 ~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 251 (340)
+.+.++++|+.... ....+....|++++|+.|++.+++....+.+++.++++.++++|++.+|||+|++|+++++++
T Consensus 155 ~~~~~v~~D~~~~~--~~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~- 231 (304)
T TIGR03828 155 EKGAKVILDTSGEA--LRDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARELLDLGAENVLISLGADGALLVTKE- 231 (304)
T ss_pred HcCCEEEEECChHH--HHHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCcEEEcCC-
Confidence 89999999987531 112233457899999999999999876667788888898998999999999999999999876
Q ss_pred CceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhhhh
Q psy14735 252 PRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNLFS 327 (340)
Q Consensus 252 ~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l~~ 327 (340)
+.+++|+ ++++++|++||||+|.|+|++++++ |+++++|+++|+++|+++|++.|+. +|+++++++++..
T Consensus 232 -~~~~~~~-~~~~vvDttGAGDaF~a~~l~~l~~--g~~~~~a~~~a~~~Aa~~~~~~G~~--~p~~~~~~~~~~~ 301 (304)
T TIGR03828 232 -GALFAQP-PKGEVVSTVGAGDSMVAGFLAGLES--GLSLEEALRLAVAAGSAAAFSEGTG--LPDPEDIEELLPQ 301 (304)
T ss_pred -ceEEEeC-CCccccCCcChHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCcCCC--CCCHHHHHHHHhc
Confidence 5678888 8889999999999999999999999 9999999999999999999999974 7999999888764
No 17
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=2.1e-42 Score=315.44 Aligned_cols=298 Identities=22% Similarity=0.250 Sum_probs=238.7
Q ss_pred CCCCCcEEEEcccccceeee--cCCC-C-CCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHH
Q psy14735 11 LKDEADIVVVGSCLVEFITY--VQTL-P-KPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEE 86 (340)
Q Consensus 11 ~~~~~~I~viG~~~iD~~~~--~~~~-~-~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~ 86 (340)
.|++++|+++|+.++|+++. ++.+ | .++..........++|| ++|+|.+|++||.++.++|.+|+|.+|+.+++.
T Consensus 4 ~~~~~~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~ 82 (315)
T TIGR02198 4 SFKGAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEREEDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRLEAL 82 (315)
T ss_pred hhCCCcEEEECceeEeeeeeecccccCCCCCCceEEEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHHHHH
Confidence 46689999999999999986 4443 2 22333344566778999 789999999999999999999999999999999
Q ss_pred HhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHH----HHHHHHhhccCCcEEEEeCC----CCHH
Q psy14735 87 LRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS----DIDAAKNLLLKAKVIMFQGE----TPWE 158 (340)
Q Consensus 87 l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~v~i~~~----~~~~ 158 (340)
|++ .||+++++...++.+|+.+++++++++. ...........++.. .++.+.+.+++++++++++. .+.+
T Consensus 83 l~~-~gI~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~ 160 (315)
T TIGR02198 83 LAE-EGIDTSGLIRDKDRPTTTKTRVLARNQQ-LLRVDFEERDPINAELEARLLAAIREQLASADAVVLSDYAKGVLTPR 160 (315)
T ss_pred HHH-CCCCcceEEECCCCCcceEEEEEcCCeE-EEEecCCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCCCCccCHH
Confidence 999 9999998877777789999888875332 222111212234432 23333445889999999753 4578
Q ss_pred HHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHh-cCCCEEEE
Q psy14735 159 TTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD-MKCNTVII 237 (340)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~-~g~~~vvv 237 (340)
....+++.+ +++++++++|+.+.. ...++.+|++++|++|++.+++ ...+.++..++++.+.+ +|++.++|
T Consensus 161 ~~~~~~~~a---~~~g~~v~~D~~~~~----~~~~~~~d~l~~n~~E~~~l~~-~~~~~~~~~~~~~~l~~~~g~~~viv 232 (315)
T TIGR02198 161 VVQEVIAAA---RKHGKPVLVDPKGKD----FSRYRGATLITPNRKEAEAAVG-ACDTEAELVQAAEKLLEELDLEALLV 232 (315)
T ss_pred HHHHHHHHH---HhcCCCEEEeCCCcc----hhhcCCCcEECCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 888999999 999999999998653 2457789999999999999998 33445667777777764 68999999
Q ss_pred EecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCC
Q psy14735 238 TLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPD 317 (340)
Q Consensus 238 t~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~ 317 (340)
|+|++|++++++++ ..+++|+ ++++++||+||||+|.|||++++++ |+++++|+++|+++|+++|++.|+.. ++
T Consensus 233 T~G~~G~~~~~~~~-~~~~~~~-~~~~vvdt~GAGDaf~ag~~~~l~~--g~~~~~al~~A~~~aa~~~~~~G~~~--~~ 306 (315)
T TIGR02198 233 TRSEKGMTLFTREG-EPIHIPA-QAREVYDVTGAGDTVIATLALALAA--GASLEEACRLANAAAGVVVGKLGTAT--VS 306 (315)
T ss_pred EcCCCCeEEEecCC-CeEEecC-CCCCCCCCcCccHHHHHHHHHHHHc--CCCHHHHHHHHHHHhhhhhccCCCCC--CC
Confidence 99999999988543 5788898 7889999999999999999999999 99999999999999999999999864 67
Q ss_pred ccCcchhh
Q psy14735 318 KETLPDNL 325 (340)
Q Consensus 318 ~~~v~~~l 325 (340)
+++++..|
T Consensus 307 ~~~~~~~~ 314 (315)
T TIGR02198 307 PAELANAL 314 (315)
T ss_pred HHHHHHHh
Confidence 77776554
No 18
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-43 Score=317.77 Aligned_cols=299 Identities=32% Similarity=0.435 Sum_probs=256.7
Q ss_pred cEEEEcccccceeee-cCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCc
Q psy14735 16 DIVVVGSCLVEFITY-VQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSIN 94 (340)
Q Consensus 16 ~I~viG~~~iD~~~~-~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~ 94 (340)
+|+++|+.++|++.. .+.+|.+++..........+||++.|+|+++++||.++.++|.+|+|.+|+.+++.|++ .||+
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~~l~~-~GVd 79 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPEPGETVLGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLEELRK-EGVD 79 (311)
T ss_pred CEEEECchhhheehhhccCCCCCcccccccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHHHHHH-cCCc
Confidence 589999999999996 77788888777776778899999999999999999999999999999999999999999 9999
Q ss_pred ccceEeeCCCCCceEEEEEcCCCCeEEEEeCC-cCCCCCHHHHHHHHhhccCCcEEEEeCC---CCHHHHHHHHHhchhc
Q psy14735 95 TKYIWLLQDVTTGVCSKVISNKGTHQTNIIPG-ANTYLSASDIDAAKNLLLKAKVIMFQGE---TPWETTLYCLSKLHVS 170 (340)
Q Consensus 95 ~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~v~i~~~---~~~~~~~~~~~~a~~~ 170 (340)
++++......+|+.+++.++++|+|.+.++.+ +...+++++++. ..+..++++++++. .+++....+++.+
T Consensus 80 ~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a--- 154 (311)
T COG0524 80 TSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDE--DELAGADVLHISGIQLEIPPEALLAALELA--- 154 (311)
T ss_pred cceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcCh--HHHhhcCeeeEEEeecCCChHHHHHHHHHH---
Confidence 99998877779999999999999999999887 467788888774 24677888888653 3448899999999
Q ss_pred ccCCceEEEeCCC--CCC--CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEE
Q psy14735 171 LESRAKIIVNPSP--AVY--PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVY 246 (340)
Q Consensus 171 ~~~~~~v~~d~~~--~~~--~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~ 246 (340)
++++.++.+|+.+ ..| +.+..+++.+|++++|++|++.+++.. ++..+....++..+++.++||+|++|+++
T Consensus 155 ~~~g~~v~~d~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~----~~~~~~~~~~~~~~~~~vvvt~G~~Ga~~ 230 (311)
T COG0524 155 KAAGVTVSFDLNPRPALWDRELLEELLALADILFPNEEEAELLTGLE----EDAEAAAALLLAKGVKTVVVTLGAEGAVV 230 (311)
T ss_pred HHcCCeEEEecCCCccccchhhHHHHHhhCCEEeCCHHHHHHHhCCC----ccHHHHHHHHhhcCCCEEEEEeCCCcEEE
Confidence 9999998877654 343 567789999999999999999999851 34444446677789999999999999999
Q ss_pred EecCCC-ceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhh
Q psy14735 247 ATRDNP-RLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNL 325 (340)
Q Consensus 247 ~~~~~~-~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l 325 (340)
++.++. .....|+ ++++++|||||||+|.|||++++++ |+++++|+++|+++|+++++..|+...+|+.+++++++
T Consensus 231 ~~~~~~~~~~~~~~-~~~~vvDttGAGDaF~agfl~~~~~--g~~~~~a~~~a~a~aa~~~~~~g~~~~~p~~~~~~~~~ 307 (311)
T COG0524 231 FTGGGEVTVPVPAA-FKVKVVDTTGAGDAFAAGFLAGLLE--GKSLEEALRFANAAAALAVTRPGARPSLPTREEVEAFL 307 (311)
T ss_pred EeCCCceeeccCCC-CccccccCCCchHHHHHHHHHHHHc--CCCHHHHHHHHHHHhhhhhccCCCCCCCCCHHHHHHHH
Confidence 998641 1222335 6789999999999999999999999 99999999999999999999999999999999999988
Q ss_pred hh
Q psy14735 326 FS 327 (340)
Q Consensus 326 ~~ 327 (340)
..
T Consensus 308 ~~ 309 (311)
T COG0524 308 EE 309 (311)
T ss_pred hc
Confidence 64
No 19
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=7.9e-43 Score=325.25 Aligned_cols=293 Identities=19% Similarity=0.221 Sum_probs=238.0
Q ss_pred cCCCCCcEEEEcccccceeeecCC-------CCCCCCeeecC-------------c--eeeecCChHHHHHHHHHhcC-C
Q psy14735 10 NLKDEADIVVVGSCLVEFITYVQT-------LPKPEETVKGY-------------H--FEQRFSGKGANQCVAAAKLR-A 66 (340)
Q Consensus 10 ~~~~~~~I~viG~~~iD~~~~~~~-------~~~~~~~~~~~-------------~--~~~~~GG~~~n~a~~l~~lG-~ 66 (340)
|+.+.-+|+.+||+++|+...+++ +++.+.++-.. . ....+||++.|+|++|++|| .
T Consensus 29 ~~~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLGG~ 108 (434)
T PRK15074 29 NETSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLADD 108 (434)
T ss_pred cCCCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcCCC
Confidence 456667999999999999999762 33333322111 1 35569999999999999996 9
Q ss_pred ceeEEEEecCC-hhhHHHHHHHh--hhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhc
Q psy14735 67 SVALISKLGND-KFGKSYLEELR--KYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLL 143 (340)
Q Consensus 67 ~v~~~~~vG~D-~~g~~i~~~l~--~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 143 (340)
++.|+|.||+| .+|+.+.+.|+ + .||+++++... +.+|+.|+++++++|+|++..+.+++..+++++++. +.+
T Consensus 109 ~~~fig~VGdDd~~G~~~~~~L~~~~-~GVdt~~v~~~-~~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~--~~i 184 (434)
T PRK15074 109 RSVLLGVMSSNIEIGSYAYRYLCNTS-SRTDLNYLQGV-DGPIGRCFTLISEDGERTFAISPGHMNQLRPESIPE--DVI 184 (434)
T ss_pred CeEEEEEeCCCHHHHHHHHHHhhhhh-CCccCcceEEc-CCCCEEEEEEECCCCCEEEEEecChhhcCChhHCCH--hHh
Confidence 99999999999 69999999996 7 89999998655 458999999999999999999999888999988874 358
Q ss_pred cCCcEEEEeCCC--------CHHHHHHHHHhchhcccCCceEEEeCCCCC--CC---C-chhhhhcCcEEEeCHHHHHHh
Q psy14735 144 LKAKVIMFQGET--------PWETTLYCLSKLHVSLESRAKIIVNPSPAV--YP---L-NPIVMILADIICINEQEAEII 209 (340)
Q Consensus 144 ~~~~~v~i~~~~--------~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~--~~---~-~~~~l~~~dil~~n~~E~~~l 209 (340)
++++++|+++.. ..+...++++.+ +++|++|++|++... +. . ...+++++|++++|++|++.+
T Consensus 185 ~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~A---ke~G~~VslD~s~~~~v~~~~~~~~e~l~~~vDILf~NeeEa~~L 261 (434)
T PRK15074 185 AGASALVLTAYLVRCKPGEPMPEATMKAIEYA---KKHNVPVVLTLGTKFVIEDNPQWWQEFLKEHVSILAMNEDEAEAL 261 (434)
T ss_pred ccCCEEEEeeeehhcccCCCcHHHHHHHHHHH---HHcCCEEEEECcchhhccccHHHHHHHHHhcCCEEEcCHHHHHHH
Confidence 899999998743 257788999999 999999999998652 11 1 123456899999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCC-----ce------------------------------
Q psy14735 210 TDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP-----RL------------------------------ 254 (340)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~-----~~------------------------------ 254 (340)
++. ++..++++.+.+ +++.|+||+|++|++++...+. ..
T Consensus 262 tG~-----~d~eea~~~L~~-~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (434)
T PRK15074 262 TGE-----SDPLLASDKALD-WVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNPLR 335 (434)
T ss_pred hCC-----CCHHHHHHHHHc-CCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccchhccccccccc
Confidence 986 456677777775 5799999999999999752210 11
Q ss_pred --EEEccCC---CcCcccCCCcchHHHHHHHHHHHcCCCC--------------------CHHHHHHHHHHHHHHHhccc
Q psy14735 255 --KTITVDH---VEYPIESEGVGDCFVGALAYYLCYFPQL--------------------PLGEIILRSCHVARQSLFNV 309 (340)
Q Consensus 255 --~~~p~~~---~~~vvdttGaGDaF~ag~~~~l~~~~g~--------------------~~~~a~~~a~~~Aa~~~~~~ 309 (340)
.++|+ + +++++|||||||+|+|||+|+|++ |+ ++.+|+++|+++|+.++++.
T Consensus 336 ~~~~~~~-~~~~~~~~vDttGAGD~f~~gfl~~l~~--g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~ 412 (434)
T PRK15074 336 VYSHIAP-YMGGPEKIMNTNGAGDGALSALLHDITA--NSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQH 412 (434)
T ss_pred cccccCc-ccCCCCcceeCCCcHHHHHHHHHHHHHC--CCcccccccccccccccccccCCHHHHHHHHHHHHHHHHhhc
Confidence 27788 6 788999999999999999999999 97 89999999999999999999
Q ss_pred CCC--CCCCCc
Q psy14735 310 GLQ--NSFPDK 318 (340)
Q Consensus 310 g~~--~~~~~~ 318 (340)
|++ .++|+.
T Consensus 413 G~~~~~~~p~~ 423 (434)
T PRK15074 413 SPRLSRGLPER 423 (434)
T ss_pred CCCCCCCCCCc
Confidence 984 345554
No 20
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1e-42 Score=312.17 Aligned_cols=270 Identities=24% Similarity=0.330 Sum_probs=231.8
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
+|+++|++++|+++.++++|.+++..+......++||+++|+|.+|++||.++.++|.+|+|.+|+.+++.|++ .||++
T Consensus 1 ~v~~iG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~-~gi~~ 79 (279)
T cd01942 1 DVAVVGHLNYDIILKVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELRE-EGVDT 79 (279)
T ss_pred CEEEEecceeeeEeecccCCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHH-cCCCc
Confidence 58999999999999999999988888888999999999999999999999999999999999999999999999 99999
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCCc
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRA 175 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~ 175 (340)
+++...++.+|+.+++.++++|++++...+++...+++++ . ...++.++++++++.. ...++++.+ ++.+.
T Consensus 80 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~g~ 150 (279)
T cd01942 80 SHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND-E--ADPDGLADIVHLSSGP---GLIELAREL---AAGGI 150 (279)
T ss_pred cceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCC-c--hhhhcccCEEEeCCch---HHHHHHHHH---HHcCC
Confidence 9997776788999999999888888776666665665544 1 2347889999998763 466777777 77899
Q ss_pred eEEEeCCCCCC----CCchhhhhcCcEEEeCHHHH---HHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEe
Q psy14735 176 KIIVNPSPAVY----PLNPIVMILADIICINEQEA---EIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYAT 248 (340)
Q Consensus 176 ~v~~d~~~~~~----~~~~~~l~~~dil~~n~~E~---~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~ 248 (340)
++++|+.+... +.+..+++++|++++|++|+ +.+++.. +.. ..++++.+++|+|++|+++++
T Consensus 151 ~v~~D~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~-----~~~------~~~~~~~vvvt~G~~G~~~~~ 219 (279)
T cd01942 151 TVSFDPGQELPRLSGEELEEILERADILFVNDYEAELLKERTGLS-----EAE------LASGVRVVVVTLGPKGAIVFE 219 (279)
T ss_pred eEEEcchhhhhhccHHHHHHHHhhCCEEecCHHHHHHHHhhcCCC-----hHH------HhcCCCEEEEEECCCceEEEE
Confidence 99999976432 22467889999999999999 4555542 111 126899999999999999998
Q ss_pred cCCCceEEEccCC-CcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCC
Q psy14735 249 RDNPRLKTITVDH-VEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGL 311 (340)
Q Consensus 249 ~~~~~~~~~p~~~-~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~ 311 (340)
++ +.+++|+ + +++++||+||||+|.|||++++++ |+++++|+++|+++|++++++.|+
T Consensus 220 ~~--~~~~~~~-~~~~~vvDttGAGDaf~a~~i~~l~~--g~~l~~al~~a~~~Aa~~~~~~G~ 278 (279)
T cd01942 220 DG--EEVEVPA-VPAVKVVDTTGAGDAFRAGFLYGLLR--GYDLEESLRLGNLAASLKVERRGA 278 (279)
T ss_pred CC--ceEEccC-cCcCCCcCCCCchHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcccCC
Confidence 76 6888888 6 789999999999999999999999 999999999999999999999985
No 21
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=1.1e-42 Score=315.75 Aligned_cols=280 Identities=21% Similarity=0.365 Sum_probs=235.1
Q ss_pred CCcEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCC
Q psy14735 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (340)
Q Consensus 14 ~~~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi 93 (340)
|++|+++|+.++|++. .++ ......+||+++|+|++|++||.++.++|.+|+|.+|+.+.+.|++ .||
T Consensus 2 ~~~il~iG~~~iD~~~------~~~-----~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~~l~~-~gI 69 (304)
T PRK09434 2 MNKVWVLGDAVVDLIP------EGE-----NRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQTLQD-EGV 69 (304)
T ss_pred CCcEEEecchheeeec------CCC-----CceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHHHHHH-cCC
Confidence 4699999999999972 222 2455689999999999999999999999999999999999999999 999
Q ss_pred cccceEeeCCCCCceEEEEEcCCCCeEEEEeC--CcCCCCCHHHHHHHHhhccCCcEEEEeCCC-----CHHHHHHHHHh
Q psy14735 94 NTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP--GANTYLSASDIDAAKNLLLKAKVIMFQGET-----PWETTLYCLSK 166 (340)
Q Consensus 94 ~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~-----~~~~~~~~~~~ 166 (340)
+++++...++.+|+.+++.++++|+|++.+.. +++..++.++++. +++++++++++.. ..+...++++.
T Consensus 70 ~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (304)
T PRK09434 70 DTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLPP----FRQGEWLHLCSIALSAEPSRSTTFEAMRR 145 (304)
T ss_pred CCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhhh----hcCCCEEEEccccccCchHHHHHHHHHHH
Confidence 99999888888999999998888988865443 3344556666553 5678999997532 13456778888
Q ss_pred chhcccCCceEEEeCCCC--CC-------CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHh-cCCCEEE
Q psy14735 167 LHVSLESRAKIIVNPSPA--VY-------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD-MKCNTVI 236 (340)
Q Consensus 167 a~~~~~~~~~v~~d~~~~--~~-------~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~-~g~~~vv 236 (340)
+ ++.+.++++|+... .| +.+.++++++|++++|++|+..+++. ++..++++.+.+ .+++.++
T Consensus 146 ~---~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~-----~~~~~~~~~l~~~~g~~~vv 217 (304)
T PRK09434 146 I---KAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGT-----SQLEDAIYALADRYPIALLL 217 (304)
T ss_pred H---HHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCC-----CCHHHHHHHHHhhcCCcEEE
Confidence 8 88999999998743 23 12345688999999999999999886 466778888876 6899999
Q ss_pred EEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHHhcccC
Q psy14735 237 ITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQL------PLGEIILRSCHVARQSLFNVG 310 (340)
Q Consensus 237 vt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~------~~~~a~~~a~~~Aa~~~~~~g 310 (340)
||+|++|+++++++ +.+++|+ ++++++|||||||+|.|||++++++ |+ ++++|+++|+++|++++++.|
T Consensus 218 vt~G~~G~~~~~~~--~~~~~~~-~~~~~vDttGAGD~f~ag~~~~l~~--g~~~~~~~~~~~a~~~a~~~Aa~~v~~~g 292 (304)
T PRK09434 218 VTLGAEGVLVHTRG--QVQHFPA-PSVDPVDTTGAGDAFVAGLLAGLSQ--AGLWTDEAELAEIIAQAQACGALATTAKG 292 (304)
T ss_pred EEecCCceEEEeCC--ceeEeCC-CCCCCCcCCCchHHHHHHHHHHHHc--CCCccchHHHHHHHHHHHHHHHHHHcccC
Confidence 99999999999876 6788999 8889999999999999999999999 96 899999999999999999999
Q ss_pred CCCCCCCccCcc
Q psy14735 311 LQNSFPDKETLP 322 (340)
Q Consensus 311 ~~~~~~~~~~v~ 322 (340)
+..++|++++++
T Consensus 293 ~~~~~~~~~~~~ 304 (304)
T PRK09434 293 AMTALPNRQELE 304 (304)
T ss_pred CcCCCCChHHcC
Confidence 988888877653
No 22
>PLN02967 kinase
Probab=100.00 E-value=1e-42 Score=331.08 Aligned_cols=303 Identities=21% Similarity=0.266 Sum_probs=240.6
Q ss_pred CCcEEEEcccccceeeecCCC--CCCC--------CeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHH
Q psy14735 14 EADIVVVGSCLVEFITYVQTL--PKPE--------ETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSY 83 (340)
Q Consensus 14 ~~~I~viG~~~iD~~~~~~~~--~~~~--------~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i 83 (340)
.+.|++||.+++|++...... ...+ ...........+||++.|+|.+|++||.++.|+|.||+|.+|+.+
T Consensus 196 ~~~V~~iGe~l~D~~p~g~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~l 275 (581)
T PLN02967 196 PPLVCCFGAAQHAFVPSGRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAM 275 (581)
T ss_pred CCeEEEECchhheecccCccchhhhhccccccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 357999999999997531100 0000 012234677889999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEE-eCCcCCCCCHHHHHHHHhhccCCcEEEEeCCC-----CH
Q psy14735 84 LEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNI-IPGANTYLSASDIDAAKNLLLKAKVIMFQGET-----PW 157 (340)
Q Consensus 84 ~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~-----~~ 157 (340)
++.|++ .||+++++.+..+.+|+.+++.++++|++++.+ .++++..+++++++. ..++.++++|+++.. +.
T Consensus 276 l~~L~~-~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~--~~l~~A~i~hfgg~~ll~e~~~ 352 (581)
T PLN02967 276 LYYLNV-NKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINI--DVLKEAKMFYFNTHSLLDPTMR 352 (581)
T ss_pred HHHHHH-cCCcccceEecCCCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCH--hHhcCCCEEEEeCchhcccchH
Confidence 999999 999999998887889999999999999987753 457777788777654 347889999998742 34
Q ss_pred HHHHHHHHhchhcccCCceEEEeCC--CCCCC-------CchhhhhcCcEEEeCHHHHHHhhcCCCCCh-----h-----
Q psy14735 158 ETTLYCLSKLHVSLESRAKIIVNPS--PAVYP-------LNPIVMILADIICINEQEAEIITDMKINNE-----E----- 218 (340)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~v~~d~~--~~~~~-------~~~~~l~~~dil~~n~~E~~~l~~~~~~~~-----~----- 218 (340)
+...++++.+ ++.|++|+||+. +.+|. .+.++++++||+++|++|++.|+|...... +
T Consensus 353 ~all~alk~A---k~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~ 429 (581)
T PLN02967 353 STTLRAIKIS---KKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKF 429 (581)
T ss_pred HHHHHHHHHH---HHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhcc
Confidence 6788889999 999999999975 34452 356788999999999999999998531100 0
Q ss_pred --hHHHHHHHHHhcCCCEEEEEecCCceEEEecCCC-ceEEEccCCCcC--cccCCCcchHHHHHHHHHHHcCCC-----
Q psy14735 219 --DLADCMEKLLDMKCNTVIITLGGSGVVYATRDNP-RLKTITVDHVEY--PIESEGVGDCFVGALAYYLCYFPQ----- 288 (340)
Q Consensus 219 --~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~-~~~~~p~~~~~~--vvdttGaGDaF~ag~~~~l~~~~g----- 288 (340)
...+.+..+...+++.|+||+|++|+++++.+.. ....+|+ ++++ +||||||||+|.|||+++|++ +
T Consensus 430 ~~~~~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a-~~V~V~vVDTTGAGDAF~AGfL~~Ll~--g~~~~~ 506 (581)
T PLN02967 430 VHYSPEVVAPLWHENLKVLFVTNGTSKIHYYTKEHNGAVHGMED-APITPFTSDMSASGDGIVAGLMRMLTV--QPHLIT 506 (581)
T ss_pred ccchHHHHHHHHhCCCCEEEEEECccceEEEECCCceeEeeccC-CCCCCCCCCCCchhHHHHHHHHHHHHh--ccCccc
Confidence 0123455666679999999999999999986521 2334555 5555 599999999999999999997 5
Q ss_pred --CCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhh
Q psy14735 289 --LPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNL 325 (340)
Q Consensus 289 --~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l 325 (340)
.++++|+++|+++||++++..|+++++|+.+++++..
T Consensus 507 g~~~LeeaLrfAnAaAAL~vt~~GA~~glPt~~eV~~~~ 545 (581)
T PLN02967 507 DKGYLEKTIKYAIDCGVIDQWLLARTRGFPPKEDMEDEV 545 (581)
T ss_pred ccccHHHHHHHHHHHHHHHhccCCCccCCCCHHHHhhhc
Confidence 5799999999999999999999999999999887654
No 23
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=2.1e-42 Score=312.42 Aligned_cols=277 Identities=22% Similarity=0.269 Sum_probs=233.0
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
+|+++|+.++|++...+ ++..........+||++.|+|++|++||.++.++|.+|+|.+|+.+.+.|++ .||++
T Consensus 1 ~i~~iG~~~iD~~~~~~-----~~~~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~~l~~-~gi~~ 74 (294)
T cd01166 1 DVVTIGEVMVDLSPPGG-----GRLEQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRR-EGVDT 74 (294)
T ss_pred CeEEechhheeeecCCC-----CccchhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH-cCCCC
Confidence 68999999999986432 3445556778889999999999999999999999999999999999999999 99999
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEeCC--cCCCCCHHHHHHHHhhccCCcEEEEeCCCC------HHHHHHHHHhc
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPG--ANTYLSASDIDAAKNLLLKAKVIMFQGETP------WETTLYCLSKL 167 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~------~~~~~~~~~~a 167 (340)
+++.+..+.+|+.+++.++++|+|++..+.+ +...++.++++. ..+++++++++++..+ .+...++++.+
T Consensus 75 ~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 152 (294)
T cd01166 75 SHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDE--AALAGADHLHLSGITLALSESAREALLEALEAA 152 (294)
T ss_pred ceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCH--HHHhCCCEEEEcCcchhhCHHHHHHHHHHHHHH
Confidence 9998888889999999988888888776643 344566655542 3478999999998654 26778888888
Q ss_pred hhcccCCceEEEeCCCCC--C------CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEe
Q psy14735 168 HVSLESRAKIIVNPSPAV--Y------PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITL 239 (340)
Q Consensus 168 ~~~~~~~~~v~~d~~~~~--~------~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~ 239 (340)
++.+.++++|+.... | +.+..+++++|++++|+.|++.+++.+. .++..+.++.+ ++|++.++||+
T Consensus 153 ---~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~--~~~~~~~~~~l-~~g~~~viit~ 226 (294)
T cd01166 153 ---KARGVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALLGDED--PTDAAERALAL-ALGVKAVVVKL 226 (294)
T ss_pred ---HHcCCEEEECCCCcchhcChHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCC--chhHHHHHHhh-cCCccEEEEEE
Confidence 888999999997532 1 2234678899999999999999988642 23555555666 68999999999
Q ss_pred cCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCC
Q psy14735 240 GGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGL 311 (340)
Q Consensus 240 G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~ 311 (340)
|++|+++++++ +.+++|+ ++++++||+||||+|.|+|++++++ |+++++|+++|+++|+.+|++.|+
T Consensus 227 G~~G~~~~~~~--~~~~~~~-~~~~~vdt~GAGD~f~a~~~~~l~~--g~~~~~a~~~a~~~aa~~i~~~G~ 293 (294)
T cd01166 227 GAEGALVYTGG--GRVFVPA-YPVEVVDTTGAGDAFAAGFLAGLLE--GWDLEEALRFANAAAALVVTRPGD 293 (294)
T ss_pred cCCceEEEECC--ceEEeCC-CCcccccCCCchHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999876 6788999 7889999999999999999999999 999999999999999999999985
No 24
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=6.3e-42 Score=311.28 Aligned_cols=294 Identities=16% Similarity=0.204 Sum_probs=246.9
Q ss_pred cEEEE-cccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCc
Q psy14735 16 DIVVV-GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSIN 94 (340)
Q Consensus 16 ~I~vi-G~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~ 94 (340)
+|+++ =+|.+|.++.+++++ +++.++.+....++||+++|+|++|++||.++.+++.+|+ .+|+.+.+.|++ .||+
T Consensus 3 ~i~~~~~~p~~d~~~~~~~~~-~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l~~-~gv~ 79 (309)
T PRK10294 3 RIYTLTLAPSLDSATITPQIY-PEGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLLAD-ENVP 79 (309)
T ss_pred eEEEEecChHHeEEEEeCcee-eCCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHHHH-cCCC
Confidence 37776 699999999999995 7888999999999999999999999999999999999997 789999999999 9999
Q ss_pred ccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHH---hhccCCcEEEEeCCCC----HHHHHHHHHhc
Q psy14735 95 TKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK---NLLLKAKVIMFQGETP----WETTLYCLSKL 167 (340)
Q Consensus 95 ~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~v~i~~~~~----~~~~~~~~~~a 167 (340)
++++...+. .++..++..+++|+++++..+++ .++.++++.+. ..+++++++++++..+ .+...++++.+
T Consensus 80 ~~~~~~~~~-~~~~~~i~~~~~g~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~a 156 (309)
T PRK10294 80 VATVEAKDW-TRQNLHVHVEASGEQYRFVMPGA--ALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAA 156 (309)
T ss_pred ceEEECCCC-CeeeEEEEEcCCCcEEEEECCCC--CCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 999876543 34444566777888776655443 46666665432 2367899999988765 47788999999
Q ss_pred hhcccCCceEEEeCCCCCCCCchhh--hhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcC-CCEEEEEecCCce
Q psy14735 168 HVSLESRAKIIVNPSPAVYPLNPIV--MILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMK-CNTVIITLGGSGV 244 (340)
Q Consensus 168 ~~~~~~~~~v~~d~~~~~~~~~~~~--l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g-~~~vvvt~G~~G~ 244 (340)
++.|.++++|+.+.. .... ++.+|++++|++|++.|++.+..+.+++.++++.+++.+ ++.++||+|++|+
T Consensus 157 ---~~~g~~v~~D~~~~~---~~~~~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~~~~~~~~vvvT~G~~G~ 230 (309)
T PRK10294 157 ---QKQGIRCIIDSSGDA---LSAALAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELVNSGKAKRVVVSLGPQGA 230 (309)
T ss_pred ---HHcCCeEEEeCCCHH---HHHHHhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEEEEecCCCce
Confidence 899999999997542 1222 457999999999999999987666677888899998876 8999999999999
Q ss_pred EEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchh
Q psy14735 245 VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDN 324 (340)
Q Consensus 245 ~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~ 324 (340)
++++++ +.+++|+ ++++++||+||||+|.|||++++++ |+++++|+++|+++|+++|++.|+. .+++++++++
T Consensus 231 ~~~~~~--~~~~~~~-~~v~vvDttGAGDaf~ag~l~~l~~--g~~~~~al~~a~a~aa~~v~~~G~~--~~~~~~~~~~ 303 (309)
T PRK10294 231 LGVDSE--NCIQVVP-PPVKSQSTVGAGDSMVGAMTLKLAE--NASLEEMVRFGVAAGSAATLNQGTR--LCSHDDTQKI 303 (309)
T ss_pred EEEcCC--ccEEEeC-CCcccCCCcchHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCCCC--CCCHHHHHHH
Confidence 998876 5678888 7889999999999999999999999 9999999999999999999999986 3678888888
Q ss_pred hhhc
Q psy14735 325 LFSL 328 (340)
Q Consensus 325 l~~~ 328 (340)
+...
T Consensus 304 ~~~~ 307 (309)
T PRK10294 304 YAYL 307 (309)
T ss_pred HHHh
Confidence 7653
No 25
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=1e-41 Score=309.36 Aligned_cols=285 Identities=24% Similarity=0.286 Sum_probs=232.2
Q ss_pred cEEEEcccccceeeec--CCCCCCC--CeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhc
Q psy14735 16 DIVVVGSCLVEFITYV--QTLPKPE--ETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~--~~~~~~~--~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~ 91 (340)
+|+++|+.++|+++.+ +.+|.+. ..........++|| +.|+|.+|++||.++.++|.+|+|.+|+.+++.|++ .
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~-~ 78 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISPEAPVPVVKVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEK-E 78 (304)
T ss_pred CEEEEcceeEEeeEeeccccccCCCCcceEEeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHh-C
Confidence 6899999999999874 4543322 22334456778999 589999999999999999999999999999999999 9
Q ss_pred CCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHH----HHHHhhccCCcEEEEeCC----CCHHHHHHH
Q psy14735 92 SINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI----DAAKNLLLKAKVIMFQGE----TPWETTLYC 163 (340)
Q Consensus 92 gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~v~i~~~----~~~~~~~~~ 163 (340)
||+++++ ...+.+|+.+++++++ +++.+.........++.... +.....+++++++++++. .+.+...++
T Consensus 79 gI~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~~~~~~~~~~~~~ 156 (304)
T cd01172 79 GIDTDGI-VDEGRPTTTKTRVIAR-NQQLLRVDREDDSPLSAEEEQRLIERIAERLPEADVVILSDYGKGVLTPRVIEAL 156 (304)
T ss_pred CCCcceE-ecCCCCceEEEEEecC-CcEEEEEecCCCCCCCHHHHHHHHHHHHHhhccCCEEEEEcCCCCccCHHHHHHH
Confidence 9999985 4456678888877775 45555444434445554432 223345789999999753 456788899
Q ss_pred HHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHh-cCCCEEEEEecCC
Q psy14735 164 LSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD-MKCNTVIITLGGS 242 (340)
Q Consensus 164 ~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~ 242 (340)
++.+ ++.+.++++|+++..+ ..++++|++++|++|++.+++....+.+++.+.++.+.+ .|++.++||+|++
T Consensus 157 ~~~a---~~~~~~v~~D~~~~~~----~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~~ 229 (304)
T cd01172 157 IAAA---RELGIPVLVDPKGRDY----SKYRGATLLTPNEKEAREALGDEINDDDELEAAGEKLLELLNLEALLVTLGEE 229 (304)
T ss_pred HHHH---HhcCCCEEEeCCCcch----hhccCCcEeCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 9999 8899999999987642 567889999999999999999766666777788887764 6899999999999
Q ss_pred ceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCC
Q psy14735 243 GVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSF 315 (340)
Q Consensus 243 G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~ 315 (340)
|++++++++ +.+++|+ ++++++|||||||+|+|||++++++ |+++++|+++|+++|+.+|++.|+.+.+
T Consensus 230 G~~~~~~~~-~~~~~~~-~~~~vvdttGAGDaf~ag~i~~l~~--g~~~~~al~~a~a~Aa~~~~~~g~~~~~ 298 (304)
T cd01172 230 GMTLFERDG-EVQHIPA-LAKEVYDVTGAGDTVIATLALALAA--GADLEEAAFLANAAAGVVVGKVGTAPVT 298 (304)
T ss_pred ccEEEcCCC-cEEEecC-CCCCCCCCcCccHHHHHHHHHHHHc--CCCHHHHHHHHHHHhheeeecCCCCCcC
Confidence 999998333 6889999 8899999999999999999999999 9999999999999999999999986543
No 26
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=9.4e-42 Score=307.52 Aligned_cols=278 Identities=19% Similarity=0.229 Sum_probs=229.7
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
.|+++|+.++|+++.++++|.+++.........++||+++|+|.+|++||.++.++|.+|+|.+|+.+++.|++ .||++
T Consensus 1 ~v~~iG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~~l~~-~gId~ 79 (290)
T cd01939 1 AVLCVGLTVLDFITTVDKYPFEDSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLDDFQS-RGIDI 79 (290)
T ss_pred CEEEEeeeeeEEEeeecCCCCCCcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHHHHHH-cCCce
Confidence 48999999999999999999998888877888899999999999999999999999999999999999999999 99999
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCC-
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESR- 174 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~- 174 (340)
+++...++..++.++++++++|+|+++.+.++...++.++++.. .+++++++++++..+ +...++++.+ ++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~-~~~~~~~~~~---~~~~~ 153 (290)
T cd01939 80 SHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKI--DLTQYGWIHFEGRNP-DETLRMMQHI---EEHNN 153 (290)
T ss_pred eeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhhh--hhccCCEEEEeccCH-HHHHHHHHHH---HHhcC
Confidence 99765555556666777788898988877777778888877653 358899999999776 4455677776 5554
Q ss_pred ------ceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHH--HhcCCCEEEEEecCCceEE
Q psy14735 175 ------AKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKL--LDMKCNTVIITLGGSGVVY 246 (340)
Q Consensus 175 ------~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l--~~~g~~~vvvt~G~~G~~~ 246 (340)
.++.+|+.... +.+..+++++|++++|++|++.+ +.. +..+++..+ ...+++.+|||+|++|+++
T Consensus 154 ~~~~~~~~v~~d~~~~~-~~~~~~l~~~di~~~n~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~vvvt~G~~G~~~ 226 (290)
T cd01939 154 RRPEIRITISVEVEKPR-EELLELAAYCDVVFVSKDWAQSR-GYK-----SPEECLRGEGPRAKKAALLVCTWGDQGAGA 226 (290)
T ss_pred cCCCcceEEEEEeccCc-hhhhhHHhhCCEEEEEhHHHHhc-CcC-----CHHHHHHhhhhhccCCcEEEEEcccCCeEE
Confidence 57788876443 23458899999999999998865 531 222333322 2357899999999999999
Q ss_pred EecCCCceEEEccCCC-cCcccCCCcchHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHhcccCC
Q psy14735 247 ATRDNPRLKTITVDHV-EYPIESEGVGDCFVGALAYYLCYFPQLP-LGEIILRSCHVARQSLFNVGL 311 (340)
Q Consensus 247 ~~~~~~~~~~~p~~~~-~~vvdttGaGDaF~ag~~~~l~~~~g~~-~~~a~~~a~~~Aa~~~~~~g~ 311 (340)
+.+++ +.+++|+ ++ .+++||+||||+|.|||++++++ |++ +++|+++|+++|++++++.|.
T Consensus 227 ~~~~~-~~~~~~~-~~~~~vvDt~GAGDsf~agfl~~l~~--g~~~~~~a~~~a~a~aa~~i~~~G~ 289 (290)
T cd01939 227 LGPDG-EYVHSPA-HKPIRVVDTLGAGDTFNAAVIYALNK--GPDDLSEALDFGNRVASQKCTGVGF 289 (290)
T ss_pred EcCCC-CEEEecC-CCCCCcccCCCchHHHHHHHHHHHHc--CCccHHHHHHHHHHHHHHHHhhhcC
Confidence 87643 5778898 65 46999999999999999999999 995 999999999999999999873
No 27
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=1.3e-41 Score=309.76 Aligned_cols=292 Identities=17% Similarity=0.178 Sum_probs=246.8
Q ss_pred EEEE-cccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 17 IVVV-GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 17 I~vi-G~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
|+++ =++++|+++.++++| +++..+....+.++||++.|+|.+|++||.++.++|.+|+|.+|+. .+.|++ .||++
T Consensus 5 ~~~~~~~p~~D~~~~~~~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~~l~~-~gv~~ 81 (312)
T PRK09513 5 VATITLNPAYDLVGFCPEIE-RGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQLFSE-LGIAN 81 (312)
T ss_pred EEEEecChHHeEEEEcCcee-cCCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HHHHHH-cCCCc
Confidence 6755 599999999999998 6888999999999999999999999999999999999999999986 688999 99998
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHH----HhhccCCcEEEEeCCCC----HHHHHHHHHhc
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAA----KNLLLKAKVIMFQGETP----WETTLYCLSKL 167 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~v~i~~~~~----~~~~~~~~~~a 167 (340)
.++.. . .+|+.++++++++|+++.+...+ ..+++.+++.+ .+.+++++++++++..+ .+...++++.+
T Consensus 82 ~~~~~-~-~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~~~~~~~~~~~~~~~a 157 (312)
T PRK09513 82 RFQVV-Q-GRTRINVKLTEKDGEVTDFNFSG--FEVTPADWERFVTDSLSWLGQFDMVAVSGSLPRGVSPEAFTDWMTRL 157 (312)
T ss_pred cEEEC-C-CCCEEEEEEEeCCCcEEEEeCCC--CCCCHHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCHHHHHHHHHHH
Confidence 77643 3 37888888888788887665443 34666655432 34578999999998654 46778888888
Q ss_pred hhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEE
Q psy14735 168 HVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYA 247 (340)
Q Consensus 168 ~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~ 247 (340)
++.+.++++|++... ....+....+++++|++|+..+++.+..+.+++.++++.+.++|++.++||+|++|++++
T Consensus 158 ---~~~g~~v~~D~~~~~--~~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~ 232 (312)
T PRK09513 158 ---RSQCPCIIFDSSREA--LVAGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHALREQGIAHVVISLGAEGALWV 232 (312)
T ss_pred ---HhcCCEEEEECChHH--HHHHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCcEEE
Confidence 888999999998542 222344567899999999999999876677778888888988999999999999999998
Q ss_pred ecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhhhh
Q psy14735 248 TRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNLFS 327 (340)
Q Consensus 248 ~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l~~ 327 (340)
..+ +.++.++ ++++++||+||||+|.|||++++++ |+++++|+++|+++|++++++.+ .+.|++++++++|.+
T Consensus 233 ~~~--~~~~~~~-~~~~~vDttGAGDaf~ag~i~~l~~--g~~~~~a~~~A~a~Aa~~~~~~~--~~~~~~~e~~~~l~~ 305 (312)
T PRK09513 233 NAS--GEWIAKP-PACDVVSTVGAGDSMVGGLIYGLLM--RESSEHTLRLATAVSALAVSQSN--VGITDRPQLAAMMAR 305 (312)
T ss_pred eCC--ceEEecC-CCccccCCCChHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhhCCC--CCCCCHHHHHHHHhc
Confidence 876 4677888 7789999999999999999999999 99999999999999999999987 468999999998865
No 28
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=6.1e-42 Score=323.01 Aligned_cols=302 Identities=19% Similarity=0.249 Sum_probs=234.4
Q ss_pred CCcEEEEcccccceeeecCCCCCC-----CC-----eeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHH
Q psy14735 14 EADIVVVGSCLVEFITYVQTLPKP-----EE-----TVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSY 83 (340)
Q Consensus 14 ~~~I~viG~~~iD~~~~~~~~~~~-----~~-----~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i 83 (340)
.+.|+++|++.+|++........+ .. .........++||+++|+|.+|++||.++.|+|.||+|.+|+.+
T Consensus 125 ~~~v~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l 204 (496)
T PLN02543 125 PPLVCCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEEL 204 (496)
T ss_pred CCeEEEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 366999999999998632110000 00 01234667899999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcccceEeeCCCCCceEEEEEc--CCCCeEEE-Ee-CCcCCCCCHHHHHHHHhhccCCcEEEEeCCC---C
Q psy14735 84 LEELRKYNSINTKYIWLLQDVTTGVCSKVIS--NKGTHQTN-II-PGANTYLSASDIDAAKNLLLKAKVIMFQGET---P 156 (340)
Q Consensus 84 ~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~--~~g~~~~~-~~-~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~---~ 156 (340)
++.|++ .||+++++.+.++.+|+.+++.++ ++| +.+. .. .+++..+++++++. +.+++++++|+++.. +
T Consensus 205 ~~~L~~-~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~~--~~l~~a~ilh~~~~~l~~~ 280 (496)
T PLN02543 205 VLMMNK-ERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELNL--AVLKEARMFHFNSEVLTSP 280 (496)
T ss_pred HHHHHH-cCCcccceEecCCCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcCH--hHhCCCceEEECChhhcCc
Confidence 999999 999999999888889999998884 455 4443 22 35556777777664 347899999998753 2
Q ss_pred --HHHHHHHHHhchhcccCCceEEEeCC--CCCCC-------CchhhhhcCcEEEeCHHHHHHhhcCCCC------Chh-
Q psy14735 157 --WETTLYCLSKLHVSLESRAKIIVNPS--PAVYP-------LNPIVMILADIICINEQEAEIITDMKIN------NEE- 218 (340)
Q Consensus 157 --~~~~~~~~~~a~~~~~~~~~v~~d~~--~~~~~-------~~~~~l~~~dil~~n~~E~~~l~~~~~~------~~~- 218 (340)
.+...++++.+ ++.|++|+||+. +.+|. .+..+++++||+++|++|++.|+|.... +++
T Consensus 281 ~~~~a~~~al~~A---k~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~ 357 (496)
T PLN02543 281 SMQSTLFRAIELS---KKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKRNYPPQY 357 (496)
T ss_pred hHHHHHHHHHHHH---HHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccccccchh
Confidence 36778889999 999999999986 34552 2456789999999999999999986311 111
Q ss_pred -----------------hHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCce------EEEccCCCcCcccCCCcchHH
Q psy14735 219 -----------------DLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL------KTITVDHVEYPIESEGVGDCF 275 (340)
Q Consensus 219 -----------------~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~------~~~p~~~~~~vvdttGaGDaF 275 (340)
+..+ +..+.+.|++.||||+|++|+++++++.... +++++ .+||||||||+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~~----~~VDTTGAGDAF 432 (496)
T PLN02543 358 YAESFEQTKNWRDYYHYTPEE-IAPLWHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLITP----FTCDRTGSGDAV 432 (496)
T ss_pred hhhhhhhhhcccccccCCHHH-HHHHHHCCCCEEEEEcCCCcEEEEECCCcccccccccccCCC----CCcCCCchHHHH
Confidence 2223 4566677999999999999999998642011 11222 248999999999
Q ss_pred HHHHHHHHHcC-----CCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhhhh
Q psy14735 276 VGALAYYLCYF-----PQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNLFS 327 (340)
Q Consensus 276 ~ag~~~~l~~~-----~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l~~ 327 (340)
.|||+++|++. .+.++++|+++|+++||++|+..|+.+++|+.+++++++.+
T Consensus 433 ~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~ 489 (496)
T PLN02543 433 VAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQ 489 (496)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHh
Confidence 99999999841 05789999999999999999999999999999999998864
No 29
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.1e-41 Score=304.95 Aligned_cols=282 Identities=26% Similarity=0.332 Sum_probs=236.2
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
.|+++|+.++|+++.++..|.+++.... .....+||+++|+|.+|++||.++.++|.+|+|.+|+.+++.|++ .||++
T Consensus 1 ~v~~~G~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~-~gI~~ 78 (288)
T cd01941 1 EIVVIGAANIDLRGKVSGSLVPGTSNPG-HVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEK-AGLNV 78 (288)
T ss_pred CeEEEEeEEEeeeecccCccccCCCCCe-eEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHH-cCCcc
Confidence 4899999999999999998877766554 567889999999999999999999999999999999999999999 99999
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEe-CCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCC
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNII-PGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESR 174 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~ 174 (340)
+++. ..+.+|+.++++++.+|++++... .+....++++.++...+.+.+++++++++..+.+....+++.+ ++.+
T Consensus 79 ~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a---~~~~ 154 (288)
T cd01941 79 RGIV-FEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKEAKPIVVDANLPEEALEYLLALA---AKHG 154 (288)
T ss_pred ceee-eCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHhh---hhcC
Confidence 9887 557789999999998899876332 2223345555555555568899999999888888888999999 8889
Q ss_pred ceEEEeCCCC--CCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec--C
Q psy14735 175 AKIIVNPSPA--VYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR--D 250 (340)
Q Consensus 175 ~~v~~d~~~~--~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~--~ 250 (340)
.++++|+... .++. ..+++++|++++|++|++.+++....+.+...++++.+.+.+++.+++|+|++|++++++ +
T Consensus 155 ~~v~~d~~~~~~~~~~-~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvit~G~~Ga~~~~~~~~ 233 (288)
T cd01941 155 VPVAFEPTSAPKLKKL-FYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLPGIKNVIVTLGAKGVLLSSREGG 233 (288)
T ss_pred CcEEEEccchHHhccc-hhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHHHHcCCcEEEEEeCCCcEEEEecCCC
Confidence 9999998643 2221 258899999999999999999875444344556677778889999999999999999987 3
Q ss_pred CCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhc
Q psy14735 251 NPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLF 307 (340)
Q Consensus 251 ~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~ 307 (340)
+ ..+++|++++++++||+||||+|.|+|++++++ |+++++|+++|+++|+.+|+
T Consensus 234 ~-~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~--g~~~~~al~~a~~~Aa~~~~ 287 (288)
T cd01941 234 V-ETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLE--GMSLDDSLRFAQAAAALTLE 287 (288)
T ss_pred c-eeEEecCCCCccceeCCCcHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhc
Confidence 2 567888722678999999999999999999999 99999999999999999987
No 30
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=8.3e-42 Score=315.59 Aligned_cols=300 Identities=15% Similarity=0.149 Sum_probs=238.3
Q ss_pred CCCCCcEEEEc-ccccceeeecCC-------CCCCCCeee----------------------cCceeeecCChHHHHHHH
Q psy14735 11 LKDEADIVVVG-SCLVEFITYVQT-------LPKPEETVK----------------------GYHFEQRFSGKGANQCVA 60 (340)
Q Consensus 11 ~~~~~~I~viG-~~~iD~~~~~~~-------~~~~~~~~~----------------------~~~~~~~~GG~~~n~a~~ 60 (340)
..++++|+.+| |+++|+...+++ +++++.++- ....+.++||++.|++++
T Consensus 16 ~~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~ 95 (367)
T PLN02379 16 GPRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRG 95 (367)
T ss_pred CCCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHH
Confidence 45678999999 999999999762 333332220 012567799999999999
Q ss_pred HHh-cCCceeEEEEecCChhhHHHHHHHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHH
Q psy14735 61 AAK-LRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAA 139 (340)
Q Consensus 61 l~~-lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~ 139 (340)
|++ ||.++.++|.+|+|.+|+.+.+.|++ .||++..+... +.+|+.|+++++++|+|++..+.++...++++++..
T Consensus 96 la~~LG~~~~~ig~VG~D~~G~~~~~~L~~-~GI~~~~~~~~-~~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~~- 172 (367)
T PLN02379 96 LSAGFGVSTGIIGACGDDEQGKLFVSNMGF-SGVDLSRLRAK-KGPTAQCVCLVDALGNRTMRPCLSSAVKLQADELTK- 172 (367)
T ss_pred HHHhcCCCEEEEEEeCCChhHHHHHHHHHH-cCCCccCcccC-CCCCceEEEEECCCCCccccCCccccccCChhHCCH-
Confidence 996 99999999999999999999999999 99998887543 458999999999999998876556666666666543
Q ss_pred HhhccCCcEEEEeC-CCCHHHHHHHHHhchhcccCCceEEEeCCCCC-----CCCchhhhh--cCcEEEeCHHHHHHhhc
Q psy14735 140 KNLLLKAKVIMFQG-ETPWETTLYCLSKLHVSLESRAKIIVNPSPAV-----YPLNPIVMI--LADIICINEQEAEIITD 211 (340)
Q Consensus 140 ~~~~~~~~~v~i~~-~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~-----~~~~~~~l~--~~dil~~n~~E~~~l~~ 211 (340)
+.++++++++++. ..+.+...++++.+ +++++++++|++... ++.+..+++ ++|++++|++|++.+++
T Consensus 173 -~~~~~~~~v~v~~~~~~~~~~~~~~~~A---~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~ 248 (367)
T PLN02379 173 -EDFKGSKWLVLRYGFYNLEVIEAAIRLA---KQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLR 248 (367)
T ss_pred -HHHhcCCEEEEEcccCCHHHHHHHHHHH---HHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhc
Confidence 3478899999984 24678899999999 999999999997532 233345553 89999999999999986
Q ss_pred CCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCC-cCcccCCCcchHHHHHHHHHHHcCCCCC
Q psy14735 212 MKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHV-EYPIESEGVGDCFVGALAYYLCYFPQLP 290 (340)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~-~~vvdttGaGDaF~ag~~~~l~~~~g~~ 290 (340)
... .++..++.+ +++.+++.++||+|++|+++++++ +.+++|+ ++ .+++|||||||+|+|||+|++++ |++
T Consensus 249 ~~~--~~~~~~~~~-~l~~~~~~vvvT~G~~Ga~~~~~~--~~~~v~a-~~~~~vVDTtGAGDaFaagfl~gl~~--G~~ 320 (367)
T PLN02379 249 GEQ--ESDPEAALE-FLAKYCNWAVVTLGSKGCIARHGK--EVVRVPA-IGETNAVDATGAGDLFASGFLYGLIK--GLS 320 (367)
T ss_pred CCC--CCCHHHHHH-HHHhcCCEEEEEECCCCeEEEECC--EEEEecC-CCCCCcccCCChhHHHHHHHHHHHHC--CCC
Confidence 421 123444444 445589999999999999999876 6888998 65 57999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhh
Q psy14735 291 LGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNL 325 (340)
Q Consensus 291 ~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l 325 (340)
+++|+++|+++|+.+|++.|++...+..+++.+.+
T Consensus 321 l~~a~~~g~~aAa~vi~~~G~~~~~~~~~~~~~~~ 355 (367)
T PLN02379 321 LEECCKVGACSGGSVVRALGGEVTPENWQWMYKQM 355 (367)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 99999999999999999999874333333344443
No 31
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=6.2e-42 Score=309.49 Aligned_cols=272 Identities=23% Similarity=0.315 Sum_probs=227.3
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
||+++|+.++|++...+.. .......+||+++|+|.++++||.++.++|.+|+|.+|+.+.+.|++ .||++
T Consensus 1 ~ilviG~~~~D~~~~~~~~--------~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~-~gi~~ 71 (295)
T cd01167 1 KVVCFGEALIDFIPEGSGA--------PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKE-AGVDT 71 (295)
T ss_pred CEEEEcceeEEEecCCCCC--------CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHHHHHH-cCCCc
Confidence 6999999999998754432 44667889999999999999999999999999999999999999999 99999
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHH-HHHHHhhccCCcEEEEeCCC-----CHHHHHHHHHhchh
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASD-IDAAKNLLLKAKVIMFQGET-----PWETTLYCLSKLHV 169 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~v~i~~~~-----~~~~~~~~~~~a~~ 169 (340)
+++.+..+.+|+.+++.++++|+|++....++......+. +. .+.+++++++++++.. ..+...++++.+
T Consensus 72 ~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-- 147 (295)
T cd01167 72 RGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELN--PDLLSEADILHFGSIALASEPSRSALLELLEAA-- 147 (295)
T ss_pred hheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCC--hhHhccCCEEEEechhhccchHHHHHHHHHHHH--
Confidence 9988777889999999998889998887665432211111 11 1347789999996531 235677888888
Q ss_pred cccCCceEEEeCCCC--CCC-------CchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEec
Q psy14735 170 SLESRAKIIVNPSPA--VYP-------LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLG 240 (340)
Q Consensus 170 ~~~~~~~v~~d~~~~--~~~-------~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G 240 (340)
++.+.++++|+... .|. .+.++++++|++++|++|++.+++. +...+.++.+.+++++.++||+|
T Consensus 148 -~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~-----~~~~~~~~~l~~~g~~~vvvt~G 221 (295)
T cd01167 148 -KKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGE-----EDPEEIAALLLLFGLKLVLVTRG 221 (295)
T ss_pred -HHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCC-----CCHHHHHHHHhhcCCCEEEEecC
Confidence 88999999998743 231 2356889999999999999999886 34455667788889999999999
Q ss_pred CCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHHHHhcccCC
Q psy14735 241 GSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQL-------PLGEIILRSCHVARQSLFNVGL 311 (340)
Q Consensus 241 ~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~-------~~~~a~~~a~~~Aa~~~~~~g~ 311 (340)
++|+++++++ +.+++|+ ++++++|||||||+|.|||++++++ |+ ++++|+++|+++|+.+|++.|+
T Consensus 222 ~~G~~~~~~~--~~~~~~a-~~~~vvDttGAGD~f~a~~~~~l~~--g~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~ 294 (295)
T cd01167 222 ADGALLYTKG--GVGEVPG-IPVEVVDTTGAGDAFVAGLLAQLLS--RGLLALDEDELAEALRFANAVGALTCTKAGA 294 (295)
T ss_pred CcceEEEECC--cceeeCC-CCcceeeCCCccHHHHHHHHHHHHh--CCcccccHHHHHHHHHHHHHhhHHHhcccCC
Confidence 9999999876 6788999 8899999999999999999999999 99 9999999999999999999986
No 32
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-41 Score=293.60 Aligned_cols=293 Identities=18% Similarity=0.236 Sum_probs=255.5
Q ss_pred EEEE-cccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 17 IVVV-GSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 17 I~vi-G~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
|+++ =|+.+|.++.++.+ +.|+.++.......+||+|.|||+.|+.||.++...|++|++ .|+.+.+.|++ .||..
T Consensus 2 I~TvTLNPaiD~~~~l~~l-~~g~vNr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~-tg~~~~~~l~~-~gi~~ 78 (310)
T COG1105 2 IYTVTLNPALDYTVFLDEL-ELGEVNRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGF-TGEFFVALLKD-EGIPD 78 (310)
T ss_pred eEEEecChhHhheeecccc-cccceeeeccceecCCCCceeHHHHHHHcCCCceEEEecCCc-cHHHHHHHHHh-cCCCc
Confidence 4444 58999999999888 789999999999999999999999999999999999999996 79999999999 99999
Q ss_pred cceEeeCCCCCceEEEEEcC-CCCeEEEEeCCcCCCCCHHHHHHHHh----hccCCcEEEEeCCCC----HHHHHHHHHh
Q psy14735 96 KYIWLLQDVTTGVCSKVISN-KGTHQTNIIPGANTYLSASDIDAAKN----LLLKAKVIMFQGETP----WETTLYCLSK 166 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~v~i~~~~~----~~~~~~~~~~ 166 (340)
+++.+. ..|+.++.+.+. +|..+-+ ..+.+.+++++++.+.+ .+++.|+++++|+.| .+.+.++++.
T Consensus 79 ~fv~v~--g~TRinvki~~~~~~~~Tei--n~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~ 154 (310)
T COG1105 79 AFVEVK--GDTRINVKILDEEDGEETEI--NFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRI 154 (310)
T ss_pred eEEEcc--CCCeeeEEEEecCCCcEEEe--cCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHH
Confidence 998775 467777777775 4444443 35668899998877554 367899999999665 7889999999
Q ss_pred chhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEE
Q psy14735 167 LHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVY 246 (340)
Q Consensus 167 a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~ 246 (340)
+ ++.+.++++|.++.. +...+-..+++++||.+|++.++|.+..+.++..++++.|++.|++.|||++|.+|+++
T Consensus 155 ~---~~~g~~vilD~Sg~~--L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~ 229 (310)
T COG1105 155 L---RQQGAKVILDTSGEA--LLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIVSLGADGALL 229 (310)
T ss_pred H---HhcCCeEEEECChHH--HHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEecCcccEE
Confidence 9 999999999999764 23344455999999999999999999998889999999999999999999999999999
Q ss_pred EecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhhh
Q psy14735 247 ATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNLF 326 (340)
Q Consensus 247 ~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l~ 326 (340)
++++ ..+++.+ |++++++|+||||+++|||++++++ ++++++++++|.++|+.++++.+. +.|+++++++.+.
T Consensus 230 ~~~~--~~~~a~~-p~~~vvstVGAGDs~VAGf~~~~~~--~~~~e~~l~~avA~g~a~~~~~~~--~~~~~~~~~~~~~ 302 (310)
T COG1105 230 VTAE--GVYFASP-PKVQVVSTVGAGDSMVAGFLAGLLK--GKSLEEALRFAVACGAAAASQKGT--GIPDLDQLKKIYA 302 (310)
T ss_pred EccC--CeEEEeC-CCcceecCcCchHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHhh
Confidence 9998 6888887 7899999999999999999999999 999999999999999999999886 4788888888776
Q ss_pred hc
Q psy14735 327 SL 328 (340)
Q Consensus 327 ~~ 328 (340)
+.
T Consensus 303 ~v 304 (310)
T COG1105 303 QV 304 (310)
T ss_pred he
Confidence 53
No 33
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=1.2e-40 Score=302.24 Aligned_cols=286 Identities=21% Similarity=0.283 Sum_probs=243.1
Q ss_pred ccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcccceEee
Q psy14735 22 SCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLL 101 (340)
Q Consensus 22 ~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v~~~ 101 (340)
++.+|+++.++.+ ..++..+......++||.+.|+|.++++||.++.++|.+|+| +|+.+.+.|++ .||+++++...
T Consensus 7 ~~~~D~~~~~~~~-~~~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~-~gI~~~~i~~~ 83 (303)
T TIGR03168 7 NPAIDLTIEVDGL-TPGEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAE-EGIKNDFVEVK 83 (303)
T ss_pred chHHeEEEEcCcc-ccCceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHH-cCCCceEEECC
Confidence 6789999999996 677888888889999999999999999999999999999998 79999999999 99999988654
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHH----hhccCCcEEEEeCC----CCHHHHHHHHHhchhcccC
Q psy14735 102 QDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK----NLLLKAKVIMFQGE----TPWETTLYCLSKLHVSLES 173 (340)
Q Consensus 102 ~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~v~i~~~----~~~~~~~~~~~~a~~~~~~ 173 (340)
..|+.++++.+++|+++.+...+ ..+++++++.+. +.+++++++++++. .+.+....+++.+ +++
T Consensus 84 --~~t~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~---~~~ 156 (303)
T TIGR03168 84 --GETRINVKIKESSGEETELNEPG--PEISEEELEQLLEKLRELLASGDIVVISGSLPPGVPPDFYAQLIAIA---RKR 156 (303)
T ss_pred --CCCEEeEEEEeCCCCEEEEeCcC--CCCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCCCHHHHHHHHHHH---HHC
Confidence 35667777777778776554433 357777665432 34789999999874 3567788899999 899
Q ss_pred CceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCc
Q psy14735 174 RAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPR 253 (340)
Q Consensus 174 ~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~ 253 (340)
+.++++|+.... ....+..++|++++|+.|++.+++....+.++..++++.+.+++++.+|||+|++|+++++.+ +
T Consensus 157 g~~v~~D~~~~~--~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vviT~g~~G~~~~~~~--~ 232 (303)
T TIGR03168 157 GAKVILDTSGEA--LREALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARELLDRGAENVLVSLGADGALLVTKE--G 232 (303)
T ss_pred CCEEEEECCcHH--HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEeecCCCcEEEeCC--c
Confidence 999999997531 222334579999999999999999876666778888888888899999999999999999876 5
Q ss_pred eEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhhh
Q psy14735 254 LKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNLF 326 (340)
Q Consensus 254 ~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l~ 326 (340)
.+++|+ ++++++|++||||+|.|+|++++++ |+++++|+++|+++|+.+|++.|+. .|+.+++++++.
T Consensus 233 ~~~~~~-~~~~~vDttGAGD~F~a~~~~~l~~--g~~i~~a~~~A~~~aa~~~~~~G~~--~~~~~~~~~~~~ 300 (303)
T TIGR03168 233 ALKATP-PKVEVVNTVGAGDSMVAGFLAGLAR--GLSLEEALRFAVAAGSAAAFSPGTG--LPDPEDVEELLD 300 (303)
T ss_pred eEEeeC-CcceeecCcCHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCCcC--CCCHHHHHHHHh
Confidence 788898 8889999999999999999999999 9999999999999999999999984 589999987664
No 34
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=2.2e-40 Score=298.55 Aligned_cols=276 Identities=21% Similarity=0.275 Sum_probs=236.3
Q ss_pred EEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcccc
Q psy14735 18 VVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKY 97 (340)
Q Consensus 18 ~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~ 97 (340)
.++|++++|+++.++.+| .++.++.......+||.++|+|.+|++||.++.++|.+|+| +|+.+.+.|++ .||++.+
T Consensus 4 ~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~l~~-~gi~~~~ 80 (289)
T cd01164 4 TVTLNPAIDLTIELDQLQ-PGEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEALLKE-EGIPDDF 80 (289)
T ss_pred EEecChHHeEEEEcCccc-CCceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHHHHH-cCCCceE
Confidence 567999999999999997 46788888899999999999999999999999999999998 79999999999 9999998
Q ss_pred eEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHH----hhccCCcEEEEeCCCCH----HHHHHHHHhchh
Q psy14735 98 IWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK----NLLLKAKVIMFQGETPW----ETTLYCLSKLHV 169 (340)
Q Consensus 98 v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~v~i~~~~~~----~~~~~~~~~a~~ 169 (340)
+... ..|+.++++.+.+|+++.+...+ ..+++++++.+. +.+++++++++++..+. +....+++.+
T Consensus 81 ~~~~--~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~-- 154 (289)
T cd01164 81 VEVA--GETRINVKIKEEDGTETEINEPG--PEISEEELEALLEKLKALLKKGDIVVLSGSLPPGVPADFYAELVRLA-- 154 (289)
T ss_pred EECC--CCCEEEEEEEeCCCCEEEEeCCC--CCCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCCCcCHHHHHHHHHHH--
Confidence 7654 35777777777667766554333 456666665432 34678999999987664 7788889998
Q ss_pred cccCCceEEEeCCCCCCCCchhhh-hcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEe
Q psy14735 170 SLESRAKIIVNPSPAVYPLNPIVM-ILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYAT 248 (340)
Q Consensus 170 ~~~~~~~v~~d~~~~~~~~~~~~l-~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~ 248 (340)
++.+.++++|+.... ..+++ +.+|++++|++|++.+++....+.++..++++.+.+++++.++||+|++|++++.
T Consensus 155 -~~~~~~i~~D~~~~~---~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~ 230 (289)
T cd01164 155 -REKGARVILDTSGEA---LLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLIERGAENVLVSLGADGALLVT 230 (289)
T ss_pred -HHcCCeEEEECChHH---HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEc
Confidence 888999999997531 22444 6999999999999999998777777888889999999999999999999999987
Q ss_pred cCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCC
Q psy14735 249 RDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGL 311 (340)
Q Consensus 249 ~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~ 311 (340)
.+ +.+++|+ ++.+++||+||||+|.|||++++++ |+++++|+++|+++|+.+|++.|+
T Consensus 231 ~~--~~~~~~~-~~~~vvDttGAGDaf~a~~i~~l~~--g~~~~~a~~~A~~~Aa~~~~~~G~ 288 (289)
T cd01164 231 KD--GVYRASP-PKVKVVSTVGAGDSMVAGFVAGLAQ--GLSLEEALRLAVAAGSATAFSPGT 288 (289)
T ss_pred CC--cEEEecC-CCccccCCCChHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCccC
Confidence 76 5778888 8889999999999999999999999 999999999999999999999884
No 35
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=1.8e-40 Score=301.82 Aligned_cols=293 Identities=15% Similarity=0.170 Sum_probs=236.9
Q ss_pred EEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcccc
Q psy14735 18 VVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKY 97 (340)
Q Consensus 18 ~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~ 97 (340)
.+..+|++|+++.++.++.+ ...+.......+||++.|+|.+|++||.++.++|.+|+ .+|+.+++.|++ ||++++
T Consensus 4 ~~t~np~~D~~~~~~~~~~~-~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~l~~--gI~~~~ 79 (309)
T PRK13508 4 TVTLNPSIDISYPLDELKLD-TVNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEHLDD--QIKHAF 79 (309)
T ss_pred EEecChHHeEEEEeCCeeeC-CeEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHc--CCCceE
Confidence 34589999999999998655 46677788899999999999999999999999999996 689999999986 999987
Q ss_pred eEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHH----HHHhhccCCcEEEEeCCCC----HHHHHHHHHhchh
Q psy14735 98 IWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDID----AAKNLLLKAKVIMFQGETP----WETTLYCLSKLHV 169 (340)
Q Consensus 98 v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~v~i~~~~~----~~~~~~~~~~a~~ 169 (340)
+... .+|+.+.++++ +|+++++...++ .+..++.+ .+.+.+++++++++++..+ .+....+++.+
T Consensus 80 ~~~~--~~t~~~~~~~~-~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a-- 152 (309)
T PRK13508 80 YKIK--GETRNCIAILH-EGQQTEILEKGP--EISVQEADGFLHHFKQLLESVEVVAISGSLPAGLPVDYYAQLIELA-- 152 (309)
T ss_pred EECC--CCCeeeEEEEe-CCCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCcCHHHHHHHHHHH--
Confidence 6543 35777766665 688887765554 35444432 2234578999999998654 46678888999
Q ss_pred cccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEe
Q psy14735 170 SLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKIN-NEEDLADCMEKLLDMKCNTVIITLGGSGVVYAT 248 (340)
Q Consensus 170 ~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~-~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~ 248 (340)
++.+.++++|+...........+..+|++++|++|++.+++.+.. +.++..+.++.++..|++.++||+|++|+++++
T Consensus 153 -~~~g~~v~~D~~~~~~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vvvT~G~~G~~~~~ 231 (309)
T PRK13508 153 -NQAGKPVVLDCSGAALQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQPLFEGIEWIIVSLGADGAFAKH 231 (309)
T ss_pred -HHCCCEEEEECCcHHHHHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCceEEEe
Confidence 899999999997542111112246799999999999999987543 445666777777778999999999999999987
Q ss_pred cCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhhhhc
Q psy14735 249 RDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNLFSL 328 (340)
Q Consensus 249 ~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l~~~ 328 (340)
++ +.++.|+ ++++++|||||||+|.|||++++++ |+++++|+++|+++|++++++.+.. ..++.++++++...
T Consensus 232 ~~--~~~~~~~-~~v~vvDttGAGDaF~Agfi~~l~~--g~~~~~al~~a~a~aa~~~~~~~~~--~~~~~~~~~~~~~i 304 (309)
T PRK13508 232 ND--TFYKVDI-PKIEVVNPVGSGDSTVAGIASGLLH--QEDDADLLKKANVLGMLNAQEKQTG--HVNMANYDELYNQI 304 (309)
T ss_pred CC--ceEEEeC-CCccccCCcChhHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCcCcC--CCCHHHHHHHHhce
Confidence 65 6778888 8899999999999999999999999 9999999999999999999998864 56777888887654
Q ss_pred c
Q psy14735 329 K 329 (340)
Q Consensus 329 ~ 329 (340)
+
T Consensus 305 ~ 305 (309)
T PRK13508 305 E 305 (309)
T ss_pred E
Confidence 4
No 36
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2e-40 Score=295.04 Aligned_cols=264 Identities=20% Similarity=0.233 Sum_probs=221.0
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
+|+++|++++|+++.++.+|.+++..+.......+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++ ++++
T Consensus 1 ~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~~l~~--~~~~ 78 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLEELES--GGDK 78 (265)
T ss_pred CEEEEeeeeEEEEEEecCCCCCCceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHh--cCCc
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999987 6666
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCCc
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRA 175 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~ 175 (340)
.++... +..|+.++++++++|+|++....... . ++++. +.+++++++++++..+ ..++++.+ ++.+
T Consensus 79 ~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~--~--~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~a---~~~~- 144 (265)
T cd01947 79 HTVAWR-DKPTRKTLSFIDPNGERTITVPGERL--E--DDLKW--PILDEGDGVFITAAAV---DKEAIRKC---RETK- 144 (265)
T ss_pred ceEEec-CCCCceEEEEECCCCcceEEecCCCC--c--ccCCH--hHhccCCEEEEecccc---cHHHHHHH---HHhC-
Confidence 766543 56899999999989999887544322 1 11111 2367899999988653 34566777 6654
Q ss_pred eEEEeCCCCCC-CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCce
Q psy14735 176 KIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRL 254 (340)
Q Consensus 176 ~v~~d~~~~~~-~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~ 254 (340)
.+++|+..... +.+.++++++|++++|++|++.+++ ++.+.+++++.++||+|++|+++++++ +.
T Consensus 145 ~~~~d~~~~~~~~~~~~~~~~~d~~~~n~~e~~~l~~------------~~~~~~~~~~~viit~G~~Ga~~~~~~--~~ 210 (265)
T cd01947 145 LVILQVTPRVRVDELNQALIPLDILIGSRLDPGELVV------------AEKIAGPFPRYLIVTEGELGAILYPGG--RY 210 (265)
T ss_pred CeEeccCccccchhHHHHhhhCCEEEeCHHHHHHhhh------------HHHHHhccCCEEEEEeCCCCeEEEECC--ee
Confidence 56777765432 2346788999999999999998753 345667899999999999999999865 68
Q ss_pred EEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCC
Q psy14735 255 KTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQ 312 (340)
Q Consensus 255 ~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~ 312 (340)
+++|+ ++++++|+|||||+|.|||++++++ |+++++|+++|+++|+.++++.|++
T Consensus 211 ~~~~~-~~~~vvDttGAGDaF~ag~l~~l~~--g~~~~~al~~a~~~Aa~~v~~~G~~ 265 (265)
T cd01947 211 NHVPA-KKAKVPDSTGAGDSFAAGFIYGLLK--GWSIEEALELGAQCGAICVSHFGPY 265 (265)
T ss_pred EECCC-CCCCCCCCCCchHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhccCCC
Confidence 88999 8889999999999999999999999 9999999999999999999999863
No 37
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=1.4e-40 Score=302.46 Aligned_cols=293 Identities=15% Similarity=0.173 Sum_probs=237.3
Q ss_pred EEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcccce
Q psy14735 19 VVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYI 98 (340)
Q Consensus 19 viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v 98 (340)
+.=++.+|.++.++++|.++ ..+.+....++||++.|+|.+|++||.++.++|.+|+ ++|+.+++.|++ .||+++++
T Consensus 4 ~~~~p~~d~~~~~~~~~~~~-~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~-~~G~~i~~~l~~-~GV~~~~~ 80 (309)
T TIGR01231 4 VTLNPSVDISYPLTALKLDT-VNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGG-KLGEFIEKELDH-SDIKHAFY 80 (309)
T ss_pred EEcchHHeEEEEcCCeeeCc-eEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHH-cCCceeEE
Confidence 44689999999999987666 6688889999999999999999999999999999997 589999999999 99999988
Q ss_pred EeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHH----HHHHHHhhccCCcEEEEeCCC----CHHHHHHHHHhchhc
Q psy14735 99 WLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSAS----DIDAAKNLLLKAKVIMFQGET----PWETTLYCLSKLHVS 170 (340)
Q Consensus 99 ~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~v~i~~~~----~~~~~~~~~~~a~~~ 170 (340)
... ..|+.++.++. +|+++++...++. +..+ .++...+.+++++++++++.. +.....++++.+
T Consensus 81 ~~~--~~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a--- 152 (309)
T TIGR01231 81 KIS--GETRNCIAILH-EGQQTEILEQGPE--ISNQEAAGFLKHFEQLLEKVEVVAISGSLPKGLPQDYYAQIIERC--- 152 (309)
T ss_pred ECC--CCCEEeEEEEe-CCCEEEEeCCCCC--CCHHHHHHHHHHHHHHhccCCEEEEECCCCCCcCHHHHHHHHHHH---
Confidence 654 34666655554 6888887665543 3322 223333457899999999864 356788899999
Q ss_pred ccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec
Q psy14735 171 LESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKIN-NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR 249 (340)
Q Consensus 171 ~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~-~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 249 (340)
++.+.++++|+.+.........+.++|++++|++|++.+++.+.. +.++..++++.+...|++.+++|+|++|++++++
T Consensus 153 ~~~g~~v~~D~~~~~~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vivT~G~~G~~~~~~ 232 (309)
T TIGR01231 153 QNKGVPVVLDCSGATLQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALSQPLFSGIEWIIVSLGAQGAFAKHG 232 (309)
T ss_pred HhCCCeEEEECChHHHHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCceEEEeC
Confidence 889999999997542111123346799999999999999986542 4456667777777789999999999999999987
Q ss_pred CCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhhhhcc
Q psy14735 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNLFSLK 329 (340)
Q Consensus 250 ~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l~~~~ 329 (340)
+ +.+++|+ ++++++||+||||+|.|||++++++ |+++++|+++|+++|++++++.++. ..++++++++..+.+
T Consensus 233 ~--~~~~~~~-~~v~vvDttGAGDaF~agfl~~l~~--g~~~~~a~~~a~a~aa~~~~~~~~~--~~~~~~~~~~~~~i~ 305 (309)
T TIGR01231 233 H--TFYKVNI-PTISVVNPVGSGDSTVAGITSALLN--HESDHDLLKKANTLGMLNAQEAQTG--HVNLNNYDDLFNQIE 305 (309)
T ss_pred C--eeEEeeC-CccCcCCCcchHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCcccC--CCCHHHHHHHHhceE
Confidence 6 5778888 8889999999999999999999999 9999999999999999999987753 467788888776543
No 38
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=1.8e-40 Score=295.17 Aligned_cols=261 Identities=15% Similarity=0.138 Sum_probs=215.6
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
||+++|++++|.+. . ....++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++ .||++
T Consensus 1 ~v~~iG~~~~D~~~------~--------~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~-~gI~~ 65 (264)
T cd01940 1 RLAAIGDNVVDKYL------H--------LGKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKR-LGVDI 65 (264)
T ss_pred CeEEEcceEEEEec------c--------CceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHHHHHH-cCCCh
Confidence 68999999999974 1 145689999999999999999999999999999999999999999 99999
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEeC-CcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCC
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIP-GANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESR 174 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~ 174 (340)
+++...+ .+|+.+++. +++|+|++..+. ++.....+.+.+ ...+++++++++++..+.+...++++.+ ++++
T Consensus 66 ~~v~~~~-~~t~~~~~~-~~~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~a---~~~g 138 (264)
T cd01940 66 SHCRVKE-GENAVADVE-LVDGDRIFGLSNKGGVAREHPFEAD--LEYLSQFDLVHTGIYSHEGHLEKALQAL---VGAG 138 (264)
T ss_pred hheEEcC-CCCceEEEE-ecCCceEEEeecCCcHHhcccCccc--HhHHhcCCEEEEcccccHHHHHHHHHHH---HHcC
Confidence 9987754 578888754 567888876553 322222221111 1346889999999766667788899999 8999
Q ss_pred ceEEEeCCCCCCC-CchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCc
Q psy14735 175 AKIIVNPSPAVYP-LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPR 253 (340)
Q Consensus 175 ~~v~~d~~~~~~~-~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~ 253 (340)
.++++|+...... .+..+++++|++++|++|... ++..++++.+++++++.++||+|++|+++++++ +
T Consensus 139 ~~v~~D~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~vvvT~G~~G~~~~~~~--~ 207 (264)
T cd01940 139 ALISFDFSDRWDDDYLQLVCPYVDFAFFSASDLSD---------EEVKAKLKEAVSRGAKLVIVTRGEDGAIAYDGA--V 207 (264)
T ss_pred CEEEEcCcccCCHHHHHhhcccCCEEEechhhcCc---------chHHHHHHHHHHcCCCEEEEEECCCCeEEEeCC--e
Confidence 9999999876421 234678999999999876531 356667788888899999999999999999865 6
Q ss_pred eEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHhcccCCC
Q psy14735 254 LKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLP-LGEIILRSCHVARQSLFNVGLQ 312 (340)
Q Consensus 254 ~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~-~~~a~~~a~~~Aa~~~~~~g~~ 312 (340)
.+++|+ ++++++|||||||+|.|||++++++ |++ +++|+++|+++|++++++.|++
T Consensus 208 ~~~~~~-~~~~~vDttGAGDaf~ag~i~~l~~--g~~~~~~al~~a~~~aa~~~~~~G~~ 264 (264)
T cd01940 208 FYSVAP-RPVEVVDTLGAGDSFIAGFLLSLLA--GGTAIAEAMRQGAQFAAKTCGHEGAF 264 (264)
T ss_pred EEecCC-cCCCCCCCCCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHhcccCCC
Confidence 888898 8899999999999999999999999 999 9999999999999999999863
No 39
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=2.1e-40 Score=302.78 Aligned_cols=274 Identities=16% Similarity=0.175 Sum_probs=223.8
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhc-CC--ce--eEEEEecCChhhHHHHHHHhhh
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKL-RA--SV--ALISKLGNDKFGKSYLEELRKY 90 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~l-G~--~v--~~~~~vG~D~~g~~i~~~l~~~ 90 (340)
+++++|++++|.+. .++. .....++||++.|+|+++++| |. ++ .+++.+|+| +|+.+.+.|++
T Consensus 1 ~~~~~G~~~~d~i~------~~~~----~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~- 68 (328)
T cd01943 1 DFTTLGMFIIDEIE------YPDS----EPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELES- 68 (328)
T ss_pred CccccCcEEeeccc------cCCC----CccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHh-
Confidence 47899999999986 3321 355678999999999999999 44 66 889999999 89999999999
Q ss_pred cCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCH--HHHHHHHHhch
Q psy14735 91 NSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPW--ETTLYCLSKLH 168 (340)
Q Consensus 91 ~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~--~~~~~~~~~a~ 168 (340)
.||++++ ...++.+|+.+++.++++|+|.++...+++..+++++++. ..+..++++|+++..+. +...++++.+
T Consensus 69 ~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~--~~~~~a~~~hl~~~~~~~~~~~~~~~~~a- 144 (328)
T cd01943 69 WGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNS--TPLIRSSCIHLICSPERCASIVDDIINLF- 144 (328)
T ss_pred cCCceEE-EeCCCCcchhhhhhcCCCCcceeeecCccccccccccccc--ccccCCCeEEEECCHHHHHHHHHHHHHHH-
Confidence 9999988 6666778999988888889988877767777777777764 23778999999887644 7788888888
Q ss_pred hccc------CCceEEEeCCCCC-----CCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHH-----H---HHHh
Q psy14735 169 VSLE------SRAKIIVNPSPAV-----YPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCM-----E---KLLD 229 (340)
Q Consensus 169 ~~~~------~~~~v~~d~~~~~-----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~-----~---~l~~ 229 (340)
++ ++.++++|+.+.. ++.+..+++++|++++|++|++.+++....+.....+.. . .+..
T Consensus 145 --~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (328)
T cd01943 145 --KLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDEEKEAVLQALLFSGILQ 222 (328)
T ss_pred --HhhccccCCccEEEEecCCcccChhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchhhhhhhHHHHHHHhhhc
Confidence 76 7888999987652 233568999999999999999999987533222121111 1 2245
Q ss_pred cCCCEEEEEecCCceEEEec-CCCceEEEccCCCc---CcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q psy14735 230 MKCNTVIITLGGSGVVYATR-DNPRLKTITVDHVE---YPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQS 305 (340)
Q Consensus 230 ~g~~~vvvt~G~~G~~~~~~-~~~~~~~~p~~~~~---~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~ 305 (340)
.+++.+|||+|++|+++++. ++ +.+++|+ +++ +++|||||||+|.|||++++++ |+++++|+++|+++|+++
T Consensus 223 ~g~~~vvvt~G~~Ga~~~~~~~~-~~~~~p~-~~v~~~~vvDttGAGDaF~agfl~~l~~--g~~~~~al~~a~a~Aa~~ 298 (328)
T cd01943 223 DPGGGVVLRCGKLGCYVGSADSG-PELWLPA-YHTKSTKVVDPTGGGNSFLGGFAAGLAL--TKSIDEACIYGSVAASFA 298 (328)
T ss_pred cCCCEEEEEeCCCCCEEEecCCC-ceEecCC-ccCCCCcccCCCCchHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 68999999999999999985 32 6778888 777 8999999999999999999999 999999999999999999
Q ss_pred hcccCC
Q psy14735 306 LFNVGL 311 (340)
Q Consensus 306 ~~~~g~ 311 (340)
+++.|.
T Consensus 299 v~~~G~ 304 (328)
T cd01943 299 IEQVGL 304 (328)
T ss_pred HccCCC
Confidence 999994
No 40
>PLN02548 adenosine kinase
Probab=100.00 E-value=1.3e-39 Score=299.10 Aligned_cols=284 Identities=21% Similarity=0.261 Sum_probs=225.2
Q ss_pred EcccccceeeecCC--------------------CCCCCCeeecCceeeecCChHHHHHHHH---HhcCCceeEEEEecC
Q psy14735 20 VGSCLVEFITYVQT--------------------LPKPEETVKGYHFEQRFSGKGANQCVAA---AKLRASVALISKLGN 76 (340)
Q Consensus 20 iG~~~iD~~~~~~~--------------------~~~~~~~~~~~~~~~~~GG~~~n~a~~l---~~lG~~v~~~~~vG~ 76 (340)
+|++++|++..+++ +|.+++.+........+||++.|++..+ +++|.++.|+|.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~ 80 (332)
T PLN02548 1 MGNPLLDISAVVDQDFLDKYDVKLNNAILAEEKHLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGK 80 (332)
T ss_pred CCCceeEEEEecCHHHHHHcCCCCCceeechHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcC
Confidence 47788888766442 3445556666788899999999986544 567999999999999
Q ss_pred ChhhHHHHHHHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHH--HHhhccCCcEEEEeCC
Q psy14735 77 DKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDA--AKNLLLKAKVIMFQGE 154 (340)
Q Consensus 77 D~~g~~i~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~v~i~~~ 154 (340)
|.+|+.+++.|++ .||+++++.. .+.+|+.++++++ +|+|+++.+.++...++.++++. ..+.++.++++++++.
T Consensus 81 D~~g~~i~~~L~~-~gVd~~~~~~-~~~~T~~~~i~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~ 157 (332)
T PLN02548 81 DKFGEEMKKCATA-AGVNVHYYED-ESTPTGTCAVLVV-GGERSLVANLSAANCYKVEHLKKPENWALVEKAKFYYIAGF 157 (332)
T ss_pred ChhHHHHHHHHHH-cCCceeeecc-CCCCCceEEEEEe-cCCceeeeccchhhcCCHHHhcChhhHhHHhhCCEEEEEEE
Confidence 9999999999999 9999998754 5678999988886 78888876666666666665532 1234678999999863
Q ss_pred ---CCHHHHHHHHHhchhcccCCceEEEeCCCCCC-----CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHH
Q psy14735 155 ---TPWETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEK 226 (340)
Q Consensus 155 ---~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~-----~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~ 226 (340)
.+.+....+++.+ ++++.++.+|++...| +.+.++++.+|++++|++|++.+++....+.++..+.++.
T Consensus 158 ~~~~~~~~~~~~~~~a---~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~ 234 (332)
T PLN02548 158 FLTVSPESIMLVAEHA---AANNKTFMMNLSAPFICEFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALK 234 (332)
T ss_pred EccCCHHHHHHHHHHH---HHcCCEEEEECCChhHHHHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHH
Confidence 3567888888998 8889988899875543 2356788999999999999999988643333445555554
Q ss_pred HHhc------CCCEEEEEecCCceEEEecCCCceEEEccC--CCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHH
Q psy14735 227 LLDM------KCNTVIITLGGSGVVYATRDNPRLKTITVD--HVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRS 298 (340)
Q Consensus 227 l~~~------g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~--~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a 298 (340)
+.++ +++.+|||+|++|++++.++ +.+++|++ ++++++|||||||+|.|||++++++ |+++++|+++|
T Consensus 235 l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~--~~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~l~~--g~~l~eal~~a 310 (332)
T PLN02548 235 ISALPKASGTHKRTVVITQGADPTVVAEDG--KVKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQ--GKDIEECVRAG 310 (332)
T ss_pred HHHhhhhccccCCEEEEEeCCCcEEEEECC--eEEEeccccCCcCccccCCCchHHHHHHHHHHHHc--CCCHHHHHHHH
Confidence 4432 57899999999999998766 57777751 3457999999999999999999999 99999999999
Q ss_pred HHHHHHHhcccCCCC
Q psy14735 299 CHVARQSLFNVGLQN 313 (340)
Q Consensus 299 ~~~Aa~~~~~~g~~~ 313 (340)
+++|+++|++.|+.+
T Consensus 311 ~aaAa~~v~~~G~~~ 325 (332)
T PLN02548 311 NYAANVIIQRSGCTY 325 (332)
T ss_pred HHHHHHHHhccCCCC
Confidence 999999999999864
No 41
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=1e-38 Score=306.22 Aligned_cols=300 Identities=16% Similarity=0.170 Sum_probs=237.1
Q ss_pred CCCCCcEEEEcccccceeeec--CCC-C-CCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHH
Q psy14735 11 LKDEADIVVVGSCLVEFITYV--QTL-P-KPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEE 86 (340)
Q Consensus 11 ~~~~~~I~viG~~~iD~~~~~--~~~-~-~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~ 86 (340)
.+..++|+++|+.++|+++.+ +.+ | .+...+........+|| ++|+|.+|++||.++.++|.+|+|.+|+.+.+.
T Consensus 7 ~~~~~~ilviG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~ 85 (473)
T PRK11316 7 DFERAGVLVVGDVMLDRYWYGPTSRISPEAPVPVVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGIDEAARALSKL 85 (473)
T ss_pred hhCCCcEEEECccEEeeeeecccceeCCCCCCCEEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHHHHH
Confidence 355678999999999999875 333 2 33445666778888999 689999999999999999999999999999999
Q ss_pred HhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHH-HHHHhhccCCcEEEEeCCCC--HHHHHHH
Q psy14735 87 LRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDI-DAAKNLLLKAKVIMFQGETP--WETTLYC 163 (340)
Q Consensus 87 l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~v~i~~~~~--~~~~~~~ 163 (340)
|++ .||+++++.. .+.+|+.++++++.+++............++.+.+ +...+.+++++++++++... .+....+
T Consensus 86 L~~-~gI~~~~v~~-~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is~~~~~~~~~~~~~ 163 (473)
T PRK11316 86 LAA-VGVKCDFVSV-PTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQALPSIGALVLSDYAKGALASVQAM 163 (473)
T ss_pred HHH-cCCceeEEEc-CCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHHhccCCEEEEecCCccchhHHHHH
Confidence 999 9999998876 46789988888875443222211112223344443 22334588999999975321 2557888
Q ss_pred HHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHH-hcCCCEEEEEecCC
Q psy14735 164 LSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLL-DMKCNTVIITLGGS 242 (340)
Q Consensus 164 ~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~-~~g~~~vvvt~G~~ 242 (340)
++.+ ++.+.++++||.+.. ...++.+|++++|++|++.+++.. .+.++..+.++.++ ++|++.++||+|++
T Consensus 164 ~~~~---k~~g~~vv~Dp~~~~----~~~~~~~dil~pN~~Ea~~l~g~~-~~~~~~~~~~~~l~~~~g~~~vvVT~G~~ 235 (473)
T PRK11316 164 IQLA---RKAGVPVLIDPKGTD----FERYRGATLLTPNLSEFEAVVGKC-KDEAELVEKGMKLIADYDLSALLVTRSEQ 235 (473)
T ss_pred HHHH---HhcCCeEEEeCCCCC----ccccCCCeEECcCHHHHHHHhCCC-CCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 8888 889999999997642 144678999999999999999842 33445555666665 57999999999999
Q ss_pred ceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcc
Q psy14735 243 GVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLP 322 (340)
Q Consensus 243 G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~ 322 (340)
|++++++++ ..+++|+ ++++++||+||||+|.|||++++++ |+++++|+++|+++|+.++++.|+.+ ++.++++
T Consensus 236 G~~~~~~~~-~~~~~~~-~~v~vvDttGAGDaF~aa~~~~l~~--g~~~~~al~~A~a~Aa~~v~~~G~~~--~~~~~l~ 309 (473)
T PRK11316 236 GMTLLQPGK-APLHLPT-QAREVYDVTGAGDTVISVLAAALAA--GNSLEEACALANAAAGVVVGKLGTST--VSPIELE 309 (473)
T ss_pred CcEEEecCC-ceEEecC-cCCCCCCCCCCcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhhcccCCCcc--CCHHHHH
Confidence 999887663 3578888 8889999999999999999999999 99999999999999999999999864 6888888
Q ss_pred hhhhh
Q psy14735 323 DNLFS 327 (340)
Q Consensus 323 ~~l~~ 327 (340)
+++..
T Consensus 310 ~~l~~ 314 (473)
T PRK11316 310 NALRG 314 (473)
T ss_pred HHHhc
Confidence 88874
No 42
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=3.9e-38 Score=279.51 Aligned_cols=255 Identities=15% Similarity=0.157 Sum_probs=209.5
Q ss_pred CcEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCc
Q psy14735 15 ADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSIN 94 (340)
Q Consensus 15 ~~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~ 94 (340)
++|+++|++++|+.... + +.++||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++ .||+
T Consensus 1 ~~v~~iG~~~~D~~~~~------~--------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~~~l~~-~gI~ 65 (260)
T PRK09813 1 KKLATIGDNCVDIYPQL------G--------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLAR-MGVD 65 (260)
T ss_pred CeEEEeccceeeecccC------C--------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHHHHHHH-cCCc
Confidence 47999999999998522 1 2589999999999999999999999999999999999999999 9999
Q ss_pred ccceEeeCCCCCceEEEEEcCCCCeEEEEeC-CcC--CCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcc
Q psy14735 95 TKYIWLLQDVTTGVCSKVISNKGTHQTNIIP-GAN--TYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSL 171 (340)
Q Consensus 95 ~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~-~~~--~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~ 171 (340)
++++.+.+ .+|+.+++.++ +++|++..+. +.. ..+++.+++ .+.++++++++... ...++++.+ +
T Consensus 66 ~~~~~~~~-~~t~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~----~l~~~~~v~~~~~~---~~~~~~~~~---~ 133 (260)
T PRK09813 66 ISHVHTKH-GVTAQTQVELH-DNDRVFGDYTEGVMADFALSEEDYA----WLAQYDIVHAAIWG---HAEDAFPQL---H 133 (260)
T ss_pred chheeeec-CCCceEEEEEe-CCcEEeeccCCCcccccccCHHHHH----HHHhCCEEEEeccc---hHHHHHHHH---H
Confidence 99997765 47888887775 6888776443 322 334444433 36789999986432 245677888 8
Q ss_pred cCCceEEEeCCCCCC-CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecC
Q psy14735 172 ESRAKIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRD 250 (340)
Q Consensus 172 ~~~~~v~~d~~~~~~-~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 250 (340)
+++.++++|+..... +.+..+++++|+++.|+++. ..++.++++.+.+.|++.++||+|++|+++++++
T Consensus 134 ~~~~~v~~D~~~~~~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~~~~g~~~viit~G~~Ga~~~~~~ 203 (260)
T PRK09813 134 AAGKLTAFDFSDKWDSPLWQTLVPHLDYAFASAPQE----------DEFLRLKMKAIVARGAGVVIVTLGENGSIAWDGA 203 (260)
T ss_pred HcCCeEEEEcCCCccHHHHHHhCCceeEEEecCCcc----------hHHHHHHHHHHHHcCCCEEEEEECCCceEEEECC
Confidence 899999999975431 23456789999999886531 1456677888888899999999999999999876
Q ss_pred CCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCC
Q psy14735 251 NPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGL 311 (340)
Q Consensus 251 ~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~ 311 (340)
+.+++|+ ++++++|||||||+|.|||++++++ |+++++|+++|+++|+.+++++|+
T Consensus 204 --~~~~~~~-~~~~~vDttGAGDaF~ag~i~~~~~--g~~~~~al~~a~~~aa~~~~~~G~ 259 (260)
T PRK09813 204 --QFWRQAP-EPVTVVDTMGAGDSFIAGFLCGWLA--GMTLPQAMAQGTACAAKTIQYHGA 259 (260)
T ss_pred --EEEecCC-cccCCCCCCCchHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhccCC
Confidence 6889999 8889999999999999999999999 999999999999999999999986
No 43
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=7.5e-35 Score=264.97 Aligned_cols=266 Identities=17% Similarity=0.112 Sum_probs=216.7
Q ss_pred CCCCcEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhc
Q psy14735 12 KDEADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYN 91 (340)
Q Consensus 12 ~~~~~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~ 91 (340)
...++|+++|+.++|+++.+ ++ ....++||+++|+|.+|++||.++.++|.+|+|.. .
T Consensus 9 ~~~~~vlvvG~~~~D~i~~~------g~-----~~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~-----------~ 66 (335)
T PLN02630 9 IPQRRVLIVGNYCHDVLIQN------GS-----VTAESLGGAASFISNVLDALSVECELVSKVGPDFL-----------Y 66 (335)
T ss_pred CCCCCEEEEeeeeeeEEEeC------Cc-----EEEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc-----------c
Confidence 33589999999999999743 32 14578999999999999999999999999999842 3
Q ss_pred CCcccceEeeCCCCCceEEEEEcC-----CCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHh
Q psy14735 92 SINTKYIWLLQDVTTGVCSKVISN-----KGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSK 166 (340)
Q Consensus 92 gi~~~~v~~~~~~~t~~~~i~~~~-----~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 166 (340)
+++...+.. ++.+|+.+++++++ +|+++++...+++..+++++++.. .++.++++++.++.+++...++++.
T Consensus 67 ~v~~~~~~~-~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di~~~--~~~~~~~~~l~~ei~~e~~~~~~~~ 143 (335)
T PLN02630 67 QVSHPPIVI-PDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPDM--RYEFGMAVGVAGEILPETLERMVEI 143 (335)
T ss_pred cccccceec-CCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHCCHH--HhcccceeeecCCCcHHHHHHHHHH
Confidence 566555533 56789998887776 568888888899999999988653 3677889999888888999999998
Q ss_pred chhccc-----CCceEEEeCCCC---CCC----CchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCE
Q psy14735 167 LHVSLE-----SRAKIIVNPSPA---VYP----LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNT 234 (340)
Q Consensus 167 a~~~~~-----~~~~v~~d~~~~---~~~----~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~ 234 (340)
+ +. ++..+++|+.+. .|+ ...++++++|++++|++|++.+ . .++ + .+ ...
T Consensus 144 a---~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~~L~~iDil~~ne~Ea~~l-~-----~~~---~----~~--~~~ 205 (335)
T PLN02630 144 C---DVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDMLPRIGFLKASSEEALFI-D-----VEE---V----RQ--KCC 205 (335)
T ss_pred h---hhheeccCceEEecCCcccccccchhhHHHHHHHHHhCCEEEecHHHHhhc-C-----HHH---H----cc--CCE
Confidence 8 76 788899999763 122 1347899999999999999876 1 121 1 12 238
Q ss_pred EEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCC
Q psy14735 235 VIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNS 314 (340)
Q Consensus 235 vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~ 314 (340)
++||+|++|+++++++ +.+++|+ ++++++|||||||+|.|||++++++ |+++++|+++|+++|++++++.|..
T Consensus 206 vvvt~G~~G~~~~~~~--~~~~~~~-~~v~~vDttGAGDaF~agfi~~l~~--g~~~~~a~~~A~a~aa~~v~~~G~~-- 278 (335)
T PLN02630 206 VIVTNGKKGCRIYWKD--GEMRVPP-FPAIQVDPTGAGDSFLGGFVAGLVQ--GLAVPDAALLGNYFGSLAVEQVGIP-- 278 (335)
T ss_pred EEEEECCCceEEEECC--eeEEeCC-CCCCCCCCCChHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCcCCCC--
Confidence 9999999999999876 5788999 8889999999999999999999999 9999999999999999999999852
Q ss_pred CCCccCcchhhhh
Q psy14735 315 FPDKETLPDNLFS 327 (340)
Q Consensus 315 ~~~~~~v~~~l~~ 327 (340)
..+++++++.+.+
T Consensus 279 ~~~~~~l~~~~~~ 291 (335)
T PLN02630 279 KFDLRQLQRVKDE 291 (335)
T ss_pred CCCHHHHHHHhhc
Confidence 3477777777544
No 44
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=5.6e-35 Score=258.46 Aligned_cols=248 Identities=19% Similarity=0.225 Sum_probs=197.0
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
||+++|+.++|++.. ++ .....+||++.|+|.+|++||.++.++|.+|+|..|+ .+.|++ .||++
T Consensus 1 ~il~iG~~~iD~~~~------~~------~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~~l~~-~gv~~ 65 (254)
T cd01937 1 KIVIIGHVTIDEIVT------NG------SGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WSDLFD-NGIEV 65 (254)
T ss_pred CeEEEcceeEEEEec------CC------ceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HHHHHH-CCcEE
Confidence 689999999999863 22 3467899999999999999999999999999999998 688999 99996
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCCc
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRA 175 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~ 175 (340)
..+ . ..+|+.+++.++++|++++....++....... . ..+++++++++++ .+.+....+.+. ..
T Consensus 66 ~~~--~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~ 129 (254)
T cd01937 66 ISL--L-STETTTFELNYTNEGRTRTLLAKCAAIPDTES--P---LSTITAEIVILGP-VPEEISPSLFRK-------FA 129 (254)
T ss_pred EEe--c-CCCeEEEEEEecCCCCeeeeeccccCCccccc--c---cccCcccEEEECC-CcchhcHHHHhh-------hh
Confidence 432 3 34677777777777888777665543322211 1 2367899999865 454544333332 26
Q ss_pred eEEEeCCCCC--CC----CchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec
Q psy14735 176 KIIVNPSPAV--YP----LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR 249 (340)
Q Consensus 176 ~v~~d~~~~~--~~----~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 249 (340)
++++|+++.+ +. ...++++++|++++|++|++.+ .+..++++.+.++|++.++||.|++|++++++
T Consensus 130 ~v~~D~~~~~~~~~~~~~~~~~~l~~~di~~~n~~E~~~~--------~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~ 201 (254)
T cd01937 130 FISLDAQGFLRRANQEKLIKCVILKLHDVLKLSRVEAEVI--------STPTELARLIKETGVKEIIVTDGEEGGYIFDG 201 (254)
T ss_pred heeEccccceeeccccchHHHhhcccCcEEEEcHHHHhhc--------CCHHHHHHHHHHcCCCEEEEeeCCcceEEEEC
Confidence 8899987542 11 1357889999999999999983 34567778888889999999999999999987
Q ss_pred CCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhc
Q psy14735 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLF 307 (340)
Q Consensus 250 ~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~ 307 (340)
+ +.+++|+ ++.+++||+||||+|.|+|++++++ |+++++|+++|+++|+.+|+
T Consensus 202 ~--~~~~~~~-~~~~~vdt~GAGD~f~a~~~~~l~~--g~~~~~a~~~a~~~aa~~i~ 254 (254)
T cd01937 202 N--GKYTIPA-SKKDVVDPTGAGDVFLAAFLYSRLS--GKDIKEAAEFAAAAAAKFIE 254 (254)
T ss_pred C--ccEEccc-cCceeccCCCchHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhC
Confidence 6 5778888 7888999999999999999999999 99999999999999999875
No 45
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.4e-35 Score=264.13 Aligned_cols=264 Identities=18% Similarity=0.221 Sum_probs=203.0
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
.|+++|+.++|++. .+. . .....+||++.|+|.++++|| ++.++|.+|+| +|+.++++|++ .||++
T Consensus 1 ~v~~~G~~~~D~~~------~~~----~-~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~l~~-~gi~~ 66 (277)
T cd01946 1 SLLVVGSVAFDAIE------TPF----G-KVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKLLNS-HNIVT 66 (277)
T ss_pred CeEEEEEeeeeeec------CCC----c-eeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHHHHh-ccCcc
Confidence 48999999999982 111 1 234679999999999999998 69999999999 89999999999 99999
Q ss_pred cceEeeCCCCCceEEEEE--cCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccC
Q psy14735 96 KYIWLLQDVTTGVCSKVI--SNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLES 173 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~--~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~ 173 (340)
+++.+.++.+|....... +.+++++.....+....+++. ++ +.+++++++++++ .+++...++++.+ ++.
T Consensus 67 ~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~v~~~~-~~~~~~~~~~~~~---~~~ 138 (277)
T cd01946 67 LGLLSKEDGKTFHWAGRYHYDLNEADTLDTDLNVFADFDPQ-LP---EHYKDSEFVFLGN-IAPELQREVLEQV---KDP 138 (277)
T ss_pred eeEEEecCCCeEEEeeEehhhcccccchhhhhhHHhhcCCC-Ch---HHhhcCCEEEECC-CCHHHHHHHHHHH---HhC
Confidence 999876655552211110 011222221111111112111 11 2367899999965 5678888899988 766
Q ss_pred CceEEEeCCCCC----CCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEec
Q psy14735 174 RAKIIVNPSPAV----YPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATR 249 (340)
Q Consensus 174 ~~~v~~d~~~~~----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 249 (340)
.++++|+...+ .+.+.++++++|++++|++|++.+++. ++..++++.+++++++.+++|+|.+|++++++
T Consensus 139 -~~v~~D~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~-----~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 212 (277)
T cd01946 139 -KLVVMDTMNFWISIKPEKLKKVLAKVDVVIINDGEARQLTGA-----ANLVKAARLILAMGPKALIIKRGEYGALLFTD 212 (277)
T ss_pred -CEEEEccHHHhhhhhHHHHHHHhccCCEEeCCHHHHHHHhCC-----chHHHHHHHHHHcCCCEEEEecCCCcEEEEEC
Confidence 78999985432 123567889999999999999999885 56778888899999999999999999999887
Q ss_pred CCCceEEEccCCCcC-cccCCCcchHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHHHhcccCCC
Q psy14735 250 DNPRLKTITVDHVEY-PIESEGVGDCFVGALAYYLCYFPQL-----PLGEIILRSCHVARQSLFNVGLQ 312 (340)
Q Consensus 250 ~~~~~~~~p~~~~~~-vvdttGaGDaF~ag~~~~l~~~~g~-----~~~~a~~~a~~~Aa~~~~~~g~~ 312 (340)
+ +.+++|+ ++++ ++||+||||+|.|||++++++ ++ ++++|+++|+++|+++|++.|+.
T Consensus 213 ~--~~~~~~~-~~~~~~vDttGAGDaF~Agfl~~l~~--~~~~~~~~~~~a~~~a~~~aa~~~~~~G~~ 276 (277)
T cd01946 213 D--GYFAAPA-YPLESVFDPTGAGDTFAGGFIGYLAS--QKDTSEANMRRAIIYGSAMASFCVEDFGTK 276 (277)
T ss_pred C--ceEEcCC-cccCccCCCCCchHHHHHHHHHHHHh--CCCcchhhHHHHHHHhHHHHhhhhhhcCCC
Confidence 6 5778888 7764 899999999999999999998 74 68999999999999999999863
No 46
>KOG2854|consensus
Probab=100.00 E-value=7e-35 Score=251.96 Aligned_cols=290 Identities=24% Similarity=0.313 Sum_probs=231.6
Q ss_pred cEEEEcccccceeeecCC-----CC-CCCCee--------------ecCceeeecCChHHHHHHHHHhcCC---ceeEEE
Q psy14735 16 DIVVVGSCLVEFITYVQT-----LP-KPEETV--------------KGYHFEQRFSGKGANQCVAAAKLRA---SVALIS 72 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~-----~~-~~~~~~--------------~~~~~~~~~GG~~~n~a~~l~~lG~---~v~~~~ 72 (340)
-.+.+|++++|+...++. ++ +.+..+ +.......+||++.|+++.+++++. .+.|+|
T Consensus 8 il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~G 87 (343)
T KOG2854|consen 8 ILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFG 87 (343)
T ss_pred eeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEe
Confidence 345579999999998773 21 222222 3346678999999999999999987 899999
Q ss_pred EecCChhhHHHHHHHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHH--HHhhccCCcEEE
Q psy14735 73 KLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDA--AKNLLLKAKVIM 150 (340)
Q Consensus 73 ~vG~D~~g~~i~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~v~ 150 (340)
.+|.|.+|+++.+.+++ .||+..+- +..+.+||+|.++++.++ |++....++...++.+++++ .+..++++.++|
T Consensus 88 svG~Dk~ge~l~~~~~~-aGv~~~yq-~~~d~~TGtCavli~~~n-RSL~anLgAAn~f~~dhl~~~~~~~lveka~v~y 164 (343)
T KOG2854|consen 88 SVGKDKFGELLKSKARA-AGVNVHYQ-VKEDGPTGTCAVLITGDN-RSLCANLGAANCFKVDHLDKEENWALVEKAKVFY 164 (343)
T ss_pred eccCchHHHHHHHHHHh-cCceEEEE-eccCCCCceEEEEEeCCC-cchhhccchhhccCHHHhcchhhhhhhhheeEEE
Confidence 99999999999999999 99999876 456789999999999766 88887788888898888754 446789999999
Q ss_pred EeC---CCCHHHHHHHHHhchhcccCCceEEEeCCCCC-----CCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHH
Q psy14735 151 FQG---ETPWETTLYCLSKLHVSLESRAKIIVNPSPAV-----YPLNPIVMILADIICINEQEAEIITDMKINNEEDLAD 222 (340)
Q Consensus 151 i~~---~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~-----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~ 222 (340)
+.| .+.++++..+.+++ .+.+.+.+.+.+.+. .+.+..+++++|+++.|++|++.+.........+..+
T Consensus 165 v~Gffltv~p~ai~~v~qh~---~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv~e 241 (343)
T KOG2854|consen 165 VAGFFLTVSPDAIRKVAQHA---AENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKDVKE 241 (343)
T ss_pred EEEEEEEeChHHHHHHHHHH---HHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccchHH
Confidence 987 45689999999999 888877788876443 2455678899999999999999987643211233434
Q ss_pred HHHHHHh------cCCCEEEEEecCCceEEEecCCCceEEEccC--CCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHH
Q psy14735 223 CMEKLLD------MKCNTVIITLGGSGVVYATRDNPRLKTITVD--HVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEI 294 (340)
Q Consensus 223 ~~~~l~~------~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~--~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a 294 (340)
.+..+.. ...+++++|.|..+++...++ +...+|.. +..+++||+||||+|++||++++.+ |.++++|
T Consensus 242 ia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~--~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~q--g~~l~~c 317 (343)
T KOG2854|consen 242 IALKLSALPKVNGTRPRTVVITQGPDPVIVAEDG--KVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQ--GKSLEEC 317 (343)
T ss_pred HhhHhhccccccccccceEEEccCCCceEEecCC--ceEEeccccccceeeeeCCCchHHHHHHHHHHHHc--CCCHHHH
Confidence 4333332 246789999999999999886 45555551 2337999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCC
Q psy14735 295 ILRSCHVARQSLFNVGLQNSFPD 317 (340)
Q Consensus 295 ~~~a~~~Aa~~~~~~g~~~~~~~ 317 (340)
++.|+.+|+.+++..|+. +|+
T Consensus 318 ir~g~~aa~~vi~~~G~~--~p~ 338 (343)
T KOG2854|consen 318 IRAGSYAASHVIRRVGCT--VPE 338 (343)
T ss_pred HHHHHHHhhheeeccCCC--CCC
Confidence 999999999999999974 555
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.5e-32 Score=241.02 Aligned_cols=293 Identities=20% Similarity=0.205 Sum_probs=235.2
Q ss_pred CCCCCcEEEEcccccceeee--cCCC-C-CCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHH
Q psy14735 11 LKDEADIVVVGSCLVEFITY--VQTL-P-KPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEE 86 (340)
Q Consensus 11 ~~~~~~I~viG~~~iD~~~~--~~~~-~-~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~ 86 (340)
+.++.+|+|+|+.++|++.+ ++++ | .|-..+++.....++||.+ |||.+++.||.++.++|.+|+|..|+.+.+.
T Consensus 7 ~f~~~kVLVvGDvmLDrY~~G~~~RISPEAPVPVv~v~~e~~rlGGAa-NVa~NiasLGa~a~l~GvvG~Deag~~L~~~ 85 (467)
T COG2870 7 NFKQAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEKEEERLGGAA-NVAKNIASLGANAYLVGVVGKDEAGKALIEL 85 (467)
T ss_pred hhcCCcEEEEcceeeeeeccccccccCCCCCCceEEecccccccccHH-HHHHHHHHcCCCEEEEEeeccchhHHHHHHH
Confidence 34578999999999999988 3333 1 1233677788889999966 9999999999999999999999999999999
Q ss_pred HhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCc--CC-CCCHHHHHHHHhhccCCcEEEEeCCCC--HHHHH
Q psy14735 87 LRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGA--NT-YLSASDIDAAKNLLLKAKVIMFQGETP--WETTL 161 (340)
Q Consensus 87 l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~--~~-~~~~~~i~~~~~~~~~~~~v~i~~~~~--~~~~~ 161 (340)
|.. .+|+..++ ..++.+|.....++. .+++++...-. .+ ......++.+.+.+.+.++++++-.-- ..-..
T Consensus 86 l~~-~~i~~~l~-~~~~r~T~~K~Rv~s--~nQQllRvD~Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~~q 161 (467)
T COG2870 86 LKA-NGIDSDLL-RDKNRPTIVKLRVLS--RNQQLLRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSDYAKGVLTNVQ 161 (467)
T ss_pred HHh-cCcccceE-eecCCCceeeeeeec--ccceEEEecccccCcchhHHHHHHHHHHHhhcCCEEEEeccccccchhHH
Confidence 999 99996655 455788888877766 34444444322 11 222333455666789999999974321 11278
Q ss_pred HHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHh-cCCCEEEEEec
Q psy14735 162 YCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD-MKCNTVIITLG 240 (340)
Q Consensus 162 ~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G 240 (340)
.+++.+ +++++||.+||.+.- .+....+.+++||..|++...|....+ +++.+...+|.+ .....++||++
T Consensus 162 ~~I~~a---r~~~~pVLvDPKg~D----f~~Y~GAtLiTPN~~E~~~~vg~~~~e-~el~~~g~kL~~~~~L~alLvTRs 233 (467)
T COG2870 162 KMIDLA---REAGIPVLVDPKGKD----FEKYRGATLITPNLKEFEEAVGKCKSE-EELEERGQKLKEELDLSALLVTRS 233 (467)
T ss_pred HHHHHH---HHcCCcEEECCCCcc----hhhhCCCeecCCCHHHHHHHHcccccH-HHHHHHHHHHHHhhCcceEEEEec
Confidence 899999 999999999998863 366788999999999999999875444 667777777775 68899999999
Q ss_pred CCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccC
Q psy14735 241 GSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKET 320 (340)
Q Consensus 241 ~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~ 320 (340)
++|..+++.+ +..|+|+ ...++.|.|||||+-.|.|.++++. |.++++|+.+||++|+.++...|+.. .+.++
T Consensus 234 E~GMtL~~~~--~~~h~pt-~AkEVyDVTGAGDTVIa~la~~laa--G~s~~eAc~lAN~AagiVVgKlGTat--vs~~E 306 (467)
T COG2870 234 EKGMTLFQEG--KPLHFPA-RAKEVYDVTGAGDTVIAVLAAALAA--GASLEEACELANAAAGIVVGKLGTAT--VSPEE 306 (467)
T ss_pred cCCceeecCC--cccccch-hheeeeeccCCCchHHHHHHHHHHc--CCCHHHHHHHhhhhcceEEeecccee--ecHHH
Confidence 9999999987 5689999 8889999999999999999999999 99999999999999999999999753 45555
Q ss_pred cch
Q psy14735 321 LPD 323 (340)
Q Consensus 321 v~~ 323 (340)
+..
T Consensus 307 L~n 309 (467)
T COG2870 307 LEM 309 (467)
T ss_pred HHh
Confidence 554
No 48
>KOG2947|consensus
Probab=99.97 E-value=8.8e-30 Score=210.08 Aligned_cols=284 Identities=18% Similarity=0.222 Sum_probs=230.3
Q ss_pred CCcEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCC
Q psy14735 14 EADIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSI 93 (340)
Q Consensus 14 ~~~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi 93 (340)
++.|+++|.+.+|++..+++.|.++...+..+...+-||.+.|++.+|..||.++.|+|.+.....-+.+++.|++ .||
T Consensus 4 ~k~VLcVG~~~lD~iTivd~~~fe~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lLddl~~-rgI 82 (308)
T KOG2947|consen 4 PKQVLCVGCTVLDVITIVDKYPFEDSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLLDDLRR-RGI 82 (308)
T ss_pred cceEEEeccEEEEEEEeccCCCCCccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHHHHHHHh-cCC
Confidence 4789999999999999999999999999998999999999999999999999999999999988888999999999 999
Q ss_pred cccceEeeCCCCCceEEEEEc-CCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcc-
Q psy14735 94 NTKYIWLLQDVTTGVCSKVIS-NKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSL- 171 (340)
Q Consensus 94 ~~~~v~~~~~~~t~~~~i~~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~- 171 (340)
|+++...... ..+...++++ ..|.|+++....+.+.++.++..+.. +.++.|+++.+.-+.|.+..+....+-|.
T Consensus 83 dishcpftd~-~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~kvd--l~qy~WihfE~Rnp~etlkM~~~I~~~N~r 159 (308)
T KOG2947|consen 83 DISHCPFTDH-SPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEKVD--LTQYGWIHFEARNPSETLKMLQRIDAHNTR 159 (308)
T ss_pred CcccCccccC-CCCcceEEEecCCCceEEEEecCCCccccHHHhhhcc--cceeeeEEEecCChHHHHHHHHHHHHhhcC
Confidence 9999866544 4555555565 57888998888888999999988653 78999999999888887655544431001
Q ss_pred ---cCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhc----CCC-EEEEEecCCc
Q psy14735 172 ---ESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDM----KCN-TVIITLGGSG 243 (340)
Q Consensus 172 ---~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~----g~~-~vvvt~G~~G 243 (340)
+.++.+.+|.... ++....+...+|+++...+-++.+ |. ....++.+.|..+ +.| .+|+..++.|
T Consensus 160 ~pe~qrI~vSvd~en~-req~~~l~am~DyVf~sK~~a~~~-gf-----ks~rea~~~l~~r~~~~~pkpv~I~~w~~eG 232 (308)
T KOG2947|consen 160 QPEEQRIRVSVDVENP-REQLFQLFAMCDYVFVSKDVAKHL-GF-----KSPREACEGLYGRVPKGKPKPVLICPWASEG 232 (308)
T ss_pred CCccceEEEEEEecCc-HHHHHHHhhcccEEEEEHHHHhhh-cc-----CCHHHHHHHHHhhcccCCCCcEEEecccccc
Confidence 1334566776543 335568889999999999988886 43 3455555555542 333 5778889999
Q ss_pred eEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccC
Q psy14735 244 VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVG 310 (340)
Q Consensus 244 ~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g 310 (340)
+-....++ +.+++++.+|-++||+.|+||+|.||++|++++. +.++.+|+.||+++|+.++...|
T Consensus 233 A~~l~adg-~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~-~r~l~eAvdfg~rvas~Kl~g~G 297 (308)
T KOG2947|consen 233 AGALGADG-KYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQ-GRSLAEAVDFGNRVASKKLGGQG 297 (308)
T ss_pred ccccCCCC-CEEecCCCCCccceeeccCCCcchHHHHHHHHHh-hhhHHHHHHHHHHhhhccccccc
Confidence 87776665 7999999556799999999999999999996553 89999999999999999999876
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.97 E-value=8.5e-30 Score=216.32 Aligned_cols=190 Identities=32% Similarity=0.422 Sum_probs=168.7
Q ss_pred cEEEEcccccceeeecCCCCCCCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPKPEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
+|+++|++.+|.++.++.+|.+++.++....+..+||.|.|+|.+|++||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------------------- 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVDALPLPGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------------------- 57 (196)
T ss_pred CEEEEccceEEEEEEeccCCCCCCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE-----------------------
Confidence 589999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCH-HHHHHHHHhchhcccCC
Q psy14735 96 KYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPW-ETTLYCLSKLHVSLESR 174 (340)
Q Consensus 96 ~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~-~~~~~~~~~a~~~~~~~ 174 (340)
++++++++..+. +...++++.+ ++.+
T Consensus 58 --------------------------------------------------~~~v~i~~~~~~~~~~~~~~~~~---~~~~ 84 (196)
T cd00287 58 --------------------------------------------------ADAVVISGLSPAPEAVLDALEEA---RRRG 84 (196)
T ss_pred --------------------------------------------------ccEEEEecccCcHHHHHHHHHHH---HHcC
Confidence 689999987775 7788899999 8889
Q ss_pred ceEEEeCCCCCCCC----chhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEe-c
Q psy14735 175 AKIIVNPSPAVYPL----NPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYAT-R 249 (340)
Q Consensus 175 ~~v~~d~~~~~~~~----~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~-~ 249 (340)
.++++|+.+..... +.++++++|++++|++|++.+++....+.++..+.++.+.+++++.+++|+|++|+++++ +
T Consensus 85 ~~v~~D~~~~~~~~~~~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~ 164 (196)
T cd00287 85 VPVVLDPGPRAVRLDGEELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALLLSKGPKVVIVTLGEKGAIVATRG 164 (196)
T ss_pred CeEEEeCCccccccccchHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHHHhcCCCEEEEEECCCccEEEecC
Confidence 99999998654211 346889999999999999999997666666777888889999999999999999999998 5
Q ss_pred CCCceEEEccCCCcCcccCCCcchHHHHHHHHHHH
Q psy14735 250 DNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLC 284 (340)
Q Consensus 250 ~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~ 284 (340)
+ ..+++|+ ++.+++||+||||+|.|||++++.
T Consensus 165 ~--~~~~~~~-~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 165 G--TEVHVPA-FPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred C--ceEEcCC-ccCCcccCCCchHHHHHHHHHHhC
Confidence 4 6788888 778899999999999999999873
No 50
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.83 E-value=5.9e-19 Score=156.86 Aligned_cols=170 Identities=16% Similarity=0.149 Sum_probs=137.6
Q ss_pred CHHHHHHHH-hhccC--CcEEEEeCCCCHHHHHHHHHhchhcccCCce-EEEeCCCCC-------C-----CCchhhhhc
Q psy14735 132 SASDIDAAK-NLLLK--AKVIMFQGETPWETTLYCLSKLHVSLESRAK-IIVNPSPAV-------Y-----PLNPIVMIL 195 (340)
Q Consensus 132 ~~~~i~~~~-~~~~~--~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~-v~~d~~~~~-------~-----~~~~~~l~~ 195 (340)
+++.++... ..+++ .+++.++...+.+....+++.+ ++.+.+ +++||.... . .....+++.
T Consensus 56 ~~~~i~~q~~~l~~d~~~~~ikiG~l~~~~~v~~i~~~~---~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~ 132 (268)
T PRK12412 56 PASTLKPQLETTIEGVGVDALKTGMLGSVEIIEMVAETI---EKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPK 132 (268)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHHH---HhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhcc
Confidence 445554432 23444 7899998877889999999999 777776 899996321 1 113357899
Q ss_pred CcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCce------EEEecCCCceEEEccCCCcCcccCC
Q psy14735 196 ADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGV------VYATRDNPRLKTITVDHVEYPIESE 269 (340)
Q Consensus 196 ~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~------~~~~~~~~~~~~~p~~~~~~vvdtt 269 (340)
+|++++|+.|++.|+|.++.+.+++.++++.|+++|++.|+||.|+.|. +++..+ ..+++|. ++++.+|++
T Consensus 133 advitpN~~Ea~~L~g~~~~~~~~~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~--~~~~~~~-~~v~~~~t~ 209 (268)
T PRK12412 133 ALVVTPNLFEAYQLSGVKINSLEDMKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGE--TFDLLES-EKIDTTNTH 209 (268)
T ss_pred ceEEcCCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCC--EEEEEEe-CccCCCCCC
Confidence 9999999999999999877777889999999999999999999998753 344443 4567888 788899999
Q ss_pred CcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhccc
Q psy14735 270 GVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNV 309 (340)
Q Consensus 270 GaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~ 309 (340)
|+||+|.|+|++++++ |+++++|+++|..+....++..
T Consensus 210 GaGD~f~aa~aa~l~~--g~~l~eA~~~A~~~~~~~i~~~ 247 (268)
T PRK12412 210 GAGCTYSAAITAELAK--GKPVKEAVKTAKEFITAAIRYS 247 (268)
T ss_pred chHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999888763
No 51
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.82 E-value=8.7e-19 Score=154.73 Aligned_cols=171 Identities=20% Similarity=0.196 Sum_probs=137.6
Q ss_pred CCHHHHHHHHhh-cc--CCcEEEEeCCCCHHHHHHHHHhchhcccCCc-eEEEeCCCC------CCC------Cchhhhh
Q psy14735 131 LSASDIDAAKNL-LL--KAKVIMFQGETPWETTLYCLSKLHVSLESRA-KIIVNPSPA------VYP------LNPIVMI 194 (340)
Q Consensus 131 ~~~~~i~~~~~~-~~--~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~-~v~~d~~~~------~~~------~~~~~l~ 194 (340)
++++.+....+. ++ +.+++.+..-.+.+....+++.+ ++++. ++++||... +++ ....+++
T Consensus 50 ~~~~~~~~q~~~~~~d~~~~aikiG~l~~~~~~~~i~~~~---~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~ 126 (254)
T TIGR00097 50 IPPDFVEAQLDAVFSDIPVDAAKTGMLASAEIVEAVARKL---REYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLP 126 (254)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHHH---HhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccc
Confidence 445555443322 33 46888887777789999999999 88888 699998532 111 1234678
Q ss_pred cCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecC----Cce-EEEecCCCceEEEccCCCcCcccCC
Q psy14735 195 LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGG----SGV-VYATRDNPRLKTITVDHVEYPIESE 269 (340)
Q Consensus 195 ~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~----~G~-~~~~~~~~~~~~~p~~~~~~vvdtt 269 (340)
++|++++|..|++.|++.+..+.++..++++.|.++|++.|+||.|+ +|. ++++++ +.++++. ++++.+|++
T Consensus 127 ~~dvitpN~~Ea~~L~g~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~d~~ 203 (254)
T TIGR00097 127 LATLITPNLPEAEALLGTKIRTEQDMIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGG--EIHILKA-PRIETKNTH 203 (254)
T ss_pred cccEecCCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECC--eEEEEEe-cccCCCCCC
Confidence 99999999999999999877777788899999999999999999997 344 556655 5677888 788899999
Q ss_pred CcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhccc
Q psy14735 270 GVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNV 309 (340)
Q Consensus 270 GaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~ 309 (340)
|+||+|.|+|++++++ |+++++|+++|..++...++..
T Consensus 204 GaGD~f~aalaa~la~--g~~l~eA~~~A~~~~~~~i~~~ 241 (254)
T TIGR00097 204 GTGCTLSAAIAANLAK--GLSLKEAVKEAKEFVTGAIRYG 241 (254)
T ss_pred ChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 9999999999999999998763
No 52
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.81 E-value=1.1e-18 Score=154.16 Aligned_cols=172 Identities=23% Similarity=0.228 Sum_probs=130.1
Q ss_pred CCCCHHHHHHHHhhc------cCCcEEEEeCCCC---HHHHHHHHHhchhcccC--CceEEEeCC----CCCC-------
Q psy14735 129 TYLSASDIDAAKNLL------LKAKVIMFQGETP---WETTLYCLSKLHVSLES--RAKIIVNPS----PAVY------- 186 (340)
Q Consensus 129 ~~~~~~~i~~~~~~~------~~~~~v~i~~~~~---~~~~~~~~~~a~~~~~~--~~~v~~d~~----~~~~------- 186 (340)
..+++++++.+.+.+ ..++++.+....+ .+.+.++++.+ +++ +.++++||. +..|
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~---~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~ 126 (254)
T cd01173 50 FVLSAEELEDLLEGLEALGLLLEYDAVLTGYLGSAEQVEAVAEIVKRL---KEKNPNLLYVCDPVMGDNGKLYVVAEEIV 126 (254)
T ss_pred eecCHHHHHHHHHHHHHcCCcccCCEEEEecCCCHHHHHHHHHHHHHH---HHhCCCceEEECCCCCcCCcceecChhHH
Confidence 456667666543322 4567775443223 35566677776 665 889999984 2222
Q ss_pred CCchhhhh-cCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCC------ceEEEecCCCceEEEcc
Q psy14735 187 PLNPIVMI-LADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS------GVVYATRDNPRLKTITV 259 (340)
Q Consensus 187 ~~~~~~l~-~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~------G~~~~~~~~~~~~~~p~ 259 (340)
+.+.+++. ++|++++|..|++.++|.+..+.++..++++.|.++|++.|+||.|+. |+++++++ +.++++.
T Consensus 127 ~~~~~~l~~~~dvi~pN~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~--~~~~~~~ 204 (254)
T cd01173 127 PVYRDLLVPLADIITPNQFELELLTGKKINDLEDAKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTAT--EAWLVQR 204 (254)
T ss_pred HHHHHHHHhcCCEECCcHHHHHHHcCCCcCCHHHHHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecC--ccEEEEe
Confidence 12335555 999999999999999998877778899999999999999999999985 78877765 3444444
Q ss_pred CCCcC-cccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcc
Q psy14735 260 DHVEY-PIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 260 ~~~~~-vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~ 308 (340)
+..+ ++|++|+||+|.|+|++++++ |+++++|+++|+.+....++.
T Consensus 205 -~~~~~~~~~~GaGD~f~a~~~~~l~~--g~~~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 205 -PKIPFPAYFNGTGDLFAALLLARLLK--GKSLAEALEKALNFVHEVLEA 251 (254)
T ss_pred -eccCCCCCcCChHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 4444 699999999999999999999 999999999999998877654
No 53
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.80 E-value=1.2e-17 Score=147.39 Aligned_cols=217 Identities=18% Similarity=0.214 Sum_probs=148.6
Q ss_pred eeEEEEecCChhhHH-HHHHHhhh--cCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhcc
Q psy14735 68 VALISKLGNDKFGKS-YLEELRKY--NSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLL 144 (340)
Q Consensus 68 v~~~~~vG~D~~g~~-i~~~l~~~--~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~ 144 (340)
+..++.-|.|..|.. +...++-. +|+ .+..+.++....+..|. .+. . ...+.+....+.+.
T Consensus 4 ~~vl~iag~d~~ggaG~~aD~~~~~~~~~--------~~~~~~t~~t~~~~~G~-~v~--~-----~~~~~l~~~l~~l~ 67 (253)
T PRK12413 4 NYILAISGNDIFSGGGLHADLATYTRNGL--------HGFVAVTCLTAMTEKGF-EVF--P-----VDKEIFQQQLDSLK 67 (253)
T ss_pred CeEEEEeeeCCCCHHHHHHHHHHHHHcCC--------ccCeeeEEEecccCCce-EEE--E-----CCHHHHHHHHHHhh
Confidence 456777787766554 44444430 222 23445555555565663 221 1 22333333222234
Q ss_pred CCcEEEEe-CCC-CHHHHHHHHHhchhcc-cCCceEEEeCCCC--CC---------CCchhhhhcCcEEEeCHHHHHHhh
Q psy14735 145 KAKVIMFQ-GET-PWETTLYCLSKLHVSL-ESRAKIIVNPSPA--VY---------PLNPIVMILADIICINEQEAEIIT 210 (340)
Q Consensus 145 ~~~~v~i~-~~~-~~~~~~~~~~~a~~~~-~~~~~v~~d~~~~--~~---------~~~~~~l~~~dil~~n~~E~~~l~ 210 (340)
..++..+. |.. +.+....+++.+ + ..+.++++||... .| +.+..+++.+|++++|+.|++.|+
T Consensus 68 ~~~~~~i~~G~l~~~~~~~~~~~~~---~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~ 144 (253)
T PRK12413 68 DVPFSAIKIGLLPNVEIAEQALDFI---KGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLS 144 (253)
T ss_pred CCCCCEEEECCcCCHHHHHHHHHHH---HhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHh
Confidence 44454443 544 456677777777 5 4688999998532 22 123356888999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCCCEEEEEecCCc-----e-EEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHH
Q psy14735 211 DMKINNEEDLADCMEKLLDMKCNTVIITLGGSG-----V-VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLC 284 (340)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G-----~-~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~ 284 (340)
|.+..+.++..++++.++++|++.|+||.|++| . +++++ +..+.+. ++...+|++||||+|.|+|+++++
T Consensus 145 g~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~GaGDaf~a~~~~~l~ 220 (253)
T PRK12413 145 GKEIKTLEDMKEAAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYDG---KEFVILE-SPVLEKNNIGAGCTFASSIASQLV 220 (253)
T ss_pred CcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcceEEEEcC---CEEEEEe-ecccCCCCCChHHHHHHHHHHHHH
Confidence 987777788889999999999999999999864 2 34433 2344555 556778999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhccc
Q psy14735 285 YFPQLPLGEIILRSCHVARQSLFNV 309 (340)
Q Consensus 285 ~~~g~~~~~a~~~a~~~Aa~~~~~~ 309 (340)
+ |+++++|+++|..+...++++.
T Consensus 221 ~--g~~l~ea~~~A~~~~~~~l~~~ 243 (253)
T PRK12413 221 K--GKSPLEAVKNSKDFVYQAIQQS 243 (253)
T ss_pred c--CCCHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999998888764
No 54
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.80 E-value=4e-18 Score=149.54 Aligned_cols=156 Identities=21% Similarity=0.222 Sum_probs=127.7
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhchhcccC-CceEEEeCCCCC------C------CCchhhhhcCcEEEeCHHHHHHhhc
Q psy14735 145 KAKVIMFQGETPWETTLYCLSKLHVSLES-RAKIIVNPSPAV------Y------PLNPIVMILADIICINEQEAEIITD 211 (340)
Q Consensus 145 ~~~~v~i~~~~~~~~~~~~~~~a~~~~~~-~~~v~~d~~~~~------~------~~~~~~l~~~dil~~n~~E~~~l~~ 211 (340)
+++++.+..-.+.+....+.+.+ ++. +.++++||.... + .....+++.+|++++|..|++.|+|
T Consensus 68 ~~~~i~~G~l~~~~~~~~i~~~~---~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 144 (242)
T cd01169 68 PVDAIKIGMLGSAEIIEAVAEAL---KDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTG 144 (242)
T ss_pred CCCEEEECCCCCHHHHHHHHHHH---HhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhC
Confidence 57888885555688888888888 665 789999985321 1 1223456899999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhcCCCEEEEEecCCc-----eEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcC
Q psy14735 212 MKINNEEDLADCMEKLLDMKCNTVIITLGGSG-----VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYF 286 (340)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G-----~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~ 286 (340)
.+..+.++..++++.+.++|++.|+||.|+.| .++++++ +.++++. ++.+++|++|+||+|.|+|++++++
T Consensus 145 ~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~GaGD~f~a~l~a~l~~- 220 (242)
T cd01169 145 LEIATEEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDGG--GFFEFES-PRIDTKNTHGTGCTLSSAIAANLAK- 220 (242)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEECC--cEEEEec-ceeCCCCCCChHHHHHHHHHHHHHC-
Confidence 87766667778889999999999999999875 3566654 5678888 7778899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcc
Q psy14735 287 PQLPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 287 ~g~~~~~a~~~a~~~Aa~~~~~ 308 (340)
|+++++|+++|+.+-...++.
T Consensus 221 -g~~~~~A~~~A~~~~~~~i~~ 241 (242)
T cd01169 221 -GLSLEEAVREAKEYVTQAIRN 241 (242)
T ss_pred -CCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999988877653
No 55
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.79 E-value=7.3e-18 Score=150.01 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=127.8
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhchhcccCCc-eEEEeCCC------CCCC------CchhhhhcCcEEEeCHHHHHHhhc
Q psy14735 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRA-KIIVNPSP------AVYP------LNPIVMILADIICINEQEAEIITD 211 (340)
Q Consensus 145 ~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~-~v~~d~~~------~~~~------~~~~~l~~~dil~~n~~E~~~l~~ 211 (340)
+.+.+.+..-.+.+....+++.+ ++.+. ++++||.- ..+. ....+++.+|++++|..|++.|+|
T Consensus 73 ~~~ai~iG~l~~~~~~~~i~~~~---~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 149 (266)
T PRK06427 73 RIDAVKIGMLASAEIIETVAEAL---KRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTG 149 (266)
T ss_pred CCCEEEECCcCCHHHHHHHHHHH---HhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhC
Confidence 57888887655678888888888 77665 79999852 1111 223478889999999999999999
Q ss_pred CCCCChhh-HHHHHHHHHhcCCCEEEEEecC--Cce----EEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHH
Q psy14735 212 MKINNEED-LADCMEKLLDMKCNTVIITLGG--SGV----VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLC 284 (340)
Q Consensus 212 ~~~~~~~~-~~~~~~~l~~~g~~~vvvt~G~--~G~----~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~ 284 (340)
.++.+.++ ..++++.+.++|++.|+||.|+ +|. ++++++ +.++++. ++++.+|++|+||+|.|+|+++++
T Consensus 150 ~~~~~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~--~~~~~~~-~~~~~~~~~GaGD~f~a~l~~~l~ 226 (266)
T PRK06427 150 LPIADTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGE--GEERFSA-PRIPTKNTHGTGCTLSAAIAAELA 226 (266)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCC--cEEEEEe-eeECCCCCCChHHHHHHHHHHHHH
Confidence 76655444 7889999999999999999998 553 566655 4667888 777888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhccc
Q psy14735 285 YFPQLPLGEIILRSCHVARQSLFNV 309 (340)
Q Consensus 285 ~~~g~~~~~a~~~a~~~Aa~~~~~~ 309 (340)
+ |+++++|+++|+.+++.++++.
T Consensus 227 ~--g~~l~~A~~~A~~~~~~~i~~~ 249 (266)
T PRK06427 227 K--GASLLDAVQTAKDYVTRAIRHA 249 (266)
T ss_pred C--CCCHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999998874
No 56
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.78 E-value=3.8e-18 Score=153.35 Aligned_cols=171 Identities=20% Similarity=0.267 Sum_probs=126.2
Q ss_pred CCCCHHHHHHHHhh------ccCCcEEEEeCCCC-H---HHHHHHHHhchhcccCC--ceEEEeCC-----CCCC--C--
Q psy14735 129 TYLSASDIDAAKNL------LLKAKVIMFQGETP-W---ETTLYCLSKLHVSLESR--AKIIVNPS-----PAVY--P-- 187 (340)
Q Consensus 129 ~~~~~~~i~~~~~~------~~~~~~v~i~~~~~-~---~~~~~~~~~a~~~~~~~--~~v~~d~~-----~~~~--~-- 187 (340)
..+++++++.+.+. +++++++ +.|..+ . +.+.++++.+ ++.+ .++++||. ...+ +
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~d~v-~~G~l~~~~~~~~~~~~l~~~---~~~~~~~~vv~Dpv~~d~~~~~~~~~~~ 127 (286)
T TIGR00687 52 QVLPPDELTELVDGLAAINKLNQCDAV-LSGYLGSAEQVAMVVGIVRQV---KQANPQALYVCDPVMGDPEKGCYVAPDL 127 (286)
T ss_pred eECCHHHHHHHHHHHHhcCccccCCEE-EECCCCCHHHHHHHHHHHHHH---HHhCCCCcEEECCeeeeCCCCeeeChhH
Confidence 45666666554443 3478887 445553 3 3566677766 6554 56788983 1111 1
Q ss_pred ---CchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEE-ecCCce--------EEEecCCCceE
Q psy14735 188 ---LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT-LGGSGV--------VYATRDNPRLK 255 (340)
Q Consensus 188 ---~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt-~G~~G~--------~~~~~~~~~~~ 255 (340)
....+++++|++++|..|++.|+|.+..+.++..++++.++++|++.++|| .|.+|+ ++++++ +.+
T Consensus 128 ~~~~~~~ll~~adii~pN~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~--~~~ 205 (286)
T TIGR00687 128 LEVYREKAIPVADIITPNQFELELLTGRKINTVEEALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQE--GRW 205 (286)
T ss_pred HHHHHHhccccccEecCCHHHHHHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcCC--ceE
Confidence 112466889999999999999999877777788889999999999999999 687775 344444 466
Q ss_pred EEccCCCcC-cccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcc
Q psy14735 256 TITVDHVEY-PIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 256 ~~p~~~~~~-vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~ 308 (340)
+.+. +..+ ++|++||||+|.|+|++++++ |+++++|+++|+++...++..
T Consensus 206 ~~~~-~~~~~~~d~~GaGD~f~A~~l~~l~~--g~~~~~al~~A~~~v~~~l~~ 256 (286)
T TIGR00687 206 HISR-PLAVFMRQPVGTGDLIAALLLATLLH--GNSLKEALEKTVSAVYHVLVT 256 (286)
T ss_pred EEec-cCcCCCCCCCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHH
Confidence 6766 5566 689999999999999999999 999999999999995555443
No 57
>PRK05756 pyridoxamine kinase; Validated
Probab=99.78 E-value=9.9e-18 Score=150.59 Aligned_cols=172 Identities=17% Similarity=0.124 Sum_probs=129.4
Q ss_pred CCCCHHHHHHHHhh------ccCCcEEEEeCCCC----HHHHHHHHHhchhcccCC--ceEEEeCCCC-----CC-----
Q psy14735 129 TYLSASDIDAAKNL------LLKAKVIMFQGETP----WETTLYCLSKLHVSLESR--AKIIVNPSPA-----VY----- 186 (340)
Q Consensus 129 ~~~~~~~i~~~~~~------~~~~~~v~i~~~~~----~~~~~~~~~~a~~~~~~~--~~v~~d~~~~-----~~----- 186 (340)
..+++++++.+.+. +..++++ +.|.++ .+.+.++++.+ ++.+ ..+++||.-. .+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~v-~~G~l~~~~~~~~v~~~i~~~---k~~~~~~~~v~DPv~~d~~~~~~~~~~~ 127 (286)
T PRK05756 52 CVMPPSHLTEIVQGIADIGWLGECDAV-LSGYLGSAEQGEAILDAVRRV---KAANPQALYFCDPVMGDPEKGCIVAPGV 127 (286)
T ss_pred eeCCHHHHHHHHHHHHhcCccccCCEE-EECCCCCHHHHHHHHHHHHHH---HHhCCCceEEECCccccCCCCEEECccH
Confidence 34555666654322 3467866 455543 34456666665 5554 4577886411 11
Q ss_pred --CCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCC--------ceEEEecCCCceEE
Q psy14735 187 --PLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS--------GVVYATRDNPRLKT 256 (340)
Q Consensus 187 --~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~--------G~~~~~~~~~~~~~ 256 (340)
.....+++++|++++|..|++.|++.+..+.++..++++.++++|++.|+||.|+. |+++++.+ ..++
T Consensus 128 ~~~~~~~ll~~adiitpN~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~--~~~~ 205 (286)
T PRK05756 128 AEFLRDRALPAADIITPNLFELEWLSGRPVETLEDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTAD--GAWH 205 (286)
T ss_pred hHHHHHhhcccccEecCCHHHHHHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECC--ceEE
Confidence 12224788999999999999999998777777888999999999999999999876 47777765 4667
Q ss_pred EccCCCcCc-ccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhccc
Q psy14735 257 ITVDHVEYP-IESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNV 309 (340)
Q Consensus 257 ~p~~~~~~v-vdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~ 309 (340)
++. +.+++ +|++||||+|.|+|++++++ |+++++|+++|+.....+++..
T Consensus 206 ~~~-~~~~~~v~~~GaGD~f~a~~~a~l~~--g~~~~~al~~A~~~~~~~i~~~ 256 (286)
T PRK05756 206 ISR-PLVDFMRQPVGVGDLTSALFLARLLQ--GGSLEEALEHTTAAVYEVMART 256 (286)
T ss_pred Eec-CccCCCCCCCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH
Confidence 777 66777 79999999999999999999 9999999999999999888763
No 58
>PRK07105 pyridoxamine kinase; Validated
Probab=99.78 E-value=1.3e-17 Score=149.60 Aligned_cols=163 Identities=21% Similarity=0.173 Sum_probs=125.0
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeCCCC----CCC--------CchhhhhcCcEEEeCHHHHHHhhcC
Q psy14735 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPA----VYP--------LNPIVMILADIICINEQEAEIITDM 212 (340)
Q Consensus 145 ~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~----~~~--------~~~~~l~~~dil~~n~~E~~~l~~~ 212 (340)
++++|.++.-.+.+....+.+.++..++.+.++++||... +|. .+.++++.+|++++|+.|++.|+|.
T Consensus 75 ~~~aik~G~l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~ 154 (284)
T PRK07105 75 KFDAIYSGYLGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLLDK 154 (284)
T ss_pred ccCEEEECcCCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHcCC
Confidence 6788888655565555444444411155678899999632 121 2346899999999999999999997
Q ss_pred CCC----ChhhHHHHHHHHHhcCCCEEEEEe-----cCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHH
Q psy14735 213 KIN----NEEDLADCMEKLLDMKCNTVIITL-----GGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYL 283 (340)
Q Consensus 213 ~~~----~~~~~~~~~~~l~~~g~~~vvvt~-----G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l 283 (340)
++. +.+++.++++.+.++|++.|+||. |..|++++++++...++.+. +... +|++||||+|.|+|++++
T Consensus 155 ~~~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~-~~~~-~~~~GaGD~f~aa~~~~l 232 (284)
T PRK07105 155 PYLEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFC-KYIP-AHYPGTGDIFTSVITGSL 232 (284)
T ss_pred CcCcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEee-cccC-CCcCChhHHHHHHHHHHH
Confidence 643 466788889999989999999999 66788888754223555655 4444 799999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHhcccCC
Q psy14735 284 CYFPQLPLGEIILRSCHVARQSLFNVGL 311 (340)
Q Consensus 284 ~~~~g~~~~~a~~~a~~~Aa~~~~~~g~ 311 (340)
++ |+++++|+++|..++...++....
T Consensus 233 ~~--g~~l~~av~~A~~~~~~~i~~~~~ 258 (284)
T PRK07105 233 LQ--GDSLPIALDRAVQFIEKGIRATLG 258 (284)
T ss_pred hC--CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99 999999999999999999886543
No 59
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.77 E-value=4.1e-17 Score=154.85 Aligned_cols=171 Identities=19% Similarity=0.162 Sum_probs=134.8
Q ss_pred CCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeCCC------CCCC------CchhhhhcC
Q psy14735 129 TYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSP------AVYP------LNPIVMILA 196 (340)
Q Consensus 129 ~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~------~~~~------~~~~~l~~~ 196 (340)
..+..++++.+++.+. .+.+.++...+.+....+++.+ ++++.++++||.. .++. ....+++.+
T Consensus 56 ~~~~~~q~~a~~~d~~-~~~ik~G~l~~~e~~~~i~~~~---k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~a 131 (448)
T PRK08573 56 PEVVAAQIEAVWEDMG-IDAAKTGMLSNREIIEAVAKTV---SKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLA 131 (448)
T ss_pred HHHHHHHHHHHHhcCC-CCEEEECCcCCHHHHHHHHHHH---HHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccC
Confidence 3444455555544333 3556555444678899999999 8889999999842 2221 124577899
Q ss_pred cEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHh-cCCCEEEEEecC----Cce-EEEecCCCceEEEccCCCcCcccCCC
Q psy14735 197 DIICINEQEAEIITDMKINNEEDLADCMEKLLD-MKCNTVIITLGG----SGV-VYATRDNPRLKTITVDHVEYPIESEG 270 (340)
Q Consensus 197 dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~----~G~-~~~~~~~~~~~~~p~~~~~~vvdttG 270 (340)
|++++|..|++.|+|.++.+.++..++++.|.+ +|++.|+||.|+ +|+ +++..+ ..++++. ++++++|++|
T Consensus 132 dli~pN~~Ea~~L~g~~i~~~~d~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~--~~~~~~~-~~v~~~dt~G 208 (448)
T PRK08573 132 TVVTPNRPEAEKLTGMKIRSVEDARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHNG--TFREFRA-PRVESGCTHG 208 (448)
T ss_pred EEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEECC--eEEEEEe-cCcCCCCCCC
Confidence 999999999999999887777888899999985 799999999985 354 444544 5677888 7888999999
Q ss_pred cchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcc
Q psy14735 271 VGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 271 aGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~ 308 (340)
|||+|.|+|++++++ |+++++|+++|+.+....++.
T Consensus 209 AGDaFsAa~aa~l~~--G~~l~eAl~~A~~~~~~al~~ 244 (448)
T PRK08573 209 TGCSFSAAIAAGLAK--GLDPEEAIKTAKKFITMAIKY 244 (448)
T ss_pred hHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999883
No 60
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.77 E-value=3.7e-17 Score=146.19 Aligned_cols=159 Identities=19% Similarity=0.135 Sum_probs=122.7
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHhchhccc--CCceEEEeCCCC-----CC------CCc-hhhhhcCcEEEeCHHHHHHh
Q psy14735 144 LKAKVIMFQGETPWETTLYCLSKLHVSLE--SRAKIIVNPSPA-----VY------PLN-PIVMILADIICINEQEAEII 209 (340)
Q Consensus 144 ~~~~~v~i~~~~~~~~~~~~~~~a~~~~~--~~~~v~~d~~~~-----~~------~~~-~~~l~~~dil~~n~~E~~~l 209 (340)
.++++++++.-.+.+....+.+.+++.+. .+.++++||.-. .+ +.+ ..+++.+|++++|..|++.|
T Consensus 87 ~~~d~i~~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L 166 (281)
T PRK08176 87 RQLRAVTTGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEIL 166 (281)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHH
Confidence 47899998766566655555555511122 467899999511 11 112 35889999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCc-------eEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHH
Q psy14735 210 TDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG-------VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYY 282 (340)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G-------~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~ 282 (340)
+|.++.+.++..++++.|+++|++.|+||.|+.| +++++++ ..+..+. +...+|++|+||+|.|+|+++
T Consensus 167 ~g~~~~~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~GaGD~faa~~~a~ 242 (281)
T PRK08176 167 TGKPCRTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTAD--SVNVISH--PRVDTDLKGTGDLFCAELVSG 242 (281)
T ss_pred hCCCCCCHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCC--ceEEEec--CccCCCCCChhHHHHHHHHHH
Confidence 9987777778889999999999999999999988 5666655 3433333 344579999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHhcc
Q psy14735 283 LCYFPQLPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 283 l~~~~g~~~~~a~~~a~~~Aa~~~~~ 308 (340)
+++ |+++++|+++|...-...++.
T Consensus 243 l~~--g~~l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 243 LLK--GKALTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred Hhc--CCCHHHHHHHHHHHHHHHHHH
Confidence 999 999999999999988877765
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.76 E-value=3.6e-17 Score=145.52 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=128.2
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhchhcccCC-ceEEEeCCCCC-------C----C-CchhhhhcCcEEEeCHHHHHHhhc
Q psy14735 145 KAKVIMFQGETPWETTLYCLSKLHVSLESR-AKIIVNPSPAV-------Y----P-LNPIVMILADIICINEQEAEIITD 211 (340)
Q Consensus 145 ~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~-~~v~~d~~~~~-------~----~-~~~~~l~~~dil~~n~~E~~~l~~ 211 (340)
+.+.+.+..-.+.+....+.+.+ ++++ .++++||.... + + ....+++.+|++++|..|++.|+|
T Consensus 74 ~~~aikiG~l~s~~~i~~i~~~l---~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g 150 (270)
T PRK12616 74 GVDAMKTGMLPTVDIIELAADTI---KEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSG 150 (270)
T ss_pred CCCEEEECCCCCHHHHHHHHHHH---HhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcC
Confidence 46888887766788888888888 7765 35899996421 1 1 123477789999999999999999
Q ss_pred C-CCCChhhHHHHHHHHHhcCCCEEEEEecCCce------EEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHH
Q psy14735 212 M-KINNEEDLADCMEKLLDMKCNTVIITLGGSGV------VYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLC 284 (340)
Q Consensus 212 ~-~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~------~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~ 284 (340)
. ...+.+++.++++.++++|++.|+||.|+.|. ++++.+ ..+.++. +.++..|++|+||+|.|+|+++++
T Consensus 151 ~~~~~~~~~~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~--~~~~~~~-~~~~~~~t~GaGD~fsaalaa~l~ 227 (270)
T PRK12616 151 MGEIKTVEQMKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGE--TAEVLES-EMIDTPYTHGAGCTFSAAVTAELA 227 (270)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECC--eEEEEEe-eeeCCCCCCcHHHHHHHHHHHHHH
Confidence 7 56677788999999999999999999998762 455554 4567777 777888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcc
Q psy14735 285 YFPQLPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 285 ~~~g~~~~~a~~~a~~~Aa~~~~~ 308 (340)
+ |+++++|+++|..+....++.
T Consensus 228 ~--g~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 228 K--GSEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred C--CCCHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999988876
No 62
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.64 E-value=1.3e-14 Score=140.02 Aligned_cols=171 Identities=17% Similarity=0.185 Sum_probs=128.8
Q ss_pred CCCHHHHHHHHh-hccC--CcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeCCCC------CCCC------c----h
Q psy14735 130 YLSASDIDAAKN-LLLK--AKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPA------VYPL------N----P 190 (340)
Q Consensus 130 ~~~~~~i~~~~~-~~~~--~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~------~~~~------~----~ 190 (340)
.++++.+....+ .+++ .+++.++.-.+.+....+++.+ + +.++++||... +++. . .
T Consensus 281 ~~~~~~~~~ql~~l~~d~~~~~Ik~G~l~s~e~i~~i~~~l---~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~ 355 (504)
T PTZ00347 281 VVNEDFFAAQIDSVMSDFNISVVKLGLVPTARQLEIVIEKL---K--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKE 355 (504)
T ss_pred eCCHHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHHh---c--CCCEEEcccceeCCCCcccchhHHHHHHHHHHH
Confidence 355566554332 3444 4555555455678888888888 5 56899997431 1211 1 1
Q ss_pred hhhhcCcEEEeCHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCCEEEEEecCCc-------eEEEecCCCceEEEccCCC
Q psy14735 191 IVMILADIICINEQEAEIITDMK-INNEEDLADCMEKLLDMKCNTVIITLGGSG-------VVYATRDNPRLKTITVDHV 262 (340)
Q Consensus 191 ~~l~~~dil~~n~~E~~~l~~~~-~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G-------~~~~~~~~~~~~~~p~~~~ 262 (340)
.+++.+|++++|..|++.|+|.+ ..+.++..++++.+.++|++.||||.|..| .+++..++...+++|. ++
T Consensus 356 ~Ll~~advitPN~~Ea~~L~g~~~~~~~~~~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 434 (504)
T PTZ00347 356 RIFPMATIITPNIPEAERILGRKEITGVYEARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTA-NR 434 (504)
T ss_pred hccCcceEEeCCHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEe-ee
Confidence 46688999999999999999974 556677888999999999999999999863 3455432224677888 77
Q ss_pred cCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcc
Q psy14735 263 EYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 263 ~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~ 308 (340)
++++|++|+||+|.|+|++++++ |+++++|+++|..+-...+..
T Consensus 435 i~~~~~~GaGD~fsaaiaa~la~--G~~l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 435 IATINTHGTGCTLASAISSFLAR--GYTVPDAVERAIGYVHEAIVR 478 (504)
T ss_pred ECCCCCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999 999999999998888877765
No 63
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.64 E-value=1e-14 Score=131.53 Aligned_cols=177 Identities=16% Similarity=0.181 Sum_probs=122.4
Q ss_pred CCCCCHHHHHHHHhhccC-----CcEEEEeCCC-CHHHHHHHHHhchhcccCC--ceEEEeCCC----CCC------CCc
Q psy14735 128 NTYLSASDIDAAKNLLLK-----AKVIMFQGET-PWETTLYCLSKLHVSLESR--AKIIVNPSP----AVY------PLN 189 (340)
Q Consensus 128 ~~~~~~~~i~~~~~~~~~-----~~~v~i~~~~-~~~~~~~~~~~a~~~~~~~--~~v~~d~~~----~~~------~~~ 189 (340)
...+++++++.+.+.+++ ...++++|.+ +.+....+++.+++.++.+ .++++||.- .+| +.+
T Consensus 54 g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~ 133 (296)
T PTZ00344 54 GHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAY 133 (296)
T ss_pred CeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHH
Confidence 356777777665544321 2234445555 4566666665551113344 478899642 212 224
Q ss_pred hhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEE---ecCCc----eEEEec--CC--CceEEEc
Q psy14735 190 PIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIIT---LGGSG----VVYATR--DN--PRLKTIT 258 (340)
Q Consensus 190 ~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt---~G~~G----~~~~~~--~~--~~~~~~p 258 (340)
..+++++|++++|+.|++.|+|.+..+.++..++++.+.+.|++.|+|| .|..| +++... ++ .+.+.++
T Consensus 134 ~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 213 (296)
T PTZ00344 134 RELIPYADVITPNQFEASLLSGVEVKDLSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGK 213 (296)
T ss_pred HHHhhhCCEEeCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEe
Confidence 4677899999999999999999876677778888999998899999999 55556 444431 11 1345566
Q ss_pred cCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhccc
Q psy14735 259 VDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNV 309 (340)
Q Consensus 259 ~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~ 309 (340)
. ++++ ++++|+||+|.|+|++.+.+ | ++++|+++|.+....+++..
T Consensus 214 ~-~~~~-~~~~GaGD~f~A~~~a~l~~--g-~~~~a~~~A~a~~~~~i~~~ 259 (296)
T PTZ00344 214 V-PYIE-GRYTGTGDLFAALLLAFSHQ--H-PMDLAVGKAMGVLQDIIKAT 259 (296)
T ss_pred c-cccC-CCCCCchHHHHHHHHHHHhc--C-CHHHHHHHHHHHHHHHHHHH
Confidence 6 5555 57799999999999988888 8 99999999999888777653
No 64
>KOG3009|consensus
Probab=99.61 E-value=2.7e-14 Score=128.62 Aligned_cols=239 Identities=18% Similarity=0.241 Sum_probs=164.9
Q ss_pred cEEEEcccccceeeecCCCCC-CCCeeecCceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCc
Q psy14735 16 DIVVVGSCLVEFITYVQTLPK-PEETVKGYHFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSIN 94 (340)
Q Consensus 16 ~I~viG~~~iD~~~~~~~~~~-~~~~~~~~~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~ 94 (340)
|=+++|...+|....+++-.+ .|.++.+ ......||.+.|.|.++++||.++.|++.+|+|..+.+.+..-
T Consensus 342 KPv~vGa~i~D~~~k~d~d~K~dG~sy~~-~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~n~~~~~~~~------- 413 (614)
T KOG3009|consen 342 KPVSVGATIVDFEAKTDEDVKDDGGSYNG-QVVQAMGGVARNHADALARLGCDSVLISAVGDDNNGHFFRQNS------- 413 (614)
T ss_pred CceeecceEEEeEEeecccccccCCcccc-hhhhhccchhhhHHHHHHHhcCCeeEEEEeccCCcchhhhhhh-------
Confidence 339999999999999886433 3445554 6667899999999999999999999999999983222111000
Q ss_pred ccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCC
Q psy14735 95 TKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESR 174 (340)
Q Consensus 95 ~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~ 174 (340)
.++ ++.- +.+.++++++++++++..+..++++ + +++.
T Consensus 414 ----------------------------------~~~----~e~~-~dl~~a~~I~~DsNiS~~~Ma~il~-a---k~~k 450 (614)
T KOG3009|consen 414 ----------------------------------HKI----VESN-EDLLSADFILLDSNISVPVMARILE-A---KKHK 450 (614)
T ss_pred ----------------------------------hhh----hhhh-hhhhcCCEEEEcCCCCHHHHHHHHH-h---hhcc
Confidence 000 0000 1123789999999999999999999 7 8999
Q ss_pred ceEEEeCCCCCC--CCchhh-hhcCcEEEeCHHHHHHhh-cCCC-------CChhhHHHHHHHHHh---cCCCEEEEEec
Q psy14735 175 AKIIVNPSPAVY--PLNPIV-MILADIICINEQEAEIIT-DMKI-------NNEEDLADCMEKLLD---MKCNTVIITLG 240 (340)
Q Consensus 175 ~~v~~d~~~~~~--~~~~~~-l~~~dil~~n~~E~~~l~-~~~~-------~~~~~~~~~~~~l~~---~g~~~vvvt~G 240 (340)
.+|+|.|..... +..+-+ .-.++.+++|..|+-... +... ...+.+.+.++...+ .....+++|.-
T Consensus 451 ~~V~fEPTd~~k~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~~~~~~~~~k~~~~~s~~I~tl~ 530 (614)
T KOG3009|consen 451 KQVWFEPTDIDKVKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGVLELIEKEKTKLLLNTSIFIVTLA 530 (614)
T ss_pred CceEecCCCchhhhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHHHHHHHHHHHhhcccceEEEEec
Confidence 999999976532 111111 233889999999983221 1111 122344444444433 35678999999
Q ss_pred CCceEEEecCCC---ceEEEccCCC--cCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcc
Q psy14735 241 GSGVVYATRDNP---RLKTITVDHV--EYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 241 ~~G~~~~~~~~~---~~~~~p~~~~--~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~ 308 (340)
.+|+++..++.. +....|+ +. .++++..||||+|++++..+++. +.++.+++.-+..++....+.
T Consensus 531 ~~G~l~~yr~k~g~l~~~s~~p-~~~~~n~vsvsgaGdsf~~g~i~~l~~--~~~v~es~~gg~~~~ralls~ 600 (614)
T KOG3009|consen 531 NKGSLVVYRNKLGQLEFQSLPP-PLQMNNVVSVSGAGDSFNSGVIAGLAH--NKTVVESLQGGQECARALLST 600 (614)
T ss_pred cCceEEEecCCCCCcccccCCC-cccccceeEeccCCcccccceeehhhc--CcchHhhccccHHHHHHHHhc
Confidence 999987655421 1233444 32 27999999999999999999999 999999999995555554443
No 65
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.61 E-value=2.1e-14 Score=138.57 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=126.4
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhchhcccCCce-EEEeCCCC------CC------CCchhhhhcCcEEEeCHHHHHHhhc
Q psy14735 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRAK-IIVNPSPA------VY------PLNPIVMILADIICINEQEAEIITD 211 (340)
Q Consensus 145 ~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~-v~~d~~~~------~~------~~~~~~l~~~dil~~n~~E~~~l~~ 211 (340)
+.+++.+..-.+.+.+..+++.+ ++.+.+ +++||.-. +. .....+++.+|++++|..|++.|+|
T Consensus 78 ~~~aik~G~l~~~~~i~~i~~~l---~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g 154 (502)
T PLN02898 78 PVDVVKTGMLPSAEIVKVLCQAL---KEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLG 154 (502)
T ss_pred CCCEEEECCcCCHHHHHHHHHHH---HhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhC
Confidence 46777776666778888889888 777764 99999421 10 1113577889999999999999998
Q ss_pred CC-CCChhhHHHHHHHHHhcCCCEEEEEecCCc------eEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHH
Q psy14735 212 MK-INNEEDLADCMEKLLDMKCNTVIITLGGSG------VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLC 284 (340)
Q Consensus 212 ~~-~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~ 284 (340)
.. ..+.++..++++.|.++|++.|+||.|+.+ .++++++ ..++++. ++++.+|++|+||+|.|+|+++++
T Consensus 155 ~~~~~~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~--~~~~~~~-~~i~~~~t~GaGD~fsaaiaa~l~ 231 (502)
T PLN02898 155 GDPLETVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGT--EFHELRS-SRIKTRNTHGTGCTLASCIAAELA 231 (502)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCC--eEEEEec-ceeCCCCCCchhhhHHHHHHHHHH
Confidence 53 456677889999999999999999999853 3556543 5667788 777888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhccc
Q psy14735 285 YFPQLPLGEIILRSCHVARQSLFNV 309 (340)
Q Consensus 285 ~~~g~~~~~a~~~a~~~Aa~~~~~~ 309 (340)
+ |+++++|+++|..+...++++.
T Consensus 232 ~--G~~l~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 232 K--GSDMLSAVKVAKRYVETALEYS 254 (502)
T ss_pred c--CCCHHHHHHHHHHHHHHHHHhh
Confidence 9 9999999999999999998764
No 66
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.61 E-value=1.5e-14 Score=127.77 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=121.1
Q ss_pred hccCCcEEEEeCCCCH-HHHHHHHHhchhcccCCceEEEeCCCCCC-CCch--hhhhcCcEEEeCHHHHHHhhcCCCCC-
Q psy14735 142 LLLKAKVIMFQGETPW-ETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNP--IVMILADIICINEQEAEIITDMKINN- 216 (340)
Q Consensus 142 ~~~~~~~v~i~~~~~~-~~~~~~~~~a~~~~~~~~~v~~d~~~~~~-~~~~--~~l~~~dil~~n~~E~~~l~~~~~~~- 216 (340)
.+.+++++++++.++. +....+++.+ ++++.|+++|+.+... .... .+.+..++++||..|++.|++.+..+
T Consensus 74 ~~~~~d~v~ig~gl~~~~~~~~i~~~~---~~~~~pvVlDa~~~~~~~~~~~~~~~~~~~iltPn~~E~~~L~g~~~~~~ 150 (254)
T cd01171 74 LLERADAVVIGPGLGRDEEAAEILEKA---LAKDKPLVLDADALNLLADEPSLIKRYGPVVLTPHPGEFARLLGALVEEI 150 (254)
T ss_pred hhccCCEEEEecCCCCCHHHHHHHHHH---HhcCCCEEEEcHHHHHhhcChhhhccCCCEEECCCHHHHHHHhCCChhhh
Confidence 3678899999876654 7888899988 8889999999875421 1110 13567899999999999999976543
Q ss_pred hhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHH
Q psy14735 217 EEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIIL 296 (340)
Q Consensus 217 ~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~ 296 (340)
.++..++++.+.+++. .++|..| .+.++++.+ ..++++. .....++++|+||+|.|.+.+.+.+ |+++.+|++
T Consensus 151 ~~~~~~~a~~l~~~~~-~~vvlkG-~~~~i~~~~--~~~~~~~-~~~~~~~~~GaGD~lag~iaa~la~--g~~~~eA~~ 223 (254)
T cd01171 151 QADRLAAAREAAAKLG-ATVVLKG-AVTVIADPD--GRVYVNP-TGNPGLATGGSGDVLAGIIAALLAQ--GLSPLEAAA 223 (254)
T ss_pred hhHHHHHHHHHHHHcC-cEEEEcC-CCCEEECCC--CcEEEEC-CCCcccccCchHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 2355678888888764 5555667 456666654 2455666 6678899999999998888888889 999999999
Q ss_pred HHHHHHHHHhccc
Q psy14735 297 RSCHVARQSLFNV 309 (340)
Q Consensus 297 ~a~~~Aa~~~~~~ 309 (340)
+|+.+.+.+.+..
T Consensus 224 ~A~~~~~~a~~~~ 236 (254)
T cd01171 224 LAVYLHGLAGDLA 236 (254)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 67
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.60 E-value=1.6e-14 Score=126.64 Aligned_cols=156 Identities=26% Similarity=0.279 Sum_probs=118.7
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeCCCC------C-C----C-CchhhhhcCcEEEeCHHHHHHhhcC
Q psy14735 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPA------V-Y----P-LNPIVMILADIICINEQEAEIITDM 212 (340)
Q Consensus 145 ~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~------~-~----~-~~~~~l~~~dil~~n~~E~~~l~~~ 212 (340)
+++++.++.-.+.+....+.+.+ ++.+.++++||.-. . . + ....+++.+|+++||..|++.|+|.
T Consensus 60 ~~~aikiG~l~~~~~v~~i~~~l---~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~ 136 (246)
T PF08543_consen 60 KFDAIKIGYLGSAEQVEIIADFL---KKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGR 136 (246)
T ss_dssp C-SEEEE-S-SSHHHHHHHHHHH---HHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS
T ss_pred cccEEEEcccCCchhhhhHHHHH---hccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCC
Confidence 68899988777788888888888 77778999998411 1 0 1 2234889999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCCEEEEEecCC----c---eEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHc
Q psy14735 213 KINNEEDLADCMEKLLDMKCNTVIITLGGS----G---VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCY 285 (340)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~----G---~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~ 285 (340)
++.+.+++.++++.|+++|++.|+||-+.. + .++++.+ +.+.++. +..+..+..|+||.|.|+++..|++
T Consensus 137 ~i~~~~~~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~~~~--~~~~~~~-~~~~~~~~~GTGd~fss~laa~l~~ 213 (246)
T PF08543_consen 137 EINSEEDIEEAAKALLALGPKNVVITGGHLDGDEGIITDVLYDGG--EFYWLSS-PRIPTGSFHGTGDLFSSALAAFLAK 213 (246)
T ss_dssp --SSHHHHHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEETTS--EEEEEEE-EEECTSGCTTHHHHHHHHHHHHHHT
T ss_pred CCCChHhHHHHHHHHHHhCCceEEEeeeccccccccccceeeecc--ceeecce-eEEcCCCCCCchhHHHHHHHHHHHc
Confidence 889999999999999999999999998873 2 3445333 5666666 5455568899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcc
Q psy14735 286 FPQLPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 286 ~~g~~~~~a~~~a~~~Aa~~~~~ 308 (340)
|+++++|++.|...-...+++
T Consensus 214 --g~~l~~Av~~A~~~v~~~i~~ 234 (246)
T PF08543_consen 214 --GYSLEEAVEKAKNFVRRAIKN 234 (246)
T ss_dssp --TSSHHHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887764
No 68
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.57 E-value=1.7e-13 Score=118.02 Aligned_cols=170 Identities=18% Similarity=0.198 Sum_probs=137.9
Q ss_pred CCCHHHHHHHHhh-cc--CCcEEEEeCCCCHHHHHHHHHhchhcccCC-ceEEEeCC-----C-CC-C-----CCchhhh
Q psy14735 130 YLSASDIDAAKNL-LL--KAKVIMFQGETPWETTLYCLSKLHVSLESR-AKIIVNPS-----P-AV-Y-----PLNPIVM 193 (340)
Q Consensus 130 ~~~~~~i~~~~~~-~~--~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~-~~v~~d~~-----~-~~-~-----~~~~~~l 193 (340)
.+.++.++...+. ++ +++++-+......+++..+.+.+ ++++ .++++||. + .+ . .+...++
T Consensus 54 ~v~~~~v~~Ql~av~~D~~v~avKtGML~~~eiie~va~~l---~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~Ll 130 (263)
T COG0351 54 PVPPEFVEAQLDAVFSDIPVDAVKTGMLGSAEIIEVVAEKL---KKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELL 130 (263)
T ss_pred eCCHHHHHHHHHHHhhcCCCCEEEECCcCCHHHHHHHHHHH---HhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhh
Confidence 3555655543332 22 46778887777889999999998 8888 77999983 1 11 1 2345889
Q ss_pred hcCcEEEeCHHHHHHhhcC-CCCChhhHHHHHHHHHhcCCCEEEEEecCCc----eEEEecCCCceEEEccCCCcCcccC
Q psy14735 194 ILADIICINEQEAEIITDM-KINNEEDLADCMEKLLDMKCNTVIITLGGSG----VVYATRDNPRLKTITVDHVEYPIES 268 (340)
Q Consensus 194 ~~~dil~~n~~E~~~l~~~-~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G----~~~~~~~~~~~~~~p~~~~~~vvdt 268 (340)
+.+++++||..|++.|+|. ++.+.++..++++.+++.|++.|+|+-|... .++|+.+ ..+.++. +.++..++
T Consensus 131 P~a~vvTPNl~EA~~L~g~~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~--~~~~f~~-~ri~t~~t 207 (263)
T COG0351 131 PLATVVTPNLPEAEALSGLPKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDGG--SFYTFEA-PRIPTKNT 207 (263)
T ss_pred ccCeEecCCHHHHHHHcCCCccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcCC--ceEEEec-cccCCCCC
Confidence 9999999999999999995 8889999999999999999999999988743 3556555 5777778 77788899
Q ss_pred CCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhc
Q psy14735 269 EGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLF 307 (340)
Q Consensus 269 tGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~ 307 (340)
.|+|++|.|++++.|++ |.++++|++.|-..-..+++
T Consensus 208 HGTGCTlSaAIaa~LA~--G~~l~~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 208 HGTGCTLSAAIAANLAK--GLSLEEAVKKAKEFVTRAIR 244 (263)
T ss_pred CCccHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 99999999999999988888
No 69
>PLN02978 pyridoxal kinase
Probab=99.53 E-value=2.1e-12 Score=116.86 Aligned_cols=172 Identities=20% Similarity=0.161 Sum_probs=118.6
Q ss_pred CCCHHHHHHHHhhcc-----CCcEEEEeCCCCHHH---HHHHHHhchhccc--CCceEEEeCCCC----CC------CCc
Q psy14735 130 YLSASDIDAAKNLLL-----KAKVIMFQGETPWET---TLYCLSKLHVSLE--SRAKIIVNPSPA----VY------PLN 189 (340)
Q Consensus 130 ~~~~~~i~~~~~~~~-----~~~~v~i~~~~~~~~---~~~~~~~a~~~~~--~~~~v~~d~~~~----~~------~~~ 189 (340)
.+++++++.+.+.++ .++.+++..-.+.+. ..++++.+ +. .++++++||... .+ +.+
T Consensus 66 ~~~~~~~~~~l~~~~~~~~~~~~ai~~G~l~s~~~~~~v~~~l~~~---~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~ 142 (308)
T PLN02978 66 VLDGEQLWALIEGLEANGLLFYTHLLTGYIGSVSFLRTVLRVVKKL---RSVNPNLTYVCDPVLGDEGKLYVPPELVPVY 142 (308)
T ss_pred eCCHHHHHHHHHHHHHcCCcccCEEEecccCCHHHHHHHHHHHHHH---HHhCCCCeEEECCcccCCCCccCChhHHHHH
Confidence 455556654433222 267777654434343 45555555 54 346788898622 11 012
Q ss_pred -hhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecC-CceEE-Ee--cC----CCceEEEccC
Q psy14735 190 -PIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGG-SGVVY-AT--RD----NPRLKTITVD 260 (340)
Q Consensus 190 -~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~-~~--~~----~~~~~~~p~~ 260 (340)
..+++.+|++++|+.|++.|+|.++.+.++..++++.+.++|++.||||.+. .|.+. .. .+ .++.++++.
T Consensus 143 ~~~ll~~adiitPN~~Ea~~L~g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 221 (308)
T PLN02978 143 REKVVPLATMLTPNQFEAEQLTGIRIVTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVI- 221 (308)
T ss_pred HHHHHhhCCeeccCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEc-
Confidence 2588999999999999999999877677788889999999999999998754 34332 21 10 014556666
Q ss_pred CCcCcccCCCcchHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHhcc
Q psy14735 261 HVEYPIESEGVGDCFVGALAYYLCYFPQ-LPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 261 ~~~~vvdttGaGDaF~ag~~~~l~~~~g-~~~~~a~~~a~~~Aa~~~~~ 308 (340)
++.+.. ++|+||+|.|.+++.+.+ | .++++|++.|...-...++.
T Consensus 222 ~~i~~~-~~GtGD~fsA~laa~l~~--g~~~l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 222 PKIPAY-FTGTGDLMAALLLGWSHK--YPDNLDKAAELAVSSLQAVLRR 267 (308)
T ss_pred cCCCCC-CCCchHHHHHHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHH
Confidence 566554 589999999988888888 8 79999999998888877665
No 70
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.52 E-value=3.5e-13 Score=135.46 Aligned_cols=172 Identities=10% Similarity=0.072 Sum_probs=131.3
Q ss_pred CCCHHHHHHHHhh-cc--CCcEEEEeCCCCHHHHHHHHHhchhcccC-CceEEEeCCCC------CC-----CCchhhhh
Q psy14735 130 YLSASDIDAAKNL-LL--KAKVIMFQGETPWETTLYCLSKLHVSLES-RAKIIVNPSPA------VY-----PLNPIVMI 194 (340)
Q Consensus 130 ~~~~~~i~~~~~~-~~--~~~~v~i~~~~~~~~~~~~~~~a~~~~~~-~~~v~~d~~~~------~~-----~~~~~~l~ 194 (340)
.++++.+....+. ++ +.+.+-++.-.+.+....+++.+ ++. +.++++||... +. +.+..+++
T Consensus 292 ~~~~~~v~~Ql~~~~~d~~~~aiKiGmL~s~e~v~~i~~~l---~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp 368 (755)
T PRK09517 292 TPPLTFLEEQLEAVFSDVTVDAVKLGMLGSADTVDLVASWL---GSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAV 368 (755)
T ss_pred eCCHHHHHHHHHHHHcCCCCCEEEECCCCCHHHHHHHHHHH---HhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhC
Confidence 3455555443332 33 36778887666778888888888 664 46799998532 11 12346889
Q ss_pred cCcEEEeCHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCCEEEEEecC------CceEEEecCCCceEEEccCCCcCccc
Q psy14735 195 LADIICINEQEAEIITDMK-INNEEDLADCMEKLLDMKCNTVIITLGG------SGVVYATRDNPRLKTITVDHVEYPIE 267 (340)
Q Consensus 195 ~~dil~~n~~E~~~l~~~~-~~~~~~~~~~~~~l~~~g~~~vvvt~G~------~G~~~~~~~~~~~~~~p~~~~~~vvd 267 (340)
.+|++++|..|++.|+|.. ..+.++..++++.+.+.+...||||.|. .++++..++ ..++++. +.++.+|
T Consensus 369 ~adlItPN~~Ea~~L~g~~~~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~--~~~~~~~-~~v~~~~ 445 (755)
T PRK09517 369 HVDVVTPNIPELAVLCGEAPAITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPDG--SVHQVEN-PRVNTTN 445 (755)
T ss_pred cccCccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCCC--eEEEEee-cccCCCC
Confidence 9999999999999999953 4566778888999987544589999984 466655443 5677888 7888899
Q ss_pred CCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhccc
Q psy14735 268 SEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNV 309 (340)
Q Consensus 268 ttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~ 309 (340)
++|+||+|.|+|+++|++ |+++++|++.|..+-...+...
T Consensus 446 t~GaGDtfsaaiaa~La~--G~sl~eAv~~A~~~v~~~i~~a 485 (755)
T PRK09517 446 SHGTGCSLSAALATLIAA--GESVEKALEWATRWLNEALRHA 485 (755)
T ss_pred CcChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999 9999999999999988888663
No 71
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.51 E-value=5.7e-13 Score=129.27 Aligned_cols=220 Identities=14% Similarity=0.059 Sum_probs=143.9
Q ss_pred CCceeEEEEecCChhhHH-HHHH---HhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHH
Q psy14735 65 RASVALISKLGNDKFGKS-YLEE---LRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAK 140 (340)
Q Consensus 65 G~~v~~~~~vG~D~~g~~-i~~~---l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 140 (340)
+....+++.-|-|..|.. |... +.. .|+..-. ..|.. ..-+..| +.. -..++++.+....
T Consensus 27 ~~~~~vl~Iag~D~sGgaGi~aDl~t~~a-~g~~~~~------v~Tal--t~q~t~~---v~~----v~~~~~~~i~~ql 90 (530)
T PRK14713 27 AATPRVLSIAGTDPSGGAGIQADLKSIAA-AGGYGMA------VITAL--VAQNTRG---VRA----VHVPPADFLRAQL 90 (530)
T ss_pred CCCCeEEEEeCcCCCcHHHHHHHHHHHHH-cCCeecc------hhheE--eeecCcc---eee----eccCCHHHHHHHH
Confidence 345567788788777654 3333 445 5553221 23322 2222222 111 1234445443322
Q ss_pred h-hcc--CCcEEEEeCCCCHHHHHHHHHhchhcccC-CceEEEeCCCC------CC-----CCchhhhhcCcEEEeCHHH
Q psy14735 141 N-LLL--KAKVIMFQGETPWETTLYCLSKLHVSLES-RAKIIVNPSPA------VY-----PLNPIVMILADIICINEQE 205 (340)
Q Consensus 141 ~-~~~--~~~~v~i~~~~~~~~~~~~~~~a~~~~~~-~~~v~~d~~~~------~~-----~~~~~~l~~~dil~~n~~E 205 (340)
+ .++ ..+.+.++...+.+....+.+.+ ++. ..+|++||.-. +. +.+.++++.+|++++|..|
T Consensus 91 ~~l~~d~~~~aikiG~l~s~~~i~~v~~~l---~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~~E 167 (530)
T PRK14713 91 DAVSDDVTVDAVKIGMLGDAEVIDAVRTWL---AEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNLPE 167 (530)
T ss_pred HHHHhCCCCCEEEECCcCCHHHHHHHHHHH---HhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCChHH
Confidence 2 233 36778886555666666666666 443 33588998521 11 1234689999999999999
Q ss_pred HHHhhcCCC-CChhhHHHHHHHHHhcCCCEEEEEecCCc-----eEEEecCCCceEEEccCCCcCcccCCCcchHHHHHH
Q psy14735 206 AEIITDMKI-NNEEDLADCMEKLLDMKCNTVIITLGGSG-----VVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGAL 279 (340)
Q Consensus 206 ~~~l~~~~~-~~~~~~~~~~~~l~~~g~~~vvvt~G~~G-----~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~ 279 (340)
++.|+|.++ .+.++..++++.+.+.+.+.||||.|..+ .+++..++ +.++++. ++++.+|++|+||+|.|+|
T Consensus 168 a~~Ltg~~~~~~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~-~~~~~~~-~~v~~~~t~GaGD~fsaal 245 (530)
T PRK14713 168 LAVLLGEPPATTWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDG-AVTEVPG-PRVDTRNTHGTGCSLSSAL 245 (530)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCC-eEEEEee-eeeCCCCCCcHHHHHHHHH
Confidence 999999765 35677888888888765579999988642 34454442 4677888 7788899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHhc
Q psy14735 280 AYYLCYFPQLPLGEIILRSCHVARQSLF 307 (340)
Q Consensus 280 ~~~l~~~~g~~~~~a~~~a~~~Aa~~~~ 307 (340)
+++|++ |+++++|+++|...-...+.
T Consensus 246 aa~La~--G~~l~eAv~~A~~~v~~~i~ 271 (530)
T PRK14713 246 ATRLGR--GGDWAAALRWATAWLHGAIA 271 (530)
T ss_pred HHHHHC--CCCHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999985555543
No 72
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.49 E-value=1.3e-12 Score=114.10 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=117.8
Q ss_pred HHHHHhhccCCcEEEEeCCC-C---HHHHHHHHHhchhcccCCceEEEeCCCCCCC-----Cchhhhhc--CcEEEeCHH
Q psy14735 136 IDAAKNLLLKAKVIMFQGET-P---WETTLYCLSKLHVSLESRAKIIVNPSPAVYP-----LNPIVMIL--ADIICINEQ 204 (340)
Q Consensus 136 i~~~~~~~~~~~~v~i~~~~-~---~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~-----~~~~~l~~--~dil~~n~~ 204 (340)
.+...+.+++++++++.... . .+.....++.+ ++.+.|+++||...... ...+++.. +|++++|..
T Consensus 40 ~e~~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~---~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~ 116 (242)
T cd01170 40 PEEVEELAKIAGALVINIGTLTSEQIEAMLKAGKAA---NQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNAS 116 (242)
T ss_pred HHHHHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHH---HhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHH
Confidence 33444557888999997432 2 24455556667 78899999999743221 11234544 899999999
Q ss_pred HHHHhhcCCCCC---------hhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHH
Q psy14735 205 EAEIITDMKINN---------EEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCF 275 (340)
Q Consensus 205 E~~~l~~~~~~~---------~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF 275 (340)
|++.|++.+..+ .++..++++.+.+++...|++| |.... +++.+ +.++++. .+..+.++.|+||+|
T Consensus 117 Ea~~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~Vllk-G~~d~-l~~~~--~~~~~~~-~~~~~~~v~GtGdtL 191 (242)
T cd01170 117 EIAALAGLTGLGKGVDSSSSDEEDALELAKALARKYGAVVVVT-GEVDY-ITDGE--RVVVVKN-GHPLLTKITGTGCLL 191 (242)
T ss_pred HHHHHhCCCCCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEE-CCCcE-EEECC--EEEEEeC-CCccccCCCchHHHH
Confidence 999999975432 5678888899988766679999 66654 45544 5777776 444455678999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhc
Q psy14735 276 VGALAYYLCYFPQLPLGEIILRSCHVARQSLF 307 (340)
Q Consensus 276 ~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~ 307 (340)
.|++...+++ |.++.+|+..|...-+.+.+
T Consensus 192 a~aiAa~LA~--g~~~~~A~~~A~~~~~~a~~ 221 (242)
T cd01170 192 GAVIAAFLAV--GDDPLEAAVSAVLVYGIAGE 221 (242)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999777666654
No 73
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.49 E-value=5.9e-13 Score=118.72 Aligned_cols=174 Identities=13% Similarity=0.105 Sum_probs=123.7
Q ss_pred hhccCCcEEEEeCCCC-HHHHHHHHHhchhcccCCceEEEeCCCCCC-CCchhhhhcCcEEEeCHHHHHHhhcCCCCChh
Q psy14735 141 NLLLKAKVIMFQGETP-WETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEE 218 (340)
Q Consensus 141 ~~~~~~~~v~i~~~~~-~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~-~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~ 218 (340)
+.++.++++++++.++ .+...++++.+ ++.+.|+++|+..... .........+++++||..|++.|+|....+.+
T Consensus 88 ~~~~~~davvig~Gl~~~~~~~~l~~~~---~~~~~pvVlDa~g~~l~~~~~~~~~~~~vItPN~~El~~L~g~~~~~~~ 164 (272)
T TIGR00196 88 ELLERYDVVVIGPGLGQDPSFKKAVEEV---LELDKPVVLDADALNLLTYDKPKREGEVILTPHPGEFKRLLGLVNEIQG 164 (272)
T ss_pred hhhccCCEEEEcCCCCCCHHHHHHHHHH---HhcCCCEEEEhHHHHHHhhcccccCCCEEECCCHHHHHHHhCCchhhhh
Confidence 3467889999987554 34467788888 8889999999975421 11101134689999999999999997666667
Q ss_pred hHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHH
Q psy14735 219 DLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRS 298 (340)
Q Consensus 219 ~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a 298 (340)
+..++++++.++ ...+|++.|..+.++..++ ..+..+. +....+++|+||++.|.+.+.+++ |.++.+|+..|
T Consensus 165 ~~~~aa~~l~~~-~~~vVv~kG~~~~i~~~~~--~~~~~~~--~~~~~~~~GaGD~lag~iaa~la~--g~~~~~A~~~a 237 (272)
T TIGR00196 165 DRLEAAQDIAQK-LQAVVVLKGAADVIAAPDG--DLWINKT--GNAALAKGGTGDVLAGLIGGLLAQ--NLDPFDAACNA 237 (272)
T ss_pred hHHHHHHHHHHH-hCCEEEEcCCCCEEEcCCC--eEEEECC--CCCccCCCCchHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 788888888875 3468888899998766433 4554443 456778999999966666666678 99999999777
Q ss_pred ---HHHHHHHhccc-CCCCCCCCccCcchhhh
Q psy14735 299 ---CHVARQSLFNV-GLQNSFPDKETLPDNLF 326 (340)
Q Consensus 299 ---~~~Aa~~~~~~-g~~~~~~~~~~v~~~l~ 326 (340)
+..|+..+... |+.. .+.+++.+.+.
T Consensus 238 ~~~~~~a~~~~~~~~g~~~--~~~~dl~~~i~ 267 (272)
T TIGR00196 238 AFAHGLAGDLALKNHGAYG--LTALDLIEKIP 267 (272)
T ss_pred HHHHHHHHHHHHHhcCCCC--cCHHHHHHHHH
Confidence 77777765443 4321 35556655554
No 74
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.39 E-value=1.7e-11 Score=106.31 Aligned_cols=171 Identities=19% Similarity=0.154 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHh------hccCCcEEEEeCCCCHHHH---HHHHHhchhcccCCce--EEEeCC----CCC------C-C
Q psy14735 130 YLSASDIDAAKN------LLLKAKVIMFQGETPWETT---LYCLSKLHVSLESRAK--IIVNPS----PAV------Y-P 187 (340)
Q Consensus 130 ~~~~~~i~~~~~------~~~~~~~v~i~~~~~~~~~---~~~~~~a~~~~~~~~~--v~~d~~----~~~------~-~ 187 (340)
.+.++++..+.+ .+.++|.++.+.-.+.+.. ..+++.. |+.+.. +++||. +.+ . .
T Consensus 52 v~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~~~v~~v---k~~~P~~~~l~DPVMGD~gglYV~~~~~~~ 128 (281)
T COG2240 52 VMPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIAGIVKAV---KEANPNALYLCDPVMGDPGGLYVAPEVAEA 128 (281)
T ss_pred CCCHHHHHHHHHHHHhcccccccCEEEEccCCCHHHHHHHHHHHHHH---hccCCCeEEEeCCcccCCCceeeccchHHH
Confidence 455666655433 3567888877655554544 4444454 555444 677873 111 1 1
Q ss_pred CchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCC-----ceEEEecCCC-ceEEEccCC
Q psy14735 188 LNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS-----GVVYATRDNP-RLKTITVDH 261 (340)
Q Consensus 188 ~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~-----G~~~~~~~~~-~~~~~p~~~ 261 (340)
....+++.+|++.||.-|++.|+|..+.+.++..++++.|.++|+++|+||.=.. |.+++..... ...|+-+
T Consensus 129 ~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~da~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~~-- 206 (281)
T COG2240 129 YRDELLPLADIITPNIFELEILTGKPLNTLDDAVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHISP-- 206 (281)
T ss_pred HHHhhcchhhEeCCCHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhhh--
Confidence 2337899999999999999999999999999999999999999999999997443 4444443310 1222211
Q ss_pred CcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcc
Q psy14735 262 VEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 262 ~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~ 308 (340)
.++ .+.+|.||.|.|.|++.+++ |.+..+|+..+..+-...++.
T Consensus 207 ~v~-~~~~GtGDL~sallla~lL~--g~~~~~al~~~~~~V~evl~~ 250 (281)
T COG2240 207 LVP-FIPNGTGDLFSALLLARLLE--GLSLTQALERATAAVYEVLQE 250 (281)
T ss_pred cCC-CCCCCchHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 122 34899999999999999999 999999999998888777664
No 75
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.23 E-value=5e-10 Score=100.60 Aligned_cols=171 Identities=11% Similarity=0.127 Sum_probs=121.5
Q ss_pred CCHHHHHHHHhh-cc--CCcEEEEeCCCCHHHHHHHHHhchhcccCC----c--eEEEeCC-----C-CCCC---Cc---
Q psy14735 131 LSASDIDAAKNL-LL--KAKVIMFQGETPWETTLYCLSKLHVSLESR----A--KIIVNPS-----P-AVYP---LN--- 189 (340)
Q Consensus 131 ~~~~~i~~~~~~-~~--~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~----~--~v~~d~~-----~-~~~~---~~--- 189 (340)
++++.+....+. ++ ..+++=++.-.+.+++..+.+.+ ++++ . ++++||. + .+.+ ..
T Consensus 56 v~~~~i~~Ql~all~D~~i~aIKiGmL~s~e~i~~v~~~l---~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~ 132 (321)
T PTZ00493 56 IEEKFIVEQLDSIFADVTIDVVKLGVLYSKKIISLVHNYI---TNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFA 132 (321)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHHH---HHhcccccCCCeEEECCceEECCCCccCCcHHHHHHH
Confidence 455555443332 33 36788887776778887777777 5442 2 4889984 1 1111 11
Q ss_pred -hhhhhcCcEEEeCHHHHHHhhc-----CCCCChhhHHHHHHHHHh-cCCCEEEEEecCCc------e------EEEecC
Q psy14735 190 -PIVMILADIICINEQEAEIITD-----MKINNEEDLADCMEKLLD-MKCNTVIITLGGSG------V------VYATRD 250 (340)
Q Consensus 190 -~~~l~~~dil~~n~~E~~~l~~-----~~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G------~------~~~~~~ 250 (340)
..+++.+++++||..|++.|++ .++ +.+++.++++.|++ +|++.|+||-|... . +++.++
T Consensus 133 ~~~Llp~a~viTPN~~Ea~~L~g~~~~~~~~-~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~ 211 (321)
T PTZ00493 133 LDLICPISCIITPNFYECKVILEALDCQMDL-SKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRN 211 (321)
T ss_pred HHHhhccCEEECCCHHHHHHHhCCCcccCCC-CHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCC
Confidence 3589999999999999999998 332 45678899999987 69999999987632 1 333211
Q ss_pred --------------CC-----ceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcc
Q psy14735 251 --------------NP-----RLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFN 308 (340)
Q Consensus 251 --------------~~-----~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~ 308 (340)
++ +.+.+.. +.+...++.|+||+|.++++++|++ |+++++|++.|...-..++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ri~~~~~hGTGc~fASAIAa~LA~--G~~l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 212 VGSYPTGEKQQIDAGGVTYLYDVYKLRS-KRKPGKDIHGTGCTLSTAIACYLAK--KHNILQSCIESKKYIYNCIRY 285 (321)
T ss_pred ccccccccccccccccccccceEEEEEe-cccCCCCCCChHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 10 1244555 5555567899999999999999999 999999999999888888776
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.07 E-value=8.1e-09 Score=91.43 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=106.8
Q ss_pred hhccCCcEEEEe-CCCCHHH---HHHHHHhchhcccCCceEEEeCCCCCC-CC----chhhhh--cCcEEEeCHHHHHHh
Q psy14735 141 NLLLKAKVIMFQ-GETPWET---TLYCLSKLHVSLESRAKIIVNPSPAVY-PL----NPIVMI--LADIICINEQEAEII 209 (340)
Q Consensus 141 ~~~~~~~~v~i~-~~~~~~~---~~~~~~~a~~~~~~~~~v~~d~~~~~~-~~----~~~~l~--~~dil~~n~~E~~~l 209 (340)
+.++.++.+++. |....+. ...+++.+ ++++.|+++||..... .. ...+++ +.+++++|..|+..|
T Consensus 50 ~~~~~~~alvi~~G~l~~~~~~~i~~~~~~a---~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~vItPN~~E~~~L 126 (263)
T PRK09355 50 EMAKIAGALVINIGTLTEERIEAMLAAGKIA---NEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAVIRGNASEIAAL 126 (263)
T ss_pred HHHHhcCceEEeCCCCCHHHHHHHHHHHHHH---HhcCCCEEECCcccCcchhhHHHHHHHHHhcCCcEecCCHHHHHHH
Confidence 346678888885 3333333 34445556 7788999999975421 11 122343 579999999999999
Q ss_pred hcCCC-----C---ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHH
Q psy14735 210 TDMKI-----N---NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAY 281 (340)
Q Consensus 210 ~~~~~-----~---~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~ 281 (340)
.+.+. + +.++..++++.+.+++...+++|-+. -++++.+ +.+.++. ......+.+|+||++.|.+..
T Consensus 127 ~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~--d~I~~~~--~~~~~~~-g~~~~~~v~GtGc~L~~~iaa 201 (263)
T PRK09355 127 AGEAAETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEV--DYITDGE--RVVSVHN-GHPLMTKVTGTGCLLSAVVAA 201 (263)
T ss_pred hCCCcccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCC--cEEEeCC--EEEEEeC-CCcccCCcccccHHHHHHHHH
Confidence 98642 1 23467788888888765678888443 3444433 4555653 222344568999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHh
Q psy14735 282 YLCYFPQLPLGEIILRSCHVARQSL 306 (340)
Q Consensus 282 ~l~~~~g~~~~~a~~~a~~~Aa~~~ 306 (340)
.+.. +.++.+|+..|...-+.+.
T Consensus 202 ~lA~--g~~~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 202 FAAV--EKDYLEAAAAACAVYGIAG 224 (263)
T ss_pred HHhc--CCCHHHHHHHHHHHHHHHH
Confidence 9999 9999999988877665554
No 77
>KOG2599|consensus
Probab=98.92 E-value=6.6e-08 Score=82.37 Aligned_cols=165 Identities=24% Similarity=0.218 Sum_probs=103.4
Q ss_pred CCCCHHHHHHHHh-----hccCCcEEEEeCCCCHHHH---HHHHHhchhcccCCce--EEEeCC----CCC---C---CC
Q psy14735 129 TYLSASDIDAAKN-----LLLKAKVIMFQGETPWETT---LYCLSKLHVSLESRAK--IIVNPS----PAV---Y---PL 188 (340)
Q Consensus 129 ~~~~~~~i~~~~~-----~~~~~~~v~i~~~~~~~~~---~~~~~~a~~~~~~~~~--v~~d~~----~~~---~---~~ 188 (340)
....++++..+.+ .+..++.++.+.-.....+ .++.+.. |+.+.. .++||. +.+ . ..
T Consensus 60 ~~~~~~eL~dL~egl~~nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~l---k~~np~~~wv~DPVmGDnG~lYV~eelipv 136 (308)
T KOG2599|consen 60 QVLNEEELEDLYEGLLLNNLNKYDAVLTGYLPNVSFLQKIADIVKKL---KKKNPNLTWVCDPVMGDNGRLYVPEELIPV 136 (308)
T ss_pred cccCHHHHHHHHHHHhhccccccceeeeeccCChhHHHHHHHHHHHH---HhcCCCeEEEeCccccCCccEeccHHHHHH
Confidence 3455666655433 2456677665433333333 3444444 444433 456873 111 1 11
Q ss_pred chh-hhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCC----c--eE--EEecCCCceEEEcc
Q psy14735 189 NPI-VMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVIITLGGS----G--VV--YATRDNPRLKTITV 259 (340)
Q Consensus 189 ~~~-~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~----G--~~--~~~~~~~~~~~~p~ 259 (340)
.++ +.+.+|+++||.-|++.|+|..+.+.++..++.++|+++|++.+|||...- | .+ -++.+. +.+.+..
T Consensus 137 Yr~~i~~ladiiTPNqFE~EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~-~~f~~~i 215 (308)
T KOG2599|consen 137 YRDLIIPLADIITPNQFEAEILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGS-ERFRYLI 215 (308)
T ss_pred HHHhhcchhhhcCCcchhhhhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCC-ceEEEEe
Confidence 223 344599999999999999999999999999999999999999999997653 4 11 222332 4555555
Q ss_pred CCCcCcccCCCcchHHHHHHHHHHHcCC-CCCHHHHHHHHH
Q psy14735 260 DHVEYPIESEGVGDCFVGALAYYLCYFP-QLPLGEIILRSC 299 (340)
Q Consensus 260 ~~~~~vvdttGaGDaF~ag~~~~l~~~~-g~~~~~a~~~a~ 299 (340)
|.+.. -.+|.||.|.|-+++-+.+.+ ..++..|+..+.
T Consensus 216 -pki~~-~FtGTGDLfsaLLla~~~~~~~~~~l~~a~e~~l 254 (308)
T KOG2599|consen 216 -PKIDG-VFTGTGDLFSALLLAWLHESPDNDDLSKAVEQVL 254 (308)
T ss_pred -cccce-EEecccHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 44433 346999999999888887721 134555554443
No 78
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.91 E-value=5e-08 Score=85.66 Aligned_cols=155 Identities=13% Similarity=0.040 Sum_probs=103.2
Q ss_pred hccCCcEEEEe-CCCCH---HHHHHHHHhchhcccCCceEEEeCCCCCC-----CCchhhhh--cCcEEEeCHHHHHHhh
Q psy14735 142 LLLKAKVIMFQ-GETPW---ETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMI--LADIICINEQEAEIIT 210 (340)
Q Consensus 142 ~~~~~~~v~i~-~~~~~---~~~~~~~~~a~~~~~~~~~v~~d~~~~~~-----~~~~~~l~--~~dil~~n~~E~~~l~ 210 (340)
..+.++.+++. |.... +....+++.+ ++++.|+++||..... .....+++ .++++++|..|++.|+
T Consensus 46 ~~~~~~al~ik~G~l~~~~~~~i~~~~~~~---~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~vITpN~~E~~~L~ 122 (249)
T TIGR00694 46 LAKIAGALVINIGTLDKESIEAMIAAGKSA---NELGVPVVLDPVGVGATKFRTETALELLSEGRFAAIRGNAGEIASLA 122 (249)
T ss_pred HHHHcCceEEeCCCCCHHHHHHHHHHHHHH---HhcCCCEEEcccccccchhHHHHHHHHHhhcCCceeCCCHHHHHHHh
Confidence 35677888885 33333 3345556666 7778999999975432 11234565 4799999999999999
Q ss_pred cCCC-----C---ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHH
Q psy14735 211 DMKI-----N---NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYY 282 (340)
Q Consensus 211 ~~~~-----~---~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~ 282 (340)
+... + +.++..++++.+.+++...|++|-+ . -++++++ +.+.+.. .....-..+|.||++.+.+...
T Consensus 123 g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~-~-D~i~~~~--~~~~~~~-g~~~~~~~~GtGc~LssaIaa~ 197 (249)
T TIGR00694 123 GETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGE-V-DYVSDGT--SVYTIHN-GTELLGKITGSGCLLGSVVAAF 197 (249)
T ss_pred CCCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEECC-C-cEEEeCC--EEEEECC-CChHHhCCccchHHHHHHHHHH
Confidence 8541 1 2456777888888764447777643 2 2455443 4544433 2221222479999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHh
Q psy14735 283 LCYFPQLPLGEIILRSCHVARQSL 306 (340)
Q Consensus 283 l~~~~g~~~~~a~~~a~~~Aa~~~ 306 (340)
+.. |.++.+|+..|...-..+.
T Consensus 198 LA~--g~~~~~A~~~A~~~~~~a~ 219 (249)
T TIGR00694 198 CAV--EEDPLDAAISACLLYKIAG 219 (249)
T ss_pred Hhc--CCCHHHHHHHHHHHHHHHH
Confidence 999 9999999988875554444
No 79
>KOG2598|consensus
Probab=98.90 E-value=2.7e-08 Score=89.99 Aligned_cols=157 Identities=18% Similarity=0.130 Sum_probs=121.5
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhchhcccCC-ceEEEeCC-----CCC-------CCCchhhhhcCcEEEeCHHHHHHhhc
Q psy14735 145 KAKVIMFQGETPWETTLYCLSKLHVSLESR-AKIIVNPS-----PAV-------YPLNPIVMILADIICINEQEAEIITD 211 (340)
Q Consensus 145 ~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~-~~v~~d~~-----~~~-------~~~~~~~l~~~dil~~n~~E~~~l~~ 211 (340)
+|+++-.+....+++..-+.+.+ .+.+ .++++||. +.. .-...++++.+|++.+|..|+-.|.+
T Consensus 92 ~C~VvKTGML~~~~I~~vi~q~l---~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~ 168 (523)
T KOG2598|consen 92 KCDVVKTGMLPSPEIVKVIEQSL---QKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLK 168 (523)
T ss_pred cccEEeecCcCchHHHHHHHHHH---HhhcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHh
Confidence 47888887777778777777777 4444 34777872 211 12456789999999999999999988
Q ss_pred C------CCCChhhHHHHHHHHHhcCCCEEEEEecCCce-----------------EEEecCCCceEEEccCCCcCcccC
Q psy14735 212 M------KINNEEDLADCMEKLLDMKCNTVIITLGGSGV-----------------VYATRDNPRLKTITVDHVEYPIES 268 (340)
Q Consensus 212 ~------~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~-----------------~~~~~~~~~~~~~p~~~~~~vvdt 268 (340)
. ++.+..++...+.++++.|+|.|+|..|.-.. ++|..+ +.+.++. +-+....+
T Consensus 169 ~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~--~F~~f~~-~~~~t~~t 245 (523)
T KOG2598|consen 169 KEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGK--EFYIFKS-PYLATKHT 245 (523)
T ss_pred hcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecc--eEEEecc-cccccccc
Confidence 3 35567788899999999999999999886321 233332 6777888 66777889
Q ss_pred CCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhccc
Q psy14735 269 EGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNV 309 (340)
Q Consensus 269 tGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~ 309 (340)
.|.|.++.++++..|+. |.++.+|++.|...--.+++..
T Consensus 246 HGtgCtLaSAIASnLA~--g~sl~qAv~~ai~yvq~Ai~~s 284 (523)
T KOG2598|consen 246 HGTGCTLASAIASNLAR--GYSLLQAVQGAIEYVQNAIAIS 284 (523)
T ss_pred cCccchHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999 9999999999988877777654
No 80
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=98.20 E-value=0.00024 Score=66.66 Aligned_cols=189 Identities=16% Similarity=0.126 Sum_probs=105.4
Q ss_pred ceeeecCChHHHHHHHHHhcCCceeE-E-EEecCChhhHHHHHHHhhhcCC----------------------cccceEe
Q psy14735 45 HFEQRFSGKGANQCVAAAKLRASVAL-I-SKLGNDKFGKSYLEELRKYNSI----------------------NTKYIWL 100 (340)
Q Consensus 45 ~~~~~~GG~~~n~a~~l~~lG~~v~~-~-~~vG~D~~g~~i~~~l~~~~gi----------------------~~~~v~~ 100 (340)
....+.||.+..+|..|+.+|.++.+ . ..+++ ...+.|.+ .+| +-+.++.
T Consensus 85 ~~~~rmGGnAgimAn~la~lg~~~Vi~~~~~lsk-----~q~~lf~~-~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~ 158 (453)
T PRK14039 85 NSEIRMGGNAGIMANVLSELGASRVVPNVAVPSK-----TQLSLFSK-KAVYFPGMPLQASETDGEKVGASSSDQEPIHF 158 (453)
T ss_pred CceEEeCChHHHHHHHHHhcCCceEEEcCCCCCH-----HHHHhcCC-CCEEeccccccccccCccccccccCCCCCceE
Confidence 44688999999999999999999644 3 33333 23344422 111 1111222
Q ss_pred eCCCCCceEEE-----EEcCCCCeEEEEeCCcCCCC--CHHHHHHHHhhccCCcEEEEeCCCC-----------HHHHHH
Q psy14735 101 LQDVTTGVCSK-----VISNKGTHQTNIIPGANTYL--SASDIDAAKNLLLKAKVIMFQGETP-----------WETTLY 162 (340)
Q Consensus 101 ~~~~~t~~~~i-----~~~~~g~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~v~i~~~~~-----------~~~~~~ 162 (340)
.-+-+.+..+. +.-+..+|-++..+..+..+ .++.-+.+.+..+++|.++++|.-. .+...+
T Consensus 159 IfEy~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~ 238 (453)
T PRK14039 159 VFDFREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLED 238 (453)
T ss_pred EEEeCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHH
Confidence 21223333331 22334444444433333333 3333333333456799999987421 222333
Q ss_pred HHHhchhc--ccCCceEEEeCCCCCC-----CCchhhhhcCcEEEeCHHHHHHhhcC---CC-----CChhhHHHHHHHH
Q psy14735 163 CLSKLHVS--LESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDM---KI-----NNEEDLADCMEKL 227 (340)
Q Consensus 163 ~~~~a~~~--~~~~~~v~~d~~~~~~-----~~~~~~l~~~dil~~n~~E~~~l~~~---~~-----~~~~~~~~~~~~l 227 (340)
+.+.+++. ...+.++-+....... ..+..+++.+|.+-+|++|+..+... .. .+.+++.+++..|
T Consensus 239 ~~~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~l 318 (453)
T PRK14039 239 SLAQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIGEAACQL 318 (453)
T ss_pred HHHHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHHHH
Confidence 33333110 2345677777655432 34457889999999999999988765 21 3466777888888
Q ss_pred Hh-cCCCEEEEEe
Q psy14735 228 LD-MKCNTVIITL 239 (340)
Q Consensus 228 ~~-~g~~~vvvt~ 239 (340)
.+ .|++.+.|..
T Consensus 319 ~~~~~le~l~vHT 331 (453)
T PRK14039 319 ASESGLQRLIIHT 331 (453)
T ss_pred HHHcCCCEEEEEe
Confidence 86 4877766654
No 81
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=98.20 E-value=0.00015 Score=62.91 Aligned_cols=152 Identities=14% Similarity=0.120 Sum_probs=96.2
Q ss_pred ccCCcEEEEe-CCCCH---HHHHHHHHhchhcccCCceEEEeCCCCCC-----CCchhhh--hcCcEEEeCHHHHHHhhc
Q psy14735 143 LLKAKVIMFQ-GETPW---ETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVM--ILADIICINEQEAEIITD 211 (340)
Q Consensus 143 ~~~~~~v~i~-~~~~~---~~~~~~~~~a~~~~~~~~~v~~d~~~~~~-----~~~~~~l--~~~dil~~n~~E~~~l~~ 211 (340)
.+.++.+++. |.... +......+.+ ++.++|+++||.+.-. +...+++ .++++++.|..|...|.+
T Consensus 47 ~~~a~al~iNiGTl~~~~~~~m~~A~~~A---~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag 123 (246)
T PF02110_consen 47 ASIADALVINIGTLTDERIEAMKKAAKAA---NELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAALAG 123 (246)
T ss_dssp HHCTSEEEEESTTSSHHHHHHHHHHHHHH---HHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHHHHT
T ss_pred HHHcCEEEEECCCCCHhHHHHHHHHHHHH---HHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHHHhC
Confidence 4567888886 44444 4456667777 8999999999975431 3344566 568999999999999988
Q ss_pred CCC-----C---ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHH
Q psy14735 212 MKI-----N---NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYL 283 (340)
Q Consensus 212 ~~~-----~---~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l 283 (340)
... + +..+..+.++.+.++.-..|++| |+.-.+ .+.. +.+.++. -..-.-.-||+|+...|.+.+.+
T Consensus 124 ~~~~~kGVDs~~~~~~~~~~a~~lA~k~~~vVvvT-G~~D~I-sdg~--~~~~i~n-G~~~l~~itGtGC~lgaliaaf~ 198 (246)
T PF02110_consen 124 EDSKAKGVDSGDSDEDAIEAAKQLAQKYNCVVVVT-GEVDYI-SDGN--RVYRIPN-GSPLLSKITGTGCMLGALIAAFL 198 (246)
T ss_dssp CCCCSCSSSSSCGSHHHHHHHHHHHHHTTSEEEEE-SSSEEE-EESS--CEEEECS-SSGGGGGSTTHHHHHHHHHHHHH
T ss_pred cCCCCCCcCcCCcchHHHHHHHHHHHhcCCEEEEe-cCCcEE-ECCC--eEEEeCC-CChHhcceeccchHHHHHHHHHH
Confidence 652 1 12235677777776543355555 555444 3333 5667766 43345567999998888877777
Q ss_pred HcCCCCCHHHHHHHHHHHHHH
Q psy14735 284 CYFPQLPLGEIILRSCHVARQ 304 (340)
Q Consensus 284 ~~~~g~~~~~a~~~a~~~Aa~ 304 (340)
.- ..++.+|...|...-..
T Consensus 199 av--~~d~~~aa~~a~~~~~~ 217 (246)
T PF02110_consen 199 AV--AEDPLEAAVAAVALYGI 217 (246)
T ss_dssp CC--CSSHHHHHHHHHHHHHH
T ss_pred hc--cccchHHHHHHHHHHHH
Confidence 66 56776666555444333
No 82
>PRK10565 putative carbohydrate kinase; Provisional
Probab=98.18 E-value=7.6e-05 Score=72.19 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=96.8
Q ss_pred ccCCcEEEEeCCC-CHHHHHHHHHhchhcccCCceEEEeCCCCCC-CCchhhhhcCcEEEeCHHHHHHhhcCCCCChh-h
Q psy14735 143 LLKAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADIICINEQEAEIITDMKINNEE-D 219 (340)
Q Consensus 143 ~~~~~~v~i~~~~-~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~-~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~-~ 219 (340)
++.++.+++..-. ..+....+++.+ ++.+.|+++|+..... ..... .+...||++|..|+..|++......+ +
T Consensus 318 ~~~~~a~viGpGlg~~~~~~~~~~~~---~~~~~P~VLDAdaL~ll~~~~~-~~~~~VLTPh~gE~~rL~~~~~~~v~~~ 393 (508)
T PRK10565 318 LEWADVVVIGPGLGQQEWGKKALQKV---ENFRKPMLWDADALNLLAINPD-KRHNRVITPHPGEAARLLGCSVAEIESD 393 (508)
T ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHH---HhcCCCEEEEchHHHHHhhCcc-ccCCeEECCCHHHHHHHhCCChhhhhhh
Confidence 5678899996433 234445666777 7778999999976310 00000 11247999999999999985432222 3
Q ss_pred HHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy14735 220 LADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEIILRSC 299 (340)
Q Consensus 220 ~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~ 299 (340)
..+.++.+.++.-..+|+ .|..- ++.+.++ +.+..+. .....-+.|.||.++|.+.+.+.+ +.++.+|+..|+
T Consensus 394 ~~~~a~~~a~~~~~~vvl-KG~~~-iI~~~~~-~~~~~~~--G~~~ma~~GsGDvLaGiIaalla~--g~~~~~Aa~~a~ 466 (508)
T PRK10565 394 RLLSARRLVKRYGGVVVL-KGAGT-VIAAEPD-ALAIIDV--GNAGMASGGMGDVLSGIIGALLGQ--KLSPYDAACAGC 466 (508)
T ss_pred HHHHHHHHHHHhCCEEEE-eCCCc-EEEcCCc-eEEEECC--CCCCCCCCChHHHHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 445666666543335555 34433 4444332 4444433 344556799999999999999999 999999888887
Q ss_pred HHHHHH
Q psy14735 300 HVARQS 305 (340)
Q Consensus 300 ~~Aa~~ 305 (340)
..=+.+
T Consensus 467 ~lhg~A 472 (508)
T PRK10565 467 VAHGAA 472 (508)
T ss_pred HHHHHH
Confidence 544433
No 83
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=98.10 E-value=0.00028 Score=66.32 Aligned_cols=187 Identities=14% Similarity=0.080 Sum_probs=99.7
Q ss_pred eeecCChHHHHHHHHHhcCCce--eEEEEecCChhhHHHHHHHhhhcCCcc--------------------cc--eEeeC
Q psy14735 47 EQRFSGKGANQCVAAAKLRASV--ALISKLGNDKFGKSYLEELRKYNSINT--------------------KY--IWLLQ 102 (340)
Q Consensus 47 ~~~~GG~~~n~a~~l~~lG~~v--~~~~~vG~D~~g~~i~~~l~~~~gi~~--------------------~~--v~~~~ 102 (340)
..+.||.+..+|..|+.+|.++ .+...++.. ..+.|....+|-. +. ++..-
T Consensus 98 ~~rmGGqAgimAn~la~lg~~~vV~~~p~lsk~-----qa~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~~~IH~I~ 172 (463)
T PRK03979 98 EERMGGQAGIISNLLAILDLKKVIAYTPWLSKK-----QAEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDPLKINRIF 172 (463)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEeCCCCCHH-----HHHHhCCCCCeeeccccCCceeeccchhhccCCCCcceEEEE
Confidence 4589999999999999999984 455555542 3334421011110 00 11111
Q ss_pred CCCCceEE-----EEEcCCCCeEEEEeCCcCCCC--CHHHHHHHHhhccCCcEEEEeCCCC--------------HHHHH
Q psy14735 103 DVTTGVCS-----KVISNKGTHQTNIIPGANTYL--SASDIDAAKNLLLKAKVIMFQGETP--------------WETTL 161 (340)
Q Consensus 103 ~~~t~~~~-----i~~~~~g~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~v~i~~~~~--------------~~~~~ 161 (340)
+-+.|..+ -+..+..+|-++..+..+..+ .++.-+.+.+....+|.++++|.-. .+...
T Consensus 173 Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef~~~L~ei~~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~ 252 (463)
T PRK03979 173 EFKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDELKEFLPEIGKMVDGAILSGYQGIKEEYSDGKTAEYYLKRAK 252 (463)
T ss_pred EeCCCCEEEecCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhccccccccHHHHHHHHH
Confidence 12222222 112233333333333233333 2322222222335699999987321 11223
Q ss_pred HHHHhchhcccCCceEEEeCCCCCC-----CCchhhhhcCcEEEeCHHHHHHhhcCC-----------CCChhhHHHHHH
Q psy14735 162 YCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMK-----------INNEEDLADCME 225 (340)
Q Consensus 162 ~~~~~a~~~~~~~~~v~~d~~~~~~-----~~~~~~l~~~dil~~n~~E~~~l~~~~-----------~~~~~~~~~~~~ 225 (340)
+.++..++ ...++++-+....... ..+..+++.+|-+-+|++|+..+.... .++.+++.+++.
T Consensus 253 ~~i~~L~~-~~~~i~iH~E~As~~~~~ir~~i~~~ilp~vDSlGmNE~ELa~l~~~lg~~~l~~~i~~~~~i~~v~~a~~ 331 (463)
T PRK03979 253 EDIKLLKK-KNKDIKIHVEFASIQNREIRKKIITYILPHVDSVGMDETEIANILNVLGYEELSERILKESRIEDVIEGAK 331 (463)
T ss_pred HHHHHHhh-CCCCceEEEEeccccCHHHHHHHHHhhccccccccCCHHHHHHHHHHhcCcchhhhhhccccHHHHHHHHH
Confidence 33333310 2346777776654432 244468899999999999999765321 223567888888
Q ss_pred HHHh-cCCCEEEEEe
Q psy14735 226 KLLD-MKCNTVIITL 239 (340)
Q Consensus 226 ~l~~-~g~~~vvvt~ 239 (340)
.|.+ .+++.+.|..
T Consensus 332 ~L~~~~~leri~vHT 346 (463)
T PRK03979 332 ILLDELNLERVQVHT 346 (463)
T ss_pred HHHHHcCCCEEEEEe
Confidence 8886 5877766654
No 84
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=98.05 E-value=0.0005 Score=64.40 Aligned_cols=184 Identities=14% Similarity=0.074 Sum_probs=100.1
Q ss_pred eecCChHHHHHHHHHhcCCce--eEEEEecCChhhHHHHHHHhhhc-CCcc--------------------cc--eEeeC
Q psy14735 48 QRFSGKGANQCVAAAKLRASV--ALISKLGNDKFGKSYLEELRKYN-SINT--------------------KY--IWLLQ 102 (340)
Q Consensus 48 ~~~GG~~~n~a~~l~~lG~~v--~~~~~vG~D~~g~~i~~~l~~~~-gi~~--------------------~~--v~~~~ 102 (340)
.+.||.+..+|..|+++|.++ .+...++. ...+.|.+ . +|-. +. ++..-
T Consensus 86 ~rmGGqAgimAn~la~lg~~~vI~~~~~ls~-----~qa~lf~~-~~ni~~p~~e~g~l~l~~~~e~~~e~d~~~IH~I~ 159 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLKKVIAYTPFLSK-----RQAEMFVA-TGNILYPVVENGKLVLKPPGEAYREGDPSKVNRIF 159 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCceEEEeCCCCCH-----HHHHHhCC-cCceeeccccCCceeeccchhccCCCCCCceEEEE
Confidence 579999999999999999985 34444554 23344433 2 1110 00 11111
Q ss_pred CCCCceEE-----EEEcCCCCeEEEEeCCcCCCC-CHHHHHHHH-hhccCCcEEEEeCCCC--------------HHHHH
Q psy14735 103 DVTTGVCS-----KVISNKGTHQTNIIPGANTYL-SASDIDAAK-NLLLKAKVIMFQGETP--------------WETTL 161 (340)
Q Consensus 103 ~~~t~~~~-----i~~~~~g~~~~~~~~~~~~~~-~~~~i~~~~-~~~~~~~~v~i~~~~~--------------~~~~~ 161 (340)
+-+.+..+ -+.-+..+|-++..+..+..+ ..++++.+. +..+.+|.++++|.-. .+...
T Consensus 160 Ey~~G~~~~lg~~~~~aPRaNRfI~s~D~~n~~l~~~~~l~~~~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~ 239 (446)
T TIGR02045 160 EFRKGTNFKLGGETIKVPRSGRFIVSSRPESLRIETKDQLRKFLPEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAK 239 (446)
T ss_pred EeCCCCeeecCCceEeccCCCeEEEecCCccccceecHHHHHhhhhhhhcccEEEEEchhhhhhhccCCccHhHHHHHHH
Confidence 11222222 112233333333322222222 112233322 2346789999987321 12334
Q ss_pred HHHHhchhcccCCceEEEeCCCCCC-----CCchhhhhcCcEEEeCHHHHHHhhcCC-----------CCChhhHHHHHH
Q psy14735 162 YCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMK-----------INNEEDLADCME 225 (340)
Q Consensus 162 ~~~~~a~~~~~~~~~v~~d~~~~~~-----~~~~~~l~~~dil~~n~~E~~~l~~~~-----------~~~~~~~~~~~~ 225 (340)
+.++.++ ...+.++-+....... ..+..+++.+|-+-+|++|+..+.... .++.+++.+++.
T Consensus 240 ~~i~~L~--~~~~i~iH~E~As~~~~~l~~~i~~~ilp~vDSlGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~ 317 (446)
T TIGR02045 240 EDIELLK--KNKDLKIHVEFASIQNREIRKKVVTNIFPHVDSVGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAK 317 (446)
T ss_pred HHHHHHh--hCCCCeEEEEecccccHHHHHHHHHhhccccccccCCHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHH
Confidence 4455542 2366777777654432 244468899999999999999877321 234567778888
Q ss_pred HHHh-cCCCEEEEEe
Q psy14735 226 KLLD-MKCNTVIITL 239 (340)
Q Consensus 226 ~l~~-~g~~~vvvt~ 239 (340)
.|++ .+++.+.|..
T Consensus 318 ~l~~~~~leri~vHT 332 (446)
T TIGR02045 318 ILLDELNLEVVQVHT 332 (446)
T ss_pred HHHHHcCCCEEEEEe
Confidence 8886 4877766654
No 85
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=97.91 E-value=0.0021 Score=60.34 Aligned_cols=185 Identities=14% Similarity=0.066 Sum_probs=102.4
Q ss_pred eeecCChHHHHHHHHHh-cCCceeEEEEecCChhhHHHHHHHhhhcCC---------------------cccceEeeCCC
Q psy14735 47 EQRFSGKGANQCVAAAK-LRASVALISKLGNDKFGKSYLEELRKYNSI---------------------NTKYIWLLQDV 104 (340)
Q Consensus 47 ~~~~GG~~~n~a~~l~~-lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi---------------------~~~~v~~~~~~ 104 (340)
..+.||.+..+|..|+. .|.+| +..++.. .+.-.+.+.. .+| +-+.++..-+-
T Consensus 106 ~~rmGGnAgimAn~la~~~g~~V--ia~~~~l--sk~qa~lf~~-~~I~~p~~~~~~l~l~~p~e~~~~~~d~IH~I~Ey 180 (453)
T PRK14038 106 ELRMGGQVGIMANLLGGVYGVPV--IAHVPQL--SKLQASLFLD-GPIYVPTFEGGELKLVHPREFVGDEENCIHYIYEF 180 (453)
T ss_pred eEEeCChHHHHHHHHHhhcCCce--EEECCCc--chhhHhhccC-CCEEeccccCCcceeccchhcccCCCCccEEEEEe
Confidence 57899999999999984 56675 5555521 1111121211 111 11111111112
Q ss_pred CCceEEE-EEcCCCCeEEEEeCCcCCCC--CHHHHHHHHhhccCCcEEEEeCCCC------HHH---HHHHHHhchhccc
Q psy14735 105 TTGVCSK-VISNKGTHQTNIIPGANTYL--SASDIDAAKNLLLKAKVIMFQGETP------WET---TLYCLSKLHVSLE 172 (340)
Q Consensus 105 ~t~~~~i-~~~~~g~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~v~i~~~~~------~~~---~~~~~~~a~~~~~ 172 (340)
+.|..+. +..+..+|-+...+..+..+ .++..+.+.+...++|.++++|.-. .+. ..+.++.. +.
T Consensus 181 ~~G~~~~~~~aPRaNRfI~s~D~~N~~l~~~eef~~~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l---~~ 257 (453)
T PRK14038 181 PRGFRVFDFEAPRENRFIGAADDYNPNLYIRPEFRERFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVL---NE 257 (453)
T ss_pred CCCCEEeeeEcCCCceEEEecCCCCcceeecHHHHHHHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhc---Cc
Confidence 2222221 12244444444443333333 3333344444567899999988431 122 33444444 55
Q ss_pred CCceEEEeCCCC----CCCCchhhhhcCcEEEeCHHHHHHhhcCC-----------CC--ChhhHHHHHHHHHh-cCCCE
Q psy14735 173 SRAKIIVNPSPA----VYPLNPIVMILADIICINEQEAEIITDMK-----------IN--NEEDLADCMEKLLD-MKCNT 234 (340)
Q Consensus 173 ~~~~v~~d~~~~----~~~~~~~~l~~~dil~~n~~E~~~l~~~~-----------~~--~~~~~~~~~~~l~~-~g~~~ 234 (340)
.++++-+..... .++.+..+++.+|-+-+|++|+..+.... .+ +.+++.+++..|++ .|++.
T Consensus 258 ~~i~iH~EfAs~~d~~~r~~i~~ilp~vDSlGmNE~ELa~ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gler 337 (453)
T PRK14038 258 RGIPAHLEFAFTPDETVREEILGLLGKFYSVGLNEVELASIMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGVKR 337 (453)
T ss_pred CCceEEEEeeccchHHHHHHHHhhCccccccccCHHHHHHHHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCCCE
Confidence 678887776533 12223357889999999999999887521 22 56778888888887 58887
Q ss_pred EEEEe
Q psy14735 235 VIITL 239 (340)
Q Consensus 235 vvvt~ 239 (340)
+.|..
T Consensus 338 i~vHT 342 (453)
T PRK14038 338 IHFHT 342 (453)
T ss_pred EEEEe
Confidence 76664
No 86
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=97.90 E-value=6.1e-05 Score=65.65 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=98.6
Q ss_pred hhccCCcEEEEeCCC-CHHHHHHHHHhchhcccCCceEEEeCCCCCCCCch---hhhhcCcEEEeCHHHHHHhhcCCCCC
Q psy14735 141 NLLLKAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNP---IVMILADIICINEQEAEIITDMKINN 216 (340)
Q Consensus 141 ~~~~~~~~v~i~~~~-~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~---~~l~~~dil~~n~~E~~~l~~~~~~~ 216 (340)
+.+++++.+++..-. ..+...++++.. .+...|+++|...... +. ......-|++|+.-|+..|++.....
T Consensus 63 ~~~~~~~av~iGPGlg~~~~~~~~~~~~---~~~~~p~VlDADaL~~--l~~~~~~~~~~~IlTPH~gE~~rL~~~~~~~ 137 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRDEETEELLEEL---LESDKPLVLDADALNL--LAENPKKRNAPVILTPHPGEFARLLGKSVEI 137 (242)
T ss_dssp HHHCH-SEEEE-TT-SSSHHHHHHHHHH---HHHCSTEEEECHHHHC--HHHCCCCSSSCEEEE-BHHHHHHHHTTTCHH
T ss_pred hhhccCCEEEeecCCCCchhhHHHHHHH---HhhcceEEEehHHHHH--HHhccccCCCCEEECCCHHHHHHHhCCcccc
Confidence 447889999997433 223344566665 5556789999864321 11 23455779999999999999976533
Q ss_pred hhhHHHHHHHHHhc-CCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCCCHHHHH
Q psy14735 217 EEDLADCMEKLLDM-KCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQLPLGEII 295 (340)
Q Consensus 217 ~~~~~~~~~~l~~~-g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~~~~~a~ 295 (340)
.++..+.++.+.+. ++ ++|-.|..-.++..++ +.+..+. ...-.-+-|.||.+++-+...+.+ +.++.+|+
T Consensus 138 ~~~~~~~a~~~a~~~~~--~vvLKG~~t~I~~p~~--~~~~n~~--gn~~la~gGsGDvLaGii~~llaq--~~~~~~Aa 209 (242)
T PF01256_consen 138 QEDRIEAAREFAKEYGA--VVVLKGAVTIIASPGG--RVYVNPT--GNPGLATGGSGDVLAGIIAGLLAQ--GYDPFEAA 209 (242)
T ss_dssp CCSHHHHHHHHHHHHTS--EEEEESTSSEEEEETS--EEEEE------GGGSSTTHHHHHHHHHHHHHHH--TSSHHHHH
T ss_pred hhhHHHHHHHHHhhcCc--EEEEeCCCcEEEecCc--ceeEeCC--CCCCCCCCCcccHHHHHHHHHHHc--cCCHHHHH
Confidence 34566777777653 43 4444566655555444 5555554 345667889999999999998999 99999999
Q ss_pred HHHHHHHHHHh
Q psy14735 296 LRSCHVARQSL 306 (340)
Q Consensus 296 ~~a~~~Aa~~~ 306 (340)
..|+..=+.+-
T Consensus 210 ~~av~lHg~Ag 220 (242)
T PF01256_consen 210 CLAVYLHGRAG 220 (242)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88876544443
No 87
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.82 E-value=0.0013 Score=56.62 Aligned_cols=154 Identities=13% Similarity=0.141 Sum_probs=93.7
Q ss_pred CHHHHHHHHhhccCCcEEEEe-CCCCH---HHHHHHHHhchhcccCCceEEEeCCCCCC-----CCchhhhhc--CcEEE
Q psy14735 132 SASDIDAAKNLLLKAKVIMFQ-GETPW---ETTLYCLSKLHVSLESRAKIIVNPSPAVY-----PLNPIVMIL--ADIIC 200 (340)
Q Consensus 132 ~~~~i~~~~~~~~~~~~v~i~-~~~~~---~~~~~~~~~a~~~~~~~~~v~~d~~~~~~-----~~~~~~l~~--~dil~ 200 (340)
.+++++. ..+-++.+++. |.... +.....++.+ ++.+.|+++||.+.-. +...+++.. .+++.
T Consensus 45 ~~eE~~e---~~kia~AL~INIGTL~~~~~~~m~~A~~~A---n~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~Ir 118 (265)
T COG2145 45 APEEVEE---FAKIADALLINIGTLSAERIQAMRAAIKAA---NESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIR 118 (265)
T ss_pred CHHHHHH---HHHhccceEEeeccCChHHHHHHHHHHHHH---HhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEe
Confidence 3444443 35666777775 44443 4456667777 9999999999975421 233455544 69999
Q ss_pred eCHHHHHHhhcCCC-----C---ChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcc
Q psy14735 201 INEQEAEIITDMKI-----N---NEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVG 272 (340)
Q Consensus 201 ~n~~E~~~l~~~~~-----~---~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaG 272 (340)
.|..|...|.|... + ...+..+.++.+.+.. ..+++-.|+.-++ .++. +.+.+.. -.--.-.-||+|
T Consensus 119 GN~sEI~~Lag~~~~~kGVDa~~~~~~~~~~a~~~A~~~-~~vvvvTG~vD~I-sdg~--~~~~i~n-G~pll~~ItGtG 193 (265)
T COG2145 119 GNASEIAALAGEAGGGKGVDAGDGAADAIEAAKKAAQKY-GTVVVVTGEVDYI-SDGT--RVVVIHN-GSPLLGKITGTG 193 (265)
T ss_pred ccHHHHHHHhcccccccccccccchhhHHHHHHHHHHHh-CcEEEEECCeeEE-EcCC--eEEEEEC-CCcHHhhhhccc
Confidence 99999999986542 2 2345566666655432 2444444554333 3332 4555544 222344668999
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHH
Q psy14735 273 DCFVGALAYYLCYFPQLP-LGEIILRS 298 (340)
Q Consensus 273 DaF~ag~~~~l~~~~g~~-~~~a~~~a 298 (340)
+...|.....+.- ..+ +-+|+.-|
T Consensus 194 Cllgav~aaF~av--~~d~~~~A~~~A 218 (265)
T COG2145 194 CLLGAVVAAFLAV--EKDPLLDAAAEA 218 (265)
T ss_pred cHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 8888887777766 556 45554443
No 88
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=97.17 E-value=0.0047 Score=58.79 Aligned_cols=185 Identities=14% Similarity=0.086 Sum_probs=86.9
Q ss_pred eecCChHHHHHHHHHhcCC-ceeEEEEecCChhhHHHHHHHhhhcCCccc--------ceEe----eCCCCCceEEEEEc
Q psy14735 48 QRFSGKGANQCVAAAKLRA-SVALISKLGNDKFGKSYLEELRKYNSINTK--------YIWL----LQDVTTGVCSKVIS 114 (340)
Q Consensus 48 ~~~GG~~~n~a~~l~~lG~-~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~--------~v~~----~~~~~t~~~~i~~~ 114 (340)
.+.||.+.-+|..|+.++. +|.+.+.++.. ...+.| + .+|-.= .+.. ..+.+.-.-+|+-.
T Consensus 92 ~r~GGnA~imAn~la~l~~~~Vil~~p~~sk----~~~~l~-~-~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~IlEy 165 (444)
T PF04587_consen 92 ERMGGNAGIMANRLANLEGCPVILYAPILSK----EQAELF-N-DNIYVPVVENGELKLIHPREAFKEDDEDDIHLILEY 165 (444)
T ss_dssp EEEESHHHHHHHHHCCTT-SEEEEE-SS--H----HHHTTS-S-SSEEEEEEETTEEEEEEGGGS-STT----EEEEEEE
T ss_pred cccCchHHHHHHHHHhCCCCEEEEecCcCCH----HHHHhc-c-cCcccccccCCcccccCchhccccCCccceEEEEEc
Confidence 3599999999999997755 44455545542 233344 2 222000 0000 00011111222222
Q ss_pred -----------CCCCeEEEEeCCcCCCCC--HHHHHHHHhhccCCcEEEEeCCCC-----------H---HHHHHHHHhc
Q psy14735 115 -----------NKGTHQTNIIPGANTYLS--ASDIDAAKNLLLKAKVIMFQGETP-----------W---ETTLYCLSKL 167 (340)
Q Consensus 115 -----------~~g~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~v~i~~~~~-----------~---~~~~~~~~~a 167 (340)
+..+|-++.++..+..+. ++..+.+.+...++|.++++|.-. . +...+.++.+
T Consensus 166 ~~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l 245 (444)
T PF04587_consen 166 KKGEKWGDITAPRANRFIVSSDPYNPRLSILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLL 245 (444)
T ss_dssp -TTEEETTEE-SS-EEEEEEE-SSGGGTS--HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHH
T ss_pred CCCCeecceecCcCceEEEecCCCCccccchHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhc
Confidence 233344443343343333 222233333356799999987321 1 1233334445
Q ss_pred hhcc-cCCceEEEeCCCCCC-----CCchhhhhcCcEEEeCHHHHHHhhcCCC-----------CCh--hhHHHHHHHHH
Q psy14735 168 HVSL-ESRAKIIVNPSPAVY-----PLNPIVMILADIICINEQEAEIITDMKI-----------NNE--EDLADCMEKLL 228 (340)
Q Consensus 168 ~~~~-~~~~~v~~d~~~~~~-----~~~~~~l~~~dil~~n~~E~~~l~~~~~-----------~~~--~~~~~~~~~l~ 228 (340)
+ ..+.+|-+....... ..+..+++++|.+-+|++|+..+..... +.. ..+.++..+|.
T Consensus 246 ---~~~~~~~iH~E~As~~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~~lg~~~~~~~~~~~~~v~~~~v~~~~~~L~ 322 (444)
T PF04587_consen 246 ---KSNPDIPIHLELASFADEELRKEILEKILPHVDSLGMNEQELANLLSVLGGPELSERIDSYPRVEVDQVLEALIWLL 322 (444)
T ss_dssp ---H-HTT-EEEEE----SSHHHHHHHHHHHGGGSSEEEEEHHHHHHHHHHTT-HHHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred ---cCCCCCceEEEeccccCHHHHHHHHHHhhccccccccCHHHHHHHHHHhCCCccccccccCCCccHHHHHHHHHHHH
Confidence 4 578888888765532 2445788999999999999998754221 111 12455566666
Q ss_pred hc-CCCEEEEEecC
Q psy14735 229 DM-KCNTVIITLGG 241 (340)
Q Consensus 229 ~~-g~~~vvvt~G~ 241 (340)
+. +++.+.+..=.
T Consensus 323 ~~~~l~RIhvHTl~ 336 (444)
T PF04587_consen 323 KEYGLTRIHVHTLA 336 (444)
T ss_dssp HHH--SEEEEEETT
T ss_pred HHcCCCEEEEEcch
Confidence 54 77766555433
No 89
>KOG3974|consensus
Probab=97.08 E-value=0.026 Score=48.60 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=97.9
Q ss_pred hccCCcEEEEeCCC-----CHHHHHHHHHhchhcccCCceEEEeCCCCCC-CCchh-hhhc--CcEEEeCHHHHHHhhcC
Q psy14735 142 LLLKAKVIMFQGET-----PWETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPI-VMIL--ADIICINEQEAEIITDM 212 (340)
Q Consensus 142 ~~~~~~~v~i~~~~-----~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~-~~~~~-~l~~--~dil~~n~~E~~~l~~~ 212 (340)
.+.+-+++++..-. ....+..+++++ ++.++|+++|..+-+- +...+ ++.. .-||++|..|+..|++.
T Consensus 98 ~L~RlhavVIGPGLGRdp~~~k~i~~iley~---~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~ 174 (306)
T KOG3974|consen 98 LLQRLHAVVIGPGLGRDPAILKEIAKILEYL---RGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDA 174 (306)
T ss_pred HHhheeEEEECCCCCCCHHHHHHHHHHHHHH---hcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHHH
Confidence 47788899996422 235567888899 9999999999987531 22222 2221 35889999999999986
Q ss_pred CCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcC--CCCC
Q psy14735 213 KINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYF--PQLP 290 (340)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~--~g~~ 290 (340)
...+.+...+ ...|...-....+|-.|+.-.++.... +....+. +-.....=|-||.+++.+...+... ...+
T Consensus 175 ~l~~~d~~~~-~~~L~~~l~nv~vvqKG~~D~ils~~~--ev~~~s~--eGs~kRcGGQGDiLaGsla~fl~w~k~~~~e 249 (306)
T KOG3974|consen 175 ELDKVDSHSQ-MQHLAAELMNVTVVQKGESDKILSPDS--EVRVCST--EGSLKRCGGQGDILAGSLATFLSWAKLLSGE 249 (306)
T ss_pred hhccccchHH-HHHHHHHhcCeEEEEecCCceeeCCCC--eeEEccC--CCCccccCCCcchhhhHHHHHHHHHHhccCC
Confidence 3322222222 222222112356777777666555444 4544444 2344566789999998776655330 0234
Q ss_pred HHHHHHHHHHHHHHHhcccC
Q psy14735 291 LGEIILRSCHVARQSLFNVG 310 (340)
Q Consensus 291 ~~~a~~~a~~~Aa~~~~~~g 310 (340)
..++...|..+++..++.-+
T Consensus 250 ~~~~~~~a~~a~s~~vr~a~ 269 (306)
T KOG3974|consen 250 QDSAAFLAAVAGSIMVRRAG 269 (306)
T ss_pred ccchhhhhhhhhHHHHHHHH
Confidence 44677777777776666544
No 90
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=96.40 E-value=0.13 Score=45.94 Aligned_cols=149 Identities=13% Similarity=0.129 Sum_probs=82.3
Q ss_pred ccCCcEEEEeCCC-CHHHHHHHHHhchhcccCC-ceEEEeCCCCC-CCCchhhh-hcCcEEEeCHHHHHHhhcCCCCC-h
Q psy14735 143 LLKAKVIMFQGET-PWETTLYCLSKLHVSLESR-AKIIVNPSPAV-YPLNPIVM-ILADIICINEQEAEIITDMKINN-E 217 (340)
Q Consensus 143 ~~~~~~v~i~~~~-~~~~~~~~~~~a~~~~~~~-~~v~~d~~~~~-~~~~~~~l-~~~dil~~n~~E~~~l~~~~~~~-~ 217 (340)
.+.++.+++..-+ ..+-..++++.+ -+.. +|+++|...-. ......+. ..--|++++.-|++.|++....+ .
T Consensus 99 ~~~~~avviGpGlG~~~~~~~~~~~~---l~~~~~p~ViDADaL~~la~~~~~~~~~~~VlTPH~gEf~rL~g~~~~~~~ 175 (284)
T COG0063 99 VERADAVVIGPGLGRDAEGQEALKEL---LSSDLKPLVLDADALNLLAELPDLLDERKVVLTPHPGEFARLLGTEVDEIE 175 (284)
T ss_pred hccCCEEEECCCCCCCHHHHHHHHHH---HhccCCCEEEeCcHHHHHHhCcccccCCcEEECCCHHHHHHhcCCcccccc
Confidence 5788999997322 222222333332 2222 89999987532 00111222 22389999999999999964433 2
Q ss_pred hhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccCCCcchHHHHHHHHHHHcCCCC-CHHHHHH
Q psy14735 218 EDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIESEGVGDCFVGALAYYLCYFPQL-PLGEIIL 296 (340)
Q Consensus 218 ~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdttGaGDaF~ag~~~~l~~~~g~-~~~~a~~ 296 (340)
.+-.++++.+.++.-..||++ |..-++...++ +.+..+. ...-.-+=|.||.+++-+..-|++ +. ++.+|+.
T Consensus 176 ~~r~~~a~~~a~~~~~vvVLK-G~~tvI~~~~g--~~~~n~~--G~~~ma~GGtGDvLaGii~alLAq--~~~~~~~Aa~ 248 (284)
T COG0063 176 VDRLEAARELAAKYGAVVVLK-GAVTVIADPDG--EVFVNPT--GNPGMATGGTGDVLAGIIGALLAQ--GPADPLEAAA 248 (284)
T ss_pred cchHHHHHHHHHHcCCEEEEe-CCCCEEEcCCC--cEEEcCC--CCHHhccCcchHHHHHHHHHHHhC--CCCCHHHHHH
Confidence 344566666666433344444 44444444232 3443333 223344559999988777666666 51 3556655
Q ss_pred HHHHH
Q psy14735 297 RSCHV 301 (340)
Q Consensus 297 ~a~~~ 301 (340)
.|+..
T Consensus 249 ~g~~~ 253 (284)
T COG0063 249 AGAWL 253 (284)
T ss_pred HHHHH
Confidence 55443
No 91
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=95.24 E-value=0.7 Score=43.99 Aligned_cols=176 Identities=16% Similarity=0.073 Sum_probs=90.2
Q ss_pred ceeeecCChHHHHHHHHHhcCC-ceeEEEEecCChhhHHHHHHHhhhcCC---------cccceEeeCCCCCceEEEE-E
Q psy14735 45 HFEQRFSGKGANQCVAAAKLRA-SVALISKLGNDKFGKSYLEELRKYNSI---------NTKYIWLLQDVTTGVCSKV-I 113 (340)
Q Consensus 45 ~~~~~~GG~~~n~a~~l~~lG~-~v~~~~~vG~D~~g~~i~~~l~~~~gi---------~~~~v~~~~~~~t~~~~i~-~ 113 (340)
....+.||.+..+|..++.+|. +|.+.+.+.... +..|-.-.+| +-+.++..-+-+.|..+-- .
T Consensus 100 ~~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k~-----~~~L~~d~~i~~p~~e~~~~~d~IHlIlEy~~G~~~~~~~ 174 (445)
T cd01938 100 WDELRMGGNAGLMANRLAGEGDLKVLLGVPQSSKL-----QAELFLDGPIVVPTFENLIEEDEIHLILEYPRGESWGDFV 174 (445)
T ss_pred CceEEeCChHHHHHHHHHhcCCceEEEecCCCcHH-----HHHhCCCCCeeecccccCCCCCccEEEEEcCCCCEecceE
Confidence 3458899999999999999999 877777755432 2222210111 1111111111222221111 2
Q ss_pred cCCCCeEEEEeCCcCC-CCCHHHHHHHHhhcc-CCcEEEEeCCCC-------HHHHHHHHHh----chhcccCCceEEEe
Q psy14735 114 SNKGTHQTNIIPGANT-YLSASDIDAAKNLLL-KAKVIMFQGETP-------WETTLYCLSK----LHVSLESRAKIIVN 180 (340)
Q Consensus 114 ~~~g~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~~v~i~~~~~-------~~~~~~~~~~----a~~~~~~~~~v~~d 180 (340)
-+..+|-++.....+. ...++.++.+ .+ ++|.++++|.-. .....+.++. +++-+. .+++-|.
T Consensus 175 aPraNRfI~~~d~~n~l~~~ee~~~~i---~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~-~i~iH~E 250 (445)
T cd01938 175 APRANRFIFHDDDNNPMLMREEFFSSI---LEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPP-LIPIHLE 250 (445)
T ss_pred cCCCCeEEEecCCcchhhhhHHHHHHH---hhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccc-cCcEEEE
Confidence 2333443332222222 1223333332 23 489999987321 1222222222 210022 3677776
Q ss_pred CCCCCC-----CCchhhhhcCcEEEeCHHHHHHhhcCC-----------C--CChhhHHHHHHHHHh
Q psy14735 181 PSPAVY-----PLNPIVMILADIICINEQEAEIITDMK-----------I--NNEEDLADCMEKLLD 229 (340)
Q Consensus 181 ~~~~~~-----~~~~~~l~~~dil~~n~~E~~~l~~~~-----------~--~~~~~~~~~~~~l~~ 229 (340)
...... .++..+++.+|-+=+|++|+..+.... . +...+..+++++|.+
T Consensus 251 ~As~~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~~~lg~~~~~~~~~~~~~~~v~~v~~~~~~l~~ 317 (445)
T cd01938 251 LASTVDEELREEILHEVVPYVDSLGLNEQELANLLQVLGGPHLSLASWNGGPPDVGAVLDILLWLLK 317 (445)
T ss_pred ecccccHHHHHHHHHHhcccccccccCHHHHHHHHHHhCCCccchhhhccCCCcHHHHHHHHHHHHH
Confidence 654432 344567899999999999999886431 1 222446666777765
No 92
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=94.04 E-value=3.9 Score=37.71 Aligned_cols=105 Identities=9% Similarity=0.089 Sum_probs=62.0
Q ss_pred CCHHHHHHHHhhccCCcEEEEeCCCC--------------HHHHHHHHHhchhccc-CCceEEEeCCCCC----C-CCch
Q psy14735 131 LSASDIDAAKNLLLKAKVIMFQGETP--------------WETTLYCLSKLHVSLE-SRAKIIVNPSPAV----Y-PLNP 190 (340)
Q Consensus 131 ~~~~~i~~~~~~~~~~~~v~i~~~~~--------------~~~~~~~~~~a~~~~~-~~~~v~~d~~~~~----~-~~~~ 190 (340)
+.++..+.+.+..++.|..+++|.-+ .+...+-++.. ++ .++++=+...... + .++.
T Consensus 211 v~~~~~~~l~~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~l---k~~~~irvHlEfas~~d~~irk~i~~ 287 (466)
T COG4809 211 VREEIREFLDEIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKAL---KDRENIRVHLEFASIQDRKIRKEILT 287 (466)
T ss_pred ecHHHHHHHHHHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHH---hccccceEEEEecccccHHHHHHHHH
Confidence 34555555555567789998886321 23344555555 55 5666665544321 1 3455
Q ss_pred hhhhcCcEEEeCHHHHHHhhcCCC-----------CChhhHHHHHHHHHh-cCCCEEEEE
Q psy14735 191 IVMILADIICINEQEAEIITDMKI-----------NNEEDLADCMEKLLD-MKCNTVIIT 238 (340)
Q Consensus 191 ~~l~~~dil~~n~~E~~~l~~~~~-----------~~~~~~~~~~~~l~~-~g~~~vvvt 238 (340)
.+++.++=+=+|+.|+..+.+... +...++-+.+-.|.+ .|++.+-|.
T Consensus 288 ~il~~v~SvGldE~ElA~vl~vlG~~eLa~~I~~~~~~~avieg~~~L~~e~~~e~i~vH 347 (466)
T COG4809 288 NILSIVYSVGLDEVELANVLNVLGYRELADRIISKDDIEAVIEGAMILLDELGLERIHVH 347 (466)
T ss_pred HHHhhhhhcCCCHHHHHHHHHhhChHHHHHhhhccccHHHHHHHHHHHHHhcCccEEEEE
Confidence 688889999999999886654321 123455555555554 467665444
No 93
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=83.46 E-value=13 Score=31.65 Aligned_cols=85 Identities=12% Similarity=0.086 Sum_probs=59.9
Q ss_pred CCcEEEEeCC---CCHHHHHHHHHhchhcccCCceEEEeCCCCCC-CCchhhhhcCcEEE-----eCHHHHHHhhcCCCC
Q psy14735 145 KAKVIMFQGE---TPWETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADIIC-----INEQEAEIITDMKIN 215 (340)
Q Consensus 145 ~~~~v~i~~~---~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~-~~~~~~l~~~dil~-----~n~~E~~~l~~~~~~ 215 (340)
....|.++|. +..+.+.++++.+ ++.|+.+.+|..+... +.+..+++.+|.+. ++.+..+.++|..
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~---k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~-- 112 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRL---RLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMN-- 112 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHH---HHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCC--
Confidence 3467777763 3478889999999 9999999999987653 34556777777654 4566667788853
Q ss_pred ChhhHHHHHHHHHhcCCCEE
Q psy14735 216 NEEDLADCMEKLLDMKCNTV 235 (340)
Q Consensus 216 ~~~~~~~~~~~l~~~g~~~v 235 (340)
.+.+.+-++.+.+.|....
T Consensus 113 -~~~il~nl~~l~~~g~~v~ 131 (213)
T PRK10076 113 -LPRVLENLRLLVSEGVNVI 131 (213)
T ss_pred -HHHHHHHHHHHHhCCCcEE
Confidence 3566677777777765443
No 94
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=81.31 E-value=32 Score=30.33 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=60.8
Q ss_pred cCCcEEEEeCCC---CHHHHHHHHHhchhcccCCceEEEeCCCCCC-CCchhhhhcCcEEEe-----CHHHHHHhhcCCC
Q psy14735 144 LKAKVIMFQGET---PWETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADIICI-----NEQEAEIITDMKI 214 (340)
Q Consensus 144 ~~~~~v~i~~~~---~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~-~~~~~~l~~~dil~~-----n~~E~~~l~~~~~ 214 (340)
...+.|.++|.- ..+...++++.+ ++.|+++.+|..+... +....+++..|.+.+ +.+-.+.+++...
T Consensus 82 ~~~~gvt~SGGEP~~q~e~~~~~~~~a---ke~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~ 158 (260)
T COG1180 82 ESGGGVTFSGGEPTLQAEFALDLLRAA---KERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDELYRKLTGADN 158 (260)
T ss_pred CCCCEEEEECCcchhhHHHHHHHHHHH---HHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCCc
Confidence 367888887643 368889999999 9999999999988754 233466777776653 3334777777642
Q ss_pred CChhhHHHHHHHHHhcCCCE
Q psy14735 215 NNEEDLADCMEKLLDMKCNT 234 (340)
Q Consensus 215 ~~~~~~~~~~~~l~~~g~~~ 234 (340)
+.+.+.++.+.++|+..
T Consensus 159 ---~~vl~~~~~l~~~g~~v 175 (260)
T COG1180 159 ---EPVLENLELLADLGVHV 175 (260)
T ss_pred ---HHHHHHHHHHHcCCCeE
Confidence 66778888888766543
No 95
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=67.78 E-value=42 Score=29.07 Aligned_cols=76 Identities=16% Similarity=0.099 Sum_probs=49.2
Q ss_pred CcCCCCCHHHHHHHHhhccCCcEEEEeCCC--CHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEE---
Q psy14735 126 GANTYLSASDIDAAKNLLLKAKVIMFQGET--PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC--- 200 (340)
Q Consensus 126 ~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~--~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~--- 200 (340)
.++...+.+.++... ....|.++++|+. ..+...++++.+ ++..+|+++-|+... .+-+++|.+.
T Consensus 15 DP~k~~~~~~~~~~~--~~gtdai~vGGS~~vt~~~~~~~v~~i---k~~~lPvilfp~~~~-----~i~~~aDa~l~~s 84 (232)
T PRK04169 15 DPDKPLPDEALEAIC--ESGTDAIIVGGSDGVTEENVDELVKAI---KEYDLPVILFPGNIE-----GISPGADAYLFPS 84 (232)
T ss_pred CCCCCCCHHHHHHHH--hcCCCEEEEcCCCccchHHHHHHHHHH---hcCCCCEEEeCCCcc-----ccCcCCCEEEEEE
Confidence 455555555554432 4578999999876 456788888888 778899999887653 4445566443
Q ss_pred -eCHHHHHHhhc
Q psy14735 201 -INEQEAEIITD 211 (340)
Q Consensus 201 -~n~~E~~~l~~ 211 (340)
+|-+....+.|
T Consensus 85 vlNs~~~~~iig 96 (232)
T PRK04169 85 VLNSRNPYWIIG 96 (232)
T ss_pred EecCCCcchHhh
Confidence 34444444443
No 96
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=66.68 E-value=69 Score=27.49 Aligned_cols=34 Identities=6% Similarity=0.086 Sum_probs=24.0
Q ss_pred hccCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEE
Q psy14735 142 LLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIV 179 (340)
Q Consensus 142 ~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~ 179 (340)
.++++|+++.+.. ..+....+.+.+ +++++|++.
T Consensus 108 ~~~~~DvVi~~~d-~~~~r~~l~~~~---~~~~ip~i~ 141 (228)
T cd00757 108 LIAGYDLVLDCTD-NFATRYLINDAC---VKLGKPLVS 141 (228)
T ss_pred HHhCCCEEEEcCC-CHHHHHHHHHHH---HHcCCCEEE
Confidence 3677898887654 345666677777 788888764
No 97
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=65.75 E-value=59 Score=27.73 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=56.2
Q ss_pred ccCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeCCCCC-CCCchhhh--hcCcEE--EeCHHHHHHhhcCCCCCh
Q psy14735 143 LLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAV-YPLNPIVM--ILADII--CINEQEAEIITDMKINNE 217 (340)
Q Consensus 143 ~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~-~~~~~~~l--~~~dil--~~n~~E~~~l~~~~~~~~ 217 (340)
-..+|++.+.+-.+.+++...++.+ +++|..+.+|+-+.. +......+ -.+|++ +.+.+.-. .|....
T Consensus 78 ~aGAd~~tV~g~A~~~TI~~~i~~A---~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~--~G~~~~-- 150 (217)
T COG0269 78 EAGADWVTVLGAADDATIKKAIKVA---KEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQA--AGKSWG-- 150 (217)
T ss_pred HcCCCEEEEEecCCHHHHHHHHHHH---HHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhh--cCCCcc--
Confidence 4579999999999999999999999 999999999986553 11111222 234544 44443222 454210
Q ss_pred hhHHHHHHHHHhcCCCEEEEEecC
Q psy14735 218 EDLADCMEKLLDMKCNTVIITLGG 241 (340)
Q Consensus 218 ~~~~~~~~~l~~~g~~~vvvt~G~ 241 (340)
.+..+..+++.++| -.+.||-|=
T Consensus 151 ~~~l~~ik~~~~~g-~~vAVaGGI 173 (217)
T COG0269 151 EDDLEKIKKLSDLG-AKVAVAGGI 173 (217)
T ss_pred HHHHHHHHHhhccC-ceEEEecCC
Confidence 23344555566555 356666553
No 98
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=64.50 E-value=78 Score=25.90 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=64.7
Q ss_pred cCChhhHHHHHHHhhhcCCcccceEee----CCCCCceEEEEEcCCCCeEEEEeCCcC------CCCCHHHH-----HHH
Q psy14735 75 GNDKFGKSYLEELRKYNSINTKYIWLL----QDVTTGVCSKVISNKGTHQTNIIPGAN------TYLSASDI-----DAA 139 (340)
Q Consensus 75 G~D~~g~~i~~~l~~~~gi~~~~v~~~----~~~~t~~~~i~~~~~g~~~~~~~~~~~------~~~~~~~i-----~~~ 139 (340)
|+...-..+.+.|++ .|.+.-++... .+.++|..++-++ +|++..+.+.+.. ..+..+.+ +.+
T Consensus 17 GKtTl~~ki~e~L~~-~g~kvgGf~t~EVR~gGkR~GF~Ivdl~-tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al 94 (179)
T COG1618 17 GKTTLVLKIAEKLRE-KGYKVGGFITPEVREGGKRIGFKIVDLA-TGEEGILARVGFSRPRVGKYGVNVEGLEEIAIPAL 94 (179)
T ss_pred cHHHHHHHHHHHHHh-cCceeeeEEeeeeecCCeEeeeEEEEcc-CCceEEEEEcCCCCcccceEEeeHHHHHHHhHHHH
Confidence 344555667888888 87777665444 3455666544333 5777666554331 11233333 333
Q ss_pred HhhccCCcEEEEeCCCC----HHHHHHHHHhchhcccCCceEEEeCCCCCC-CCchhhhhcCcEEE
Q psy14735 140 KNLLLKAKVIMFQGETP----WETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADIIC 200 (340)
Q Consensus 140 ~~~~~~~~~v~i~~~~~----~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~-~~~~~~l~~~dil~ 200 (340)
..+++.+|+++++=--| .....+.++.+ -+.+.|+++...-..+ ..+..+.+.-.++.
T Consensus 95 ~rA~~~aDvIIIDEIGpMElks~~f~~~ve~v---l~~~kpliatlHrrsr~P~v~~ik~~~~v~v 157 (179)
T COG1618 95 RRALEEADVIIIDEIGPMELKSKKFREAVEEV---LKSGKPLIATLHRRSRHPLVQRIKKLGGVYV 157 (179)
T ss_pred HHHhhcCCEEEEecccchhhccHHHHHHHHHH---hcCCCcEEEEEecccCChHHHHhhhcCCEEE
Confidence 44567789999973222 22234455555 5566777765543322 13334444444444
No 99
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=63.69 E-value=34 Score=27.30 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHhhc-cCCcEEEE-eCCCCHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHH
Q psy14735 130 YLSASDIDAAKNLL-LKAKVIMF-QGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAE 207 (340)
Q Consensus 130 ~~~~~~i~~~~~~~-~~~~~v~i-~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~ 207 (340)
.++.+.+....... ...+.|.+ +|+...+.+.++++.+ ++.|.++.++.....++...++++..|+++...-+.+
T Consensus 45 ~lt~eel~~~I~~~~~~~~gVt~SGGEl~~~~l~~ll~~l---k~~Gl~i~l~Tg~~~~~~~~~il~~iD~l~~g~y~~~ 121 (147)
T TIGR02826 45 KLTPEYLTKTLDKYRSLISCVLFLGGEWNREALLSLLKIF---KEKGLKTCLYTGLEPKDIPLELVQHLDYLKTGRWIHT 121 (147)
T ss_pred CCCHHHHHHHHHHhCCCCCEEEEechhcCHHHHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHHhCCEEEEChHHHH
Confidence 45655554332222 22345555 4675567788899999 8889999988765443445678899999998875443
No 100
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=61.59 E-value=97 Score=29.65 Aligned_cols=68 Identities=21% Similarity=0.029 Sum_probs=37.9
Q ss_pred CCHHHHHHHHhhccCCcEEEEeCCCCHH----HHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCH
Q psy14735 131 LSASDIDAAKNLLLKAKVIMFQGETPWE----TTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINE 203 (340)
Q Consensus 131 ~~~~~i~~~~~~~~~~~~v~i~~~~~~~----~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~ 203 (340)
++++.++... -++.++|++.....+- -+.++.+.+ +++|+++++|..-...-....+-..+||+.-+.
T Consensus 135 ~d~~~l~~~I--~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA---~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~ 206 (432)
T PRK06702 135 LTADEIVALA--NDKTKLVYAESLGNPAMNVLNFKEFSDAA---KELEVPFIVDNTLATPYLCQAFEHGANIIVHST 206 (432)
T ss_pred CCHHHHHHhC--CcCCeEEEEEcCCCccccccCHHHHHHHH---HHcCCEEEEECCCCchhhCChhhcCCCEEEEcc
Confidence 4445555431 2456677775433222 367788888 889999999875321112223334577665544
No 101
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=58.66 E-value=66 Score=27.79 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=42.2
Q ss_pred ccCCcEEEEeCCCC--HHHHHHHHHhchhcc-cCCceEEEeCCCCCCCCchhhhhcCcEEE----eCHHHHHHhhc
Q psy14735 143 LLKAKVIMFQGETP--WETTLYCLSKLHVSL-ESRAKIIVNPSPAVYPLNPIVMILADIIC----INEQEAEIITD 211 (340)
Q Consensus 143 ~~~~~~v~i~~~~~--~~~~~~~~~~a~~~~-~~~~~v~~d~~~~~~~~~~~~l~~~dil~----~n~~E~~~l~~ 211 (340)
-...|.+.++|+.. .+...++++.+ + ..++|+++-|+... .+.+++|.++ +|-.+...+.|
T Consensus 39 ~~GTDaImIGGS~gvt~~~~~~~v~~i---k~~~~lPvilfP~~~~-----~is~~aDavff~svLNS~n~~~i~g 106 (240)
T COG1646 39 EAGTDAIMIGGSDGVTEENVDNVVEAI---KERTDLPVILFPGSPS-----GISPYADAVFFPSVLNSDNPYWIVG 106 (240)
T ss_pred HcCCCEEEECCcccccHHHHHHHHHHH---HhhcCCCEEEecCChh-----ccCccCCeEEEEEEecCCCcccccc
Confidence 35689999998763 46678888888 6 88999999988653 4445666444 45555444444
No 102
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=57.45 E-value=51 Score=27.12 Aligned_cols=80 Identities=14% Similarity=0.023 Sum_probs=50.6
Q ss_pred CCcEEEEeCCC-CHHHHHHHHHhchhcccCCceEEEeCCCCC---CCCchhhhhcCcEEEeCHHHHHH---hhcCCCCCh
Q psy14735 145 KAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAV---YPLNPIVMILADIICINEQEAEI---ITDMKINNE 217 (340)
Q Consensus 145 ~~~~v~i~~~~-~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~---~~~~~~~l~~~dil~~n~~E~~~---l~~~~~~~~ 217 (340)
.++++...|+. +.+.+..+-+.. ++.|+.|+.||...- +..+...++.+.-+++...++.. -.|..--++
T Consensus 22 d~~~I~T~Gs~i~~~~i~~i~~~~---~~rgVIIfTDpD~~GekIRk~i~~~vp~~khafi~~~~a~~~~~~iGVE~As~ 98 (174)
T TIGR00334 22 DVDVIETNGSALKDETINLIKKAQ---KKQGVIILTDPDFPGEKIRKKIEQHLPGYENCFIPKHLAKPNKKKIGVEEASV 98 (174)
T ss_pred CceEEEECCCccCHHHHHHHHHHh---hcCCEEEEeCCCCchHHHHHHHHHHCCCCeEEeeeHHhcCcCCCCcccCCCCH
Confidence 47888888875 666666555566 788988888997553 33444556667778888887642 134433345
Q ss_pred hhHHHHHHHH
Q psy14735 218 EDLADCMEKL 227 (340)
Q Consensus 218 ~~~~~~~~~l 227 (340)
+++.++...+
T Consensus 99 e~I~~AL~~~ 108 (174)
T TIGR00334 99 EAIIAALENV 108 (174)
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 103
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=56.84 E-value=84 Score=23.76 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEcc
Q psy14735 218 EDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITV 259 (340)
Q Consensus 218 ~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~ 259 (340)
.+..++++.+.++|++.+.+|.....-+....+ .....+.
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad--~~l~~~~ 100 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPNSTLAKLSD--VVLDLPV 100 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCC--EEEECCC
Confidence 577888888999999999999876665544333 3444444
No 104
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=56.01 E-value=60 Score=28.69 Aligned_cols=104 Identities=12% Similarity=0.064 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHhhccCCcEEEEeCCC-CHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHH
Q psy14735 130 YLSASDIDAAKNLLLKAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEI 208 (340)
Q Consensus 130 ~~~~~~i~~~~~~~~~~~~v~i~~~~-~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~ 208 (340)
.++.+.++.+.+.+.+++-|++-|.. +......+.... ...|.++...............+..-|++++= .
T Consensus 112 ~~~~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l---~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~i-----S 183 (278)
T PRK11557 112 VNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKL---MKIGINAVAERDMHALLATVQALSPDDLLLAI-----S 183 (278)
T ss_pred hcCHHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHH---hhCCCeEEEcCChHHHHHHHHhCCCCCEEEEE-----c
Confidence 34566666666677788777776543 334445555555 66677765522111000011123344544431 1
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceE
Q psy14735 209 ITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVV 245 (340)
Q Consensus 209 l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~ 245 (340)
..|. ..+..++++...++|++.++||.....-+
T Consensus 184 ~sg~----~~~~~~~~~~ak~~ga~iI~IT~~~~s~l 216 (278)
T PRK11557 184 YSGE----RRELNLAADEALRVGAKVLAITGFTPNAL 216 (278)
T ss_pred CCCC----CHHHHHHHHHHHHcCCCEEEEcCCCCCch
Confidence 2232 15677888888889999999998655443
No 105
>PRK15482 transcriptional regulator MurR; Provisional
Probab=54.46 E-value=50 Score=29.37 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHhhccCCcEEEEeCCC-CHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHH
Q psy14735 130 YLSASDIDAAKNLLLKAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEI 208 (340)
Q Consensus 130 ~~~~~~i~~~~~~~~~~~~v~i~~~~-~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~ 208 (340)
.++.+.++.+.+.+.+++-+++-|.. +..+...+.... ...|.++.+.............+..-|++++= .
T Consensus 119 ~id~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l---~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~i-----S 190 (285)
T PRK15482 119 LFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKL---MKIGYRVACEADTHVQATVSQALKKGDVQIAI-----S 190 (285)
T ss_pred hcCHHHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHH---HhCCCeeEEeccHhHHHHHHhcCCCCCEEEEE-----e
Confidence 45667777777778888877775543 333444444455 55666665532211100011223334554431 1
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceE
Q psy14735 209 ITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVV 245 (340)
Q Consensus 209 l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~ 245 (340)
..|.. .+..++++...++|++.+.||.....-+
T Consensus 191 ~sg~t----~~~~~~~~~a~~~g~~iI~IT~~~~s~l 223 (285)
T PRK15482 191 YSGSK----KEIVLCAEAARKQGATVIAITSLADSPL 223 (285)
T ss_pred CCCCC----HHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 12322 5677888888899999999998655443
No 106
>KOG4184|consensus
Probab=54.40 E-value=27 Score=32.04 Aligned_cols=160 Identities=14% Similarity=0.120 Sum_probs=77.3
Q ss_pred ceeeecCChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcC--CcccceEee----CCCCCceEEEEEcCCCC
Q psy14735 45 HFEQRFSGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNS--INTKYIWLL----QDVTTGVCSKVISNKGT 118 (340)
Q Consensus 45 ~~~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~g--i~~~~v~~~----~~~~t~~~~i~~~~~g~ 118 (340)
....+.||.+.-+|.-+.-=| .+.++|..|.-......-.+.+- .| |--+.+++. .+..-|-+ +.+...
T Consensus 137 R~~~~mGGNA~LMA~R~~~~~-~~~LlG~~~~R~~~~L~P~~~R~-~~~~I~~DdiHlILEYK~Gd~~G~~---VAP~an 211 (478)
T KOG4184|consen 137 RINWYMGGNAPLMAVRFFMEG-AQVLLGAHMSRKLRPLLPKEIRL-AGDEIPNDDIHLILEYKAGDKWGPY---VAPRAN 211 (478)
T ss_pred hhhhhccCCchHHHHHHHhcc-ceeeecccccchhccccchhhhc-ccCcCcCCceEEEEEeccCCccccc---cccccc
Confidence 345688997766666665545 78899998875433333333222 22 111111111 11111111 112233
Q ss_pred eEEEEeCCcCCCCCHHHHHHHHhhcc--CCcEEEEeCCCCH-----HHHHHHHHhch---hcccCCceEEEeCCCCC---
Q psy14735 119 HQTNIIPGANTYLSASDIDAAKNLLL--KAKVIMFQGETPW-----ETTLYCLSKLH---VSLESRAKIIVNPSPAV--- 185 (340)
Q Consensus 119 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~v~i~~~~~~-----~~~~~~~~~a~---~~~~~~~~v~~d~~~~~--- 185 (340)
|-+...+.-+ -....++.+.+.++ +.|+++++|--.- +...+-++..+ ...-.|+|+-+......
T Consensus 212 R~I~~~D~~n--~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~~~~~ 289 (478)
T KOG4184|consen 212 RYILHNDRNN--PHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASMTNRE 289 (478)
T ss_pred ceeeecCCCC--hHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHHHHHH
Confidence 3322211111 11223444444443 5799999884331 11111111110 00113555555544322
Q ss_pred --CCCchhhhhcCcEEEeCHHHHHHhhc
Q psy14735 186 --YPLNPIVMILADIICINEQEAEIITD 211 (340)
Q Consensus 186 --~~~~~~~l~~~dil~~n~~E~~~l~~ 211 (340)
..+...+++++|=|=+|++|+..|..
T Consensus 290 l~~~i~h~VlPyVdSLGlNEQEL~fL~q 317 (478)
T KOG4184|consen 290 LMSSIVHQVLPYVDSLGLNEQELLFLTQ 317 (478)
T ss_pred HHHHHHHHhhhhccccCCCHHHHHHHHH
Confidence 13456789999999999999998864
No 107
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=52.19 E-value=23 Score=22.14 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=24.6
Q ss_pred EeCHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEE
Q psy14735 200 CINEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVI 236 (340)
Q Consensus 200 ~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vv 236 (340)
+++.+|+..|+|.+ -....++.|.++|+..++
T Consensus 2 fLT~~El~elTG~k-----~~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 2 FLTDEELQELTGYK-----RPSKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCCHHHHHHHHCCC-----CHHHHHHHHHHCCCeeEE
Confidence 46789999999984 566677888888876554
No 108
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=51.81 E-value=56 Score=29.16 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHhhccCCcEEEE-eCCCCHHHHHHHHHhchhcccCCceEEE--eCCCCCCCCchhhhhcCcEEEeCHHH
Q psy14735 129 TYLSASDIDAAKNLLLKAKVIMF-QGETPWETTLYCLSKLHVSLESRAKIIV--NPSPAVYPLNPIVMILADIICINEQE 205 (340)
Q Consensus 129 ~~~~~~~i~~~~~~~~~~~~v~i-~~~~~~~~~~~~~~~a~~~~~~~~~v~~--d~~~~~~~~~~~~l~~~dil~~n~~E 205 (340)
..++++.++...+.+.+++-+++ +...+..+...+.... ...|.++.. |..... .....+..-|+++.=
T Consensus 113 ~~l~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l---~~ig~~~~~~~d~~~~~--~~~~~~~~~Dv~i~i--- 184 (281)
T COG1737 113 NLLDEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKL---MRIGLNVVALSDTHGQL--MQLALLTPGDVVIAI--- 184 (281)
T ss_pred HhcCHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHH---HHcCCceeEecchHHHH--HHHHhCCCCCEEEEE---
Confidence 45678888887788888885554 4344555566666666 667777665 333332 122344555655531
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHhcCCCEEEEEec
Q psy14735 206 AEIITDMKINNEEDLADCMEKLLDMKCNTVIITLG 240 (340)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G 240 (340)
.+.|.. .++.++++...++|++.|.+|.-
T Consensus 185 --S~sG~t----~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 185 --SFSGYT----REIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred --eCCCCc----HHHHHHHHHHHHCCCcEEEEcCC
Confidence 123432 57788888899999999999974
No 109
>COG1159 Era GTPase [General function prediction only]
Probab=51.68 E-value=1.3e+02 Score=27.06 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=56.2
Q ss_pred CCceeEEEEecCChhhHH-HHHHHhhhcCCcccceEee-CCCCCceEEEEEcCCCCeEEEEeCCcCC-----CCCHHHHH
Q psy14735 65 RASVALISKLGNDKFGKS-YLEELRKYNSINTKYIWLL-QDVTTGVCSKVISNKGTHQTNIIPGANT-----YLSASDID 137 (340)
Q Consensus 65 G~~v~~~~~vG~D~~g~~-i~~~l~~~~gi~~~~v~~~-~~~~t~~~~i~~~~~g~~~~~~~~~~~~-----~~~~~~i~ 137 (340)
+.++.|++.+|.-..|+. +.+.|-. ..|. -+... ..++....-+..+ ++.++++...+.. .+..-..+
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G-~Kis--IvS~k~QTTR~~I~GI~t~--~~~QiIfvDTPGih~pk~~l~~~m~~ 77 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVG-QKIS--IVSPKPQTTRNRIRGIVTT--DNAQIIFVDTPGIHKPKHALGELMNK 77 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhc-CceE--eecCCcchhhhheeEEEEc--CCceEEEEeCCCCCCcchHHHHHHHH
Confidence 457789999998878886 5666644 4443 22111 1223333333334 4555555554432 22233334
Q ss_pred HHHhhccCCcEEEE--eCCC-CHHHHHHHHHhchhcccCCceEE
Q psy14735 138 AAKNLLLKAKVIMF--QGET-PWETTLYCLSKLHVSLESRAKII 178 (340)
Q Consensus 138 ~~~~~~~~~~~v~i--~~~~-~~~~~~~~~~~a~~~~~~~~~v~ 178 (340)
.+...++++|++++ ++.- ...-...+++.. ++...|++
T Consensus 78 ~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~l---k~~~~pvi 118 (298)
T COG1159 78 AARSALKDVDLILFVVDADEGWGPGDEFILEQL---KKTKTPVI 118 (298)
T ss_pred HHHHHhccCcEEEEEEeccccCCccHHHHHHHH---hhcCCCeE
Confidence 45567899999766 3322 123345556666 55444544
No 110
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=49.34 E-value=1.2e+02 Score=26.61 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=54.4
Q ss_pred HHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHH------Hhhc--CC-------CCChhhHH
Q psy14735 157 WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAE------IITD--MK-------INNEEDLA 221 (340)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~------~l~~--~~-------~~~~~~~~ 221 (340)
.+.+..+.+.+ ++.|++++-++.... ....+.+.+|++.+-..++. .+.+ .. ..+.+++.
T Consensus 65 ~~gl~~L~~~~---~~~Gl~~~Tev~d~~--~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~ 139 (250)
T PRK13397 65 LQGIRYLHEVC---QEFGLLSVSEIMSER--QLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYL 139 (250)
T ss_pred HHHHHHHHHHH---HHcCCCEEEeeCCHH--HHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHH
Confidence 35566667777 888999988776543 34455667888886554433 2222 11 23678999
Q ss_pred HHHHHHHhcCCCEEEEEe-cCCc
Q psy14735 222 DCMEKLLDMKCNTVIITL-GGSG 243 (340)
Q Consensus 222 ~~~~~l~~~g~~~vvvt~-G~~G 243 (340)
.+++++.+.|.+.+++.. |..+
T Consensus 140 ~A~e~i~~~Gn~~i~L~eRg~~~ 162 (250)
T PRK13397 140 GALSYLQDTGKSNIILCERGVRG 162 (250)
T ss_pred HHHHHHHHcCCCeEEEEccccCC
Confidence 999999988887777775 6533
No 111
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=44.94 E-value=1.1e+02 Score=26.44 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCceeEEEEecCChhhHHHHHHH-hhhcCCcccceEeeCCCCC-ceEEEEEcCCCCeEEEEeCC---cC
Q psy14735 54 GANQCVAAAKLRASVALISKLGNDKFGKSYLEEL-RKYNSINTKYIWLLQDVTT-GVCSKVISNKGTHQTNIIPG---AN 128 (340)
Q Consensus 54 ~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l-~~~~gi~~~~v~~~~~~~t-~~~~i~~~~~g~~~~~~~~~---~~ 128 (340)
.+|.+.+|+++|.+|.++-+ +.|-.=++.+ --+..|=.+.+.+..+.-+ .+. ..-|+.-++.++.-.. ..
T Consensus 20 tAnig~aLA~~GkKv~liD~----DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QA-LIkDKr~~nL~lLPAsQtrdK 94 (272)
T COG2894 20 TANIGTALAQLGKKVVLIDF----DIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQA-LIKDKRLENLFLLPASQTRDK 94 (272)
T ss_pred hHHHHHHHHHcCCeEEEEec----CcCchhhhhhhcccceeeeeehhhhcCccchhhH-hhccccCCceEecccccccCc
Confidence 46999999999999999876 1232222221 1002233334433333222 333 2235555555432211 13
Q ss_pred CCCCHHHHHHHHhhcc--CCcEEEEeCCCCHHH
Q psy14735 129 TYLSASDIDAAKNLLL--KAKVIMFQGETPWET 159 (340)
Q Consensus 129 ~~~~~~~i~~~~~~~~--~~~~v~i~~~~~~~~ 159 (340)
..++++.++...+.++ ..|+++++.+..-|.
T Consensus 95 dalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~ 127 (272)
T COG2894 95 DALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQ 127 (272)
T ss_pred ccCCHHHHHHHHHHHHhcCCCEEEecCcchHHH
Confidence 5688888887665554 589999987654343
No 112
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=44.22 E-value=2.6e+02 Score=26.73 Aligned_cols=57 Identities=9% Similarity=-0.069 Sum_probs=34.7
Q ss_pred cCCcEEEEeCCCCH----HHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCH
Q psy14735 144 LKAKVIMFQGETPW----ETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINE 203 (340)
Q Consensus 144 ~~~~~v~i~~~~~~----~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~ 203 (340)
++.++|++.....+ .-+.++.+.+ +++|+++++|...........+--.+|++..+.
T Consensus 148 ~~TklV~~e~~~np~g~v~Di~~I~~la---~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~ 208 (433)
T PRK08134 148 PNTRLLFGETLGNPGLEVLDIPTVAAIA---HEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSA 208 (433)
T ss_pred CCCeEEEEECCCcccCcccCHHHHHHHH---HHcCCEEEEECCCcccccCCchhcCCCEEEecc
Confidence 45677777543222 2267788888 889999999975432111223333588887763
No 113
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.99 E-value=54 Score=23.84 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=30.2
Q ss_pred hccCCcEEEE-eCCCCHHHHHHHHHhchhcccCCceEEEeC
Q psy14735 142 LLLKAKVIMF-QGETPWETTLYCLSKLHVSLESRAKIIVNP 181 (340)
Q Consensus 142 ~~~~~~~v~i-~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~ 181 (340)
.++++|+|++ .+.++-.....+-+.| ++.++|+++--
T Consensus 45 ~i~~aD~VIv~t~~vsH~~~~~vk~~a---kk~~ip~~~~~ 82 (97)
T PF10087_consen 45 KIKKADLVIVFTDYVSHNAMWKVKKAA---KKYGIPIIYSR 82 (97)
T ss_pred hcCCCCEEEEEeCCcChHHHHHHHHHH---HHcCCcEEEEC
Confidence 4788999766 5667788888889999 99999998754
No 114
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=43.16 E-value=1.8e+02 Score=23.64 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHhhccCCcEEEEeCCC-CHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHH
Q psy14735 130 YLSASDIDAAKNLLLKAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEI 208 (340)
Q Consensus 130 ~~~~~~i~~~~~~~~~~~~v~i~~~~-~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~ 208 (340)
.++++.++.+.+.+.+++-|++.|.. +.-....+.... ...|.++.+-.... ...+..-|+++.= .
T Consensus 17 ~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l---~~~g~~~~~~~~~~-----~~~~~~~D~vI~i-----S 83 (179)
T cd05005 17 KIDEEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRL---MHLGLNVYVVGETT-----TPAIGPGDLLIAI-----S 83 (179)
T ss_pred hcCHHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHH---HhCCCeEEEeCCCC-----CCCCCCCCEEEEE-----c
Confidence 46677777777777777777776543 333344445455 55566665522111 1223334444320 1
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCc
Q psy14735 209 ITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG 243 (340)
Q Consensus 209 l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G 243 (340)
..|. ..+..++++...++|++.+.+|.-...
T Consensus 84 ~sG~----t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 84 GSGE----TSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred CCCC----cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 1222 156678888888899999999975443
No 115
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=42.09 E-value=3e+02 Score=25.79 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=53.7
Q ss_pred ceeEEEEecCChhhHHHHH-HHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccC
Q psy14735 67 SVALISKLGNDKFGKSYLE-ELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLK 145 (340)
Q Consensus 67 ~v~~~~~vG~D~~g~~i~~-~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 145 (340)
++.++|.-|- .|+.+++ .|.+ ..+....+........+.....+ .|+.. ...+..+.+ .+++
T Consensus 3 ~VAIVGATG~--vG~ell~llL~~-~~f~~~~l~~~ss~~sg~~~~~f--~g~~~--------~v~~~~~~~----~~~~ 65 (369)
T PRK06598 3 KVGFVGWRGM--VGSVLMQRMVEE-NDFDLIEPVFFSTSQAGGAAPSF--GGKEG--------TLQDAFDID----ALKK 65 (369)
T ss_pred EEEEEeCCCH--HHHHHHHHHHhC-CCCCcCcEEEecchhhCCccccc--CCCcc--------eEEecCChh----HhcC
Confidence 4566777664 7899998 7777 66654433332222222221111 11110 001101111 2457
Q ss_pred CcEEEEeCCCCHHHHHHHHHhchhcccCCce-EEEeCCCCCC
Q psy14735 146 AKVIMFQGETPWETTLYCLSKLHVSLESRAK-IIVNPSPAVY 186 (340)
Q Consensus 146 ~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~-v~~d~~~~~~ 186 (340)
+|+++++. +.++..++...+ .+.|.+ +++|.++.++
T Consensus 66 ~Divf~a~--~~~~s~~~~~~~---~~aG~~~~VID~Ss~fR 102 (369)
T PRK06598 66 LDIIITCQ--GGDYTNEVYPKL---RAAGWQGYWIDAASTLR 102 (369)
T ss_pred CCEEEECC--CHHHHHHHHHHH---HhCCCCeEEEECChHHh
Confidence 89888864 457788888888 788875 7888887653
No 116
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=41.82 E-value=1.9e+02 Score=23.48 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHhhccCCcEEEEeCCCC-HHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHH
Q psy14735 130 YLSASDIDAAKNLLLKAKVIMFQGETP-WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEI 208 (340)
Q Consensus 130 ~~~~~~i~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~ 208 (340)
.+++++++.+.+.+.+++-+++.|... .-....+.... ...|..+.+-.... ...+..-|++++=-
T Consensus 14 ~l~~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l---~~~g~~~~~~~~~~-----~~~~~~~Dv~I~iS----- 80 (179)
T TIGR03127 14 RIDEEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRL---MHLGFNVYVVGETT-----TPSIKKGDLLIAIS----- 80 (179)
T ss_pred hCCHHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHH---HhCCCeEEEeCCcc-----cCCCCCCCEEEEEe-----
Confidence 466777877777787788887766433 23344444545 55566655422211 12233334433200
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCc
Q psy14735 209 ITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSG 243 (340)
Q Consensus 209 l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G 243 (340)
..|.. .+..++++.+.++|++.+.||.-...
T Consensus 81 ~sG~t----~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 81 GSGET----ESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred CCCCc----HHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 12322 56778888888899999999985543
No 117
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=41.73 E-value=91 Score=27.79 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHhhccCCcEEEEeCCCC-HHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHH
Q psy14735 130 YLSASDIDAAKNLLLKAKVIMFQGETP-WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEI 208 (340)
Q Consensus 130 ~~~~~~i~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~ 208 (340)
.++++.++.+.+.+.+++-+++.|... ..+...+.... ...|.++.+-............+..-|++++ -.
T Consensus 124 ~l~~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l---~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~-----iS 195 (292)
T PRK11337 124 ILDVDEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKF---LRIGVRCQAYDDAHIMLMSAALLQEGDVVLV-----VS 195 (292)
T ss_pred hcCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHH---hhCCCeEEEcCCHHHHHHHHhcCCCCCEEEE-----Ee
Confidence 466677777777788888777765433 23344444555 5567666542211100000112333443332 00
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCceEE
Q psy14735 209 ITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGVVY 246 (340)
Q Consensus 209 l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~ 246 (340)
..|. + .+..++++...++|++.++||.....-+.
T Consensus 196 ~sG~---t-~~~~~~~~~ak~~g~~ii~IT~~~~s~la 229 (292)
T PRK11337 196 HSGR---T-SDVIEAVELAKKNGAKIICITNSYHSPIA 229 (292)
T ss_pred CCCC---C-HHHHHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 1222 1 46778888888899999999986655443
No 118
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=41.26 E-value=79 Score=26.83 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=34.7
Q ss_pred CCcEEEEeCCC--CHHHHHHHHHhchhccc-CCceEEEeCCCCCCCCchhhhhcCcEEE
Q psy14735 145 KAKVIMFQGET--PWETTLYCLSKLHVSLE-SRAKIIVNPSPAVYPLNPIVMILADIIC 200 (340)
Q Consensus 145 ~~~~v~i~~~~--~~~~~~~~~~~a~~~~~-~~~~v~~d~~~~~~~~~~~~l~~~dil~ 200 (340)
.+|.+.++|+. ..+...++++.+ |+ ..+|+++-|+... .+-+.+|.+.
T Consensus 24 gtDaI~VGGS~gvt~~~~~~~v~~i---k~~~~lPvilfp~~~~-----~i~~~aD~~~ 74 (205)
T TIGR01769 24 GTDAIMVGGSLGIVESNLDQTVKKI---KKITNLPVILFPGNVN-----GLSRYADAVF 74 (205)
T ss_pred CCCEEEEcCcCCCCHHHHHHHHHHH---HhhcCCCEEEECCCcc-----ccCcCCCEEE
Confidence 37999998874 567788888888 66 6799998777543 4445666443
No 119
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=41.11 E-value=36 Score=28.33 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=30.2
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeCCCCCC
Q psy14735 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVY 186 (340)
Q Consensus 145 ~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~ 186 (340)
+.+++++-+..+......+++.. ++.|.++++|+.+..|
T Consensus 92 ~~~ii~ilg~~~g~~~~~~~r~~---~~~g~~v~vN~DGlEW 130 (185)
T PF09314_consen 92 KYDIILILGYGIGPFFLPFLRKL---RKKGGKVVVNMDGLEW 130 (185)
T ss_pred cCCEEEEEcCCccHHHHHHHHhh---hhcCCcEEECCCcchh
Confidence 35788887766556677778888 8889999999987665
No 120
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=40.82 E-value=3.2e+02 Score=25.75 Aligned_cols=102 Identities=18% Similarity=0.144 Sum_probs=60.6
Q ss_pred cCChHHHHHHHHHhc--CCceeEEEEecCChhhHHHHHHHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCc
Q psy14735 50 FSGKGANQCVAAAKL--RASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGA 127 (340)
Q Consensus 50 ~GG~~~n~a~~l~~l--G~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~ 127 (340)
..|.+.=-|...+-+ |.+| ++..-|. ||+.+.+.+++ +|.+...+... .
T Consensus 63 gsGt~amEAav~sl~~pgdkV-Lv~~nG~--FG~R~~~ia~~-~g~~v~~~~~~-------------------------w 113 (383)
T COG0075 63 GSGTLAMEAAVASLVEPGDKV-LVVVNGK--FGERFAEIAER-YGAEVVVLEVE-------------------------W 113 (383)
T ss_pred CCcHHHHHHHHHhccCCCCeE-EEEeCCh--HHHHHHHHHHH-hCCceEEEeCC-------------------------C
Confidence 334443333333333 3444 4444454 99999999999 88875433111 1
Q ss_pred CCCCCHHHHHHHHhhccCCcEEEE-eCCCCHH---HHHHHHHhchhcccCCceEEEeCCC
Q psy14735 128 NTYLSASDIDAAKNLLLKAKVIMF-QGETPWE---TTLYCLSKLHVSLESRAKIIVNPSP 183 (340)
Q Consensus 128 ~~~~~~~~i~~~~~~~~~~~~v~i-~~~~~~~---~~~~~~~~a~~~~~~~~~v~~d~~~ 183 (340)
...+++++++...+.-.+.+++.+ ..+.+.. -+.++.+.+ ++++..+++|...
T Consensus 114 g~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~---k~~g~l~iVDaVs 170 (383)
T COG0075 114 GEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAA---KEHGALLIVDAVS 170 (383)
T ss_pred CCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHH---HHcCCEEEEEecc
Confidence 145778888876543345555443 4444432 357778888 8899999999743
No 121
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=40.68 E-value=1.6e+02 Score=26.35 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=55.2
Q ss_pred HHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHH---Hh-----hcCC-------CCChhhHHH
Q psy14735 158 ETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAE---II-----TDMK-------INNEEDLAD 222 (340)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~---~l-----~~~~-------~~~~~~~~~ 222 (340)
+--.++++.++ ++.|.||+-|..... ......+.+|+|-+-..-.+ .| +|.. ..+++++.-
T Consensus 73 eeGL~iL~~vk--~~~glpvvTeV~~~~--q~~~vae~~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~~ 148 (290)
T PLN03033 73 AEGLKILEKVK--VAYDLPIVTDVHESS--QCEAVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMRN 148 (290)
T ss_pred HHHHHHHHHHH--HHHCCceEEeeCCHH--HHHHHHhhCcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHHH
Confidence 44556666664 788999998887543 44577788999886554332 12 1221 236789999
Q ss_pred HHHHHHhcCCCEEEEEecCCceE
Q psy14735 223 CMEKLLDMKCNTVIITLGGSGVV 245 (340)
Q Consensus 223 ~~~~l~~~g~~~vvvt~G~~G~~ 245 (340)
+++++.+.|-+.|+++. .|+.
T Consensus 149 aaeki~~~GN~~viLcE--RG~t 169 (290)
T PLN03033 149 SAEKVRLAGNPNVMVCE--RGTM 169 (290)
T ss_pred HHHHHHHcCCCcEEEEe--CCCC
Confidence 99999998888877774 5553
No 122
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=39.03 E-value=2.2e+02 Score=23.34 Aligned_cols=103 Identities=10% Similarity=0.021 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHhhc-cCCcEEEEeC-CC--CHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhc--CcEEEe--
Q psy14735 130 YLSASDIDAAKNLL-LKAKVIMFQG-ET--PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMIL--ADIICI-- 201 (340)
Q Consensus 130 ~~~~~~i~~~~~~~-~~~~~v~i~~-~~--~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~--~dil~~-- 201 (340)
.++.+.+....... .....+.++| +. .++ ..++++.+ ++.+..+.+...+...+.+..+++. .|.+.+
T Consensus 46 ~~~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~-l~~li~~~---~~~g~~v~i~TNg~~~~~l~~l~~~g~~~~v~isl 121 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQGLIDGVVITGGEPTLQAG-LPDFLRKV---RELGFEVKLDTNGSNPRVLEELLEEGLVDYVAMDV 121 (191)
T ss_pred cCCHHHHHHHHHHhcCCCCeEEEECCcccCcHh-HHHHHHHH---HHCCCeEEEEeCCCCHHHHHHHHhcCCCcEEEEec
Confidence 35555544332222 2234566655 22 234 67888888 7788888887766543333344432 455544
Q ss_pred --CHHHHHHhhcCCCCChhhHHHHHHHHHhcCCCEEE
Q psy14735 202 --NEQEAEIITDMKINNEEDLADCMEKLLDMKCNTVI 236 (340)
Q Consensus 202 --n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vv 236 (340)
..++...+++......+...+.++.+.+.|.+..+
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i 158 (191)
T TIGR02495 122 KAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFEL 158 (191)
T ss_pred cCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEE
Confidence 33445556664322223667778888887876433
No 123
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=38.58 E-value=1.4e+02 Score=25.68 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=41.5
Q ss_pred cCCcEEEEeCCC--CHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEE----eCHHHHHHhhc
Q psy14735 144 LKAKVIMFQGET--PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC----INEQEAEIITD 211 (340)
Q Consensus 144 ~~~~~v~i~~~~--~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~----~n~~E~~~l~~ 211 (340)
...|.++++|+. ..+...++++.+ |++.+|+++-|+... .+.+++|.+. +|-.....+.|
T Consensus 26 ~gtdai~vGGS~~vt~~~~~~~v~~i---k~~~lPvilfp~~~~-----~i~~~aDa~l~~svlNs~~~~~iig 91 (223)
T TIGR01768 26 SGTDAILIGGSQGVTYEKTDTLIEAL---RRYGLPIILFPSNPT-----NVSRDADALFFPSVLNSDDPYWIIG 91 (223)
T ss_pred cCCCEEEEcCCCcccHHHHHHHHHHH---hccCCCEEEeCCCcc-----ccCcCCCEEEEEEeecCCCchHHHh
Confidence 457999999876 457788888888 888899999887543 4455677443 34444444444
No 124
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=37.71 E-value=3.3e+02 Score=25.11 Aligned_cols=156 Identities=11% Similarity=-0.064 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHH
Q psy14735 129 TYLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEI 208 (340)
Q Consensus 129 ~~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~ 208 (340)
...+++.... .+++..+.++..+.......++.... ++.|.+.+||.-+++.+ ++-....++-+...++
T Consensus 133 l~~~~e~~~~---~l~~~g~~FlfAp~~hp~~k~v~~vR---~~LG~RTifN~LGPL~N---Pa~~~~qliGV~~p~~-- 201 (338)
T COG0547 133 LELSPEQAAR---ALEETGIGFLFAPAYHPAMKHVAPVR---KELGVRTIFNLLGPLLN---PARAKLQLIGVYHPEL-- 201 (338)
T ss_pred CCCCHHHHHH---HHHhcCeEEEEccccCHHHHHHHHHH---HHcCCCchHHhhccccC---CCCCCceEEEEeCHHH--
Confidence 3344555443 25555565554433334567777777 88899999998776542 2233334443333333
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCCCEEEEEecCCce-----------EEEecCCCceEEEccC-CCc---CcccCCCcch
Q psy14735 209 ITDMKINNEEDLADCMEKLLDMKCNTVIITLGGSGV-----------VYATRDNPRLKTITVD-HVE---YPIESEGVGD 273 (340)
Q Consensus 209 l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~-----------~~~~~~~~~~~~~p~~-~~~---~vvdttGaGD 273 (340)
....++.|...|.+..+|=+|..|. ....+++.+.+.+.+. +.. ..-+.-|..=
T Consensus 202 -----------~~~~A~~l~~LG~~ralvV~G~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~ 270 (338)
T COG0547 202 -----------VELLAEALRLLGVERALVVHGLEGLDEVTPTGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGGDP 270 (338)
T ss_pred -----------HHHHHHHHHHhCcceEEEEECCCCcccccCCCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCCCH
Confidence 2334556667798888888887653 2233332122333331 111 2234444434
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHhcc
Q psy14735 274 CFVGALAYYLCYFPQLP-LGEIILRSCHVARQSLFN 308 (340)
Q Consensus 274 aF~ag~~~~l~~~~g~~-~~~a~~~a~~~Aa~~~~~ 308 (340)
.-.+.++-..++ |.. ...-.-..|+++++.+..
T Consensus 271 ~ena~~~~~vL~--G~~~~~~d~v~~Naa~~L~~~g 304 (338)
T COG0547 271 EENAEILRAVLA--GEEGPARDAVALNAAAALYAAG 304 (338)
T ss_pred HHHHHHHHHHHC--CCCcchHHHHHHHHHHHHHHcC
Confidence 456688888888 844 443334445555555544
No 125
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=37.03 E-value=1e+02 Score=24.81 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCccc
Q psy14735 55 ANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTK 96 (340)
Q Consensus 55 ~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~ 96 (340)
.|+++.++..|.+.+++-.+|=+-.- ..|++ .|.|..
T Consensus 17 GNI~R~ca~tga~LhlI~PlGF~l~d----k~lkR-AGlDY~ 53 (155)
T COG0219 17 GNIIRTCAATGAELHLIEPLGFDLDD----KRLKR-AGLDYH 53 (155)
T ss_pred hHHHHHHHhcCCeEEEEccCCCccch----hhhhh-cccchH
Confidence 39999999999999999999965222 34666 777653
No 126
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=36.79 E-value=3.9e+02 Score=25.61 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=33.3
Q ss_pred CCcEEEEeCCCCH----HHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCH
Q psy14735 145 KAKVIMFQGETPW----ETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINE 203 (340)
Q Consensus 145 ~~~~v~i~~~~~~----~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~ 203 (340)
+.++|++.....+ .-+.++.+.+ +++|+++++|...........+--.+|++..+-
T Consensus 155 ~tk~V~~e~~~Np~~~v~di~~I~~la---~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~ 214 (437)
T PRK05613 155 NTKAFFGETFANPQADVLDIPAVAEVA---HRNQVPLIVDNTIATAALVRPLELGADVVVASL 214 (437)
T ss_pred cCeEEEEECCCCCCCcccCHHHHHHHH---HHcCCeEEEECCCccccccChHHhCCCEEEeec
Confidence 4566776433221 2367778888 889999999976332112223333577777655
No 127
>PHA00438 hypothetical protein
Probab=36.63 E-value=30 Score=24.03 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=16.0
Q ss_pred cCCCcchHHHHHHHHHHHc
Q psy14735 267 ESEGVGDCFVGALAYYLCY 285 (340)
Q Consensus 267 dttGaGDaF~ag~~~~l~~ 285 (340)
...|..++|.|||++|+--
T Consensus 45 R~~G~SE~~IaGfl~Gl~y 63 (81)
T PHA00438 45 RQAGYSEAFIAGFLAGLQY 63 (81)
T ss_pred HHcCCcHHHHHHHHHHHHH
Confidence 3479999999999999844
No 128
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=36.36 E-value=93 Score=22.34 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCccCcchhhhhcc
Q psy14735 272 GDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNSFPDKETLPDNLFSLK 329 (340)
Q Consensus 272 GDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~~~~~~~v~~~l~~~~ 329 (340)
.|.++-++++-++. ..++.+...+|...-..--+..|...+.|+.+++...+...+
T Consensus 22 ~~iL~i~~~a~l~G--~~~~~~i~~~~~~~~~~l~~~l~~~~~~PS~~Ti~rvl~~ld 77 (90)
T PF13808_consen 22 ADILLIALCAVLCG--ADSWREIAEWARAHEEWLRKRLGLPRGVPSHDTIRRVLSRLD 77 (90)
T ss_pred HHHHHHHHHHHHHc--cccHHHHHHHHHHhHHHHHHhcCCCCCCCcHHHHHHHHHHCC
Confidence 46677777777777 789999999999988888888888778999999998887654
No 129
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=35.55 E-value=1.2e+02 Score=24.70 Aligned_cols=52 Identities=19% Similarity=0.063 Sum_probs=39.0
Q ss_pred eecCCh-HHHHHHHHHhcCCceeEEEE-ecCChhhHHHHHHHhhhcCCcccceEe
Q psy14735 48 QRFSGK-GANQCVAAAKLRASVALISK-LGNDKFGKSYLEELRKYNSINTKYIWL 100 (340)
Q Consensus 48 ~~~GG~-~~n~a~~l~~lG~~v~~~~~-vG~D~~g~~i~~~l~~~~gi~~~~v~~ 100 (340)
.+.||+ ..-.|..|.+||+++.+++. +|--+.++.-.+.... .|.++.-+..
T Consensus 6 LfSGGKDSSLaA~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~-lgF~h~vl~L 59 (198)
T COG2117 6 LFSGGKDSSLAALILDKLGYEVELVTVNFGVLDSWKYARETAAI-LGFPHEVLQL 59 (198)
T ss_pred EecCCCchhHHHHHHHHhCCCcEEEEEEeccccchhhHHHHHHH-hCCCcceecc
Confidence 455666 45678999999999999987 7755567777777777 7887775543
No 130
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=35.34 E-value=83 Score=23.85 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhcCCCEEEEEecCCce
Q psy14735 218 EDLADCMEKLLDMKCNTVIITLGGSGV 244 (340)
Q Consensus 218 ~~~~~~~~~l~~~g~~~vvvt~G~~G~ 244 (340)
.+..++++.+.++|++.+++|.-....
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~ 100 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSP 100 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCh
Confidence 456777888888999999999865543
No 131
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=33.97 E-value=2.6e+02 Score=24.08 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=49.4
Q ss_pred cEEEEeC-CC--CHHHHHHHHHhchhcccCCceEEEeCCCCC---CCCchhhhhcCcEEEeCHH-----HHHHhhcCCCC
Q psy14735 147 KVIMFQG-ET--PWETTLYCLSKLHVSLESRAKIIVNPSPAV---YPLNPIVMILADIICINEQ-----EAEIITDMKIN 215 (340)
Q Consensus 147 ~~v~i~~-~~--~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~---~~~~~~~l~~~dil~~n~~-----E~~~l~~~~~~ 215 (340)
+.|.++| +. .++...++++.+ ++.|.++.++..+.. .+....+++..|.+.++.+ ....+.|.
T Consensus 72 ~~V~~sGGEPll~~~~~~~l~~~~---k~~g~~i~l~TNG~~~~~~~~~~~ll~~~d~v~islk~~~~e~~~~~~g~--- 145 (246)
T PRK11145 72 GGVTASGGEAILQAEFVRDWFRAC---KKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGV--- 145 (246)
T ss_pred CeEEEeCccHhcCHHHHHHHHHHH---HHcCCCEEEECCCCCCcchHHHHHHHHhCCEEEECCCcCChhhcccccCC---
Confidence 3566655 32 356667889999 888999988877653 2445566677786655433 23344443
Q ss_pred ChhhHHHHHHHHHhcCCCE
Q psy14735 216 NEEDLADCMEKLLDMKCNT 234 (340)
Q Consensus 216 ~~~~~~~~~~~l~~~g~~~ 234 (340)
+.+...+..+.+.+.|.+.
T Consensus 146 ~~~~~l~~i~~l~~~g~~v 164 (246)
T PRK11145 146 SNHRTLEFARYLAKRNQKT 164 (246)
T ss_pred ChHHHHHHHHHHHhCCCcE
Confidence 2234455556666666543
No 132
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=33.86 E-value=35 Score=23.69 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=16.8
Q ss_pred ccCCCcchHHHHHHHHHHHc
Q psy14735 266 IESEGVGDCFVGALAYYLCY 285 (340)
Q Consensus 266 vdttGaGDaF~ag~~~~l~~ 285 (340)
....|+.++|.+||+.|+..
T Consensus 44 lr~~G~SE~~I~Gfl~Gl~~ 63 (77)
T PF10911_consen 44 LRKQGWSESYILGFLAGLQY 63 (77)
T ss_pred HHHccccHHHHHHHHHHHHH
Confidence 34569999999999999865
No 133
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=33.05 E-value=99 Score=21.91 Aligned_cols=34 Identities=12% Similarity=-0.043 Sum_probs=29.1
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEe
Q psy14735 144 LKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVN 180 (340)
Q Consensus 144 ~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d 180 (340)
.++..|++....++++...+...+ +.+++|+.+.
T Consensus 23 gkakLViiA~Da~~~~~k~i~~~c---~~~~Vpv~~~ 56 (82)
T PRK13601 23 CNVLQVYIAKDAEEHVTKKIKELC---EEKSIKIVYI 56 (82)
T ss_pred CCeeEEEEeCCCCHHHHHHHHHHH---HhCCCCEEEe
Confidence 567889999999999999999999 8999998543
No 134
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=32.90 E-value=3.5e+02 Score=23.99 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=51.3
Q ss_pred cEEEEeC-CC--CHHHHHHHHHhchhcccCCceEEEeCCCCCC-CCchhhhhcCcEEE-----eCHHHHHHhhcCCCCCh
Q psy14735 147 KVIMFQG-ET--PWETTLYCLSKLHVSLESRAKIIVNPSPAVY-PLNPIVMILADIIC-----INEQEAEIITDMKINNE 217 (340)
Q Consensus 147 ~~v~i~~-~~--~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~-~~~~~~l~~~dil~-----~n~~E~~~l~~~~~~~~ 217 (340)
..|.++| +. .++...++++.+ ++.|..+.++..+... +....+++..|++. .+.+....+.|. +.
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~---k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~---~~ 200 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQAC---HERGIHTAVETSGFTPWETIEKVLPYVDLFLFDIKHLDDERHKEVTGV---DN 200 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHH---HHcCCcEeeeCCCCCCHHHHHHHHhhCCEEEEeeccCChHHHHHHhCC---Ch
Confidence 4566655 32 356667889999 8889888888877643 23445666677654 344445555554 23
Q ss_pred hhHHHHHHHHHhcCCCE
Q psy14735 218 EDLADCMEKLLDMKCNT 234 (340)
Q Consensus 218 ~~~~~~~~~l~~~g~~~ 234 (340)
+.+.+.++.|.+.+.+.
T Consensus 201 ~~vl~~i~~l~~~~~~~ 217 (295)
T TIGR02494 201 EPILENLEALAAAGKNV 217 (295)
T ss_pred HHHHHHHHHHHhCCCcE
Confidence 45666677777766544
No 135
>PRK13018 cell division protein FtsZ; Provisional
Probab=32.84 E-value=2.7e+02 Score=26.12 Aligned_cols=127 Identities=18% Similarity=0.175 Sum_probs=65.2
Q ss_pred eeecCChHHHHHHHHHhcCCc-eeEEEEecCChhhHHHHHHHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeC
Q psy14735 47 EQRFSGKGANQCVAAAKLRAS-VALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIP 125 (340)
Q Consensus 47 ~~~~GG~~~n~a~~l~~lG~~-v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~ 125 (340)
...+||.|.|+.-.+.+.|.. +.|+. +-.|. +.|.. ...+.. +.+- ...| .|. -.
T Consensus 33 ViGvGGaG~N~v~~m~~~~~~~v~~ia-iNTD~------q~L~~-~~a~~k-i~iG-~~~t---------~G~-----Ga 88 (378)
T PRK13018 33 VVGCGGAGNNTINRLYEIGIEGAETIA-INTDA------QHLAM-IKADKK-ILIG-KSLT---------RGL-----GA 88 (378)
T ss_pred EEEeCCcHHHHHHHHHHcCCCCceEEE-EECCH------HHHhc-CCCCcE-EecC-CccC---------CCC-----CC
Confidence 356899999999999998865 44444 35553 34444 222211 1111 0000 110 01
Q ss_pred CcCCCC----CHHHHHHHHhhccCCcEEEEe----CCCCHHHHHHHHHhchhcccCCceEE-EeCCCCCC----------
Q psy14735 126 GANTYL----SASDIDAAKNLLLKAKVIMFQ----GETPWETTLYCLSKLHVSLESRAKII-VNPSPAVY---------- 186 (340)
Q Consensus 126 ~~~~~~----~~~~i~~~~~~~~~~~~v~i~----~~~~~~~~~~~~~~a~~~~~~~~~v~-~d~~~~~~---------- 186 (340)
+.++.+ -.+..+.+.+.++.+|.|++. |-.-.....-+++.+ ++.+.+++ +=..|+..
T Consensus 89 G~dp~~G~~aaee~~d~I~~~le~~D~vfI~aGLGGGTGSGaapvIa~ia---ke~g~ltv~vVt~Pf~~EG~~r~~nA~ 165 (378)
T PRK13018 89 GGDPEVGRKAAEESRDEIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIA---KEQGALVVGVVTKPFKFEGRARMQKAE 165 (378)
T ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCcchhhHHHHHHHHH---HHcCCCeEEEEEcCcccccHhHHHHHH
Confidence 122222 233345555668999998774 223335556667777 66665543 21223221
Q ss_pred CCchhhhhcCcEEE
Q psy14735 187 PLNPIVMILADIIC 200 (340)
Q Consensus 187 ~~~~~~l~~~dil~ 200 (340)
..+..+.+.+|.++
T Consensus 166 ~gL~~L~e~~D~vi 179 (378)
T PRK13018 166 EGIERLREAADTVI 179 (378)
T ss_pred HHHHHHHHhCCEEE
Confidence 24556777788544
No 136
>KOG0257|consensus
Probab=32.78 E-value=1.6e+02 Score=27.74 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=37.4
Q ss_pred cCCCCCHHHHHHHHhhccCCcEEEEeCC-------CCHHHHHHHHHhchhcccCCceEEEeC
Q psy14735 127 ANTYLSASDIDAAKNLLLKAKVIMFQGE-------TPWETTLYCLSKLHVSLESRAKIIVNP 181 (340)
Q Consensus 127 ~~~~~~~~~i~~~~~~~~~~~~v~i~~~-------~~~~~~~~~~~~a~~~~~~~~~v~~d~ 181 (340)
.+..++.++++. ..-++.++++++.+ .+++.+.++.+.| +++++.|+.|-
T Consensus 156 ~~~~~D~~~le~--~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~---~k~~~lvisDe 212 (420)
T KOG0257|consen 156 SDWTLDPEELES--KITEKTKAIILNTPHNPTGKVFSREELERIAELC---KKHGLLVISDE 212 (420)
T ss_pred ccccCChHHHHh--hccCCccEEEEeCCCCCcCcccCHHHHHHHHHHH---HHCCEEEEEhh
Confidence 445666666665 34678999999643 3578899999999 99998888764
No 137
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=32.61 E-value=1.7e+02 Score=22.01 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=27.7
Q ss_pred ccCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeCCCCCC
Q psy14735 143 LLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVY 186 (340)
Q Consensus 143 ~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~ 186 (340)
++++|+++++. +.+...++...+ .+.|+ .++|.++.++
T Consensus 64 ~~~~Dvvf~a~--~~~~~~~~~~~~---~~~g~-~ViD~s~~~R 101 (121)
T PF01118_consen 64 LSDVDVVFLAL--PHGASKELAPKL---LKAGI-KVIDLSGDFR 101 (121)
T ss_dssp HTTESEEEE-S--CHHHHHHHHHHH---HHTTS-EEEESSSTTT
T ss_pred hhcCCEEEecC--chhHHHHHHHHH---hhCCc-EEEeCCHHHh
Confidence 57889999874 456777777777 77787 6788877653
No 138
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=32.27 E-value=73 Score=25.97 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=33.1
Q ss_pred CHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccC--CceEEEe
Q psy14735 132 SASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLES--RAKIIVN 180 (340)
Q Consensus 132 ~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~--~~~v~~d 180 (340)
+++.++.+.+.+.++|+|+.+.-+..|.+..+.... ..+ .+++.+-
T Consensus 44 ~~~~~~~~~~aia~ADii~~smlF~ed~v~~l~~~L---~~~r~~~~a~i~ 91 (164)
T PF11965_consen 44 DPEALEECEAAIARADIIFGSMLFIEDHVRPLLPAL---EARRDHCPAMII 91 (164)
T ss_pred ChHHHHHHHHHHHhCCEEEeehhhhHHHHHHHHHHH---HHHHccCCEEEE
Confidence 455667777779999999999888878777776666 433 5665543
No 139
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=32.21 E-value=1.6e+02 Score=26.07 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=54.0
Q ss_pred HHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHH---HHH---Hhh--cCC-------CCChhhHHH
Q psy14735 158 ETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQ---EAE---IIT--DMK-------INNEEDLAD 222 (340)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~---E~~---~l~--~~~-------~~~~~~~~~ 222 (340)
+.-.++++.++ ++.|.||+-|..... ......+.+|+|-+-.. ... .+. +.. ..+++++.-
T Consensus 67 eeGL~~L~~vk--~~~GlpvvTeV~~~~--~~~~v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~~~ 142 (264)
T PRK05198 67 EEGLKILQEVK--ETFGVPVLTDVHEPE--QAAPVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDMKN 142 (264)
T ss_pred HHHHHHHHHHH--HHHCCceEEEeCCHH--HHHHHHhhCcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHH
Confidence 34556666664 789999998876543 44577788999886552 222 221 211 246789999
Q ss_pred HHHHHHhcCCCEEEEEecCCce
Q psy14735 223 CMEKLLDMKCNTVIITLGGSGV 244 (340)
Q Consensus 223 ~~~~l~~~g~~~vvvt~G~~G~ 244 (340)
+++++.+.|-+.|+++. +|+
T Consensus 143 aaeyi~~~Gn~~vilcE--RG~ 162 (264)
T PRK05198 143 VVDKVREAGNDKIILCE--RGT 162 (264)
T ss_pred HHHHHHHcCCCeEEEEe--CCC
Confidence 99999998877777774 454
No 140
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=31.66 E-value=3.5e+02 Score=23.64 Aligned_cols=136 Identities=13% Similarity=0.106 Sum_probs=71.9
Q ss_pred ecCChhhHHHHHHHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCC-CHHHHHHHHhhccCCcE-EEE
Q psy14735 74 LGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYL-SASDIDAAKNLLLKAKV-IMF 151 (340)
Q Consensus 74 vG~D~~g~~i~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-v~i 151 (340)
+|+...|+.+.+.|.+ .|. .. +.+.. ..+... ..+....... ..+ .+ +.+.+..+ +++..+ .++
T Consensus 6 lgGTtE~r~la~~L~~-~g~-v~-~sv~t--~~g~~~--~~~~~~~~~v-~~G---~lg~~~~l~~~---l~~~~i~~vI 71 (249)
T PF02571_consen 6 LGGTTEGRKLAERLAE-AGY-VI-VSVAT--SYGGEL--LKPELPGLEV-RVG---RLGDEEGLAEF---LRENGIDAVI 71 (249)
T ss_pred EechHHHHHHHHHHHh-cCC-EE-EEEEh--hhhHhh--hccccCCceE-EEC---CCCCHHHHHHH---HHhCCCcEEE
Confidence 4555678999999998 776 21 22211 111111 1111000011 112 34 56666543 444344 566
Q ss_pred eCCCC--HHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHh
Q psy14735 152 QGETP--WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLD 229 (340)
Q Consensus 152 ~~~~~--~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~ 229 (340)
+...| .++...+.+.+ ++.|+|.+-=-++.+. . -+.-.+... +++.++++.+.+
T Consensus 72 DATHPfA~~is~na~~a~---~~~~ipylR~eRp~~~-~----~~~~~~~~v----------------~~~~eA~~~l~~ 127 (249)
T PF02571_consen 72 DATHPFAAEISQNAIEAC---RELGIPYLRFERPSWQ-P----EPDDNWHYV----------------DSYEEAAELLKE 127 (249)
T ss_pred ECCCchHHHHHHHHHHHH---hhcCcceEEEEcCCcc-c----CCCCeEEEe----------------CCHHHHHHHHhh
Confidence 76665 45567777788 8888886532233321 1 001112211 566677777776
Q ss_pred cCCCEEEEEecCCceEEE
Q psy14735 230 MKCNTVIITLGGSGVVYA 247 (340)
Q Consensus 230 ~g~~~vvvt~G~~G~~~~ 247 (340)
.+.+.|++|.|++..-.+
T Consensus 128 ~~~~~iflttGsk~L~~f 145 (249)
T PF02571_consen 128 LGGGRIFLTTGSKNLPPF 145 (249)
T ss_pred cCCCCEEEeCchhhHHHH
Confidence 677899999999875433
No 141
>KOG0174|consensus
Probab=30.92 E-value=33 Score=28.49 Aligned_cols=45 Identities=13% Similarity=0.088 Sum_probs=37.3
Q ss_pred CCcchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCCC
Q psy14735 269 EGVGDCFVGALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQNS 314 (340)
Q Consensus 269 tGaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~~ 314 (340)
-|.|-+|.=||+..--+. ++++|||.+|-..+-++++...|..-+
T Consensus 147 gGSGStfIYGf~D~~~r~-nMt~EE~~~fvk~Av~lAi~rDGsSGG 191 (224)
T KOG0174|consen 147 GGSGSTFIYGFCDANWRP-NMTLEECVRFVKNAVSLAIERDGSSGG 191 (224)
T ss_pred ccCCceeeeeeehhhcCC-CCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 488888887777765554 899999999999999999999987654
No 142
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=30.18 E-value=2.7e+02 Score=25.81 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=22.3
Q ss_pred eeecCChHHHHHHHHHhcCCceeEEEEecCC
Q psy14735 47 EQRFSGKGANQCVAAAKLRASVALISKLGND 77 (340)
Q Consensus 47 ~~~~GG~~~n~a~~l~~lG~~v~~~~~vG~D 77 (340)
....||.|.|+.-.+.+.+.+-.-+-.+-.|
T Consensus 22 viGvGg~G~n~v~~l~~~~~~~~~~iainTD 52 (349)
T TIGR00065 22 VIGVGGGGNNTVNRMLEEGVEGVEFIAINTD 52 (349)
T ss_pred EEEeCCcHHHHHHHHHHcCCCceEEEEEECC
Confidence 3568999999999999988654333344555
No 143
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=29.83 E-value=1.9e+02 Score=25.52 Aligned_cols=78 Identities=17% Similarity=0.070 Sum_probs=50.3
Q ss_pred HHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHH------Hhh--cCC------CC-ChhhHH
Q psy14735 157 WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAE------IIT--DMK------IN-NEEDLA 221 (340)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~------~l~--~~~------~~-~~~~~~ 221 (340)
.+.+..+.+.+ ++.|++++.++.... ....+.+.+|++++--.+.. .+. |.+ .. +.+++.
T Consensus 75 ~~gl~~l~~~~---~~~Gl~~~t~~~d~~--~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~ 149 (260)
T TIGR01361 75 EEGLKLLRRAA---DEHGLPVVTEVMDPR--DVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWL 149 (260)
T ss_pred HHHHHHHHHHH---HHhCCCEEEeeCChh--hHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHH
Confidence 35556666777 888999888776543 33445566788876554433 222 222 12 678899
Q ss_pred HHHHHHHhcCCCEEEEEe
Q psy14735 222 DCMEKLLDMKCNTVIITL 239 (340)
Q Consensus 222 ~~~~~l~~~g~~~vvvt~ 239 (340)
.+++.+.+.|.+.+++..
T Consensus 150 ~Ave~i~~~Gn~~i~l~~ 167 (260)
T TIGR01361 150 YAAEYILSSGNGNVILCE 167 (260)
T ss_pred HHHHHHHHcCCCcEEEEE
Confidence 999999988887666654
No 144
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=29.47 E-value=1.7e+02 Score=25.77 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=51.5
Q ss_pred HHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHH---HHHHh--hc---CC-------CCChhhHHH
Q psy14735 158 ETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQ---EAEII--TD---MK-------INNEEDLAD 222 (340)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~---E~~~l--~~---~~-------~~~~~~~~~ 222 (340)
+.-.++++.++ ++.|.||+-|..... ......+.+|+|-+-.. ..+.| .+ .. ..+++++.-
T Consensus 59 eeGL~iL~~vk--~~~glpvvTeV~~~~--~~~~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~l~ 134 (258)
T TIGR01362 59 EEGLKILQKVK--EEFGVPILTDVHESS--QCEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDMKN 134 (258)
T ss_pred HHHHHHHHHHH--HHhCCceEEEeCCHH--HHHHHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHH
Confidence 33455555553 788999998876543 34567788999886652 22211 12 11 236788899
Q ss_pred HHHHHHhcCCCEEEEEe
Q psy14735 223 CMEKLLDMKCNTVIITL 239 (340)
Q Consensus 223 ~~~~l~~~g~~~vvvt~ 239 (340)
+++++.+.|-+.|+++.
T Consensus 135 aaeyi~~~Gn~~viLcE 151 (258)
T TIGR01362 135 VVEKVLSTGNKNILLCE 151 (258)
T ss_pred HHHHHHHcCCCcEEEEe
Confidence 99999998877777764
No 145
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=29.26 E-value=3.8e+02 Score=23.22 Aligned_cols=43 Identities=9% Similarity=0.161 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHhhccCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEE
Q psy14735 130 YLSASDIDAAKNLLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIV 179 (340)
Q Consensus 130 ~~~~~~i~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~ 179 (340)
.++.+.+.. .++++|+++.+.. ..+....+-+.+ .++++|++.
T Consensus 102 ~i~~~~~~~---~~~~~DlVvd~~D-~~~~r~~ln~~~---~~~~ip~v~ 144 (240)
T TIGR02355 102 KLDDAELAA---LIAEHDIVVDCTD-NVEVRNQLNRQC---FAAKVPLVS 144 (240)
T ss_pred cCCHHHHHH---HhhcCCEEEEcCC-CHHHHHHHHHHH---HHcCCCEEE
Confidence 344444433 4678898776543 346666677778 888888775
No 146
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=29.11 E-value=1e+02 Score=21.80 Aligned_cols=33 Identities=9% Similarity=-0.108 Sum_probs=27.8
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEE
Q psy14735 144 LKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIV 179 (340)
Q Consensus 144 ~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~ 179 (340)
.++..+++..+.++.+...+...+ +.+++|++.
T Consensus 26 gkaklViiA~D~~~~~~~~i~~~c---~~~~Vp~~~ 58 (82)
T PRK13602 26 GSVKEVVVAEDADPRLTEKVEALA---NEKGVPVSK 58 (82)
T ss_pred CCeeEEEEECCCCHHHHHHHHHHH---HHcCCCEEE
Confidence 467889999999988888888888 888888764
No 147
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=29.10 E-value=3.2e+02 Score=22.42 Aligned_cols=51 Identities=20% Similarity=0.138 Sum_probs=33.2
Q ss_pred CcEEEEe--CCCCHHHHHHHHHhchhcccCCceEEE-----eCCCCCCCCchhhhhcCcEEE
Q psy14735 146 AKVIMFQ--GETPWETTLYCLSKLHVSLESRAKIIV-----NPSPAVYPLNPIVMILADIIC 200 (340)
Q Consensus 146 ~~~v~i~--~~~~~~~~~~~~~~a~~~~~~~~~v~~-----d~~~~~~~~~~~~l~~~dil~ 200 (340)
+++|.++ -.++ +.+.++++.+ ...|++|++ |.....++....|++.+|-+.
T Consensus 77 ~dvI~IDEaQFf~-~~i~~l~~~~---~~~g~~Vi~~GL~~df~~~~F~~~~~Ll~~Ad~i~ 134 (176)
T PF00265_consen 77 YDVIGIDEAQFFD-EQIVQLVEIL---ANKGIPVICAGLDTDFRGEPFGGSPRLLPLADKIT 134 (176)
T ss_dssp CSEEEESSGGGST-TTHHHHHHHH---HHTT-EEEEEEESB-TTSSB-TTHHHHHHH-SEEE
T ss_pred CCEEEEechHhhH-HHHHHHHHHH---HhCCCeEEEEeeCCccccCcchhHHHHHhhCCeEE
Confidence 8999995 2334 4566788888 888999874 444555566778888887664
No 148
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=28.99 E-value=1.4e+02 Score=24.92 Aligned_cols=56 Identities=13% Similarity=-0.008 Sum_probs=39.5
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeC-CCCC-CCCchhhhh-cCcEEEeC
Q psy14735 144 LKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNP-SPAV-YPLNPIVMI-LADIICIN 202 (340)
Q Consensus 144 ~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~-~~~~-~~~~~~~l~-~~dil~~n 202 (340)
..+|++.+....+.....++++.+ +++|.++.++. .+.. .+....+.+ .+|++.++
T Consensus 75 ~Gad~i~vh~~~~~~~~~~~i~~~---~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 75 AGADIVTVLGVADDATIKGAVKAA---KKHGKEVQVDLINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHH---HHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence 468999888877766678899999 99999999874 4321 112233444 78998875
No 149
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=28.17 E-value=1.1e+02 Score=26.21 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=37.1
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHhchhcccCCce--EEEeCCCCCCCCchhhhhcCcEEE
Q psy14735 144 LKAKVIMFQGETPWETTLYCLSKLHVSLESRAK--IIVNPSPAVYPLNPIVMILADIIC 200 (340)
Q Consensus 144 ~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~--v~~d~~~~~~~~~~~~l~~~dil~ 200 (340)
.+++++.+..+ ..+-..++++.. |+.|++ ++++|.-+. +.+..+++.+|++.
T Consensus 83 agad~It~H~E-~~~~~~r~i~~I---k~~G~kaGv~lnP~Tp~-~~i~~~l~~vD~Vl 136 (220)
T COG0036 83 AGADIITFHAE-ATEHIHRTIQLI---KELGVKAGLVLNPATPL-EALEPVLDDVDLVL 136 (220)
T ss_pred hCCCEEEEEec-cCcCHHHHHHHH---HHcCCeEEEEECCCCCH-HHHHHHHhhCCEEE
Confidence 35899888877 335578888888 888888 567776543 24567788888664
No 150
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=27.92 E-value=98 Score=24.14 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=26.4
Q ss_pred EEEEeCCCCHHHHHHHHHhchhcccCCceEEEeC
Q psy14735 148 VIMFQGETPWETTLYCLSKLHVSLESRAKIIVNP 181 (340)
Q Consensus 148 ~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~ 181 (340)
+++++.++|.+.+..+++.+ .+.|.++++.-
T Consensus 2 ~vFvS~SMP~~~Lk~l~~~a---~~~g~~~VlRG 32 (130)
T TIGR02742 2 MVFVSFSMPEPLLKQLLDQA---EALGAPLVIRG 32 (130)
T ss_pred EEEEEcCCCHHHHHHHHHHH---HHhCCeEEEeC
Confidence 46678899999999999999 88999888754
No 151
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=27.88 E-value=2.2e+02 Score=24.63 Aligned_cols=51 Identities=18% Similarity=0.084 Sum_probs=29.4
Q ss_pred ccCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEE
Q psy14735 143 LLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC 200 (340)
Q Consensus 143 ~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~ 200 (340)
-..+|.++++|+.........++..+ +...+|+++-|+... .+-+.+|.+.
T Consensus 30 ~~gtDai~VGGS~~~~~~d~vv~~ik--~~~~lPvilfPg~~~-----~vs~~aDail 80 (230)
T PF01884_consen 30 ESGTDAIIVGGSDTGVTLDNVVALIK--RVTDLPVILFPGSPS-----QVSPGADAIL 80 (230)
T ss_dssp CTT-SEEEEE-STHCHHHHHHHHHHH--HHSSS-EEEETSTCC-----G--TTSSEEE
T ss_pred hcCCCEEEECCCCCccchHHHHHHHH--hcCCCCEEEeCCChh-----hcCcCCCEEE
Confidence 46799999999882123344444442 337899999888653 4456677554
No 152
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=27.70 E-value=1.6e+02 Score=27.43 Aligned_cols=80 Identities=13% Similarity=0.067 Sum_probs=54.1
Q ss_pred HHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHH------Hhh--cCC------C-CChhhHH
Q psy14735 157 WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAE------IIT--DMK------I-NNEEDLA 221 (340)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~------~l~--~~~------~-~~~~~~~ 221 (340)
.+-...+.+.+ ++.|++++.++.... ....+.+.+|++.+.-.++. .+. |.+ . .+.+++.
T Consensus 168 ~e~l~~L~~~~---~~~Gl~~~t~v~d~~--~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~ 242 (360)
T PRK12595 168 VEGLKILKQVA---DEYGLAVISEIVNPA--DVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFI 242 (360)
T ss_pred HHHHHHHHHHH---HHcCCCEEEeeCCHH--HHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHH
Confidence 46677777788 899999998876543 33455566888886555433 222 221 1 3678999
Q ss_pred HHHHHHHhcCCCEEEEEe-cC
Q psy14735 222 DCMEKLLDMKCNTVIITL-GG 241 (340)
Q Consensus 222 ~~~~~l~~~g~~~vvvt~-G~ 241 (340)
.+++.+.+.|.+.+++.. |.
T Consensus 243 ~Ave~i~~~Gn~~i~L~erg~ 263 (360)
T PRK12595 243 YAAEYIMSQGNGQIILCERGI 263 (360)
T ss_pred HHHHHHHHCCCCCEEEECCcc
Confidence 999999988887777764 43
No 153
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=27.50 E-value=3.1e+02 Score=23.50 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=39.6
Q ss_pred CCHHHHHHHHhhccCCcEEEEeCCCC----HHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEE----eC
Q psy14735 131 LSASDIDAAKNLLLKAKVIMFQGETP----WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC----IN 202 (340)
Q Consensus 131 ~~~~~i~~~~~~~~~~~~v~i~~~~~----~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~----~n 202 (340)
.+...+..... ....|.++++|+.. .+-..++++.. ++ ..|+++-|+... .+-+.+|.+. +|
T Consensus 12 ~~~~~~~~~~~-~~gtdai~vGGS~~v~~~~~~~~~~ik~~---~~-~~Pvilfp~~~~-----~i~~~aDa~l~~svln 81 (219)
T cd02812 12 LVDEEIAKLAE-ESGTDAIMVGGSDGVSSTLDNVVRLIKRI---RR-PVPVILFPSNPE-----AVSPGADAYLFPSVLN 81 (219)
T ss_pred CCHHHHHHHHH-hcCCCEEEECCccchhhhHHHHHHHHHHh---cC-CCCEEEeCCCcc-----ccCcCCCEEEEEeeec
Confidence 44444444321 15689999998763 23334444544 44 589999887653 3455677544 34
Q ss_pred HHHHHHhhc
Q psy14735 203 EQEAEIITD 211 (340)
Q Consensus 203 ~~E~~~l~~ 211 (340)
-.....+.|
T Consensus 82 s~n~~~i~g 90 (219)
T cd02812 82 SGDPYWIIG 90 (219)
T ss_pred CCCchHHHH
Confidence 444444444
No 154
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=27.38 E-value=1.2e+02 Score=25.26 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=37.5
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEe-CCCCCCCCchhhhh-cCcEEEeC
Q psy14735 144 LKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVN-PSPAVYPLNPIVMI-LADIICIN 202 (340)
Q Consensus 144 ~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d-~~~~~~~~~~~~l~-~~dil~~n 202 (340)
..++++.+....+.+...++++.+ +++|+++.++ +.+.........+. .+|++..+
T Consensus 76 aGad~i~~h~~~~~~~~~~~i~~~---~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 76 AGADIVTVLGAAPLSTIKKAVKAA---KKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred cCCCEEEEEeeCCHHHHHHHHHHH---HHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 368899988776666678889999 8899998876 44332111112333 78887764
No 155
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=27.27 E-value=2.2e+02 Score=25.01 Aligned_cols=69 Identities=17% Similarity=0.098 Sum_probs=47.5
Q ss_pred HHHHHHHHhhccCCcEEEEeCCC-CHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHH
Q psy14735 133 ASDIDAAKNLLLKAKVIMFQGET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAE 207 (340)
Q Consensus 133 ~~~i~~~~~~~~~~~~v~i~~~~-~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~ 207 (340)
+-++.... --.+|++++.... +.+.+.++++.+ ++.|..+++|..... +.....--.+|++-.|...+.
T Consensus 123 ~~qi~~a~--~~GAD~VlLi~~~l~~~~l~~li~~a---~~lGl~~lvevh~~~-E~~~A~~~gadiIgin~rdl~ 192 (260)
T PRK00278 123 PYQIYEAR--AAGADAILLIVAALDDEQLKELLDYA---HSLGLDVLVEVHDEE-ELERALKLGAPLIGINNRNLK 192 (260)
T ss_pred HHHHHHHH--HcCCCEEEEEeccCCHHHHHHHHHHH---HHcCCeEEEEeCCHH-HHHHHHHcCCCEEEECCCCcc
Confidence 33444432 4578999887655 668899999999 999999999987642 122233346899988865443
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=27.21 E-value=1.1e+02 Score=20.93 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCCceeEEEEecC------ChhhHHHHHHHhhhcCCcc
Q psy14735 53 KGANQCVAAAKLRASVALISKLGN------DKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 53 ~~~n~a~~l~~lG~~v~~~~~vG~------D~~g~~i~~~l~~~~gi~~ 95 (340)
.|.=.|..|+++|.+++++..-.. ....+.+.+.|++ .||+.
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~-~gV~v 57 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRK-RGVEV 57 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHH-TTEEE
T ss_pred HHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHH-CCCEE
Confidence 366788889999999999887442 2346667788888 78764
No 157
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=27.08 E-value=3.9e+02 Score=22.66 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=50.4
Q ss_pred cEEEEeC-CC--CHHHHHHHHHhchhcccCCceEEEeCCCCC---CCCchhhhhcCcEEEeC-----HHHHHHhhcCCCC
Q psy14735 147 KVIMFQG-ET--PWETTLYCLSKLHVSLESRAKIIVNPSPAV---YPLNPIVMILADIICIN-----EQEAEIITDMKIN 215 (340)
Q Consensus 147 ~~v~i~~-~~--~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~---~~~~~~~l~~~dil~~n-----~~E~~~l~~~~~~ 215 (340)
+.|.+.| +. .++...++++.+ ++.+.++.+...+.. .+....+++..|.+.++ .+....+.+.
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~---~~~g~~~~i~TNG~~~~~~~~~~~ll~~~d~v~isl~~~~~~~~~~~~g~--- 140 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKAC---KELGIHTCLDTSGFLGGCTEAADELLEYTDLVLLDIKHFNPEKYKKLTGV--- 140 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHH---HHCCCCEEEEcCCCCCccHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHCC---
Confidence 3555554 32 356677899999 888888888776642 12345566677766554 3334444443
Q ss_pred ChhhHHHHHHHHHhcCCCE
Q psy14735 216 NEEDLADCMEKLLDMKCNT 234 (340)
Q Consensus 216 ~~~~~~~~~~~l~~~g~~~ 234 (340)
+.+...+..+.+.+.|.+.
T Consensus 141 ~~~~v~~~i~~l~~~g~~~ 159 (235)
T TIGR02493 141 SLQPTLDFAKYLAKRNKPI 159 (235)
T ss_pred CcHHHHHHHHHHHhCCCcE
Confidence 3355667777777777654
No 158
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=26.80 E-value=1.9e+02 Score=27.12 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=24.5
Q ss_pred HHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcccce
Q psy14735 59 VAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYI 98 (340)
Q Consensus 59 ~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v 98 (340)
..+++-|..+.--+.+=+. .-.++...|++ .||++.++
T Consensus 95 ~~la~aGD~iVss~~LYGG-T~~lf~~tl~~-~Gi~v~fv 132 (426)
T COG2873 95 LNLAGAGDNIVSSSKLYGG-TYNLFSHTLKR-LGIEVRFV 132 (426)
T ss_pred HHhccCCCeeEeeccccCc-hHHHHHHHHHh-cCcEEEEe
Confidence 3455557777666665443 24457777899 99987765
No 159
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=26.65 E-value=3e+02 Score=23.26 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=31.6
Q ss_pred hhhhcCcEEEeCHHHHHHhhcCCCCChhhHHHHHHHHHhc-CCCEEEEEecCCc
Q psy14735 191 IVMILADIICINEQEAEIITDMKINNEEDLADCMEKLLDM-KCNTVIITLGGSG 243 (340)
Q Consensus 191 ~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~-g~~~vvvt~G~~G 243 (340)
+.+..+|++.+|..++..+.+. +++.+.+...+. +-..++.|.+..|
T Consensus 139 P~i~~aDllVInK~DLa~~v~~------dlevm~~da~~~np~~~ii~~n~ktg 186 (202)
T COG0378 139 PGIFKADLLVINKTDLAPYVGA------DLEVMARDAKEVNPEAPIIFTNLKTG 186 (202)
T ss_pred CceeEeeEEEEehHHhHHHhCc------cHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 3444499999999999998885 455555555554 3345666666544
No 160
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=26.62 E-value=5.3e+02 Score=24.08 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=51.9
Q ss_pred ceeEEEEecCChhhHHHHHHHh-hhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccC
Q psy14735 67 SVALISKLGNDKFGKSYLEELR-KYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLK 145 (340)
Q Consensus 67 ~v~~~~~vG~D~~g~~i~~~l~-~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 145 (340)
++.++|.-|- .|+.+++.|. + .......+..-...+.+-..+.+ .|+. +..+++... +.+++
T Consensus 2 ~VavvGATG~--VG~~ll~~L~~e-~~fp~~~~~~~ss~~s~g~~~~f--~~~~-----------~~v~~~~~~-~~~~~ 64 (366)
T TIGR01745 2 NVGLVGWRGM--VGSVLMQRMQEE-RDFDAIRPVFFSTSQLGQAAPSF--GGTT-----------GTLQDAFDI-DALKA 64 (366)
T ss_pred eEEEEcCcCH--HHHHHHHHHHhC-CCCccccEEEEEchhhCCCcCCC--CCCc-----------ceEEcCccc-ccccC
Confidence 4566777664 8999999887 4 45543322222221221111111 1111 111111110 12567
Q ss_pred CcEEEEeCCCCHHHHHHHHHhchhcccCCce-EEEeCCCCC
Q psy14735 146 AKVIMFQGETPWETTLYCLSKLHVSLESRAK-IIVNPSPAV 185 (340)
Q Consensus 146 ~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~-v~~d~~~~~ 185 (340)
.|+++++. +.++..++...+ .+.|.+ +++|-++.+
T Consensus 65 vDivffa~--g~~~s~~~~p~~---~~aG~~~~VIDnSSa~ 100 (366)
T TIGR01745 65 LDIIITCQ--GGDYTNEIYPKL---RESGWQGYWIDAASSL 100 (366)
T ss_pred CCEEEEcC--CHHHHHHHHHHH---HhCCCCeEEEECChhh
Confidence 89988865 346788888888 888974 677776554
No 161
>PRK14727 putative mercuric reductase; Provisional
Probab=26.59 E-value=1e+02 Score=29.82 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=12.1
Q ss_pred ccccccCCCCCcEEEEcc
Q psy14735 5 SHCVANLKDEADIVVVGS 22 (340)
Q Consensus 5 ~~~~~~~~~~~~I~viG~ 22 (340)
|.|++.+..+.+++|||.
T Consensus 7 ~~~~~~~~~~~dvvvIG~ 24 (479)
T PRK14727 7 SNCMTRSKLQLHVAIIGS 24 (479)
T ss_pred ccccccCCCCCcEEEECC
Confidence 455666666778888863
No 162
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=26.53 E-value=1.1e+02 Score=22.38 Aligned_cols=33 Identities=15% Similarity=-0.002 Sum_probs=27.0
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEE
Q psy14735 144 LKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIV 179 (340)
Q Consensus 144 ~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~ 179 (340)
.++..|+++...+++....+...+ +.+++|++.
T Consensus 31 gkaklViiA~D~~~~~~~~i~~~c---~~~~Ip~~~ 63 (99)
T PRK01018 31 GKAKLVIVASNCPKDIKEDIEYYA---KLSGIPVYE 63 (99)
T ss_pred CCceEEEEeCCCCHHHHHHHHHHH---HHcCCCEEE
Confidence 457888898888888888888888 888888744
No 163
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=26.34 E-value=1.5e+02 Score=21.13 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=29.9
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeCC
Q psy14735 144 LKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPS 182 (340)
Q Consensus 144 ~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~ 182 (340)
..+..+++.....+....++...+ .+.++|+++-++
T Consensus 28 g~~~~v~iA~Da~~~vv~~l~~lc---eek~Ip~v~V~s 63 (84)
T PRK13600 28 DQVTSLIIAEDVEVYLMTRVLSQI---NQKNIPVSFFKS 63 (84)
T ss_pred CCceEEEEeCCCCHHHHHHHHHHH---HHcCCCEEEECC
Confidence 357789999988888899999999 999999876543
No 164
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=25.89 E-value=5.3e+02 Score=23.77 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=51.7
Q ss_pred CceeEEEEecCChhhHHHHHHHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccC
Q psy14735 66 ASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLK 145 (340)
Q Consensus 66 ~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 145 (340)
.++.++|.-|. .|+.+.+.|.+ .+....-+..-.. ....|++...+ .+....+...-.+. ..+++
T Consensus 2 ~~VavvGATG~--VG~~~~~~L~e-~~f~~~~~~~~AS---------~rSaG~~~~~f-~~~~~~v~~~~~~~--~~~~~ 66 (334)
T COG0136 2 LNVAVLGATGA--VGQVLLELLEE-RHFPFEELVLLAS---------ARSAGKKYIEF-GGKSIGVPEDAADE--FVFSD 66 (334)
T ss_pred cEEEEEeccch--HHHHHHHHHHh-cCCCcceEEEEec---------ccccCCccccc-cCccccCccccccc--ccccc
Confidence 46778888776 89999999988 5544332211111 11224331111 11111111100111 12567
Q ss_pred CcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeCC
Q psy14735 146 AKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPS 182 (340)
Q Consensus 146 ~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~ 182 (340)
.|+++++... +...++...+ .+.|+.|+-+.+
T Consensus 67 ~Divf~~ag~--~~s~~~~p~~---~~~G~~VIdnsS 98 (334)
T COG0136 67 VDIVFFAAGG--SVSKEVEPKA---AEAGCVVIDNSS 98 (334)
T ss_pred CCEEEEeCch--HHHHHHHHHH---HHcCCEEEeCCc
Confidence 8998886532 4557788888 888875554444
No 165
>PRK15063 isocitrate lyase; Provisional
Probab=25.70 E-value=4.5e+02 Score=25.11 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=50.0
Q ss_pred HHHHHHhhccCCcEEEEeC-CCCHHHHHHHHHhchhccc--CCceEEEeCCCCC-CCCchhhhhcCcEEEeCHHHHHHhh
Q psy14735 135 DIDAAKNLLLKAKVIMFQG-ETPWETTLYCLSKLHVSLE--SRAKIIVNPSPAV-YPLNPIVMILADIICINEQEAEIIT 210 (340)
Q Consensus 135 ~i~~~~~~~~~~~~v~i~~-~~~~~~~~~~~~~a~~~~~--~~~~v~~d~~~~~-~~~~~~~l~~~dil~~n~~E~~~l~ 210 (340)
-|+....+.+.+|++.+.. ....+...++.+.. +. .+..+.++.+|.+ |.. + ++.
T Consensus 267 AI~Ra~AYa~GAD~iw~Et~~~d~ee~~~fa~~v---~~~~P~~~layn~sPsfnW~~------~-----~~~------- 325 (428)
T PRK15063 267 AIARGLAYAPYADLIWCETSTPDLEEARRFAEAI---HAKFPGKLLAYNCSPSFNWKK------N-----LDD------- 325 (428)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHhh---cccCccceeecCCCCCccccc------c-----cCH-------
Confidence 3454445567899999974 56677788888777 54 3334556666543 321 1 122
Q ss_pred cCCCCChhhHHHHHHHHHhcCCCEEEEEecC
Q psy14735 211 DMKINNEEDLADCMEKLLDMKCNTVIITLGG 241 (340)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~ 241 (340)
+++....+.|.++|.+.+++|+..
T Consensus 326 -------~~~~~f~~eL~~~Gy~~~~~~la~ 349 (428)
T PRK15063 326 -------ATIAKFQRELGAMGYKFQFITLAG 349 (428)
T ss_pred -------HHHHHHHHHHHHcCceEEEechHH
Confidence 344555567888899999998754
No 166
>KOG3361|consensus
Probab=25.62 E-value=77 Score=24.62 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=39.6
Q ss_pred cCCCcchHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHHHhcccCCCC--CCCCccCcchhhhhccc
Q psy14735 267 ESEGVGDCFVG-ALAYYLCYFPQLPLGEIILRSCHVARQSLFNVGLQN--SFPDKETLPDNLFSLKC 330 (340)
Q Consensus 267 dttGaGDaF~a-g~~~~l~~~~g~~~~~a~~~a~~~Aa~~~~~~g~~~--~~~~~~~v~~~l~~~~~ 330 (340)
-|.|||-+.++ .++..+.+ |+++++++..-+.-=|-.+.-+-... ++.-.+.|...++..+.
T Consensus 85 KTFGCGSAIASSS~aTewvk--gkt~dea~kIkNteIAKeL~LPPVKLHCSMLAEDAIKaAikdyk~ 149 (157)
T KOG3361|consen 85 KTFGCGSAIASSSLATEWVK--GKTLDEALKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKE 149 (157)
T ss_pred eecccchHhhhhHHHHHHHc--cccHHHHHhcccHHHHHhccCCchhhhhHHHHHHHHHHHHHHHHH
Confidence 57899998876 56778899 99999999877765555444332111 23344555555554433
No 167
>PRK03673 hypothetical protein; Provisional
Probab=25.46 E-value=2.9e+02 Score=26.12 Aligned_cols=48 Identities=10% Similarity=0.040 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcccceEeeCC
Q psy14735 53 KGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQD 103 (340)
Q Consensus 53 ~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v~~~~~ 103 (340)
.+...+..|..+|.++...+.+++| -+.|.+.++. ..-..+.+.+..+
T Consensus 22 N~~~la~~L~~~G~~v~~~~~v~D~--~~~i~~~l~~-a~~~~DlVI~tGG 69 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRNTVGDN--LDALVAILRE-RSQHADVLIVNGG 69 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCC--HHHHHHHHHH-HhccCCEEEEcCC
Confidence 5778888899999999999999997 3557778776 5444555555443
No 168
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=24.99 E-value=1.1e+02 Score=23.17 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=24.7
Q ss_pred EEEeCCCCHHHHHHHHHhchhcccCCceEEEeC
Q psy14735 149 IMFQGETPWETTLYCLSKLHVSLESRAKIIVNP 181 (340)
Q Consensus 149 v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~ 181 (340)
++++.++|.+.++.+++.+ .+.+.++++--
T Consensus 2 iFvS~SMP~~~L~~l~~~a---~~~~~~~V~RG 31 (113)
T PF09673_consen 2 IFVSFSMPDASLRNLLKQA---ERAGVVVVFRG 31 (113)
T ss_pred EEEECCCCHHHHHHHHHHH---HhCCcEEEEEC
Confidence 5678888999999999998 78888888754
No 169
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=24.79 E-value=2.3e+02 Score=25.35 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=53.5
Q ss_pred HHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHH---HHH---Hh--hcCC-------CCChhhHHH
Q psy14735 158 ETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQ---EAE---II--TDMK-------INNEEDLAD 222 (340)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~---E~~---~l--~~~~-------~~~~~~~~~ 222 (340)
+.-.++++.++ ++.|.+|+-|..... ......+.+|+|-+-.. ... .+ ++.. ..+++++.-
T Consensus 73 eeGL~iL~~vk--~~~GlpvvTeV~~~~--~~~~~ae~vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~~~ 148 (281)
T PRK12457 73 DEGLRIFEEVK--ARFGVPVITDVHEVE--QAAPVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQMKH 148 (281)
T ss_pred HHHHHHHHHHH--HHHCCceEEEeCCHH--HHHHHhhhCeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHHHH
Confidence 34556665553 789999998877543 34567788998886552 222 11 1211 246788999
Q ss_pred HHHHHHhcCCCEEEEEecCCceE
Q psy14735 223 CMEKLLDMKCNTVIITLGGSGVV 245 (340)
Q Consensus 223 ~~~~l~~~g~~~vvvt~G~~G~~ 245 (340)
+++++.+.|.+.|+++. +|+.
T Consensus 149 aae~i~~~Gn~~vilcE--RG~~ 169 (281)
T PRK12457 149 VVSKCREAGNDRVILCE--RGSS 169 (281)
T ss_pred HHHHHHHcCCCeEEEEe--CCCC
Confidence 99999998888777774 4444
No 170
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=24.77 E-value=3.4e+02 Score=22.48 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=37.4
Q ss_pred cCCcEEEEe--------CCCCHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEE
Q psy14735 144 LKAKVIMFQ--------GETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC 200 (340)
Q Consensus 144 ~~~~~v~i~--------~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~ 200 (340)
.++|+++++ +.++.+.+.++++. +..+..|++.-+... +++++.+|.++
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~----rp~~~evILTGR~~p----~~Lie~AD~VT 170 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEK----RPSHVDVILTGPEMP----ESLLAIADQIT 170 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHh----CCCCCEEEEECCCCC----HHHHHhCCeee
Confidence 568999996 56677778888876 455678899887654 58889999875
No 171
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=24.69 E-value=1.5e+02 Score=19.67 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHc
Q psy14735 273 DCFVGALAYYLCY 285 (340)
Q Consensus 273 DaF~ag~~~~l~~ 285 (340)
|+|.+++.+++.+
T Consensus 4 Daf~vg~~~g~~~ 16 (67)
T PF02659_consen 4 DAFAVGISYGLRG 16 (67)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999987
No 172
>PRK06683 hypothetical protein; Provisional
Probab=24.49 E-value=1.5e+02 Score=20.99 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=28.7
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEe
Q psy14735 144 LKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVN 180 (340)
Q Consensus 144 ~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d 180 (340)
.++..+++..+.++.+...+...+ +.+++|++.-
T Consensus 26 gkaklViiA~Da~~~~~~~i~~~~---~~~~Vpv~~~ 59 (82)
T PRK06683 26 GIVKEVVIAEDADMRLTHVIIRTA---LQHNIPITKV 59 (82)
T ss_pred CCeeEEEEECCCCHHHHHHHHHHH---HhcCCCEEEE
Confidence 467889999999989888989999 8899988643
No 173
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=24.30 E-value=85 Score=27.83 Aligned_cols=91 Identities=15% Similarity=0.058 Sum_probs=55.6
Q ss_pred CCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEccCCCcCcccC--CCcchHHHHHHHHHHHcCCCCCH
Q psy14735 214 INNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITVDHVEYPIES--EGVGDCFVGALAYYLCYFPQLPL 291 (340)
Q Consensus 214 ~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~~~~~~vvdt--tGaGDaF~ag~~~~l~~~~g~~~ 291 (340)
.+++.++.++.+.+.+.|-..+++|..+.=+-.+..-..-...++. .++.++|+ .++|=.+.+-.+..+.+. |.++
T Consensus 61 ~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~-~~i~ViDS~~~s~~~g~~v~~a~~~~~~-G~s~ 138 (275)
T TIGR00762 61 QPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVDE-AKVTVIDSKSASMGLGLLVLEAAKLAEE-GKSL 138 (275)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCCC-CCEEEECChHHHHHHHHHHHHHHHHHHc-CCCH
Confidence 3456788888888888887777777755322111110000011223 35677777 466667777777777665 8999
Q ss_pred HHHHHHHHHHHHHHh
Q psy14735 292 GEIILRSCHVARQSL 306 (340)
Q Consensus 292 ~~a~~~a~~~Aa~~~ 306 (340)
++.+...........
T Consensus 139 ~eI~~~l~~~~~~~~ 153 (275)
T TIGR00762 139 EEILAKLEELRERTK 153 (275)
T ss_pred HHHHHHHHHHHhhcE
Confidence 999888776655443
No 174
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=23.76 E-value=5.2e+02 Score=22.92 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=30.8
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCcCCCCCHHHHHHHHhhccCCcEEEEeCCCC
Q psy14735 104 VTTGVCSKVISNKGTHQTNIIPGANTYLSASDIDAAKNLLLKAKVIMFQGETP 156 (340)
Q Consensus 104 ~~t~~~~i~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~i~~~~~ 156 (340)
.+.|..+.+.-.+|+.++++.......+..+.++.+. =+..++++++|+..
T Consensus 162 skLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~--e~~P~v~ii~GPpt 212 (304)
T COG2248 162 SKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFIL--EKRPDVLIIGGPPT 212 (304)
T ss_pred cccceEEEEEEecCCeEEEEcccccCCCccHHHHHHH--hcCCCEEEecCCch
Confidence 4555544444457877776544344456666666543 24788999988654
No 175
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=23.52 E-value=1.4e+02 Score=26.29 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=27.8
Q ss_pred CCHHHHHHHHhhccCCcEEEEeCC-CCHHHHHHHHHhchhcccCCceE-EEeCCCC
Q psy14735 131 LSASDIDAAKNLLLKAKVIMFQGE-TPWETTLYCLSKLHVSLESRAKI-IVNPSPA 184 (340)
Q Consensus 131 ~~~~~i~~~~~~~~~~~~v~i~~~-~~~~~~~~~~~~a~~~~~~~~~v-~~d~~~~ 184 (340)
+....+....+.++++|++++-|. ........+.+.+ +++|.++ ++|+.+.
T Consensus 190 lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a---~~~g~~viiIN~~~t 242 (260)
T cd01409 190 VPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAA---AEAGLPIAIVNIGPT 242 (260)
T ss_pred CCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHH---HHCCCcEEEEcCCCC
Confidence 344445555556677787666442 2223344555556 5566664 4677654
No 176
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=23.46 E-value=1.5e+02 Score=25.33 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=26.3
Q ss_pred CHHHHHHHHhhccCCcEEEEeCC-CCHHHHHHHHHhchhcccCCceE-EEeCCCC
Q psy14735 132 SASDIDAAKNLLLKAKVIMFQGE-TPWETTLYCLSKLHVSLESRAKI-IVNPSPA 184 (340)
Q Consensus 132 ~~~~i~~~~~~~~~~~~v~i~~~-~~~~~~~~~~~~a~~~~~~~~~v-~~d~~~~ 184 (340)
..+.++...+.++++|++++-|. ........+...+ ++.|.++ ++|+.+.
T Consensus 158 p~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a---~~~g~~~i~iN~~~~ 209 (222)
T cd01413 158 PQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIA---KENGAKLVIVNADET 209 (222)
T ss_pred CHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHH---HHcCCeEEEEcCCCC
Confidence 33344444455667777666442 2222344556666 6666654 4676653
No 177
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=23.41 E-value=1.5e+02 Score=21.24 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHhcCCceeEEEEecCChhhHHHHHHHhhhcCCcc
Q psy14735 51 SGKGANQCVAAAKLRASVALISKLGNDKFGKSYLEELRKYNSINT 95 (340)
Q Consensus 51 GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i~~~l~~~~gi~~ 95 (340)
+|.+...+..+...|.++.+.+.+|.. ..+.|++ .||+.
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~-----a~~~l~~-~gI~v 85 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGP-----AAAKLEA-AGIKP 85 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCcc-----HHHHHHH-cCCEE
Confidence 356778999999999999999998874 5677888 88874
No 178
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=22.50 E-value=61 Score=20.57 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=16.2
Q ss_pred CCCcchHHHHHHHHHHHc
Q psy14735 268 SEGVGDCFVGALAYYLCY 285 (340)
Q Consensus 268 ttGaGDaF~ag~~~~l~~ 285 (340)
+.|.+|+...|+++|++.
T Consensus 2 ~~G~~Daa~Tgi~~G~l~ 19 (53)
T PF11167_consen 2 TIGLGDAADTGILYGLLW 19 (53)
T ss_pred eeeccCHHHHHHHHHHHH
Confidence 359999999999999988
No 179
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=22.47 E-value=5.8e+02 Score=23.00 Aligned_cols=111 Identities=8% Similarity=-0.010 Sum_probs=58.2
Q ss_pred HHHHHHhhccCC-cEEEEeCC-CCHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhhcC
Q psy14735 135 DIDAAKNLLLKA-KVIMFQGE-TPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIITDM 212 (340)
Q Consensus 135 ~i~~~~~~~~~~-~~v~i~~~-~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~ 212 (340)
+++.+.+.+.++ .-+++.|. .+......+.... ...|.++.+-............+..-|++++= ...|.
T Consensus 35 ~l~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l---~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~i-----S~sG~ 106 (326)
T PRK10892 35 DFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATF---ASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAI-----SNSGE 106 (326)
T ss_pred HHHHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHH---hcCCceeEEeChHHhhccccccCCCCCEEEEE-----eCCCC
Confidence 455555555454 45655443 3334445555555 56777776532111100111223333433320 11232
Q ss_pred CCCChhhHHHHHHHHHhcCCCEEEEEecCCceEEEecCCCceEEEcc
Q psy14735 213 KINNEEDLADCMEKLLDMKCNTVIITLGGSGVVYATRDNPRLKTITV 259 (340)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~p~ 259 (340)
. .+..++++.+.++|++.+.+|.....-+....+ ....++.
T Consensus 107 t----~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad--~~l~~~~ 147 (326)
T PRK10892 107 S----SEILALIPVLKRLHVPLICITGRPESSMARAAD--IHLCVKV 147 (326)
T ss_pred C----HHHHHHHHHHHHCCCcEEEEECCCCCcccccCC--EEEEeCC
Confidence 2 577888898999999999999876655544333 3444444
No 180
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=22.19 E-value=3.4e+02 Score=24.08 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=50.6
Q ss_pred HHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHHhh-----cCC----------CCChhhHHHHH
Q psy14735 160 TLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEIIT-----DMK----------INNEEDLADCM 224 (340)
Q Consensus 160 ~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~l~-----~~~----------~~~~~~~~~~~ 224 (340)
-..+++.++ .++|.+++......- .+....+++|+|-+...-+..+. |.. -.+.+++..++
T Consensus 97 gL~~l~~a~--~~~Gl~vvtEvm~~~--~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AA 172 (286)
T COG2876 97 GLKLLKRAA--DETGLPVVTEVMDVR--DVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAA 172 (286)
T ss_pred HHHHHHHHH--HHcCCeeEEEecCHH--HHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHH
Confidence 344444432 788999886543321 33567778888876544433221 111 13568999999
Q ss_pred HHHHhcCCCEEEEEecCCceEEEecC
Q psy14735 225 EKLLDMKCNTVIITLGGSGVVYATRD 250 (340)
Q Consensus 225 ~~l~~~g~~~vvvt~G~~G~~~~~~~ 250 (340)
+++...|...||+- +.|+.-++..
T Consensus 173 EYI~s~GN~~vILC--ERGIRtfe~~ 196 (286)
T COG2876 173 EYILSHGNGNVILC--ERGIRTFEKA 196 (286)
T ss_pred HHHHhCCCCcEEEE--eccccccccc
Confidence 99999887665542 4566555443
No 181
>PRK06197 short chain dehydrogenase; Provisional
Probab=22.18 E-value=1.7e+02 Score=26.13 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=19.1
Q ss_pred CChHHHHHHHHHhcCCceeEEEE
Q psy14735 51 SGKGANQCVAAAKLRASVALISK 73 (340)
Q Consensus 51 GG~~~n~a~~l~~lG~~v~~~~~ 73 (340)
||-|..++..|++.|.++.+++.
T Consensus 26 ~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 26 TGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred CcHHHHHHHHHHHCCCEEEEEeC
Confidence 68899999999999998776654
No 182
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=22.05 E-value=1.4e+02 Score=24.21 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=29.2
Q ss_pred ecCChHHHHHHHHHhcCCceeEEEEecCChhhHHH---HHHHhhhcCCc
Q psy14735 49 RFSGKGANQCVAAAKLRASVALISKLGNDKFGKSY---LEELRKYNSIN 94 (340)
Q Consensus 49 ~~GG~~~n~a~~l~~lG~~v~~~~~vG~D~~g~~i---~~~l~~~~gi~ 94 (340)
.-||.|.-.|+.|++.|.+|.++..-..+...+.. .+.+++ .|+.
T Consensus 36 nNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~-~g~~ 83 (169)
T PF03853_consen 36 NNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKK-MGIK 83 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHH-TT-E
T ss_pred CChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHh-cCCc
Confidence 35788999999999999999885554433334444 344455 5543
No 183
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.95 E-value=1.2e+02 Score=30.26 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=17.2
Q ss_pred cCChHHHHHHHHHhcCCceeEEE
Q psy14735 50 FSGKGANQCVAAAKLRASVALIS 72 (340)
Q Consensus 50 ~GG~~~n~a~~l~~lG~~v~~~~ 72 (340)
.|+.|.-.|+.+++.|.+|.++.
T Consensus 11 ~G~AGl~AAi~Aa~~G~~V~lie 33 (589)
T PRK08641 11 GGLAGLMATIKAAEAGVHVDLFS 33 (589)
T ss_pred chHHHHHHHHHHHHcCCcEEEEE
Confidence 36667777888888888887775
No 184
>PRK05968 hypothetical protein; Provisional
Probab=21.89 E-value=6.6e+02 Score=23.45 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=24.8
Q ss_pred ccCCcEEEEeCCC----CHHHHHHHHHhchhcccCCceEEEeCC
Q psy14735 143 LLKAKVIMFQGET----PWETTLYCLSKLHVSLESRAKIIVNPS 182 (340)
Q Consensus 143 ~~~~~~v~i~~~~----~~~~~~~~~~~a~~~~~~~~~v~~d~~ 182 (340)
+++.++|++.... ...-+.++.+.+ +++++++++|-.
T Consensus 145 i~~tklV~ie~pt~~~~~~~dl~~i~~la---~~~gi~vivD~a 185 (389)
T PRK05968 145 LPGAKLLYLESPTSWVFELQDVAALAALA---KRHGVVTMIDNS 185 (389)
T ss_pred cccCCEEEEECCCCCCCcHHHHHHHHHHH---HHcCCEEEEECC
Confidence 4566777775432 235567777888 788888888764
No 185
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=21.86 E-value=3.8e+02 Score=20.67 Aligned_cols=34 Identities=9% Similarity=-0.085 Sum_probs=25.5
Q ss_pred hccCCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEE
Q psy14735 142 LLLKAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIV 179 (340)
Q Consensus 142 ~~~~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~ 179 (340)
.++++|+++.+... .+....+.+.+ +++++|++.
T Consensus 86 ~~~~~diVi~~~d~-~~~~~~l~~~~---~~~~i~~i~ 119 (143)
T cd01483 86 FLDGVDLVIDAIDN-IAVRRALNRAC---KELGIPVID 119 (143)
T ss_pred HhcCCCEEEECCCC-HHHHHHHHHHH---HHcCCCEEE
Confidence 46788988876554 56677888888 888888764
No 186
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=21.72 E-value=5.6e+02 Score=22.62 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHhhccCCcEEEEeCCCCH---HHHHHHHHhchhcccCCceEEEeCC
Q psy14735 130 YLSASDIDAAKNLLLKAKVIMFQGETPW---ETTLYCLSKLHVSLESRAKIIVNPS 182 (340)
Q Consensus 130 ~~~~~~i~~~~~~~~~~~~v~i~~~~~~---~~~~~~~~~a~~~~~~~~~v~~d~~ 182 (340)
.+++++++.....-.+..++++..+.+. .-+.++.+.+ +++++++++|-.
T Consensus 139 ~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~---~~~g~~livDeA 191 (294)
T cd00615 139 GIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEA---HHRGLPVLVDEA 191 (294)
T ss_pred CCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHH---HhcCCeEEEECc
Confidence 4677777664322235677777643221 1256788888 889999999965
No 187
>PRK06444 prephenate dehydrogenase; Provisional
Probab=21.72 E-value=4.6e+02 Score=21.99 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=17.8
Q ss_pred eeEEEEecCChhhHHHHHHHhhhcCCc
Q psy14735 68 VALISKLGNDKFGKSYLEELRKYNSIN 94 (340)
Q Consensus 68 v~~~~~vG~D~~g~~i~~~l~~~~gi~ 94 (340)
+.++|.. ...|+++.+.|++ .|..
T Consensus 3 ~~iiG~~--G~mG~~~~~~~~~-~g~~ 26 (197)
T PRK06444 3 EIIIGKN--GRLGRVLCSILDD-NGLG 26 (197)
T ss_pred EEEEecC--CcHHHHHHHHHHh-CCCE
Confidence 4455543 4589999999999 8865
No 188
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=21.66 E-value=2.3e+02 Score=28.59 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHhhccCCcEEEEeCCCC-HHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHH
Q psy14735 130 YLSASDIDAAKNLLLKAKVIMFQGETP-WETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEI 208 (340)
Q Consensus 130 ~~~~~~i~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~ 208 (340)
.++.+.++.+.+.+.+++-|++.|.-. .-+...+.... ...+.++..-............+..-|++++ -.
T Consensus 452 ~id~~~l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l---~~lg~~~~~~~d~~~~~~~~~~l~~~DvvI~-----iS 523 (638)
T PRK14101 452 HLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKF---FRFGIPTIAYGDLYMQAASAALLGKGDVIVA-----VS 523 (638)
T ss_pred hcCHHHHHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHH---hcCCceEEEcCCHHHHHHHHhcCCCCCEEEE-----Ee
Confidence 456666666666777777777765432 22333333333 4455554432111100000112333344433 01
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCCCEEEEEe
Q psy14735 209 ITDMKINNEEDLADCMEKLLDMKCNTVIITL 239 (340)
Q Consensus 209 l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~ 239 (340)
..|. ..+..++++...++|++.+.||.
T Consensus 524 ~sG~----t~e~i~~~~~Ak~~Ga~vIaIT~ 550 (638)
T PRK14101 524 KSGR----APELLRVLDVAMQAGAKVIAITS 550 (638)
T ss_pred CCCC----CHHHHHHHHHHHHCCCeEEEEcC
Confidence 1222 14677888888889999999997
No 189
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=21.61 E-value=6.7e+02 Score=23.42 Aligned_cols=36 Identities=8% Similarity=0.077 Sum_probs=22.3
Q ss_pred cCCcEEEEeCCCC----HHHHHHHHHhchhcccCCceEEEeCC
Q psy14735 144 LKAKVIMFQGETP----WETTLYCLSKLHVSLESRAKIIVNPS 182 (340)
Q Consensus 144 ~~~~~v~i~~~~~----~~~~~~~~~~a~~~~~~~~~v~~d~~ 182 (340)
.+.++|++..... ..-+.++.+.+ +++++++++|-.
T Consensus 145 ~~tklV~ie~p~NptG~v~dl~~I~~la---~~~gi~livD~t 184 (390)
T PRK08133 145 PNTKLFFLETPSNPLTELADIAALAEIA---HAAGALLVVDNC 184 (390)
T ss_pred cCCeEEEEECCCCCCCCcCCHHHHHHHH---HHcCCEEEEECC
Confidence 3466777643221 11246777778 788888888864
No 190
>PRK08114 cystathionine beta-lyase; Provisional
Probab=21.56 E-value=6.9e+02 Score=23.57 Aligned_cols=53 Identities=13% Similarity=0.042 Sum_probs=27.7
Q ss_pred ceeeecCChHHHHHHHHHhcCC-ceeEEEEecCChhhHHHHHHHhhhcCCcccce
Q psy14735 45 HFEQRFSGKGANQCVAAAKLRA-SVALISKLGNDKFGKSYLEELRKYNSINTKYI 98 (340)
Q Consensus 45 ~~~~~~GG~~~n~a~~l~~lG~-~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v 98 (340)
.....+.|.++..+..++.+.. +..+++.-.-...-..+.+.+++ .||++.++
T Consensus 79 ~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~-~Gi~v~~v 132 (395)
T PRK08114 79 GCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSK-LGVTTTWF 132 (395)
T ss_pred eEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHh-cCcEEEEE
Confidence 3445667777777666666643 22233221211122334456788 88876554
No 191
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=21.44 E-value=3.6e+02 Score=22.16 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=36.7
Q ss_pred cCCcEEEEe--------CCCCHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEE
Q psy14735 144 LKAKVIMFQ--------GETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC 200 (340)
Q Consensus 144 ~~~~~v~i~--------~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~ 200 (340)
.++|+++++ +.++.+.+.++++. +..+..|++.-+... .++++.+|.++
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~----rp~~~evVlTGR~~p----~~l~e~AD~VT 152 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQE----RPGHQHVIITGRGCP----QDLLELADLVT 152 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHh----CCCCCEEEEECCCCC----HHHHHhCceee
Confidence 568999995 56677777777765 455678888877654 58888999875
No 192
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=21.42 E-value=2.2e+02 Score=22.56 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=15.1
Q ss_pred HHHHHHHHhchhcccCCceEEEe
Q psy14735 158 ETTLYCLSKLHVSLESRAKIIVN 180 (340)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~v~~d 180 (340)
+.+.++++.+ ++.|.||++-
T Consensus 23 ~~i~~l~~~a---r~~g~pVi~~ 42 (157)
T cd01012 23 NNTVKLAKAA---KLLDVPVILT 42 (157)
T ss_pred HHHHHHHHHH---HhcCCCEEEE
Confidence 3467777788 8899998863
No 193
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=21.29 E-value=2.5e+02 Score=23.72 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=25.0
Q ss_pred HHHHHhhccCCcEEEEeCC-CCHHHHHHHHHhchhcccCCceEE-EeCCCC
Q psy14735 136 IDAAKNLLLKAKVIMFQGE-TPWETTLYCLSKLHVSLESRAKII-VNPSPA 184 (340)
Q Consensus 136 i~~~~~~~~~~~~v~i~~~-~~~~~~~~~~~~a~~~~~~~~~v~-~d~~~~ 184 (340)
++...+.++++|++++-|. ........+...+ ++.|.+++ +|+.+.
T Consensus 146 ~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~---~~~g~~vi~iN~~~~ 193 (206)
T cd01410 146 WMGAAAAACRADLFLCLGTSLQVTPAANLPLKA---ARAGGRLVIVNLQPT 193 (206)
T ss_pred HHHHHHHHhcCCEEEEECcCceehhHHHHHHHH---HhcCCeEEEECCCCC
Confidence 4444455667777666442 2223344455556 66666654 576654
No 194
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=21.21 E-value=1.5e+02 Score=25.15 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=26.8
Q ss_pred CcchHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy14735 270 GVGDCFVGALAYYLCYFPQLPLGEIILRSCH 300 (340)
Q Consensus 270 GaGDaF~ag~~~~l~~~~g~~~~~a~~~a~~ 300 (340)
-.||.+++..-++... |.++++|++.++.
T Consensus 165 E~GDlLFalvn~aR~~--~idpE~ALr~an~ 193 (204)
T PRK12333 165 GVAEALWAVVAWARAE--GIDPEIALRERTE 193 (204)
T ss_pred cHHHHHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 6899999999999999 9999999998875
No 195
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.20 E-value=2.8e+02 Score=25.75 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=49.5
Q ss_pred HHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEEeCHHHHHH------hh--cCC------CC-ChhhHHH
Q psy14735 158 ETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIICINEQEAEI------IT--DMK------IN-NEEDLAD 222 (340)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~~n~~E~~~------l~--~~~------~~-~~~~~~~ 222 (340)
+.+..+.+.. ++.|.+++-++.... ....+.+.+|++.+-..++.. +. +.. .. +.+++..
T Consensus 152 ~gl~~L~~~~---~e~Gl~~~tev~d~~--~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~ 226 (352)
T PRK13396 152 SALELLAAAR---EATGLGIITEVMDAA--DLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLM 226 (352)
T ss_pred HHHHHHHHHH---HHcCCcEEEeeCCHH--HHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHH
Confidence 3344444445 789999988776543 334556678888866554432 22 111 22 6789999
Q ss_pred HHHHHHhcCCCEEEEE-ecC
Q psy14735 223 CMEKLLDMKCNTVIIT-LGG 241 (340)
Q Consensus 223 ~~~~l~~~g~~~vvvt-~G~ 241 (340)
+++++.+.|.+.+++. +|-
T Consensus 227 A~e~i~~~Gn~~viL~erG~ 246 (352)
T PRK13396 227 AAEYILAAGNPNVILCERGI 246 (352)
T ss_pred HHHHHHHcCCCeEEEEecCC
Confidence 9999998887654444 444
No 196
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=21.19 E-value=4.4e+02 Score=21.29 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=36.0
Q ss_pred cCCcEEEEe--------CCCCHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEE
Q psy14735 144 LKAKVIMFQ--------GETPWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC 200 (340)
Q Consensus 144 ~~~~~v~i~--------~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~ 200 (340)
.++|+++++ +.++.+.+.++++.. ..+..+++..+... .++++.+|.++
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r----p~~~evIlTGr~~p----~~l~e~AD~VT 150 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAK----PEDLELVLTGRNAP----KELIEAADLVT 150 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcC----CCCCEEEEECCCCC----HHHHHhCceee
Confidence 568999996 455667777777764 44677888877654 58888888875
No 197
>PRK09330 cell division protein FtsZ; Validated
Probab=21.08 E-value=7e+02 Score=23.48 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=64.2
Q ss_pred eecCChHHHHHHHHHhcCC-ceeEEEEecCChhhHHHHHHHhhhcCCcccceEeeCCCCCceEEEEEcCCCCeEEEEeCC
Q psy14735 48 QRFSGKGANQCVAAAKLRA-SVALISKLGNDKFGKSYLEELRKYNSINTKYIWLLQDVTTGVCSKVISNKGTHQTNIIPG 126 (340)
Q Consensus 48 ~~~GG~~~n~a~~l~~lG~-~v~~~~~vG~D~~g~~i~~~l~~~~gi~~~~v~~~~~~~t~~~~i~~~~~g~~~~~~~~~ 126 (340)
..+||.|.|+.-.+.+.|. .+.|+.. -.|. +.|.+ ...+.. +.+ +.... .|. -.+
T Consensus 19 iGvGG~G~Nav~~m~~~~~~~v~fia~-NTD~------q~L~~-~~a~~k-i~l--G~~~t--------~Gl-----GaG 74 (384)
T PRK09330 19 IGVGGGGGNAVNRMIEEGIQGVEFIAA-NTDA------QALLK-SKAPVK-IQL--GEKLT--------RGL-----GAG 74 (384)
T ss_pred EEECCcHHHHHHHHHHcCCCCceEEEE-eCcH------HHHhc-CCCCeE-EEc--CCccc--------ccC-----CCC
Confidence 5689999999999999885 4554443 4442 24444 222211 111 11100 010 011
Q ss_pred cCCCC----CHHHHHHHHhhccCCcEEEEeC----CCCHHHHHHHHHhchhcccCCceEE-EeCCCCCC----------C
Q psy14735 127 ANTYL----SASDIDAAKNLLLKAKVIMFQG----ETPWETTLYCLSKLHVSLESRAKII-VNPSPAVY----------P 187 (340)
Q Consensus 127 ~~~~~----~~~~i~~~~~~~~~~~~v~i~~----~~~~~~~~~~~~~a~~~~~~~~~v~-~d~~~~~~----------~ 187 (340)
.++.+ -.+..+.+.+.++.+|.+++.. -.-.....-+.+.+ ++.+.+++ +=+.|+.. .
T Consensus 75 ~~pe~G~~aaee~~e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~ia---ke~g~ltvaVvt~PF~fEG~~r~~nA~~ 151 (384)
T PRK09330 75 ANPEVGRKAAEESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIA---KELGILTVAVVTKPFSFEGKKRMKQAEE 151 (384)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHH---HHcCCcEEEEEecCccccchhHHHHHHH
Confidence 22222 2333445556689999987742 22234444556777 77776643 33333322 2
Q ss_pred CchhhhhcCcEEE
Q psy14735 188 LNPIVMILADIIC 200 (340)
Q Consensus 188 ~~~~~l~~~dil~ 200 (340)
.+..+.+.+|.++
T Consensus 152 gL~~L~~~~D~vI 164 (384)
T PRK09330 152 GIEELRKHVDTLI 164 (384)
T ss_pred HHHHHHHHCCEEE
Confidence 3456777888544
No 198
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=21.02 E-value=5.3e+02 Score=22.00 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=51.4
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhchhcccCCceEEEeCCCCCC--------CCchhhhhc-CcEEEeCHHHHHHhhcCCCC
Q psy14735 145 KAKVIMFQGETPWETTLYCLSKLHVSLESRAKIIVNPSPAVY--------PLNPIVMIL-ADIICINEQEAEIITDMKIN 215 (340)
Q Consensus 145 ~~~~v~i~~~~~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~--------~~~~~~l~~-~dil~~n~~E~~~l~~~~~~ 215 (340)
.++++=+....+.+...++++.+ ++.+.+++.....+.. ......... +|++++--. ..
T Consensus 92 ~~d~vDiEl~~~~~~~~~l~~~~---~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~---------a~ 159 (228)
T TIGR01093 92 GPDFVDIELFLPDDAVKELINIA---KKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVM---------AN 159 (228)
T ss_pred CCCEEEEEccCCHHHHHHHHHHH---HHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEec---------cC
Confidence 36888888777778888888888 7788899887654321 111122222 566654110 11
Q ss_pred ChhhHHHHHH---HHHhc-CCCEEEEEecCCceE
Q psy14735 216 NEEDLADCME---KLLDM-KCNTVIITLGGSGVV 245 (340)
Q Consensus 216 ~~~~~~~~~~---~l~~~-g~~~vvvt~G~~G~~ 245 (340)
+.+|...... ++.+. ..+.+.+.+|+.|.+
T Consensus 160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~ 193 (228)
T TIGR01093 160 SKEDVLTLLEITNKVDEHADVPLITMSMGDRGKI 193 (228)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChh
Confidence 2233333222 22222 357899999999864
No 199
>KOG0053|consensus
Probab=20.98 E-value=3.1e+02 Score=26.02 Aligned_cols=48 Identities=6% Similarity=0.055 Sum_probs=28.3
Q ss_pred CCHHHHHHHHhhccC-CcEEEEeCCCCH----HHHHHHHHhchhcccCCceEEEeC
Q psy14735 131 LSASDIDAAKNLLLK-AKVIMFQGETPW----ETTLYCLSKLHVSLESRAKIIVNP 181 (340)
Q Consensus 131 ~~~~~i~~~~~~~~~-~~~v~i~~~~~~----~~~~~~~~~a~~~~~~~~~v~~d~ 181 (340)
++.++++.+.+.+++ .++|++..+..| .-+.++.+.+ +++|..+++|-
T Consensus 147 vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la---~~~g~~vvVDn 199 (409)
T KOG0053|consen 147 VDVDDLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLA---HKYGFLVVVDN 199 (409)
T ss_pred echhhHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHH---hhCCCEEEEeC
Confidence 344555555555655 677777554321 1145666677 77788877774
No 200
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.90 E-value=6.6e+02 Score=25.55 Aligned_cols=83 Identities=25% Similarity=0.290 Sum_probs=41.2
Q ss_pred ccCCcEEEEeCCCCHHH---HHHHHHhchhcccCCce-EEEeCCCCCC----CCchhhhhcCcE----------EEeCHH
Q psy14735 143 LLKAKVIMFQGETPWET---TLYCLSKLHVSLESRAK-IIVNPSPAVY----PLNPIVMILADI----------ICINEQ 204 (340)
Q Consensus 143 ~~~~~~v~i~~~~~~~~---~~~~~~~a~~~~~~~~~-v~~d~~~~~~----~~~~~~l~~~di----------l~~n~~ 204 (340)
++.+|+|++-|.-+.+. ....+..++ +++|.+ |++||+...- +..-.+-+..|+ +.-+.+
T Consensus 167 i~nAd~Ili~GsNpae~hPv~~~~i~~Ak--~~~GaklIvVDPR~t~Ta~~AD~~l~irPGTD~All~gmi~~ii~ytpe 244 (649)
T cd02752 167 IKNADVILVMGGNPAEAHPVSFKWILEAK--EKNGAKLIVVDPRFTRTAAKADLYVPIRSGTDIAFLGGMINYIIRYTPE 244 (649)
T ss_pred HhcCCEEEEECCChHHhCcHHHHHHHHHH--HcCCCeEEEEcCCCCchhHhcCEeeCcCCChHHHHHHHHHHHHHhCCHH
Confidence 56789988866544322 223333441 333766 5579975421 000001111111 112455
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHhc
Q psy14735 205 EAEIITDMKINNEEDLADCMEKLLDM 230 (340)
Q Consensus 205 E~~~l~~~~~~~~~~~~~~~~~l~~~ 230 (340)
.++.++|.. .+++.++++.+.+.
T Consensus 245 ~v~~itGvp---~e~I~~~A~~~a~a 267 (649)
T cd02752 245 EVEDICGVP---KEDFLKVAEMFAAT 267 (649)
T ss_pred HHHHHHCcC---HHHHHHHHHHHHhc
Confidence 666677753 35677888877764
No 201
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=20.49 E-value=6.6e+02 Score=22.90 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=51.3
Q ss_pred cEEEEe--CCC-CHHHHHHHHHhchhcccCCceEEEeCCCCCCCCchhhhhcCcEEE-----eCHHHHHHhhcC-CCCCh
Q psy14735 147 KVIMFQ--GET-PWETTLYCLSKLHVSLESRAKIIVNPSPAVYPLNPIVMILADIIC-----INEQEAEIITDM-KINNE 217 (340)
Q Consensus 147 ~~v~i~--~~~-~~~~~~~~~~~a~~~~~~~~~v~~d~~~~~~~~~~~~l~~~dil~-----~n~~E~~~l~~~-~~~~~ 217 (340)
+.+.++ |+. ....+.++++.+ ++.|+.+.++..+...+.+..+....|.+. ++++....+.+. ...+-
T Consensus 131 ~~v~iSl~GEPlL~p~l~eli~~~---k~~Gi~~~L~TNG~~~e~l~~L~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~ 207 (322)
T PRK13762 131 KHVAISLSGEPTLYPYLPELIEEF---HKRGFTTFLVTNGTRPDVLEKLEEEPTQLYVSLDAPDEETYKKINRPVIPDAW 207 (322)
T ss_pred CEEEEeCCccccchhhHHHHHHHH---HHcCCCEEEECCCCCHHHHHHHHhcCCEEEEEccCCCHHHHHHHhCCCCCCcH
Confidence 445554 332 233577888999 888999999888765433444434445443 344445555542 11234
Q ss_pred hhHHHHHHHHHhcCCCEEE
Q psy14735 218 EDLADCMEKLLDMKCNTVI 236 (340)
Q Consensus 218 ~~~~~~~~~l~~~g~~~vv 236 (340)
+.+.+.++.+.+.+.+.++
T Consensus 208 ~~vl~~L~~l~~~~~~~~i 226 (322)
T PRK13762 208 ERILETLELLPSKKTRTVI 226 (322)
T ss_pred HHHHHHHHHHHhCCCCEEE
Confidence 5667777777777655533
Done!