BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14736
         (85 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZXA|A Chain A, Solution Structure Of The Coiled-Coil Domain Of Cgmp-
          Dependent Protein Kinase Ia
 pdb|1ZXA|B Chain B, Solution Structure Of The Coiled-Coil Domain Of Cgmp-
          Dependent Protein Kinase Ia
          Length = 67

 Score = 36.6 bits (83), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 8  DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMN 61
          ++   IL  KE +I+ELE+++  + EEI +L+  L K QSV     PV  TH+ 
Sbjct: 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL----PVPSTHIG 63


>pdb|3DXL|A Chain A, Crystal Structure Of Aed7 From Aedes Aegypti
 pdb|3DY9|A Chain A, Crystal Structure Of Aed7 Potassium Bromide Soak
 pdb|3DYE|A Chain A, Crystal Structure Of Aed7-norepineprhine Complex
 pdb|3DZT|A Chain A, Aed7-Leukotriene E4 Complex
          Length = 303

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 12  SILQAKESKIRELEEKVKVQN--EEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLARP 69
           S++Q +      L EK KV+     + QL S  +   +VF  ++PV   H + + NL   
Sbjct: 71  SVIQEQFKAYPSLGEKSKVEAYANAVKQLPSTNNDCAAVFKAYDPVHKAHKDTSKNLFHG 130

Query: 70  RKQRAQGI 77
            K+  +G+
Sbjct: 131 NKELTKGL 138


>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
           Prokaryotic Condensin
 pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
           Prokaryotic Condensin
          Length = 426

 Score = 26.6 bits (57), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 25  EEKVKVQNEEIVQLRSHLDK-FQSVF 49
           EE  K  N+  VQ+RSH D+ F+S+F
Sbjct: 267 EEMTKRFNDTFVQIRSHFDQVFRSLF 292


>pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus
           Mutans
          Length = 755

 Score = 26.2 bits (56), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 16/88 (18%)

Query: 1   MGTVHTVDEMQSILQAKESKIRELEEKVKVQNEEIVQL---RSHLDKFQS---------- 47
           + T    DE Q       SK  E+ + ++  + +++ +   RSH D  +S          
Sbjct: 618 IATSSVKDETQIHTHMCYSKFDEIIDAIRALDADVISIETSRSHGDIIESFETAVYPLGI 677

Query: 48  ---VFPYHNPVSPTHMNNNINLARPRKQ 72
              V+  H+P  PT      N+ RP +Q
Sbjct: 678 GLGVYDIHSPRVPTKEEVVANIERPLRQ 705


>pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans
 pdb|3T0C|A Chain A, Crystal Structure Of Streptococcus Mutans Mete Complexed
           With Zinc
          Length = 779

 Score = 25.8 bits (55), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 16/88 (18%)

Query: 1   MGTVHTVDEMQSILQAKESKIRELEEKVKVQNEEIVQL---RSHLDKFQS---------- 47
           + T    DE Q       SK  E+ + ++  + +++ +   RSH D  +S          
Sbjct: 650 IATSSVKDETQIHTHMCYSKFDEIIDAIRALDADVISIETSRSHGDIIESFETAVYPLGI 709

Query: 48  ---VFPYHNPVSPTHMNNNINLARPRKQ 72
              V+  H+P  PT      N+ RP +Q
Sbjct: 710 GLGVYDIHSPRVPTKEEVVANIERPLRQ 737


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,511,552
Number of Sequences: 62578
Number of extensions: 80448
Number of successful extensions: 276
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 11
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)