Query psy14736
Match_columns 85
No_of_seqs 78 out of 80
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 19:19:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0614|consensus 98.1 8.6E-06 1.9E-10 67.7 6.4 38 13-50 39-76 (732)
2 PF04859 DUF641: Plant protein 95.8 0.042 9E-07 38.0 6.0 42 6-47 81-122 (131)
3 PF05983 Med7: MED7 protein; 92.7 0.23 5.1E-06 34.9 4.4 35 15-49 127-161 (162)
4 PF04102 SlyX: SlyX; InterPro 91.5 1.4 3.1E-05 26.7 6.3 45 8-52 7-51 (69)
5 PF08826 DMPK_coil: DMPK coile 91.1 1.7 3.8E-05 26.3 6.3 35 13-47 26-60 (61)
6 PRK00295 hypothetical protein; 90.2 2 4.2E-05 26.3 6.1 43 7-49 7-49 (68)
7 PF11365 DUF3166: Protein of u 89.7 2.2 4.7E-05 28.1 6.3 47 7-53 3-49 (96)
8 PRK00736 hypothetical protein; 89.5 2.4 5.2E-05 25.9 6.1 43 7-49 7-49 (68)
9 PRK04406 hypothetical protein; 89.3 2.4 5.2E-05 26.4 6.1 42 8-49 14-55 (75)
10 PRK04325 hypothetical protein; 88.9 2.7 5.8E-05 26.0 6.1 40 8-47 12-51 (74)
11 PRK02793 phi X174 lysis protei 88.8 2.8 6.1E-05 25.8 6.1 42 8-49 11-52 (72)
12 PRK02119 hypothetical protein; 88.6 3 6.4E-05 25.8 6.1 42 8-49 12-53 (73)
13 PF15290 Syntaphilin: Golgi-lo 88.0 1.9 4.1E-05 33.6 5.9 17 33-49 124-140 (305)
14 PF04977 DivIC: Septum formati 86.8 2.4 5.3E-05 25.1 4.9 32 15-46 20-51 (80)
15 PF04568 IATP: Mitochondrial A 86.6 3.5 7.7E-05 27.2 5.9 35 9-43 62-100 (100)
16 PHA03011 hypothetical protein; 86.2 3.2 6.9E-05 28.1 5.6 40 10-49 76-115 (120)
17 PRK03947 prefoldin subunit alp 84.6 3.1 6.7E-05 27.8 5.0 42 8-49 90-131 (140)
18 PF12329 TMF_DNA_bd: TATA elem 84.4 4.3 9.4E-05 25.1 5.3 11 14-24 7-17 (74)
19 PRK00846 hypothetical protein; 84.0 6.9 0.00015 24.7 6.1 36 8-43 16-51 (77)
20 PF11544 Spc42p: Spindle pole 83.6 1.8 3.8E-05 27.6 3.2 30 21-50 7-36 (76)
21 KOG4552|consensus 82.5 4 8.8E-05 31.0 5.3 35 15-49 70-104 (272)
22 COG3883 Uncharacterized protei 82.4 5.2 0.00011 30.7 6.0 41 8-48 48-88 (265)
23 TIGR01242 26Sp45 26S proteasom 82.3 5.1 0.00011 30.6 6.0 40 9-48 3-42 (364)
24 TIGR02209 ftsL_broad cell divi 81.8 7.6 0.00016 23.5 5.6 36 12-47 24-59 (85)
25 PF13815 Dzip-like_N: Iguana/D 81.8 5.9 0.00013 26.1 5.4 35 8-42 83-117 (118)
26 PRK11637 AmiB activator; Provi 81.5 4.5 9.8E-05 31.8 5.6 40 10-49 87-126 (428)
27 PF09726 Macoilin: Transmembra 81.5 5.3 0.00012 34.1 6.3 46 8-53 618-663 (697)
28 PF07106 TBPIP: Tat binding pr 81.4 5.5 0.00012 27.5 5.4 35 15-49 75-109 (169)
29 PRK00888 ftsB cell division pr 81.4 5.2 0.00011 26.2 5.0 33 15-47 30-62 (105)
30 COG2433 Uncharacterized conser 81.4 5.2 0.00011 34.1 6.1 42 8-49 425-466 (652)
31 PF12329 TMF_DNA_bd: TATA elem 81.2 2.4 5.3E-05 26.2 3.2 25 23-47 2-26 (74)
32 cd00890 Prefoldin Prefoldin is 80.7 5 0.00011 25.8 4.7 42 8-49 83-124 (129)
33 cd00632 Prefoldin_beta Prefold 80.5 10 0.00022 24.3 6.1 30 16-45 74-103 (105)
34 COG1730 GIM5 Predicted prefold 80.1 8.7 0.00019 26.9 6.0 49 4-52 5-53 (145)
35 cd00584 Prefoldin_alpha Prefol 78.9 4.8 0.0001 26.4 4.3 42 8-49 83-124 (129)
36 PF10018 Med4: Vitamin-D-recep 78.8 7.6 0.00016 27.5 5.5 35 15-49 25-59 (188)
37 PF08172 CASP_C: CASP C termin 78.7 4.7 0.0001 30.3 4.6 33 16-48 90-122 (248)
38 PF07716 bZIP_2: Basic region 78.6 9.4 0.0002 21.8 5.0 32 15-46 21-52 (54)
39 PF00170 bZIP_1: bZIP transcri 78.5 8.6 0.00019 22.5 4.9 31 16-46 23-53 (64)
40 PRK00736 hypothetical protein; 78.0 5.2 0.00011 24.4 3.9 15 21-35 7-21 (68)
41 PRK00295 hypothetical protein; 77.6 5.5 0.00012 24.3 3.9 31 15-45 22-52 (68)
42 smart00338 BRLZ basic region l 77.3 9.5 0.00021 22.3 4.9 31 16-46 23-53 (65)
43 PF02996 Prefoldin: Prefoldin 77.0 8.4 0.00018 24.6 4.9 41 9-49 74-114 (120)
44 TIGR00293 prefoldin, archaeal 77.0 6.1 0.00013 25.8 4.3 42 8-49 82-123 (126)
45 PRK02793 phi X174 lysis protei 77.0 5.8 0.00013 24.4 3.9 19 20-38 9-27 (72)
46 COG2900 SlyX Uncharacterized p 76.7 7 0.00015 24.6 4.2 30 14-43 17-46 (72)
47 PF11819 DUF3338: Domain of un 76.5 23 0.0005 24.7 7.8 63 9-78 29-91 (138)
48 KOG3119|consensus 76.3 8.7 0.00019 28.9 5.5 39 15-53 218-256 (269)
49 smart00338 BRLZ basic region l 76.0 13 0.00029 21.7 5.3 36 13-48 27-62 (65)
50 PRK00846 hypothetical protein; 75.8 7.1 0.00015 24.7 4.2 31 16-46 10-40 (77)
51 KOG3088|consensus 75.6 3.2 7E-05 32.5 3.1 28 11-38 66-93 (313)
52 PRK10884 SH3 domain-containing 75.3 14 0.0003 27.0 6.1 38 9-46 122-159 (206)
53 PTZ00454 26S protease regulato 74.4 13 0.00028 29.4 6.2 39 10-48 27-65 (398)
54 PF06698 DUF1192: Protein of u 74.3 7.3 0.00016 23.5 3.8 26 21-46 23-48 (59)
55 PF08614 ATG16: Autophagy prot 73.6 17 0.00038 25.7 6.2 39 8-46 119-157 (194)
56 PF05529 Bap31: B-cell recepto 73.4 10 0.00022 26.6 4.9 31 16-46 158-188 (192)
57 cd01106 HTH_TipAL-Mta Helix-Tu 73.3 15 0.00034 23.1 5.4 40 8-47 61-101 (103)
58 PF12240 Angiomotin_C: Angiomo 72.8 7.4 0.00016 28.9 4.2 32 15-46 139-170 (205)
59 PRK04325 hypothetical protein; 72.3 20 0.00044 22.1 6.2 20 20-39 10-29 (74)
60 COG2433 Uncharacterized conser 72.0 10 0.00022 32.5 5.3 33 14-46 476-508 (652)
61 PF12709 Kinetocho_Slk19: Cent 71.8 10 0.00023 24.6 4.3 32 16-47 46-77 (87)
62 PRK03947 prefoldin subunit alp 71.8 21 0.00045 23.7 6.0 45 5-49 6-50 (140)
63 PF04880 NUDE_C: NUDE protein, 71.7 9.5 0.00021 27.3 4.5 37 6-42 1-47 (166)
64 PF07544 Med9: RNA polymerase 71.5 8.8 0.00019 24.0 3.9 27 21-47 54-80 (83)
65 PF06717 DUF1202: Protein of u 70.8 8.3 0.00018 30.2 4.3 39 8-46 141-179 (308)
66 PF04859 DUF641: Plant protein 70.5 13 0.00029 25.6 4.9 31 8-38 97-127 (131)
67 PF04394 DUF536: Protein of un 70.4 6 0.00013 22.6 2.6 32 13-44 4-35 (45)
68 PF08581 Tup_N: Tup N-terminal 69.7 25 0.00055 22.1 5.6 23 22-44 53-75 (79)
69 PF15619 Lebercilin: Ciliary p 69.6 22 0.00047 25.7 6.0 42 8-49 71-112 (194)
70 PF07544 Med9: RNA polymerase 69.6 13 0.00028 23.3 4.3 27 16-42 56-82 (83)
71 PF08317 Spc7: Spc7 kinetochor 69.0 20 0.00044 27.4 6.1 26 21-46 232-257 (325)
72 cd04776 HTH_GnyR Helix-Turn-He 68.9 30 0.00065 22.7 6.2 35 12-46 80-114 (118)
73 KOG3335|consensus 68.8 27 0.00058 25.5 6.3 35 15-49 109-143 (181)
74 PF15290 Syntaphilin: Golgi-lo 68.7 20 0.00043 28.1 5.9 34 14-47 70-103 (305)
75 PRK10947 global DNA-binding tr 68.3 23 0.00051 24.4 5.7 43 7-49 23-65 (135)
76 TIGR02894 DNA_bind_RsfA transc 68.0 26 0.00056 25.1 6.0 34 10-43 102-135 (161)
77 PRK04406 hypothetical protein; 67.8 26 0.00057 21.7 5.8 24 18-41 10-33 (75)
78 PF08336 P4Ha_N: Prolyl 4-Hydr 67.8 30 0.00065 22.9 6.1 45 6-50 2-46 (134)
79 PRK14011 prefoldin subunit alp 67.5 13 0.00028 25.9 4.3 41 9-49 85-125 (144)
80 cd00632 Prefoldin_beta Prefold 67.3 24 0.00052 22.5 5.4 38 11-48 62-99 (105)
81 PF04977 DivIC: Septum formati 67.2 23 0.0005 20.8 5.9 34 7-40 19-52 (80)
82 PRK14127 cell division protein 66.7 27 0.00059 23.3 5.6 27 21-47 39-65 (109)
83 PF11471 Sugarporin_N: Maltopo 66.6 17 0.00037 21.8 4.2 30 17-46 30-59 (60)
84 PRK03992 proteasome-activating 66.6 24 0.00052 27.5 6.2 40 8-47 11-50 (389)
85 PF07412 Geminin: Geminin; In 66.2 20 0.00044 26.4 5.3 30 20-49 126-155 (200)
86 KOG3990|consensus 66.2 11 0.00023 29.3 4.0 31 13-43 226-256 (305)
87 PF12718 Tropomyosin_1: Tropom 65.7 26 0.00056 24.0 5.6 42 8-49 24-65 (143)
88 PF08826 DMPK_coil: DMPK coile 65.3 28 0.0006 21.0 5.0 26 14-39 34-59 (61)
89 PF04102 SlyX: SlyX; InterPro 64.9 28 0.00061 20.9 6.0 22 21-42 27-48 (69)
90 PF10205 KLRAQ: Predicted coil 64.4 39 0.00084 22.5 6.0 37 8-44 29-72 (102)
91 PF11594 Med28: Mediator compl 64.2 14 0.00031 24.8 3.8 34 16-49 39-72 (106)
92 PF09006 Surfac_D-trimer: Lung 64.0 14 0.0003 21.4 3.3 33 21-53 1-33 (46)
93 PF00170 bZIP_1: bZIP transcri 63.9 27 0.00058 20.3 6.0 36 12-47 26-61 (64)
94 PRK02119 hypothetical protein; 63.5 32 0.0007 21.1 6.2 21 19-39 9-29 (73)
95 PF08317 Spc7: Spc7 kinetochor 63.4 31 0.00067 26.4 6.1 39 8-46 233-271 (325)
96 PRK09039 hypothetical protein; 63.4 22 0.00049 27.6 5.4 8 42-49 192-199 (343)
97 TIGR02338 gimC_beta prefoldin, 63.0 27 0.00059 22.5 5.1 27 18-44 73-99 (110)
98 PRK00888 ftsB cell division pr 62.6 28 0.0006 22.7 5.0 41 6-46 28-68 (105)
99 PF08941 USP8_interact: USP8 i 61.8 2.6 5.7E-05 30.7 0.0 49 9-57 1-49 (179)
100 PF05010 TACC: Transforming ac 61.5 27 0.00058 25.7 5.3 39 9-47 165-203 (207)
101 cd00089 HR1 Protein kinase C-r 61.3 21 0.00045 21.3 4.0 29 20-48 43-71 (72)
102 KOG4603|consensus 61.2 35 0.00075 25.2 5.7 34 10-43 98-133 (201)
103 COG1382 GimC Prefoldin, chaper 61.1 31 0.00066 23.5 5.1 38 13-50 71-108 (119)
104 KOG0995|consensus 60.9 24 0.00052 30.0 5.4 35 15-49 290-324 (581)
105 smart00787 Spc7 Spc7 kinetocho 60.5 34 0.00074 26.4 5.9 32 11-42 231-262 (312)
106 PF10779 XhlA: Haemolysin XhlA 60.4 35 0.00076 20.5 6.0 33 16-48 17-49 (71)
107 PF14131 DUF4298: Domain of un 60.1 18 0.00039 23.0 3.7 23 8-30 3-25 (90)
108 PF04394 DUF536: Protein of un 60.0 30 0.00066 19.7 4.9 23 25-47 2-24 (45)
109 PF09457 RBD-FIP: FIP domain ; 59.9 30 0.00064 20.0 4.2 28 20-47 8-35 (48)
110 PF14931 IFT20: Intraflagellar 59.8 29 0.00062 23.4 4.8 33 15-47 76-108 (120)
111 PF10174 Cast: RIM-binding pro 59.4 17 0.00037 31.6 4.5 34 9-42 228-261 (775)
112 KOG1655|consensus 59.4 28 0.0006 26.1 5.0 39 9-47 16-54 (218)
113 PF10186 Atg14: UV radiation r 59.3 36 0.00078 24.5 5.6 32 16-47 67-98 (302)
114 PF06120 Phage_HK97_TLTM: Tail 58.8 35 0.00077 26.5 5.7 40 11-50 73-112 (301)
115 TIGR02338 gimC_beta prefoldin, 58.7 47 0.001 21.4 6.2 30 15-44 77-106 (110)
116 PRK11239 hypothetical protein; 58.3 16 0.00034 27.4 3.6 30 19-48 183-212 (215)
117 PF11544 Spc42p: Spindle pole 58.1 46 0.00099 21.1 5.3 31 8-45 8-38 (76)
118 PHA01750 hypothetical protein 57.5 40 0.00086 21.2 4.8 26 19-44 49-74 (75)
119 PRK09343 prefoldin subunit bet 57.3 54 0.0012 21.7 6.1 33 15-47 81-113 (121)
120 PRK10328 DNA binding protein, 57.1 50 0.0011 22.7 5.7 42 8-49 24-65 (134)
121 COG2900 SlyX Uncharacterized p 57.0 47 0.001 20.9 5.5 34 16-49 5-45 (72)
122 PF11932 DUF3450: Protein of u 57.0 49 0.0011 24.2 6.0 31 16-46 67-97 (251)
123 PRK10803 tol-pal system protei 56.8 41 0.00088 25.1 5.7 36 11-46 67-102 (263)
124 PF14772 NYD-SP28: Sperm tail 56.6 30 0.00066 22.0 4.4 18 25-42 68-85 (104)
125 PF05008 V-SNARE: Vesicle tran 56.4 41 0.00088 20.0 4.9 27 16-42 22-48 (79)
126 PF13863 DUF4200: Domain of un 56.1 52 0.0011 21.1 6.0 32 15-46 77-108 (126)
127 PF07988 LMSTEN: LMSTEN motif; 55.9 13 0.00028 21.6 2.2 22 16-37 25-46 (48)
128 cd00584 Prefoldin_alpha Prefol 55.6 55 0.0012 21.3 5.6 42 8-49 2-43 (129)
129 COG5509 Uncharacterized small 54.9 27 0.00059 21.5 3.6 24 21-44 27-50 (65)
130 PF05377 FlaC_arch: Flagella a 54.2 27 0.00059 20.8 3.5 36 8-43 3-38 (55)
131 PF09302 XLF: XLF (XRCC4-like 54.0 40 0.00087 23.0 4.9 28 15-42 142-169 (171)
132 PF04156 IncA: IncA protein; 53.9 39 0.00085 23.3 4.9 35 13-47 82-116 (191)
133 KOG3335|consensus 53.7 33 0.00072 25.1 4.5 37 16-52 103-139 (181)
134 PF11461 RILP: Rab interacting 53.4 37 0.0008 20.5 4.1 31 8-42 3-33 (60)
135 PRK14127 cell division protein 53.2 66 0.0014 21.5 6.2 37 13-49 38-74 (109)
136 PF08776 VASP_tetra: VASP tetr 53.2 40 0.00086 19.0 4.8 30 15-44 7-37 (40)
137 PRK13729 conjugal transfer pil 52.9 38 0.00082 28.1 5.3 26 19-44 97-122 (475)
138 PF12999 PRKCSH-like: Glucosid 52.6 73 0.0016 23.0 6.2 36 11-46 138-173 (176)
139 TIGR03689 pup_AAA proteasome A 52.3 53 0.0012 27.2 6.1 41 7-47 3-43 (512)
140 PF02185 HR1: Hr1 repeat; Int 52.1 26 0.00056 20.8 3.3 33 20-52 34-66 (70)
141 TIGR02209 ftsL_broad cell divi 52.0 50 0.0011 19.8 4.8 33 8-40 27-59 (85)
142 PF03962 Mnd1: Mnd1 family; I 51.9 52 0.0011 23.5 5.3 31 16-46 66-96 (188)
143 PF04111 APG6: Autophagy prote 51.8 70 0.0015 24.6 6.3 23 21-43 66-88 (314)
144 PF04201 TPD52: Tumour protein 51.6 59 0.0013 23.3 5.5 35 8-42 32-66 (162)
145 COG3879 Uncharacterized protei 51.3 67 0.0015 24.5 6.0 27 20-46 58-84 (247)
146 PF12848 ABC_tran_2: ABC trans 50.9 52 0.0011 19.6 5.5 37 11-47 16-52 (85)
147 PF01920 Prefoldin_2: Prefoldi 50.4 58 0.0013 20.0 5.9 35 14-48 64-98 (106)
148 PF11853 DUF3373: Protein of u 50.0 15 0.00033 30.4 2.6 25 20-44 32-56 (489)
149 COG1730 GIM5 Predicted prefold 49.8 54 0.0012 22.9 5.0 36 9-44 91-126 (145)
150 PF08614 ATG16: Autophagy prot 49.6 38 0.00083 23.9 4.3 29 14-42 111-139 (194)
151 PF14257 DUF4349: Domain of un 49.6 31 0.00067 25.2 4.0 35 19-53 162-196 (262)
152 PF13118 DUF3972: Protein of u 49.3 63 0.0014 22.3 5.2 18 12-29 78-95 (126)
153 COG3883 Uncharacterized protei 49.1 55 0.0012 25.1 5.4 27 16-42 70-96 (265)
154 COG1422 Predicted membrane pro 48.8 86 0.0019 23.2 6.1 40 8-47 75-122 (201)
155 PF07028 DUF1319: Protein of u 48.5 85 0.0018 21.7 5.7 27 15-41 56-82 (126)
156 PRK14161 heat shock protein Gr 48.1 60 0.0013 23.2 5.1 30 17-46 24-53 (178)
157 PF11855 DUF3375: Protein of u 47.7 40 0.00086 27.3 4.6 24 16-39 141-164 (478)
158 PRK13169 DNA replication intia 47.6 83 0.0018 21.0 6.0 33 15-47 25-57 (110)
159 PF13600 DUF4140: N-terminal d 47.2 70 0.0015 20.0 5.0 31 13-43 71-101 (104)
160 PF12325 TMF_TATA_bd: TATA ele 46.6 89 0.0019 21.0 6.0 33 7-39 18-50 (120)
161 PTZ00454 26S protease regulato 46.4 84 0.0018 24.9 6.2 49 5-53 15-63 (398)
162 PF10205 KLRAQ: Predicted coil 46.3 87 0.0019 20.8 5.8 39 8-46 15-53 (102)
163 PF07106 TBPIP: Tat binding pr 46.1 95 0.0021 21.2 6.0 24 24-47 114-137 (169)
164 PF04728 LPP: Lipoprotein leuc 46.0 64 0.0014 19.3 4.2 28 20-47 4-31 (56)
165 PF05873 Mt_ATP-synt_D: ATP sy 45.8 42 0.00092 23.5 4.0 38 16-53 93-130 (161)
166 PF08340 DUF1732: Domain of un 45.6 16 0.00035 23.7 1.7 23 30-52 12-34 (87)
167 KOG0728|consensus 45.3 84 0.0018 25.0 5.9 40 8-47 27-66 (404)
168 PF07716 bZIP_2: Basic region 45.2 57 0.0012 18.4 5.1 30 12-41 25-54 (54)
169 PTZ00420 coronin; Provisional 45.1 33 0.00072 28.6 3.9 21 21-41 429-451 (568)
170 PRK05260 condesin subunit F; P 45.1 63 0.0014 26.6 5.3 44 1-47 212-265 (440)
171 COG1579 Zn-ribbon protein, pos 45.1 93 0.002 23.5 6.0 40 8-47 92-131 (239)
172 PF14772 NYD-SP28: Sperm tail 44.8 80 0.0017 20.0 5.3 28 9-36 66-93 (104)
173 KOG4005|consensus 44.6 51 0.0011 25.5 4.5 33 16-48 87-119 (292)
174 PF07200 Mod_r: Modifier of ru 44.5 87 0.0019 20.9 5.3 11 4-14 26-36 (150)
175 PF10186 Atg14: UV radiation r 44.0 91 0.002 22.4 5.7 35 14-48 72-106 (302)
176 PF09726 Macoilin: Transmembra 43.4 71 0.0015 27.5 5.6 33 15-47 548-580 (697)
177 PF12010 DUF3502: Domain of un 43.2 51 0.0011 22.0 4.0 31 17-47 99-131 (134)
178 cd00890 Prefoldin Prefoldin is 43.0 87 0.0019 19.9 5.6 40 8-47 2-41 (129)
179 PRK12704 phosphodiesterase; Pr 42.7 92 0.002 25.7 6.1 22 22-43 106-127 (520)
180 TIGR00293 prefoldin, archaeal 42.7 92 0.002 20.1 5.7 41 8-48 2-42 (126)
181 PF05791 Bacillus_HBL: Bacillu 42.7 84 0.0018 22.2 5.2 35 15-49 145-179 (184)
182 PF06156 DUF972: Protein of un 42.6 98 0.0021 20.4 5.5 35 15-49 18-52 (107)
183 PRK03992 proteasome-activating 42.5 96 0.0021 24.2 5.9 44 8-51 4-47 (389)
184 TIGR02231 conserved hypothetic 42.3 1E+02 0.0023 24.8 6.2 40 7-46 126-172 (525)
185 cd04769 HTH_MerR2 Helix-Turn-H 42.2 93 0.002 20.0 5.8 28 20-47 87-114 (116)
186 PRK01203 prefoldin subunit alp 42.1 1.1E+02 0.0024 21.0 6.0 41 7-47 2-42 (130)
187 PF07047 OPA3: Optic atrophy 3 41.7 1.1E+02 0.0023 20.6 5.6 28 19-46 105-132 (134)
188 TIGR01837 PHA_granule_1 poly(h 41.6 64 0.0014 21.4 4.2 21 19-39 96-116 (118)
189 PF15233 SYCE1: Synaptonemal c 41.5 1.2E+02 0.0026 21.2 5.9 27 21-47 36-62 (134)
190 PF06156 DUF972: Protein of un 41.3 1E+02 0.0022 20.3 6.0 40 8-47 18-57 (107)
191 PRK14160 heat shock protein Gr 41.2 1.1E+02 0.0024 22.5 5.8 37 10-46 59-95 (211)
192 PF06818 Fez1: Fez1; InterPro 41.0 62 0.0013 23.9 4.4 32 9-40 56-87 (202)
193 smart00787 Spc7 Spc7 kinetocho 40.9 1.2E+02 0.0025 23.5 6.1 30 17-46 223-252 (312)
194 PRK00106 hypothetical protein; 40.7 1E+02 0.0022 25.9 6.0 15 28-42 134-148 (535)
195 PF05531 NPV_P10: Nucleopolyhe 40.7 63 0.0014 20.4 3.8 33 20-52 36-68 (75)
196 KOG0570|consensus 40.6 60 0.0013 24.4 4.2 35 15-49 129-163 (223)
197 COG1382 GimC Prefoldin, chaper 40.5 1.2E+02 0.0025 20.7 5.7 27 16-42 81-107 (119)
198 PF05103 DivIVA: DivIVA protei 40.4 39 0.00084 21.7 3.0 33 15-47 28-60 (131)
199 TIGR03319 YmdA_YtgF conserved 40.1 1.1E+02 0.0024 25.2 6.1 23 22-44 100-122 (514)
200 PF12958 DUF3847: Protein of u 39.9 1E+02 0.0022 19.8 4.9 28 18-45 7-34 (86)
201 PF12795 MscS_porin: Mechanose 39.8 1.3E+02 0.0028 21.7 6.0 34 15-48 34-67 (240)
202 cd04787 HTH_HMRTR_unk Helix-Tu 39.2 1.1E+02 0.0024 20.2 5.1 24 22-45 82-105 (133)
203 KOG4196|consensus 38.7 72 0.0016 22.3 4.2 32 19-50 81-112 (135)
204 KOG3088|consensus 38.4 94 0.002 24.5 5.2 35 13-47 61-95 (313)
205 PF06305 DUF1049: Protein of u 38.3 55 0.0012 18.8 3.2 19 20-38 49-67 (68)
206 KOG4643|consensus 38.3 89 0.0019 28.7 5.6 37 10-46 189-225 (1195)
207 KOG1029|consensus 38.2 94 0.002 28.0 5.6 39 7-45 530-568 (1118)
208 PRK14140 heat shock protein Gr 38.2 1.1E+02 0.0023 22.3 5.2 29 18-46 43-71 (191)
209 PRK09343 prefoldin subunit bet 37.9 1.1E+02 0.0023 20.3 4.8 36 14-49 73-108 (121)
210 PF10458 Val_tRNA-synt_C: Valy 37.8 87 0.0019 18.4 4.1 26 18-43 3-28 (66)
211 PF13865 FoP_duplication: C-te 37.7 70 0.0015 19.6 3.7 27 21-47 42-69 (74)
212 PRK10803 tol-pal system protei 37.7 1.2E+02 0.0027 22.5 5.7 25 20-44 62-86 (263)
213 PRK12704 phosphodiesterase; Pr 37.6 1.3E+02 0.0028 24.9 6.2 28 16-43 107-134 (520)
214 PF14584 DUF4446: Protein of u 37.5 1.2E+02 0.0026 21.1 5.2 39 8-46 42-80 (151)
215 PF01166 TSC22: TSC-22/dip/bun 37.2 82 0.0018 19.1 3.8 33 21-53 16-48 (59)
216 cd01109 HTH_YyaN Helix-Turn-He 37.2 1.1E+02 0.0024 19.5 5.5 28 19-46 79-106 (113)
217 PF04508 Pox_A_type_inc: Viral 37.1 58 0.0013 16.2 2.7 16 30-45 5-20 (23)
218 COG3879 Uncharacterized protei 37.0 1.1E+02 0.0023 23.4 5.2 42 8-49 60-105 (247)
219 PF06698 DUF1192: Protein of u 36.9 95 0.0021 18.6 4.9 29 16-44 25-53 (59)
220 PF12443 AKNA: AT-hook-contain 36.7 61 0.0013 21.7 3.5 29 21-49 47-75 (106)
221 KOG4603|consensus 36.5 1.1E+02 0.0025 22.5 5.1 27 16-42 83-109 (201)
222 KOG0963|consensus 36.3 1E+02 0.0022 26.6 5.4 30 16-45 314-343 (629)
223 PF04111 APG6: Autophagy prote 36.1 1.7E+02 0.0036 22.5 6.3 35 19-53 106-140 (314)
224 KOG4643|consensus 36.0 1.2E+02 0.0025 28.0 5.9 39 8-46 173-211 (1195)
225 PF11083 Streptin-Immun: Lanti 35.9 1.1E+02 0.0024 20.3 4.6 35 16-50 56-90 (99)
226 PRK05771 V-type ATP synthase s 35.9 1E+02 0.0023 25.6 5.4 31 11-41 214-244 (646)
227 PF03882 KicB: KicB killing fa 35.8 1E+02 0.0023 25.3 5.3 43 2-47 213-265 (440)
228 TIGR03319 YmdA_YtgF conserved 35.5 1.4E+02 0.003 24.6 6.1 28 16-43 101-128 (514)
229 PRK14159 heat shock protein Gr 35.3 86 0.0019 22.4 4.3 31 17-47 28-58 (176)
230 PF08700 Vps51: Vps51/Vps67; 35.3 1E+02 0.0022 18.4 4.1 26 21-46 60-85 (87)
231 COG5415 Predicted integral mem 35.2 72 0.0016 24.3 4.0 31 19-49 15-45 (251)
232 KOG0804|consensus 35.2 1.2E+02 0.0026 25.3 5.5 31 16-46 418-448 (493)
233 PF10046 BLOC1_2: Biogenesis o 35.1 1.2E+02 0.0026 19.3 5.4 20 20-39 74-93 (99)
234 PF11594 Med28: Mediator compl 35.0 1.4E+02 0.003 20.0 5.2 34 8-41 45-78 (106)
235 PF08702 Fib_alpha: Fibrinogen 34.9 1.5E+02 0.0033 20.4 5.7 29 16-44 101-129 (146)
236 PRK14011 prefoldin subunit alp 34.5 1.6E+02 0.0034 20.4 6.0 35 11-45 94-128 (144)
237 PF15483 DUF4641: Domain of un 34.5 50 0.0011 27.2 3.3 24 23-46 422-445 (445)
238 KOG4674|consensus 34.4 1.2E+02 0.0026 29.3 6.0 39 8-46 568-606 (1822)
239 PRK14147 heat shock protein Gr 34.4 94 0.002 22.0 4.4 27 20-46 26-52 (172)
240 PF15619 Lebercilin: Ciliary p 34.4 1.3E+02 0.0028 21.7 5.1 37 11-47 4-40 (194)
241 PRK10265 chaperone-modulator p 34.3 97 0.0021 19.8 4.1 28 19-46 71-98 (101)
242 PF07061 Swi5: Swi5; InterPro 34.0 93 0.002 19.6 3.9 24 19-42 7-30 (83)
243 PF15397 DUF4618: Domain of un 34.0 1.4E+02 0.0031 22.8 5.5 37 10-46 72-108 (258)
244 PF12718 Tropomyosin_1: Tropom 33.8 1.6E+02 0.0034 20.1 6.0 34 16-49 18-58 (143)
245 KOG1853|consensus 33.7 1.5E+02 0.0032 23.3 5.6 45 5-49 133-180 (333)
246 PF09036 Bcr-Abl_Oligo: Bcr-Ab 33.3 1.3E+02 0.0028 19.1 6.2 41 6-46 27-67 (79)
247 PF05103 DivIVA: DivIVA protei 33.2 36 0.00078 21.9 1.9 35 15-49 35-69 (131)
248 TIGR01242 26Sp45 26S proteasom 33.0 82 0.0018 24.0 4.1 32 19-50 6-37 (364)
249 PF11050 Viral_env_E26: Virus 33.0 76 0.0016 23.5 3.7 34 15-48 65-98 (206)
250 PF12548 DUF3740: Sulfatase pr 33.0 42 0.00091 23.4 2.3 19 30-48 110-128 (145)
251 PF14662 CCDC155: Coiled-coil 32.8 1.1E+02 0.0024 22.6 4.5 36 15-50 154-189 (193)
252 PRK10947 global DNA-binding tr 32.8 1.7E+02 0.0036 20.1 6.0 38 8-45 31-68 (135)
253 TIGR02231 conserved hypothetic 32.7 1.4E+02 0.003 24.1 5.5 33 8-40 141-173 (525)
254 PRK13169 DNA replication intia 32.6 1.5E+02 0.0033 19.7 5.6 44 8-51 11-54 (110)
255 COG2916 Hns DNA-binding protei 32.6 1.7E+02 0.0036 20.2 5.5 43 8-50 18-60 (128)
256 COG3937 Uncharacterized conser 32.4 1.3E+02 0.0028 20.3 4.5 20 22-41 86-105 (108)
257 KOG0995|consensus 32.4 1.7E+02 0.0037 25.0 6.1 21 24-44 292-312 (581)
258 PF07097 DUF1359: Protein of u 32.4 1.4E+02 0.0031 19.7 4.6 36 18-53 8-50 (102)
259 KOG1760|consensus 32.2 1.8E+02 0.0038 20.3 5.7 35 8-42 80-118 (131)
260 COG1579 Zn-ribbon protein, pos 32.1 2.1E+02 0.0045 21.6 6.1 33 16-48 49-81 (239)
261 PF15458 NTR2: Nineteen comple 32.1 1.6E+02 0.0035 22.0 5.5 27 16-42 226-252 (254)
262 PRK14151 heat shock protein Gr 32.0 1.1E+02 0.0023 21.8 4.4 25 21-45 29-53 (176)
263 PF03357 Snf7: Snf7; InterPro 31.9 1.3E+02 0.0029 19.8 4.7 23 21-43 10-32 (171)
264 PF12001 DUF3496: Domain of un 31.7 1.1E+02 0.0024 20.5 4.1 8 21-28 9-16 (111)
265 PF15397 DUF4618: Domain of un 31.7 1.6E+02 0.0035 22.5 5.5 33 11-43 192-224 (258)
266 PRK05771 V-type ATP synthase s 31.4 1.7E+02 0.0037 24.3 6.0 32 15-46 96-127 (646)
267 PHA03395 p10 fibrous body prot 31.1 1.5E+02 0.0033 19.2 4.6 37 21-57 37-73 (87)
268 PF12841 YvrJ: YvrJ protein fa 30.7 97 0.0021 17.0 3.1 19 22-40 18-36 (38)
269 PRK14143 heat shock protein Gr 30.6 1.5E+02 0.0032 22.2 5.1 29 18-46 73-101 (238)
270 PF14282 FlxA: FlxA-like prote 30.5 1.5E+02 0.0032 19.2 4.5 30 16-45 48-77 (106)
271 PF09304 Cortex-I_coil: Cortex 30.3 1.7E+02 0.0037 19.6 6.2 36 10-45 42-77 (107)
272 PF12998 ING: Inhibitor of gro 30.3 1.3E+02 0.0029 18.4 5.3 30 16-45 76-105 (105)
273 PRK14139 heat shock protein Gr 30.2 1.5E+02 0.0033 21.3 5.0 27 20-46 40-66 (185)
274 PRK14141 heat shock protein Gr 30.2 1.1E+02 0.0025 22.4 4.3 22 22-43 41-62 (209)
275 PHA03161 hypothetical protein; 30.2 2E+02 0.0044 20.4 5.8 21 8-28 57-77 (150)
276 PRK00106 hypothetical protein; 30.0 2E+02 0.0043 24.1 6.1 30 17-46 116-145 (535)
277 PF06785 UPF0242: Uncharacteri 30.0 1.2E+02 0.0026 24.6 4.6 28 16-43 145-172 (401)
278 PRK13922 rod shape-determining 29.7 1.9E+02 0.0042 21.1 5.5 33 17-49 74-109 (276)
279 PF12017 Tnp_P_element: Transp 29.6 1.9E+02 0.0041 21.6 5.5 29 15-43 14-42 (236)
280 PF13015 PRKCSH_1: Glucosidase 29.5 91 0.002 21.8 3.6 24 20-43 4-27 (154)
281 PF10234 Cluap1: Clusterin-ass 29.5 2.3E+02 0.005 21.7 6.0 26 24-49 195-220 (267)
282 PF10146 zf-C4H2: Zinc finger- 29.2 2.4E+02 0.0052 20.9 6.2 24 25-48 80-103 (230)
283 PF14182 YgaB: YgaB-like prote 29.2 1.5E+02 0.0033 18.9 4.2 30 24-53 38-67 (79)
284 PF03962 Mnd1: Mnd1 family; I 29.1 2.2E+02 0.0047 20.3 6.2 23 25-47 109-131 (188)
285 PF10655 DUF2482: Hypothetical 28.9 93 0.002 20.7 3.3 28 17-44 6-33 (100)
286 PF03993 DUF349: Domain of Unk 28.9 1.2E+02 0.0027 17.5 4.5 23 10-32 29-51 (77)
287 PF04012 PspA_IM30: PspA/IM30 28.8 2.1E+02 0.0046 20.1 6.0 33 13-45 106-138 (221)
288 PF11598 COMP: Cartilage oligo 28.8 1.2E+02 0.0026 17.3 5.8 35 10-44 6-40 (45)
289 cd04775 HTH_Cfa-like Helix-Tur 28.6 1.5E+02 0.0031 18.7 4.2 28 20-47 72-99 (102)
290 PF01763 Herpes_UL6: Herpesvir 28.5 1.8E+02 0.004 24.6 5.7 35 14-48 372-406 (557)
291 PRK11415 hypothetical protein; 28.5 1.4E+02 0.0031 18.1 4.2 35 5-39 3-37 (74)
292 PRK10698 phage shock protein P 28.4 1.3E+02 0.0028 22.0 4.3 33 17-49 97-129 (222)
293 PF07028 DUF1319: Protein of u 28.3 2E+02 0.0044 19.8 5.5 42 11-52 45-86 (126)
294 PF14362 DUF4407: Domain of un 28.1 87 0.0019 23.3 3.5 33 17-49 133-165 (301)
295 PRK14149 heat shock protein Gr 28.1 1.3E+02 0.0029 21.8 4.3 32 16-47 40-71 (191)
296 PRK13729 conjugal transfer pil 28.1 1.9E+02 0.0041 24.1 5.7 24 26-49 97-120 (475)
297 cd04790 HTH_Cfa-like_unk Helix 28.0 1.7E+02 0.0036 20.4 4.7 42 8-49 62-104 (172)
298 PF07889 DUF1664: Protein of u 28.0 2E+02 0.0043 19.6 5.9 33 15-47 64-96 (126)
299 PRK09413 IS2 repressor TnpA; R 27.8 1.8E+02 0.0038 18.9 4.9 23 20-42 79-101 (121)
300 PF15079 DUF4546: Domain of un 27.7 1.5E+02 0.0032 21.9 4.5 25 20-44 55-79 (205)
301 TIGR03185 DNA_S_dndD DNA sulfu 27.7 2.3E+02 0.0049 23.7 6.1 18 19-36 435-452 (650)
302 TIGR01834 PHA_synth_III_E poly 27.7 1.4E+02 0.003 23.6 4.6 28 19-46 289-316 (320)
303 cd03777 MATH_TRAF3 Tumor Necro 27.5 1.2E+02 0.0026 21.6 4.0 24 9-32 10-33 (186)
304 cd08915 V_Alix_like Protein-in 27.5 2E+02 0.0043 21.8 5.4 40 10-49 245-284 (342)
305 PF08702 Fib_alpha: Fibrinogen 27.5 1.5E+02 0.0033 20.4 4.4 26 22-47 93-118 (146)
306 TIGR02977 phageshock_pspA phag 27.4 2.4E+02 0.0051 20.3 6.1 22 24-45 111-132 (219)
307 TIGR00606 rad50 rad50. This fa 27.3 2E+02 0.0043 26.2 6.1 40 8-47 301-340 (1311)
308 PF13935 Ead_Ea22: Ead/Ea22-li 27.2 2E+02 0.0043 19.4 5.0 41 9-49 71-113 (139)
309 PRK14158 heat shock protein Gr 27.1 2.1E+02 0.0046 20.8 5.3 27 20-46 48-74 (194)
310 PRK11239 hypothetical protein; 27.0 1.3E+02 0.0027 22.6 4.1 28 16-43 187-214 (215)
311 PRK01203 prefoldin subunit alp 27.0 1E+02 0.0022 21.2 3.4 28 20-47 8-35 (130)
312 PF04420 CHD5: CHD5-like prote 27.0 75 0.0016 22.0 2.8 25 23-47 70-94 (161)
313 PF11068 YlqD: YlqD protein; 26.9 1.8E+02 0.0038 19.9 4.6 34 16-49 17-50 (131)
314 COG2919 Septum formation initi 26.8 1.9E+02 0.0041 19.0 5.0 31 18-48 56-86 (117)
315 PF06005 DUF904: Protein of un 26.7 1.6E+02 0.0035 18.1 6.3 31 16-46 22-52 (72)
316 PF10174 Cast: RIM-binding pro 26.6 2.1E+02 0.0045 25.2 5.8 36 8-43 131-166 (775)
317 TIGR03185 DNA_S_dndD DNA sulfu 26.6 2.4E+02 0.0052 23.5 6.1 25 21-45 225-249 (650)
318 PTZ00361 26 proteosome regulat 26.5 2.5E+02 0.0053 22.8 6.0 20 29-48 84-103 (438)
319 KOG2264|consensus 26.4 1.8E+02 0.004 25.5 5.4 26 18-43 113-138 (907)
320 COG0732 HsdS Restriction endon 26.4 2.5E+02 0.0055 20.3 5.8 33 14-46 152-184 (391)
321 PRK14155 heat shock protein Gr 26.3 1.5E+02 0.0032 21.8 4.4 15 10-24 18-32 (208)
322 PRK02224 chromosome segregatio 26.3 2.3E+02 0.005 24.1 6.0 27 21-47 274-300 (880)
323 PF02403 Seryl_tRNA_N: Seryl-t 26.2 1.7E+02 0.0037 18.3 5.2 31 20-50 75-105 (108)
324 PF00038 Filament: Intermediat 26.2 2.7E+02 0.0058 20.5 6.2 10 29-38 265-274 (312)
325 PF00466 Ribosomal_L10: Riboso 26.1 52 0.0011 20.3 1.7 24 29-52 4-27 (100)
326 PF05667 DUF812: Protein of un 26.1 2.1E+02 0.0046 24.2 5.7 37 11-47 446-482 (594)
327 PF04576 Zein-binding: Zein-bi 26.1 1.2E+02 0.0027 19.8 3.5 25 19-43 70-94 (94)
328 PTZ00421 coronin; Provisional 26.1 1.5E+02 0.0032 24.2 4.7 28 9-36 457-484 (493)
329 TIGR03755 conj_TIGR03755 integ 25.9 1.2E+02 0.0025 24.9 4.0 33 17-49 348-380 (418)
330 PF10146 zf-C4H2: Zinc finger- 25.9 2.8E+02 0.0061 20.6 6.0 25 17-41 79-103 (230)
331 KOG3647|consensus 25.8 2.5E+02 0.0055 22.2 5.7 33 19-51 133-165 (338)
332 PF08172 CASP_C: CASP C termin 25.7 1.5E+02 0.0033 22.2 4.4 33 16-48 3-35 (248)
333 PF06825 HSBP1: Heat shock fac 25.7 1.5E+02 0.0033 17.4 3.8 25 16-40 25-49 (54)
334 COG4839 FtsL Protein required 25.7 1.7E+02 0.0037 20.1 4.2 28 17-44 65-92 (120)
335 TIGR01834 PHA_synth_III_E poly 25.7 1.4E+02 0.003 23.5 4.3 19 27-45 290-308 (320)
336 PF13334 DUF4094: Domain of un 25.6 1E+02 0.0022 19.9 3.1 22 8-29 69-90 (95)
337 PF07334 IFP_35_N: Interferon- 25.5 1.5E+02 0.0032 18.8 3.6 19 10-28 5-23 (76)
338 PF10737 GerPC: Spore germinat 25.5 68 0.0015 23.2 2.4 21 21-41 1-21 (176)
339 PF13758 Prefoldin_3: Prefoldi 25.4 2.1E+02 0.0045 18.9 5.1 44 2-45 44-94 (99)
340 KOG4674|consensus 25.3 1.5E+02 0.0031 28.8 4.9 31 16-46 1311-1341(1822)
341 PF00261 Tropomyosin: Tropomyo 25.3 2.7E+02 0.0058 20.2 6.2 15 29-43 200-214 (237)
342 PF14817 HAUS5: HAUS augmin-li 25.3 2.7E+02 0.0058 23.9 6.2 32 8-39 89-120 (632)
343 PF06818 Fez1: Fez1; InterPro 25.1 2.3E+02 0.0049 21.0 5.1 37 9-45 70-106 (202)
344 PRK03918 chromosome segregatio 25.1 2.7E+02 0.0057 23.6 6.1 26 21-46 254-279 (880)
345 PF11336 DUF3138: Protein of u 25.0 1.1E+02 0.0024 25.6 3.7 28 17-44 23-50 (514)
346 cd09238 V_Alix_like_1 Protein- 24.8 2.4E+02 0.0052 21.7 5.4 40 10-49 242-281 (339)
347 PF10211 Ax_dynein_light: Axon 24.8 2.1E+02 0.0046 20.3 4.9 30 17-46 125-154 (189)
348 cd01107 HTH_BmrR Helix-Turn-He 24.7 1.9E+02 0.0042 18.3 4.5 39 8-46 62-102 (108)
349 PRK14148 heat shock protein Gr 24.6 2.8E+02 0.006 20.2 5.5 27 20-46 48-74 (195)
350 PRK14157 heat shock protein Gr 24.5 1.6E+02 0.0035 22.0 4.3 27 20-46 85-111 (227)
351 cd05796 Ribosomal_P0_like Ribo 24.5 56 0.0012 22.6 1.8 22 30-51 2-23 (163)
352 PF06120 Phage_HK97_TLTM: Tail 24.4 2.6E+02 0.0057 21.8 5.6 35 16-50 71-105 (301)
353 PF04568 IATP: Mitochondrial A 24.4 2.1E+02 0.0046 18.7 4.9 31 17-47 67-97 (100)
354 TIGR02976 phageshock_pspB phag 24.4 1.3E+02 0.0029 18.7 3.3 13 16-28 53-65 (75)
355 PF09421 FRQ: Frequency clock 24.4 68 0.0015 29.0 2.6 31 20-50 129-159 (989)
356 cd01111 HTH_MerD Helix-Turn-He 24.3 1.9E+02 0.0042 18.5 4.2 25 20-44 81-105 (107)
357 KOG2114|consensus 24.3 1.8E+02 0.0039 26.2 5.0 37 11-47 797-833 (933)
358 smart00434 TOP4c DNA Topoisome 24.2 2E+02 0.0043 23.3 5.1 25 18-42 414-438 (445)
359 PF09403 FadA: Adhesion protei 24.0 2.4E+02 0.0052 19.2 5.2 29 10-38 91-119 (126)
360 KOG2264|consensus 23.9 2.2E+02 0.0047 25.1 5.4 34 16-49 104-137 (907)
361 PF14931 IFT20: Intraflagellar 23.9 2.3E+02 0.0051 19.0 5.7 34 16-49 70-103 (120)
362 PF05308 Mito_fiss_reg: Mitoch 23.9 94 0.002 23.5 3.0 19 27-45 123-141 (253)
363 PTZ00421 coronin; Provisional 23.9 1.5E+02 0.0032 24.2 4.3 39 11-49 445-483 (493)
364 KOG4010|consensus 23.8 3.1E+02 0.0068 20.4 5.7 35 8-42 47-81 (208)
365 COG5185 HEC1 Protein involved 23.8 2E+02 0.0043 24.5 5.0 31 19-49 330-360 (622)
366 PF09789 DUF2353: Uncharacteri 23.8 2.5E+02 0.0054 22.1 5.4 42 9-50 76-117 (319)
367 PF04156 IncA: IncA protein; 23.6 2.5E+02 0.0054 19.2 5.8 29 19-47 137-165 (191)
368 cd04770 HTH_HMRTR Helix-Turn-H 23.4 2.1E+02 0.0046 18.3 6.1 25 21-45 81-105 (123)
369 cd04777 HTH_MerR-like_sg1 Heli 23.3 2E+02 0.0044 18.0 5.4 24 20-43 82-105 (107)
370 PF13863 DUF4200: Domain of un 23.3 2.1E+02 0.0045 18.2 6.0 35 8-42 10-44 (126)
371 COG4372 Uncharacterized protei 23.3 2.8E+02 0.0061 23.1 5.7 26 11-36 230-255 (499)
372 PF02388 FemAB: FemAB family; 23.1 3.6E+02 0.0079 21.2 6.3 34 18-51 272-305 (406)
373 cd00187 TOP4c DNA Topoisomeras 23.0 2.1E+02 0.0046 23.2 5.0 26 17-42 403-428 (445)
374 PF04201 TPD52: Tumour protein 23.0 1.7E+02 0.0036 21.0 4.0 23 20-42 30-52 (162)
375 PF05791 Bacillus_HBL: Bacillu 23.0 2E+02 0.0043 20.2 4.4 32 18-49 109-140 (184)
376 PF12795 MscS_porin: Mechanose 23.0 2.8E+02 0.0061 20.0 5.3 43 7-49 80-122 (240)
377 PF00521 DNA_topoisoIV: DNA gy 23.0 1.4E+02 0.0031 23.7 4.0 29 16-44 388-416 (426)
378 PRK13922 rod shape-determining 22.7 3.1E+02 0.0068 20.0 5.9 37 8-44 72-111 (276)
379 PRK04863 mukB cell division pr 22.7 2.6E+02 0.0057 26.4 6.0 21 24-44 381-401 (1486)
380 PF05667 DUF812: Protein of un 22.7 3.2E+02 0.0069 23.2 6.1 25 21-45 330-354 (594)
381 PF10481 CENP-F_N: Cenp-F N-te 22.4 3.9E+02 0.0085 21.0 6.2 41 13-53 89-136 (307)
382 PF12777 MT: Microtubule-bindi 22.2 1.1E+02 0.0023 23.6 3.1 38 7-44 223-260 (344)
383 PF02050 FliJ: Flagellar FliJ 22.2 1.9E+02 0.0041 17.3 5.6 30 12-41 52-81 (123)
384 PF08657 DASH_Spc34: DASH comp 22.2 1.1E+02 0.0024 23.2 3.0 15 14-28 241-255 (259)
385 KOG3478|consensus 22.2 2.7E+02 0.0058 19.1 5.5 33 18-50 82-114 (120)
386 TIGR02047 CadR-PbrR Cd(II)/Pb( 22.2 2.4E+02 0.0052 18.5 6.0 18 24-41 84-101 (127)
387 KOG0977|consensus 22.1 1.7E+02 0.0038 24.7 4.4 13 38-50 375-387 (546)
388 PF06667 PspB: Phage shock pro 21.9 1.5E+02 0.0033 18.4 3.2 13 16-28 53-65 (75)
389 PRK09458 pspB phage shock prot 21.9 1.7E+02 0.0036 18.5 3.4 13 16-28 53-65 (75)
390 PF12999 PRKCSH-like: Glucosid 21.8 3.1E+02 0.0067 19.8 5.2 17 21-37 155-171 (176)
391 PRK10328 DNA binding protein, 21.8 2.7E+02 0.006 19.0 6.1 38 8-45 31-68 (134)
392 COG3750 Uncharacterized protei 21.7 2.4E+02 0.0051 18.2 4.7 31 12-42 14-44 (85)
393 PF11050 Viral_env_E26: Virus 21.7 2.9E+02 0.0063 20.5 5.1 28 7-34 71-98 (206)
394 PRK14162 heat shock protein Gr 21.5 2.8E+02 0.0061 20.1 5.0 25 21-45 48-72 (194)
395 cd04768 HTH_BmrR-like Helix-Tu 21.5 2.2E+02 0.0047 17.7 4.3 32 8-39 61-93 (96)
396 PF04065 Not3: Not1 N-terminal 21.4 3.2E+02 0.007 20.4 5.4 30 10-39 120-149 (233)
397 KOG4571|consensus 21.3 3E+02 0.0064 21.6 5.3 21 21-41 264-284 (294)
398 PF03980 Nnf1: Nnf1 ; InterPr 21.2 2.3E+02 0.005 17.9 6.1 40 5-44 65-105 (109)
399 PRK14144 heat shock protein Gr 21.2 2.6E+02 0.0057 20.4 4.8 30 18-47 51-80 (199)
400 PF06632 XRCC4: DNA double-str 21.2 3.5E+02 0.0076 21.3 5.8 23 25-47 186-208 (342)
401 PF11315 Med30: Mediator compl 21.1 3.1E+02 0.0066 19.3 5.4 32 8-39 104-135 (150)
402 PRK14156 heat shock protein Gr 21.1 2.2E+02 0.0048 20.4 4.3 27 20-46 35-61 (177)
403 COG5124 Protein predicted to b 21.1 2.9E+02 0.0063 20.5 5.0 36 13-48 76-111 (209)
404 PF00015 MCPsignal: Methyl-acc 20.9 1.1E+02 0.0023 20.7 2.6 26 21-46 186-211 (213)
405 PF04350 PilO: Pilus assembly 20.9 1.1E+02 0.0025 19.6 2.6 27 27-53 24-50 (144)
406 PF09766 FimP: Fms-interacting 20.9 2.3E+02 0.005 22.1 4.7 11 8-18 94-104 (355)
407 cd04766 HTH_HspR Helix-Turn-He 20.8 2.1E+02 0.0045 17.5 3.7 19 24-42 70-88 (91)
408 PF11488 Lge1: Transcriptional 20.8 2.2E+02 0.0047 17.5 5.5 35 10-44 28-62 (80)
409 KOG0979|consensus 20.8 2E+02 0.0044 26.3 4.8 41 9-49 626-666 (1072)
410 PF07795 DUF1635: Protein of u 20.8 3.7E+02 0.008 20.1 6.0 29 14-42 28-60 (214)
411 PF08537 NBP1: Fungal Nap bind 20.7 3.5E+02 0.0077 21.5 5.7 25 8-32 178-202 (323)
412 PF05597 Phasin: Poly(hydroxya 20.6 1.5E+02 0.0032 20.3 3.2 20 20-39 110-129 (132)
413 PRK05560 DNA gyrase subunit A; 20.5 2.7E+02 0.0059 24.2 5.4 40 10-49 435-474 (805)
414 PF09766 FimP: Fms-interacting 20.4 4.1E+02 0.0089 20.7 6.0 41 9-49 105-145 (355)
415 PF04380 BMFP: Membrane fusoge 20.4 2E+02 0.0042 17.7 3.5 18 21-38 59-76 (79)
416 KOG3977|consensus 20.4 2.8E+02 0.006 20.8 4.8 48 5-52 85-142 (221)
417 PF07888 CALCOCO1: Calcium bin 20.3 3.9E+02 0.0084 22.7 6.1 17 28-44 173-189 (546)
418 PF14988 DUF4515: Domain of un 20.2 3.5E+02 0.0076 19.6 5.5 20 21-40 49-68 (206)
419 PRK04863 mukB cell division pr 20.2 3.3E+02 0.0072 25.7 6.1 43 7-49 437-479 (1486)
420 PRK14163 heat shock protein Gr 20.1 2.6E+02 0.0057 20.7 4.6 26 21-46 49-74 (214)
421 PTZ00464 SNF-7-like protein; P 20.1 3.6E+02 0.0078 19.7 5.6 36 10-45 16-51 (211)
422 COG3006 MukF Uncharacterized p 20.1 3.6E+02 0.0077 21.8 5.6 43 2-47 213-265 (440)
423 PF15030 DUF4527: Protein of u 20.1 4.2E+02 0.0092 20.5 5.9 37 10-46 28-64 (277)
424 PF03114 BAR: BAR domain; Int 20.1 2.6E+02 0.0057 18.6 4.4 32 18-49 25-56 (229)
No 1
>KOG0614|consensus
Probab=98.09 E-value=8.6e-06 Score=67.66 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
.|++++..+.+|.++++.++.+|++|.++|||+|++.|
T Consensus 39 elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~~~p 76 (732)
T KOG0614|consen 39 ELRQRQTILEELIKEISKLEGEIAKLTNELDKLRSVLP 76 (732)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcCCc
Confidence 34677788889999999999999999999999999774
No 2
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=95.76 E-value=0.042 Score=37.98 Aligned_cols=42 Identities=29% Similarity=0.552 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 6 TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 6 ~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
...+++.+++-.+..+.+|+.+++.||.+|..|+.+|+-..+
T Consensus 81 ~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 81 EIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999998764
No 3
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=92.74 E-value=0.23 Score=34.94 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
|+++..|.-|+.+++++.++|..++..+++.++++
T Consensus 127 QARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~~l 161 (162)
T PF05983_consen 127 QARETLIMMMEEQLEEKREEIEEIRKVCEKAREVL 161 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999998875
No 4
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.47 E-value=1.4 Score=26.73 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYH 52 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~ 52 (85)
.+|+.-|-..+..|++|...+.+....|..|+.+|..+..-+...
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888889999999999999999999999999998888766543
No 5
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.13 E-value=1.7 Score=26.32 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
........+.+-+++..+...+|..|+.+++.+|+
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33466777888888888889999999999988886
No 6
>PRK00295 hypothetical protein; Provisional
Probab=90.21 E-value=2 Score=26.26 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+|+.-+-..+..|++|...+.+.+.+|..|+.+|..+..-+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888899999999999999999999998887664433
No 7
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=89.70 E-value=2.2 Score=28.14 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
..||+.-|+.-++.-.-|-+.+.+.+.+-..|..+|.||++-++...
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d 49 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLD 49 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 47899999999999999999999999999999999999999875544
No 8
>PRK00736 hypothetical protein; Provisional
Probab=89.50 E-value=2.4 Score=25.86 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+|+.-+-..+..|++|...+.+....|..|+.+|.-+..-+
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677778888899999999999999999999998887665444
No 9
>PRK04406 hypothetical protein; Provisional
Probab=89.32 E-value=2.4 Score=26.44 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+|..-|-..+..|++|...+.+...+|..|+.+|..+..-+
T Consensus 14 ~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 14 NDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888899999999999988988888887664433
No 10
>PRK04325 hypothetical protein; Provisional
Probab=88.92 E-value=2.7 Score=26.05 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+|+.-+-..+..|++|...+.+...+|..|+.+|..+..
T Consensus 12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777788888999999999999999888888866543
No 11
>PRK02793 phi X174 lysis protein; Provisional
Probab=88.77 E-value=2.8 Score=25.81 Aligned_cols=42 Identities=31% Similarity=0.432 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+|..-|-..+..|++|...+.+....|..|+.+|..+..-+
T Consensus 11 ~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 11 AELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888899999999999888888888887664433
No 12
>PRK02119 hypothetical protein; Provisional
Probab=88.57 E-value=3 Score=25.83 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+|..-+-..+..|++|...+.+...+|..|+.+|..+..-+
T Consensus 12 ~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 12 AELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888899999999999999998888888765444
No 13
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.98 E-value=1.9 Score=33.63 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=9.3
Q ss_pred HHHHHHHHhHhhhhccC
Q psy14736 33 EEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 33 ~eI~eL~~~ldK~rsv~ 49 (85)
.||.+|+--++.++|.+
T Consensus 124 kEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 124 KEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 35555555555555555
No 14
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=86.81 E-value=2.4 Score=25.12 Aligned_cols=32 Identities=16% Similarity=0.374 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
......|..|+++++....++..|+.+++.++
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566788888888888888888888888773
No 15
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=86.61 E-value=3.5 Score=27.23 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHh
Q psy14736 9 EMQSILQAKESKIRELEEKVKV----QNEEIVQLRSHLD 43 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~e----kd~eI~eL~~~ld 43 (85)
+=+|+.+...+.++.|.+.|.+ ...+|.+|.++||
T Consensus 62 E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 62 EEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455556666778888887777 7888888887775
No 16
>PHA03011 hypothetical protein; Provisional
Probab=86.23 E-value=3.2 Score=28.12 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
|-...+.-+-.|..++..+++.|++|--|+.++||+..-+
T Consensus 76 L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 76 LLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 3333456667788999999999999999999999987643
No 17
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=84.57 E-value=3.1 Score=27.82 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.++..++...+.+|..|++.+...+..|..++.+++.+++++
T Consensus 90 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 90 KDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888889999999999999999999999999988766
No 18
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.43 E-value=4.3 Score=25.07 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy14736 14 LQAKESKIREL 24 (85)
Q Consensus 14 l~~kd~~I~~L 24 (85)
|..+|+.|..|
T Consensus 7 l~EKDe~Ia~L 17 (74)
T PF12329_consen 7 LAEKDEQIAQL 17 (74)
T ss_pred HHhHHHHHHHH
Confidence 33333333333
No 19
>PRK00846 hypothetical protein; Provisional
Probab=84.04 E-value=6.9 Score=24.74 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
.+|..-+-..+..|++|...+......|..|+.+|.
T Consensus 16 ~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 16 VELETRLSFQEQALTELSEALADARLTGARNAELIR 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677788888888888888888888877766
No 20
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=83.60 E-value=1.8 Score=27.55 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
-++|...|..+++||..|...+..||+.+.
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLi 36 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLI 36 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666553
No 21
>KOG4552|consensus
Probab=82.51 E-value=4 Score=30.95 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
++.+..++.|++.+.-+|.+|++|+..|.....++
T Consensus 70 ~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iL 104 (272)
T KOG4552|consen 70 QKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVIL 104 (272)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 47778899999999999999999999988766554
No 22
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.43 E-value=5.2 Score=30.67 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
.++|.-|...+..|.++...+++.+.+|.+++.++.+|+.-
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e 88 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666666666665543
No 23
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=82.30 E-value=5.1 Score=30.59 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
.++..+++.++.++++..+++..+.++.+++++|++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556677888899999999999999999999999999864
No 24
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=81.79 E-value=7.6 Score=23.54 Aligned_cols=36 Identities=8% Similarity=0.185 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 12 SILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 12 ~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
..++.....+..++.+++..+++..+|+.++.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344667777888888888888888888888887665
No 25
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=81.75 E-value=5.9 Score=26.13 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
..+...++.....+..++..+....++|..|+.|+
T Consensus 83 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 83 EQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444555555555555555555555555543
No 26
>PRK11637 AmiB activator; Provisional
Probab=81.55 E-value=4.5 Score=31.78 Aligned_cols=40 Identities=13% Similarity=0.283 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
++..|...+..|..++.++...+.+|..++.+|+..+..+
T Consensus 87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666666666666666666666655554
No 27
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.49 E-value=5.3 Score=34.12 Aligned_cols=46 Identities=15% Similarity=0.348 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
.||..+|-.-...|+.++..|..+|.||.+|+..|-.+-.|+|.-+
T Consensus 618 ldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~~~ 663 (697)
T PF09726_consen 618 LDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPSDS 663 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 4677777666667899999999999999999999999999998733
No 28
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.42 E-value=5.5 Score=27.47 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
...|..|.+|..++.+...++..|+.+|..+.+..
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455566666666666666666666666665543
No 29
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=81.41 E-value=5.2 Score=26.24 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+....+..++.+++..+.+...|+.+++.+++
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345556666666666666666666666666665
No 30
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.36 E-value=5.2 Score=34.13 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+...+......+..|+.++.+++.+|..|.++|+.|+--+
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677788888888888888888888888888887544
No 31
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=81.18 E-value=2.4 Score=26.20 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 23 ELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 23 ~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.|++.|.++|+.|.+|..+..++..
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSK 26 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4678899999999999988887653
No 32
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=80.72 E-value=5 Score=25.85 Aligned_cols=42 Identities=10% Similarity=0.362 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.++..++...+..|..+++.++..++.|..+..+++.++..+
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778888888888888888888888888877654
No 33
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=80.53 E-value=10 Score=24.29 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
.-+..|..+++.+...+.++.+++.+|.++
T Consensus 74 ~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 74 TIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555443
No 34
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=80.06 E-value=8.7 Score=26.87 Aligned_cols=49 Identities=18% Similarity=0.341 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCC
Q psy14736 4 VHTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYH 52 (85)
Q Consensus 4 ~~~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~ 52 (85)
.+.+++|-..++..++.|..|...+...+..|.++++-++-+.++-.-.
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~ 53 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAG 53 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3466899999999999999999999999999999999999888766444
No 35
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=78.91 E-value=4.8 Score=26.38 Aligned_cols=42 Identities=14% Similarity=0.454 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.++..++...+.+|+.|++.++..++.|..++.+++.+...+
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888999999999999999999999998877654
No 36
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=78.78 E-value=7.6 Score=27.52 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+.....|..|.+++..+|..|..+-..|..+++.+
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L 59 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKEARKEL 59 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778899999999999999999999998888877
No 37
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=78.66 E-value=4.7 Score=30.27 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
....+..+||+++.....+|..|+.++++++.=
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578889999999999999999998887753
No 38
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=78.64 E-value=9.4 Score=21.76 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..+...+..|+..+.....++..|+.++..++
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666788888888888889888888887764
No 39
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=78.55 E-value=8.6 Score=22.50 Aligned_cols=31 Identities=35% Similarity=0.496 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.+...|..|+..+.....+...|..+++.+.
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666665555544
No 40
>PRK00736 hypothetical protein; Provisional
Probab=77.99 E-value=5.2 Score=24.36 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy14736 21 IRELEEKVKVQNEEI 35 (85)
Q Consensus 21 I~~Le~~l~ekd~eI 35 (85)
|.+||.++...+..|
T Consensus 7 i~~LE~klafqe~ti 21 (68)
T PRK00736 7 LTELEIRVAEQEKTI 21 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 41
>PRK00295 hypothetical protein; Provisional
Probab=77.58 E-value=5.5 Score=24.26 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
...+..|.+..++|+.....+..|...|.-.
T Consensus 22 e~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 22 QALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444333
No 42
>smart00338 BRLZ basic region leucin zipper.
Probab=77.29 E-value=9.5 Score=22.33 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.+...|..|+.++.....+...|..+++.++
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555554443
No 43
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=76.99 E-value=8.4 Score=24.62 Aligned_cols=41 Identities=17% Similarity=0.504 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+.+++...+.+|..|+..+......+.+++.++..+++.+
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l 114 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTL 114 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777788888888888888888888888888777654
No 44
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=76.98 E-value=6.1 Score=25.77 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+..++...+.+|..|++.++..+..+..++.++.....++
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999999998888877665
No 45
>PRK02793 phi X174 lysis protein; Provisional
Probab=76.98 E-value=5.8 Score=24.42 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14736 20 KIRELEEKVKVQNEEIVQL 38 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL 38 (85)
+|.+||.++...+..|.+|
T Consensus 9 Ri~~LE~~lafQe~tIe~L 27 (72)
T PRK02793 9 RLAELESRLAFQEITIEEL 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333333
No 46
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.66 E-value=7 Score=24.60 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
+-.++.-|++|...+.+..-.|..++.+|+
T Consensus 17 ~AfQE~tieeLn~~laEq~~~i~k~q~qlr 46 (72)
T COG2900 17 LAFQEQTIEELNDALAEQQLVIDKLQAQLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666665555543
No 47
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=76.51 E-value=23 Score=24.73 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCCCCCCccccccccccccccccceee
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLARPRKQRAQGIS 78 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~~~~~~~~~~~~~~~~~r~kraqgIS 78 (85)
.....++....+=+.|+..|..+-.|+..|+.+=--+=..+|+-.+..|+-. .|..+|+.|-+
T Consensus 29 ~~~e~~~~Lk~rk~~Lee~L~~kl~ELk~lClrEAELTG~LP~E~PL~pGEk-------~P~iRRRvGta 91 (138)
T PF11819_consen 29 AKKERLRALKKRKQALEERLAQKLEELKKLCLREAELTGELPPEYPLEPGEK-------PPKIRRRVGTA 91 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCCCCCC-------CCccccccCcc
Confidence 3444455556667788999999999999998777777777777776555433 35556666654
No 48
>KOG3119|consensus
Probab=76.35 E-value=8.7 Score=28.95 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
.+...+|..|+++....-..|.+|+.+|.+|+.++....
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~ 256 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLP 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355567999999999999999999999999999986543
No 49
>smart00338 BRLZ basic region leucin zipper.
Probab=76.02 E-value=13 Score=21.70 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
.+...+..+..|+.+..+....+..|..++..+.+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777777777777766654
No 50
>PRK00846 hypothetical protein; Provisional
Probab=75.82 E-value=7.1 Score=24.67 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..+.+|.+||.++...+..|.+|...+-+-+
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq 40 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADAR 40 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777666666666665544433
No 51
>KOG3088|consensus
Probab=75.62 E-value=3.2 Score=32.48 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQL 38 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL 38 (85)
|..|++++++++..+.+|+.++.+++.+
T Consensus 66 q~eL~~rqeEL~Rke~ELdRREr~~a~~ 93 (313)
T KOG3088|consen 66 QAELLKKQEELRRKEQELDRRERALARA 93 (313)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 4556677777777777777777777764
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.25 E-value=14 Score=27.04 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+++..+...+..|.+|+.+.++..+++..+++++|...
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445556666666666666666666666665543
No 53
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=74.35 E-value=13 Score=29.45 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
+...++.....++.++.++.....++..++++|+++++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334445666777777777788888888899999988764
No 54
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=74.25 E-value=7.3 Score=23.48 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+.+|+..+...+.||..++.++.+-+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666665543
No 55
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=73.60 E-value=17 Score=25.65 Aligned_cols=39 Identities=33% Similarity=0.472 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.+|+..+......|..|+.+|.+++..|..|+.++.-++
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666666666666666555443
No 56
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.44 E-value=10 Score=26.64 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..++.|++|+++|..++.++..|+.+.+.+.
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888888877654
No 57
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=73.28 E-value=15 Score=23.15 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=30.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 8 DEMQSILQAK-ESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 8 ~~lq~~l~~k-d~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+.+.++... ++....|.....+.+.+|.+|+..++.+..
T Consensus 61 ~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 101 (103)
T cd01106 61 KEIKELLKDPSEDLLEALREQKELLEEKKERLDKLIKTIDR 101 (103)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666555 667788888888888888888888877654
No 58
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=72.82 E-value=7.4 Score=28.89 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+..+.+|+.|+.+|.+||+.|.-|+.+.-+=.
T Consensus 139 qemE~RIK~LhaqI~EKDAmIkVLQqrs~~~~ 170 (205)
T PF12240_consen 139 QEMENRIKALHAQIAEKDAMIKVLQQRSRKDP 170 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 57788999999999999999999997765433
No 59
>PRK04325 hypothetical protein; Provisional
Probab=72.27 E-value=20 Score=22.08 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14736 20 KIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~ 39 (85)
+|.+||.++...+..|.+|.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN 29 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLN 29 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 60
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.97 E-value=10 Score=32.51 Aligned_cols=33 Identities=18% Similarity=0.511 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+++++..|..|+++|.++...|.+|...|...+
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999998888
No 61
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=71.84 E-value=10 Score=24.57 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.-+..|++|+.++.....++..|+.+||.-++
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999998887553
No 62
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=71.77 E-value=21 Score=23.74 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 5 HTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 5 ~~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
|+++.|+..+++....|..|...+...+..|.+++.-++.+..+-
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556788888888888899999999988888888888777666543
No 63
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=71.67 E-value=9.5 Score=27.28 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhH
Q psy14736 6 TVDEMQSILQAKESKIRELEEKVKVQN----------EEIVQLRSHL 42 (85)
Q Consensus 6 ~~~~lq~~l~~kd~~I~~Le~~l~ekd----------~eI~eL~~~l 42 (85)
++.||..-|.+--++-.-||.+|+||+ +|++.|+-||
T Consensus 1 SLeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 1 SLEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357887777776777777888888877 4555666666
No 64
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=71.46 E-value=8.8 Score=24.01 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+++.+.+|..+++.|+.++.-|.+|++
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666666654
No 65
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=70.81 E-value=8.3 Score=30.18 Aligned_cols=39 Identities=18% Similarity=0.469 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.-+...+..+...|..|+.++.+.+.+|.-.+.++|.|=
T Consensus 141 ~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yW 179 (308)
T PF06717_consen 141 NQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYW 179 (308)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445566678888899999999999999999999999875
No 66
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=70.53 E-value=13 Score=25.57 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQL 38 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL 38 (85)
++|+..++.||..|..|..+|++....-..|
T Consensus 97 ~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 97 KKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555666666666666666665554444333
No 67
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=70.41 E-value=6 Score=22.63 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
-|..+|..|.++.+.||.....--.....+..
T Consensus 4 Ql~~kd~qI~~l~kLLDQQQ~L~L~~~k~le~ 35 (45)
T PF04394_consen 4 QLEEKDKQIEELQKLLDQQQQLALQDNKKLEE 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777665443333333333
No 68
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=69.66 E-value=25 Score=22.13 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 22 RELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
....+-....++||..|+.+|+.
T Consensus 53 ~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 53 QAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344457778888888888865
No 69
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.59 E-value=22 Score=25.75 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+.|+.-|+......+.++..+.++|.+|..++.+|.+|+.-+
T Consensus 71 r~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~ 112 (194)
T PF15619_consen 71 RVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLS 112 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888899999999999999999999999988754
No 70
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=69.57 E-value=13 Score=23.27 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
.++..|+.|+.++..+.+.+..+++.+
T Consensus 56 eq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 56 EQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555555555544
No 71
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.01 E-value=20 Score=27.36 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+.+++.++...+..|.++..+..+++
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l~ 257 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333333
No 72
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=68.88 E-value=30 Score=22.68 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 12 SILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 12 ~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..+...+..+..|+.++.+.+..+..|...+++|.
T Consensus 80 ~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~ 114 (118)
T cd04776 80 KMLEKIEKRRAELEQQRRDIDAALAELDAAEERCR 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666666666666666666554
No 73
>KOG3335|consensus
Probab=68.81 E-value=27 Score=25.52 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+....+.+|+.++++....+.+|.+.|.+-++-+
T Consensus 109 ~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el 143 (181)
T KOG3335|consen 109 MELRLKVEKLENAIAELTKFFSQLHSKLNKPESEL 143 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 34444445555555555555555555555544444
No 74
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=68.71 E-value=20 Score=28.10 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
++-....+++-+..|.++|.||.+|+++|-.+|-
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444455666666777788888888887776653
No 75
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=68.26 E-value=23 Score=24.38 Aligned_cols=43 Identities=14% Similarity=0.349 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+.+|..++...+..|.+...+-.....++.+....|.+|+..+
T Consensus 23 ~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m 65 (135)
T PRK10947 23 LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREML 65 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777766666666666666666666666666666665443
No 76
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=68.00 E-value=26 Score=25.12 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
++...+.....+.+|..++...+.++..|...+.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444455555555555555555554443
No 77
>PRK04406 hypothetical protein; Provisional
Probab=67.84 E-value=26 Score=21.69 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
+.+|.+||.++...+..|.+|...
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~ 33 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDA 33 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444433
No 78
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=67.82 E-value=30 Score=22.93 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 6 TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 6 ~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
|+.+|..++...+..+..|+.=+.+.+..+..++.-++.++....
T Consensus 2 S~~~m~~Ll~~E~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~ 46 (134)
T PF08336_consen 2 SVADMEKLLELEEELISNLRNYIEELQEKLDTLKRFLDEMKREHE 46 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888888888888887777777654
No 79
>PRK14011 prefoldin subunit alpha; Provisional
Probab=67.53 E-value=13 Score=25.86 Aligned_cols=41 Identities=17% Similarity=0.394 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
++..++...+.+|+.|++..+..+..|.++...++.++.++
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L 125 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKEL 125 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777777776655
No 80
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.28 E-value=24 Score=22.52 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
-.++-..+..++.++.++...+..+..+..++..++.-
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777777777777777766653
No 81
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=67.16 E-value=23 Score=20.75 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~ 40 (85)
...+...+...+..|+.+..+.+....+|..|++
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566667777788888888888888888888833
No 82
>PRK14127 cell division protein GpsB; Provisional
Probab=66.69 E-value=27 Score=23.33 Aligned_cols=27 Identities=11% Similarity=0.374 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
++.|.+++.+..+++..|+.+|+.|++
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444
No 83
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=66.65 E-value=17 Score=21.76 Aligned_cols=30 Identities=10% Similarity=0.259 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
-+.++..||++|.+-+.+...-..++.+|.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466788888988888888888887777664
No 84
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=66.62 E-value=24 Score=27.51 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.++...+++....+.+|..+++....++..+++++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 11 SELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444555677788888888888888888888888888775
No 85
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=66.24 E-value=20 Score=26.44 Aligned_cols=30 Identities=17% Similarity=0.418 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+.|-+++..++++|..|+.+++.+..+.
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~ela 155 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKELA 155 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888888888887777766654
No 86
>KOG3990|consensus
Probab=66.17 E-value=11 Score=29.33 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
+++..+++|+.|++.|.++|.+|.+...+|.
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqis 256 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQIS 256 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhh
Confidence 4567778888888888888888887766553
No 87
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=65.75 E-value=26 Score=24.03 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+|..-+-+++..|..|...+...+.++..+...|....+.+
T Consensus 24 K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 24 KQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456677777777777777777777777776666544
No 88
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=65.27 E-value=28 Score=21.00 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~ 39 (85)
|+.-+.+.++|+.++..+..++.+++
T Consensus 34 LqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 34 LQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444443
No 89
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=64.91 E-value=28 Score=20.94 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+.+..++|+.....+..|...|
T Consensus 27 v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 27 VTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 90
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=64.41 E-value=39 Score=22.50 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVK-------VQNEEIVQLRSHLDK 44 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~-------ekd~eI~eL~~~ldK 44 (85)
.+|..-|+.+|..|+.++.+++ .....|..|+.+++.
T Consensus 29 ~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 29 AELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777777764 455667777777763
No 91
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=64.15 E-value=14 Score=24.78 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
--.+.|.+|..++..+++.|+.+.+.|+-+++++
T Consensus 39 ~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL 72 (106)
T PF11594_consen 39 VLKEEINELKEELQRKEQLLQKHYEKIDYWEKLL 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999888876
No 92
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=64.04 E-value=14 Score=21.39 Aligned_cols=33 Identities=15% Similarity=0.384 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
|..|..++...+..++.|+.-+.+|+-|.-+..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp~ 33 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAELFPN 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 567888899999999999999999998876654
No 93
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=63.92 E-value=27 Score=20.34 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 12 SILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 12 ~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
..+...+..+..|+.+.+....++..|..++..+.+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666677777777777777777777666543
No 94
>PRK02119 hypothetical protein; Provisional
Probab=63.52 E-value=32 Score=21.13 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14736 19 SKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~ 39 (85)
.+|.+||.++...+..|.+|.
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN 29 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELN 29 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 95
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.44 E-value=31 Score=26.38 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.+++.-+...+..|+++..++.+...+|.++...+++.+
T Consensus 233 ~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 233 AELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666677777777777777777777666655544
No 96
>PRK09039 hypothetical protein; Validated
Probab=63.42 E-value=22 Score=27.59 Aligned_cols=8 Identities=38% Similarity=0.949 Sum_probs=3.4
Q ss_pred HhhhhccC
Q psy14736 42 LDKFQSVF 49 (85)
Q Consensus 42 ldK~rsv~ 49 (85)
|..|+|-|
T Consensus 192 l~~~~~~~ 199 (343)
T PRK09039 192 LNRYRSEF 199 (343)
T ss_pred HHHhHHHH
Confidence 34444444
No 97
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=63.04 E-value=27 Score=22.53 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
+.+|+.++..+...+..+..|+..+..
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433333
No 98
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=62.61 E-value=28 Score=22.73 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 6 TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 6 ~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
...+++.-+......+.+++.+......+|..|++--|=+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 45788888888899999999999999999999988544333
No 99
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=61.83 E-value=2.6 Score=30.67 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCCCCC
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSP 57 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~~~~~ 57 (85)
+|..+++++...|.+|++.+.+....|.+.+.+|.-++--+.......|
T Consensus 1 ELR~lVq~Qq~~i~ELk~~~aeq~~ql~eqkREl~lLk~yirAlR~sNP 49 (179)
T PF08941_consen 1 ELRELVQQQQTKIAELKKEQAEQQQQLSEQKRELELLKEYIRALRSSNP 49 (179)
T ss_dssp -------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4667788999999999999999999999999998877766654443333
No 100
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=61.45 E-value=27 Score=25.69 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
-|+..|+.-+..+.-|+..|..+..++.+|-..||-+=+
T Consensus 165 aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~ 203 (207)
T PF05010_consen 165 ALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELIS 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888889999999999999999999999987543
No 101
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=61.31 E-value=21 Score=21.34 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
.+.+.+.+|.+-...|..|+.+|.+|+++
T Consensus 43 ~~~~~~~~l~es~~ki~~Lr~~L~k~~~~ 71 (72)
T cd00089 43 LLAEAEQMLRESKQKLELLKMQLEKLKQE 71 (72)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47788889999999999999999999865
No 102
>KOG4603|consensus
Probab=61.21 E-value=35 Score=25.16 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHh
Q psy14736 10 MQSILQAKESKIRELEEKV--KVQNEEIVQLRSHLD 43 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l--~ekd~eI~eL~~~ld 43 (85)
|+....--+..|++|.+-| .+.+++|.+|+.++.
T Consensus 98 l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~ 133 (201)
T KOG4603|consen 98 LQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 3333333344444443332 233344444444443
No 103
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=61.10 E-value=31 Score=23.53 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
++...+++++.|+.++...+.-...++++++++++.+.
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667777777777777777777777777663
No 104
>KOG0995|consensus
Probab=60.93 E-value=24 Score=29.95 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+..+..+..|..++.++++||..|+.+.|-++-.+
T Consensus 290 ~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 290 QHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788888888888888888888888777544
No 105
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=60.48 E-value=34 Score=26.45 Aligned_cols=32 Identities=38% Similarity=0.416 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+.-+......|++...+..+...+|.++...+
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444333
No 106
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=60.45 E-value=35 Score=20.51 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
..+..+..||......+..|..++..|+++.+.
T Consensus 17 ~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 17 NHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888899999999999998764
No 107
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=60.11 E-value=18 Score=22.95 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKV 30 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~e 30 (85)
.+++..+..-...+.+|++-++.
T Consensus 3 ~eme~~y~~~~~~l~~le~~l~~ 25 (90)
T PF14131_consen 3 QEMEKIYNEWCELLEELEEALEK 25 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 108
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=60.01 E-value=30 Score=19.69 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 25 EEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 25 e~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.++|..+|..|.++...||..+.
T Consensus 2 ~~Ql~~kd~qI~~l~kLLDQQQ~ 24 (45)
T PF04394_consen 2 DEQLEEKDKQIEELQKLLDQQQQ 24 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888777777653
No 109
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=59.89 E-value=30 Score=19.96 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+.+.+.++..++..|.+|+.=+|.+-.
T Consensus 8 ~l~~~e~~~~~k~~~v~eLe~YiD~LL~ 35 (48)
T PF09457_consen 8 LLKKQEEENARKDSRVRELEDYIDNLLV 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888888888877644
No 110
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=59.82 E-value=29 Score=23.43 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+++..-..|...|.++..++..|+.+.+.++.
T Consensus 76 k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~k 108 (120)
T PF14931_consen 76 KQREAQQQQLQALIAEKKMELERLRSEYESLQK 108 (120)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666666655555543
No 111
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=59.38 E-value=17 Score=31.63 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
-+|.+|..||..|..+|+-|...+++|..|++.+
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~ 261 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRG 261 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678888899999999998888888888887544
No 112
>KOG1655|consensus
Probab=59.36 E-value=28 Score=26.08 Aligned_cols=39 Identities=13% Similarity=0.349 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.|+.++.--+.+-..++..+...|.+|..++.+|.|.|+
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~ 54 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRP 54 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567777777888888899999999999999999988764
No 113
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=59.29 E-value=36 Score=24.54 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
....++..+...+.....+|..++..+++.+.
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~ 98 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRE 98 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 114
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=58.77 E-value=35 Score=26.53 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
...+-+-.+-|.++...|++.+.+|..|+..|.+|...+.
T Consensus 73 ~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~ 112 (301)
T PF06120_consen 73 RANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLA 112 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455666778888888888888888888888876543
No 115
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=58.66 E-value=47 Score=21.42 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
..-+..|+.|++.+......+.+++.+|..
T Consensus 77 e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 77 ETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666665543
No 116
>PRK11239 hypothetical protein; Provisional
Probab=58.31 E-value=16 Score=27.38 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
..+..|+.+++..++++.+|+..++.|.+-
T Consensus 183 ~~~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 183 AVDGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888888888763
No 117
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=58.15 E-value=46 Score=21.12 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
++|..-|..+++.|+.|. ..|..|+..|-||
T Consensus 8 k~L~~kL~~K~eEI~rLn-------~lv~sLR~KLiKY 38 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLN-------ILVGSLRGKLIKY 38 (76)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 455555555555555544 4444444444444
No 118
>PHA01750 hypothetical protein
Probab=57.50 E-value=40 Score=21.17 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
..|.++....|+.+..|.+++..+||
T Consensus 49 ~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 49 TEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 34555555566666666666666665
No 119
>PRK09343 prefoldin subunit beta; Provisional
Probab=57.30 E-value=54 Score=21.73 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
..-+..|..|++........+.+++++|..+-+
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666665555443
No 120
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=57.07 E-value=50 Score=22.72 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..|..++.+.+..|.+...+-.+...+.++....|.+|+..+
T Consensus 24 e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~ 65 (134)
T PRK10328 24 DVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLELM 65 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665555555555554444444455555555554443
No 121
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.99 E-value=47 Score=20.89 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLR-------SHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~-------~~ldK~rsv~ 49 (85)
..+.+|.+||.++..++..|.+|. -.+||.+--+
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~ql 45 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQL 45 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665554 4556665544
No 122
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=56.98 E-value=49 Score=24.16 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..+..++.+++.++..+.+|..|..+++...
T Consensus 67 ~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 67 NLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555554443
No 123
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=56.83 E-value=41 Score=25.11 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+..+...-..|+++.-+|+.....=.++...||...
T Consensus 67 q~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 67 QSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444556543
No 124
>PF14772 NYD-SP28: Sperm tail
Probab=56.60 E-value=30 Score=22.01 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhH
Q psy14736 25 EEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 25 e~~l~ekd~eI~eL~~~l 42 (85)
+..++.||..|..|..+|
T Consensus 68 e~ii~~Kd~lI~~L~~eL 85 (104)
T PF14772_consen 68 ERIIDRKDALIKELQQEL 85 (104)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555444
No 125
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=56.35 E-value=41 Score=20.02 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
.+...|.+.+..|++-++.|.++.-++
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~ 48 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEV 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444
No 126
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=56.12 E-value=52 Score=21.15 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..+...|..|..+|.....+|..+...|..|.
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777777666654
No 127
>PF07988 LMSTEN: LMSTEN motif; InterPro: IPR012642 Proteins containing the Wos2 domain are involved in the regulation of the cell cycle [] and are Myb-related transcriptional activators. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2AGH_A 1SB0_B.
Probab=55.90 E-value=13 Score=21.56 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQ 37 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~e 37 (85)
.|+.+|++||..|..-++|++.
T Consensus 25 dkekrikelelllms~enev~~ 46 (48)
T PF07988_consen 25 DKEKRIKELELLLMSAENEVRR 46 (48)
T ss_dssp --HHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHhc
Confidence 6788999999999999998875
No 128
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=55.56 E-value=55 Score=21.27 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+.|+..+++....|..|..++......|.++..-++-+...-
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777788888888888888888888777776666666553
No 129
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=54.88 E-value=27 Score=21.47 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
+.+|+.++.-..+||..|+-++.|
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777777777654
No 130
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=54.20 E-value=27 Score=20.82 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
.+|..-+-..+..|..+++++.+.-+.|..+..-+.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555554444333
No 131
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=53.99 E-value=40 Score=23.00 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
.....+++.|...|.+||.+|..|...+
T Consensus 142 ~~l~~~~~~L~~~l~~KD~~i~~l~~~~ 169 (171)
T PF09302_consen 142 SALQRQVESLKDLLKEKDKEIEKLRDKL 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666778999999999999999988554
No 132
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=53.91 E-value=39 Score=23.28 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+...+..+..+++++++.++.+.++.+++++++.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666666666655555544
No 133
>KOG3335|consensus
Probab=53.71 E-value=33 Score=25.06 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYH 52 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~ 52 (85)
++...|.+|...+..+++.|+++++.++-+.+++-..
T Consensus 103 ~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 103 KRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 5566789999999999999999999999998887554
No 134
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=53.40 E-value=37 Score=20.54 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
.+|.++|+.+. +|...+...++|++..+.++
T Consensus 3 ~ELr~VL~ERN----eLK~~v~~leEEL~~yk~~~ 33 (60)
T PF11461_consen 3 QELREVLQERN----ELKARVFLLEEELAYYKSEL 33 (60)
T ss_dssp TTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHhccc
Confidence 67788887554 34444444455555444433
No 135
>PRK14127 cell division protein GpsB; Provisional
Probab=53.23 E-value=66 Score=21.47 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+......+.+|+.++......+.+++.++..+++.-
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~ 74 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSS 74 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3356667899999999999999999999999887653
No 136
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=53.16 E-value=40 Score=18.95 Aligned_cols=30 Identities=23% Similarity=0.467 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhHhh
Q psy14736 15 QAKESKIRELEEKVK-VQNEEIVQLRSHLDK 44 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~-ekd~eI~eL~~~ldK 44 (85)
+.|.+.++++-++|. -|++.|..++.+|.+
T Consensus 7 ~~KqEIL~EvrkEl~K~K~EIIeA~~~eL~r 37 (40)
T PF08776_consen 7 RLKQEILEEVRKELQKVKEEIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777888888874 577778888887765
No 137
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=52.90 E-value=38 Score=28.07 Aligned_cols=26 Identities=4% Similarity=0.147 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
.....++.+|.++++++..|+.+++-
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777888888877753
No 138
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=52.57 E-value=73 Score=23.01 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..-++.+.+.|.+-++...+....+.+|+.+|.+.+
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344467778888888888888888888888887654
No 139
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=52.30 E-value=53 Score=27.18 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
..+++..+.....+...|...|.+--.+|..|+.+|+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 37788888888899999999999999999999999999875
No 140
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=52.06 E-value=26 Score=20.83 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCC
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYH 52 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~ 52 (85)
...+.+..|.+-...|..|+.+|.+|++..+..
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~~~ 66 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQRSQNS 66 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 477888999999999999999999999866443
No 141
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=52.01 E-value=50 Score=19.79 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~ 40 (85)
++++..+...+..++.++.+.++...+|..|.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 556666666666777777777777777776664
No 142
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.89 E-value=52 Score=23.51 Aligned_cols=31 Identities=13% Similarity=0.427 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.+...+..|++++......|.+|+..|....
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555543
No 143
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=51.84 E-value=70 Score=24.60 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
+.+||++-.+.+.+|..|..++.
T Consensus 66 L~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 144
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=51.62 E-value=59 Score=23.32 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
++|+..|-+-++.|.-|..-|..|+..-.+|+..|
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56777777888888888888888888888888774
No 145
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.27 E-value=67 Score=24.48 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.++.++++...+.++|..+.+.+++|+
T Consensus 58 e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 58 ELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555
No 146
>PF12848 ABC_tran_2: ABC transporter
Probab=50.86 E-value=52 Score=19.62 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
-..+.+++.....++......+.+|..|..-++++..
T Consensus 16 ~~y~~~k~~~~~~~~~~~~~~~k~~~~l~~~i~r~~~ 52 (85)
T PF12848_consen 16 SDYLEQKEERRERQERQYEKQQKEIKRLEEFIRRFRA 52 (85)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888888888888888876
No 147
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=50.36 E-value=58 Score=19.99 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
+...+..++.++.+++.....+..+..++.+++..
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555554443
No 148
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=50.02 E-value=15 Score=30.42 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
+|++|+++|++..+++.+|...++|
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccch
Confidence 6777777777777777766666655
No 149
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=49.84 E-value=54 Score=22.89 Aligned_cols=36 Identities=14% Similarity=0.367 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
++-.++...+.+|++|++.+...++.|++|-..+..
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~ 126 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQ 126 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 150
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=49.64 E-value=38 Score=23.89 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+......|..|+.++...+..|..|..+|
T Consensus 111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 111 LSEKERRLAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 151
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=49.57 E-value=31 Score=25.24 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
+.+-++|.+|.+-+.+|..++.++.-+..-+.+++
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~st 196 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYST 196 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEE
Confidence 34668889999999999999999999888887766
No 152
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=49.28 E-value=63 Score=22.27 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14736 12 SILQAKESKIRELEEKVK 29 (85)
Q Consensus 12 ~~l~~kd~~I~~Le~~l~ 29 (85)
.+|-++|+.|+-|..+..
T Consensus 78 Kvl~aKdETI~~lk~EN~ 95 (126)
T PF13118_consen 78 KVLDAKDETIEALKNENR 95 (126)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 344555555555555543
No 153
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.12 E-value=55 Score=25.11 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
..+..|.+++.++...+.+|.++++-|
T Consensus 70 ~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 70 ELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444333333
No 154
>COG1422 Predicted membrane protein [Function unknown]
Probab=48.83 E-value=86 Score=23.23 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhHhhhhc
Q psy14736 8 DEMQSILQAKESKIRELE--------EKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le--------~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+++|...++..+..++.. ++|.+++.++...+.++-|.+.
T Consensus 75 ~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qf 122 (201)
T COG1422 75 KELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQF 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555554444444443 4788899999999999988764
No 155
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=48.51 E-value=85 Score=21.66 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
+.+...|.++...++....++..|+.+
T Consensus 56 ~~Qr~~l~~l~~~l~~l~~eL~~Lr~~ 82 (126)
T PF07028_consen 56 ESQRSELKELKQELDVLSKELQALRKE 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 156
>PRK14161 heat shock protein GrpE; Provisional
Probab=48.11 E-value=60 Score=23.23 Aligned_cols=30 Identities=10% Similarity=0.366 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
-...|.+|++++.+..+....++-+++.||
T Consensus 24 ~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 24 ANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666555655555555
No 157
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=47.66 E-value=40 Score=27.32 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~ 39 (85)
-.+.+|..|+.++++.|.||..++
T Consensus 141 Dp~~Ri~~Le~e~~~i~~EI~~l~ 164 (478)
T PF11855_consen 141 DPERRIAELEREIAEIDAEIDRLE 164 (478)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788887777777777766
No 158
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=47.57 E-value=83 Score=20.99 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
......+.+|..+.....-|-..|+..|+++.+
T Consensus 25 ~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 25 GALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444555555555555555566666665533
No 159
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=47.15 E-value=70 Score=20.01 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
.+.+.+..|+.|+.++...++++.-++..+.
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666655555543
No 160
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=46.62 E-value=89 Score=21.05 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~ 39 (85)
+..|+..|++++..+.-+..++.....+-..+.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~ 50 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELR 50 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666776666666655555544443333333
No 161
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=46.44 E-value=84 Score=24.90 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 5 HTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 5 ~~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
...+.+...+......++.|+.++....+++..++.++.++++-+..-.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 15 HTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446666667777788999999999999999999999999988775443
No 162
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=46.27 E-value=87 Score=20.83 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..|..++-.-...-..|...|..+|..|+.+..++|.+-
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~ 53 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLT 53 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556655556667889999999999999999998753
No 163
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=46.10 E-value=95 Score=21.24 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 24 LEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 24 Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
|...+.+...+|..|...|+.|++
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445666666677777777776
No 164
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=46.02 E-value=64 Score=19.27 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.|.+|...+......|.+|.+.++.+++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555443
No 165
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=45.77 E-value=42 Score=23.50 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
+....+.+.+.-..+-+.+|.+|+.+|+++++..|+..
T Consensus 93 ~e~~~~~~~~~~~~~s~~~i~~l~keL~~i~~~~P~e~ 130 (161)
T PF05873_consen 93 QEKEAIKEAKEFEAESKKRIAELEKELANIESARPFEQ 130 (161)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHh
Confidence 44555666777778888999999999999999876554
No 166
>PF08340 DUF1732: Domain of unknown function (DUF1732); InterPro: IPR013551 This domain of unknown function is found at the C terminus of bacterial proteins, many of which are hypothetical and include proteins of the YicC family.
Probab=45.58 E-value=16 Score=23.66 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhHhhhhccCCCC
Q psy14736 30 VQNEEIVQLRSHLDKFQSVFPYH 52 (85)
Q Consensus 30 ekd~eI~eL~~~ldK~rsv~~~~ 52 (85)
.-.+||..|++|++.|+..+...
T Consensus 12 DI~EEl~RL~sH~~~f~~~l~~~ 34 (87)
T PF08340_consen 12 DISEELVRLKSHLKQFRELLESE 34 (87)
T ss_pred chHHHHHHHHHHHHHHHHHHhcC
Confidence 45789999999999999999654
No 167
>KOG0728|consensus
Probab=45.29 E-value=84 Score=25.03 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+++..+.++..+++.|+.+-.+.+..++-|+.+|.-++.
T Consensus 27 ~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe 66 (404)
T KOG0728|consen 27 EELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQE 66 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 6788888899999999999999999999999999877663
No 168
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=45.23 E-value=57 Score=18.42 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 12 SILQAKESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 12 ~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
......+..+..|+.+......+|..|+.+
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344566777888888888888888888754
No 169
>PTZ00420 coronin; Provisional
Probab=45.09 E-value=33 Score=28.62 Aligned_cols=21 Identities=5% Similarity=-0.121 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--Hh
Q psy14736 21 IRELEEKVKVQNEEIVQLR--SH 41 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~--~~ 41 (85)
|..|+.++.+++++|++|+ .+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~ 451 (568)
T PTZ00420 429 TKKFTFFKKGEHNDGFSSVDSFK 451 (568)
T ss_pred HHHHHHHHhhhHHHHHHhhhhcc
Confidence 8889999999999999999 55
No 170
>PRK05260 condesin subunit F; Provisional
Probab=45.07 E-value=63 Score=26.59 Aligned_cols=44 Identities=23% Similarity=0.452 Sum_probs=28.9
Q ss_pred CCccccHHHHHHHHH----HHHHHHHHHHH------HHHHHHHHHHHHHHhHhhhhc
Q psy14736 1 MGTVHTVDEMQSILQ----AKESKIRELEE------KVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 1 ~~~~~~~~~lq~~l~----~kd~~I~~Le~------~l~ekd~eI~eL~~~ldK~rs 47 (85)
+||+ +|||.+|. +....+...+. .++.-|+.+..|+.+||...|
T Consensus 212 sgtL---RELqdtL~aagD~lqaqLl~IQ~~~~~~~~l~~vd~~~~~Lq~kLDRI~s 265 (440)
T PRK05260 212 SGTL---RELQDTLEAAGDKLQANLLRIQDATMGRDDLDFVDRLVFDLQSKLDRIIS 265 (440)
T ss_pred HhHH---HHHHHHHHHhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4677 99999995 22223333332 345678888899999988655
No 171
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=45.07 E-value=93 Score=23.45 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
++|+..++.-..++..|+.+|.+.++++..|..++.-.+.
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666666666666666666665554443
No 172
>PF14772 NYD-SP28: Sperm tail
Probab=44.81 E-value=80 Score=20.01 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIV 36 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~ 36 (85)
.+..+|..||..|..|..+|...|..-.
T Consensus 66 ~~e~ii~~Kd~lI~~L~~eL~~~deqy~ 93 (104)
T PF14772_consen 66 ACERIIDRKDALIKELQQELKEADEQYV 93 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445557899999999999999988754
No 173
>KOG4005|consensus
Probab=44.64 E-value=51 Score=25.53 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
.|..+..++|.++.+..++-+.|+.+.|.+|-.
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888888877754
No 174
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=44.53 E-value=87 Score=20.86 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=4.3
Q ss_pred cccHHHHHHHH
Q psy14736 4 VHTVDEMQSIL 14 (85)
Q Consensus 4 ~~~~~~lq~~l 14 (85)
+|++.+++..+
T Consensus 26 l~~~~~~~~~~ 36 (150)
T PF07200_consen 26 LPQVQELQQER 36 (150)
T ss_dssp GS--HHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34445554444
No 175
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=44.01 E-value=91 Score=22.42 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
+......|..+.+++..+.+.|.+++..|+.-++.
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455554444444444444444443
No 176
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=43.39 E-value=71 Score=27.50 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
++.+..|+.|..+|..+|+.+..|..++..||.
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888888765554
No 177
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=43.23 E-value=51 Score=22.03 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhHhhhhc
Q psy14736 17 KESKIRELEEKV--KVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 17 kd~~I~~Le~~l--~ekd~eI~eL~~~ldK~rs 47 (85)
-++.+.++.++| ...|..|++++.+||.|..
T Consensus 99 ~e~~~~~~~~kLk~AGidkV~~E~QkQlda~~~ 131 (134)
T PF12010_consen 99 PEEALPEFNEKLKAAGIDKVIAELQKQLDAFLA 131 (134)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 345566666665 4589999999999999863
No 178
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.96 E-value=87 Score=19.90 Aligned_cols=40 Identities=10% Similarity=0.326 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
++|...+++....|..+...+...+..+.++..-++.+..
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~ 41 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLET 41 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677777777766666666555544444333
No 179
>PRK12704 phosphodiesterase; Provisional
Probab=42.72 E-value=92 Score=25.70 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHh
Q psy14736 22 RELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~~ld 43 (85)
+..+.+|..+++.+..+..+|+
T Consensus 106 ekke~eL~~re~~Le~re~eLe 127 (520)
T PRK12704 106 EKREEELEKKEKELEQKQQELE 127 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 180
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=42.68 E-value=92 Score=20.10 Aligned_cols=41 Identities=12% Similarity=0.350 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
+.|...+++.+..+..|...+...+..|.++..-++-+..+
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l 42 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDL 42 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677777777788877777777777777666655443
No 181
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=42.66 E-value=84 Score=22.15 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+........+...|......|..|+.+|+.++..+
T Consensus 145 ~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 145 RNLKTDVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred HHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 35555666666667777777777777777776544
No 182
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=42.62 E-value=98 Score=20.40 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
...-..|.+|...+.+.-+|-..|+-+-+++|..+
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433
No 183
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=42.49 E-value=96 Score=24.18 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY 51 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~ 51 (85)
..|...+......++.|+..+.+...++..++.+++++++-+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEK 47 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777889999999999999999999999999988853
No 184
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=42.30 E-value=1e+02 Score=24.82 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 7 VDEMQSILQAKE-------SKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 7 ~~~lq~~l~~kd-------~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..++...+..-. ..+.+++.++.+.+.+|..|+.+|..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355555554333 3445555666666666666666665554
No 185
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=42.16 E-value=93 Score=20.01 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+..++.++.+.+.....|...++++++
T Consensus 87 ~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (116)
T cd04769 87 KKQEIRAQITELQQLLARLDAFEASLKD 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444444444444444443
No 186
>PRK01203 prefoldin subunit alpha; Provisional
Probab=42.10 E-value=1.1e+02 Score=20.98 Aligned_cols=41 Identities=12% Similarity=0.283 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+|+...++-.++.|+.|..++......+.++..-++-+..
T Consensus 2 ~~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 2 ARDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36788888888889999999999888888888887777766
No 187
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=41.68 E-value=1.1e+02 Score=20.63 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..-+.++.+++..+.+|.+|..++++.+
T Consensus 105 ~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 105 KKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3356677888888888888888888764
No 188
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=41.57 E-value=64 Score=21.38 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14736 19 SKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~ 39 (85)
+.|..|+.+|+..+..|.+|.
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555554443
No 189
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=41.46 E-value=1.2e+02 Score=21.15 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+.|.++||....|-..|..-|.|=+.
T Consensus 36 ~eaL~~ELDsL~~EkvhLeeilnkKqe 62 (134)
T PF15233_consen 36 WEALQRELDSLNGEKVHLEEILNKKQE 62 (134)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344455555555555555554444443
No 190
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=41.31 E-value=1e+02 Score=20.29 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
..|..-+......+.+|..+.....-|...|+..|++..+
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666777888999999999999999999999999877
No 191
>PRK14160 heat shock protein GrpE; Provisional
Probab=41.17 E-value=1.1e+02 Score=22.54 Aligned_cols=37 Identities=8% Similarity=0.294 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
++..+...+..+..|+.++.+..+....++.+.+-||
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~R 95 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYR 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555544
No 192
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=40.97 E-value=62 Score=23.92 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~ 40 (85)
+|+..++.+...+...+.+|..+.+++..|+.
T Consensus 56 ~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLre 87 (202)
T PF06818_consen 56 ELQDSLRTKQLELEVCENELQRKKNEAELLRE 87 (202)
T ss_pred HHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhh
Confidence 33444444444444444444444444433333
No 193
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=40.92 E-value=1.2e+02 Score=23.50 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+...+.+++.++.+.+..|.....++..++
T Consensus 223 ~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 223 KVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433333
No 194
>PRK00106 hypothetical protein; Provisional
Probab=40.74 E-value=1e+02 Score=25.86 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHhH
Q psy14736 28 VKVQNEEIVQLRSHL 42 (85)
Q Consensus 28 l~ekd~eI~eL~~~l 42 (85)
|..+.+++.++..++
T Consensus 134 Le~reeeLee~~~~~ 148 (535)
T PRK00106 134 LTDKSKHIDEREEQV 148 (535)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 195
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=40.67 E-value=63 Score=20.36 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCC
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYH 52 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~ 52 (85)
.+.+|+.+|+.....+..|.+.+...++++-+-
T Consensus 36 ~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~~~ 68 (75)
T PF05531_consen 36 DVTELNKKLDAQSAQLTTLNTKVNEIQDILNPD 68 (75)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 456688899999999999999999999998643
No 196
>KOG0570|consensus
Probab=40.63 E-value=60 Score=24.39 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
|.+++.|--+|.++.++...+..++.++...+.++
T Consensus 129 QaResLi~lmE~Qi~~~~~~ve~~kk~~~~~~e~l 163 (223)
T KOG0570|consen 129 QARESLIMLMERQIEQRSDIVEDFKKHLRQVREVL 163 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999998888876555554
No 197
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.52 E-value=1.2e+02 Score=20.69 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
..+-+|..|++.-...+..+.+|+++|
T Consensus 81 ~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 81 TLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555544
No 198
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=40.35 E-value=39 Score=21.74 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
..-...+..|..++.+...+|..|+.+|+.|++
T Consensus 28 ~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~ 60 (131)
T PF05103_consen 28 DELAEELERLQRENAELKEEIEELQAQLEELRE 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 333444555555555555555555555555544
No 199
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=40.13 E-value=1.1e+02 Score=25.24 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 22 RELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
...+..|..++..+..+..+|++
T Consensus 100 ekre~~Le~ke~~L~~re~eLee 122 (514)
T TIGR03319 100 DKKEENLEKKEKELSNKEKNLDE 122 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 200
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=39.92 E-value=1e+02 Score=19.79 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
...|...+++|...+..+..|++...++
T Consensus 7 ~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 7 QAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666554
No 201
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=39.80 E-value=1.3e+02 Score=21.75 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
......+..+++.++.--.+|..++.+|+++.+.
T Consensus 34 ~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~ 67 (240)
T PF12795_consen 34 KKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ 67 (240)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 4677789999999999999999999999999775
No 202
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=39.23 E-value=1.1e+02 Score=20.16 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 22 RELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
.-|+.++.+.++.|.+|+..++.+
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l 105 (133)
T cd04787 82 RLIEQRLAETERRIKELLKLRDRM 105 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333
No 203
>KOG4196|consensus
Probab=38.69 E-value=72 Score=22.30 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
..-..|..+++..-.++..++-++|-|++++.
T Consensus 81 ~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 81 KEKAELQQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777777888888888888763
No 204
>KOG3088|consensus
Probab=38.39 E-value=94 Score=24.52 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+..++..+.+-++||+.|++|+.....++-..-.
T Consensus 61 ~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~ 95 (313)
T KOG3088|consen 61 DLAKKQAELLKKQEELRRKEQELDRRERALARAGI 95 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccC
Confidence 44577888889999999999999999988887533
No 205
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.34 E-value=55 Score=18.81 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14736 20 KIRELEEKVKVQNEEIVQL 38 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL 38 (85)
.++.+++++...+.++++|
T Consensus 49 ~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444443
No 206
>KOG4643|consensus
Probab=38.34 E-value=89 Score=28.68 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
|++.+..|-+...+|+.+|+.++++|..|+-+.--|.
T Consensus 189 LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l 225 (1195)
T KOG4643|consen 189 LRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFL 225 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555554444443
No 207
>KOG1029|consensus
Probab=38.22 E-value=94 Score=28.03 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
...|..+.+.++..+..++..+++...|+....+++|-|
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~ 568 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIF 568 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 355666666666666666666666555555444444443
No 208
>PRK14140 heat shock protein GrpE; Provisional
Probab=38.16 E-value=1.1e+02 Score=22.28 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+..|.++++++++..+....++.+++.|+
T Consensus 43 ~~~i~~l~~ei~elkd~~lR~~Ae~eN~r 71 (191)
T PRK14140 43 QAKIAELEAKLDELEERYLRLQADFENYK 71 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555444
No 209
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.93 E-value=1.1e+02 Score=20.31 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
...-+.+|+-++.++...+.....|+..+.+.++-+
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555554433
No 210
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=37.80 E-value=87 Score=18.42 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
+..|..|++++...+.+|..+...|.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44566677777766666666666653
No 211
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=37.72 E-value=70 Score=19.56 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhHhhhhc
Q psy14736 21 IRELEEKVKVQN-EEIVQLRSHLDKFQS 47 (85)
Q Consensus 21 I~~Le~~l~ekd-~eI~eL~~~ldK~rs 47 (85)
.++|.++|+..= .--..|-.+||.|.+
T Consensus 42 ~EeLDaELD~Ym~~~~~~LD~~Ld~Y~~ 69 (74)
T PF13865_consen 42 AEELDAELDAYMSKTKSKLDAELDSYMS 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667776654 334578888888876
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.65 E-value=1.2e+02 Score=22.50 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
+|+.|+.++++....|+++.-+|+.
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444444444444444444443
No 213
>PRK12704 phosphodiesterase; Provisional
Probab=37.63 E-value=1.3e+02 Score=24.86 Aligned_cols=28 Identities=14% Similarity=0.389 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
.++..|...++.|..+.+++.++..+++
T Consensus 107 kke~eL~~re~~Le~re~eLe~~~~~~~ 134 (520)
T PRK12704 107 KREEELEKKEKELEQKQQELEKKEEELE 134 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 214
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=37.49 E-value=1.2e+02 Score=21.13 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.+|..+|......+++++.++++.+.++..+...+...-
T Consensus 42 ~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (151)
T PF14584_consen 42 KNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCV 80 (151)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356666777777788888888888888888887766543
No 215
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=37.21 E-value=82 Score=19.09 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
++-|...|.+..+.+.+|..+-.-+++..++.+
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe~ 48 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQNASPEQ 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 444555555555555555555555566555543
No 216
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=37.18 E-value=1.1e+02 Score=19.46 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..+.-|+..+.+.+.+|.+|+..++.+.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (113)
T cd01109 79 ERLELLEEHREELEEQIAELQETLAYLD 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666665555443
No 217
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=37.10 E-value=58 Score=16.18 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhHhhh
Q psy14736 30 VQNEEIVQLRSHLDKF 45 (85)
Q Consensus 30 ekd~eI~eL~~~ldK~ 45 (85)
..-..|..|.++|+.+
T Consensus 5 rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 5 RLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 218
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.01 E-value=1.1e+02 Score=23.37 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQN----EEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd----~eI~eL~~~ldK~rsv~ 49 (85)
+.+|+.+.+....|+.+++.++.-. ..-..+.++|+|++-..
T Consensus 60 ~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 60 RSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
Confidence 5566666777778888888887666 55556777888887655
No 219
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=36.87 E-value=95 Score=18.60 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
..+++|.-|+.++...+.+|.......+-
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~A 53 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRAA 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777776666655443
No 220
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=36.70 E-value=61 Score=21.70 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
|++++.++...-....+|+.++|-|+--.
T Consensus 47 ~~ege~~~qkL~eqteeLK~kvqe~sk~i 75 (106)
T PF12443_consen 47 IREGEQMIQKLGEQTEELKDKVQEFSKRI 75 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55666666666666666777777766544
No 221
>KOG4603|consensus
Probab=36.54 E-value=1.1e+02 Score=22.50 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
..|..|..|+..+..+..++.....+|
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEi 109 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEI 109 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333333
No 222
>KOG0963|consensus
Probab=36.26 E-value=1e+02 Score=26.58 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
.-...|..|++++..+..+|.+|+++|..|
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445668888888888888888888888765
No 223
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=36.07 E-value=1.7e+02 Score=22.51 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
....+++.+.+..++.+.....+||+++.+-.+..
T Consensus 106 ~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~ 140 (314)
T PF04111_consen 106 LELIEFQEERDSLKNQYEYASNQLDRLRKTNVYND 140 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhc
Confidence 33444455556666666777778888887665554
No 224
>KOG4643|consensus
Probab=36.01 E-value=1.2e+02 Score=27.98 Aligned_cols=39 Identities=28% Similarity=0.466 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..|...|-..++.|+.|+.++.||-+...+|+++||-+.
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddle 211 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLE 211 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677888899999988888776666666665544
No 225
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=35.91 E-value=1.1e+02 Score=20.27 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
+-+..|..++.++...-++-..+=..|++|-+|+-
T Consensus 56 ~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 56 QVEKEIRELQNQLGLYLDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55666777777766666666666667788888875
No 226
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=35.89 E-value=1e+02 Score=25.59 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
++.+++.+++|.++++++.+.++++.++..+
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~ 244 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKK 244 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666655543
No 227
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression. MukE (IPR007385 from INTERPRO) along with MukF interact with MukB (IPR007406 from INTERPRO) in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. ; GO: 0005509 calcium ion binding, 0006260 DNA replication, 0007059 chromosome segregation, 0005737 cytoplasm; PDB: 1T98_B 3RPU_X 3EUH_B 3EUK_J 3EUJ_B.
Probab=35.83 E-value=1e+02 Score=25.33 Aligned_cols=43 Identities=28% Similarity=0.489 Sum_probs=27.0
Q ss_pred CccccHHHHHHHHHH----HHHHHHHHHHH------HHHHHHHHHHHHHhHhhhhc
Q psy14736 2 GTVHTVDEMQSILQA----KESKIRELEEK------VKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 2 ~~~~~~~~lq~~l~~----kd~~I~~Le~~------l~ekd~eI~eL~~~ldK~rs 47 (85)
||+ +|||.+|.. ....+...+.. +..-++.+..|+.+||...|
T Consensus 213 gtL---RELqdtL~aagd~lqa~Ll~IQe~~~~~~~l~~v~~l~~~Lq~kLDrI~s 265 (440)
T PF03882_consen 213 GTL---RELQDTLEAAGDKLQAQLLRIQEAVMGRDELEFVDNLIFDLQMKLDRIIS 265 (440)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhH---HHHHHHHHHhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 455 999999852 22223333332 24568888899999998665
No 228
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=35.51 E-value=1.4e+02 Score=24.62 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
.++..+...++.|..+..++.++..+++
T Consensus 101 kre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 101 KKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 229
>PRK14159 heat shock protein GrpE; Provisional
Probab=35.31 E-value=86 Score=22.44 Aligned_cols=31 Identities=3% Similarity=0.247 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
-|..|.++++++.+..+....++.+++.|+-
T Consensus 28 ~~~~i~~l~~e~~elkd~~lR~~AdfeN~rk 58 (176)
T PRK14159 28 EDVEQNKLQKDYDELKDKYMRANAEFENIKK 58 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777766666653
No 230
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=35.31 E-value=1e+02 Score=18.41 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
|..|+..+......+.+|+..++++.
T Consensus 60 I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 60 ISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444444443
No 231
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=35.19 E-value=72 Score=24.26 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+..||.+|.+.|-.|..+++.++++++-+
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~ 45 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQSRL 45 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777888888888888754
No 232
>KOG0804|consensus
Probab=35.16 E-value=1.2e+02 Score=25.35 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+..+..+.+...+..+|+.|..|+++|.-+.
T Consensus 418 kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 418 KLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 4555666777788899999999999986554
No 233
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=35.10 E-value=1.2e+02 Score=19.28 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14736 20 KIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~ 39 (85)
.+..||.-....|+-..+|-
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE 93 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELE 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334433333333333333
No 234
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=35.01 E-value=1.4e+02 Score=19.99 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
.+|...++.++..|.++...++.-+..+.++...
T Consensus 45 ~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~ 78 (106)
T PF11594_consen 45 NELKEELQRKEQLLQKHYEKIDYWEKLLSDAQNQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777888888888888888888776666643
No 235
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=34.89 E-value=1.5e+02 Score=20.37 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
.....|+.|..-+......|..|...+|-
T Consensus 101 ~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~ 129 (146)
T PF08702_consen 101 NQPSNIRVLQNILRSNRQKIQRLEQDIDQ 129 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666655544
No 236
>PRK14011 prefoldin subunit alpha; Provisional
Probab=34.51 E-value=1.6e+02 Score=20.40 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
..=+...+..++.|...|.++..++.++..+|++-
T Consensus 94 ~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k 128 (144)
T PRK14011 94 KKSVEELDKTKKEGNKKIEELNKEITKLRKELEKR 128 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556667777788888888888887776543
No 237
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=34.50 E-value=50 Score=27.19 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 23 ELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 23 ~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.|+++|+++-+.+.-++.-.||||
T Consensus 422 ~LQkEIedLreQLaamqsl~~kfq 445 (445)
T PF15483_consen 422 VLQKEIEDLREQLAAMQSLADKFQ 445 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 577888888888888888888886
No 238
>KOG4674|consensus
Probab=34.41 E-value=1.2e+02 Score=29.28 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..++..+....+.|..|++.+.+....|..|-+++|.|+
T Consensus 568 ~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~ 606 (1822)
T KOG4674|consen 568 NILKETINEASEKIAELEKELEEQEQRIESLLTERDMYK 606 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555678889999999999999999999999999995
No 239
>PRK14147 heat shock protein GrpE; Provisional
Probab=34.37 E-value=94 Score=22.04 Aligned_cols=27 Identities=11% Similarity=0.366 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.|.+|++++++..+....+..+++.|+
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~r 52 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQR 52 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444554444
No 240
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=34.37 E-value=1.3e+02 Score=21.71 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+.+|.++--.|.+|..++.+.+..+.+|..+..-++.
T Consensus 4 ~rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 4 QRVLSARLHKIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888888888888887776544443
No 241
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=34.31 E-value=97 Score=19.80 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..|-.|-.++.....++..|++.|..|-
T Consensus 71 alvl~LLd~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 71 AVALTLLDEIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888889999998887774
No 242
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=34.05 E-value=93 Score=19.61 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
..|.+|+++....+.+|.++..++
T Consensus 7 ~~~~~L~~~~~~l~~~i~~~~~~l 30 (83)
T PF07061_consen 7 AEIQELKEQIEQLEKEISELEAEL 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555555555555555543
No 243
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=34.03 E-value=1.4e+02 Score=22.77 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
|+..=.+.+..+..|+.+++..++.|...+.+|.-+.
T Consensus 72 Lqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 72 LQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333346677788999999999999998888875443
No 244
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.79 E-value=1.6e+02 Score=20.15 Aligned_cols=34 Identities=32% Similarity=0.560 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIV-------QLRSHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~-------eL~~~ldK~rsv~ 49 (85)
.-+..+..++.+...++.+|. .|..+||++..-+
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554 4455566655433
No 245
>KOG1853|consensus
Probab=33.68 E-value=1.5e+02 Score=23.34 Aligned_cols=45 Identities=9% Similarity=0.186 Sum_probs=32.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHhhhhccC
Q psy14736 5 HTVDEMQSILQAKESKIRELEEKVKVQNEEI---VQLRSHLDKFQSVF 49 (85)
Q Consensus 5 ~~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI---~eL~~~ldK~rsv~ 49 (85)
-++.||..-|.+--+++.-||.+|++++..+ +.|+.+-.-+|.-+
T Consensus 133 ~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqel 180 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQEL 180 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888889999999999999755 45555544444443
No 246
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=33.26 E-value=1.3e+02 Score=19.15 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 6 TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 6 ~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
|+-|+...|..=...|+.||.++..--=.+-.|++-|-|=+
T Consensus 27 svgd~e~eLerCK~sirrLeqevnkERFrmiYLQTlLAkEr 67 (79)
T PF09036_consen 27 SVGDIEQELERCKASIRRLEQEVNKERFRMIYLQTLLAKER 67 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788888888888899999998877666777887776633
No 247
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=33.24 E-value=36 Score=21.91 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
......+..|..++.+....+..++...+.++..+
T Consensus 35 ~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 35 ERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 33334444444444444444444444444444433
No 248
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=33.00 E-value=82 Score=24.00 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
..++.|+.++.+...++..++.++.+|++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIE 37 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777776663
No 249
>PF11050 Viral_env_E26: Virus envelope protein E26; InterPro: IPR021286 DA26 (E26) is a multifunctional protein. One form of E26 associates with viral DNA or DNA binding proteins, while a second form associates with intracellular membranes [].
Probab=32.98 E-value=76 Score=23.53 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
+-....++.|++.|.-|++.|+.|-.+|+.-+-+
T Consensus 65 qlqkKrvRnmQ~LlRKKN~iIA~Laa~L~~~q~~ 98 (206)
T PF11050_consen 65 QLQKKRVRNMQRLLRKKNNIIANLAAQLESQQKK 98 (206)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 4556678888899999999999888888876664
No 250
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=32.97 E-value=42 Score=23.40 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHhhhhcc
Q psy14736 30 VQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 30 ekd~eI~eL~~~ldK~rsv 48 (85)
.-|.+|..|+.+|+.++.|
T Consensus 110 ~ID~eIe~Lq~Ki~~LKei 128 (145)
T PF12548_consen 110 HIDHEIETLQDKIKNLKEI 128 (145)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666654
No 251
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.83 E-value=1.1e+02 Score=22.57 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
..+...|.+|..-+.+....+.+|+.++.+|...+.
T Consensus 154 ~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 154 SERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888888888888876653
No 252
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=32.77 E-value=1.7e+02 Score=20.15 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
..|..++..+.+.-.....+..++..-|.+++..+..|
T Consensus 31 ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~ 68 (135)
T PRK10947 31 EKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIAD 68 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555667777777777788888888888887777665
No 253
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.67 E-value=1.4e+02 Score=24.13 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~ 40 (85)
.++...++..+..+++++++|...+.++..|..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 141 ERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445555567777788888888888877777765
No 254
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.64 E-value=1.5e+02 Score=19.71 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY 51 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~ 51 (85)
..|..-+...-..+..|...+.+.-+|-..|+-+-+++|..+..
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666678888888888889999999999999998864
No 255
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=32.63 E-value=1.7e+02 Score=20.18 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
.-|..+++..+..+.+..++..+...+|.+....+-+|+.++.
T Consensus 18 e~lee~~ek~eq~~~~r~~e~~~~~~~i~e~~~~~~~~~e~~~ 60 (128)
T COG2916 18 ELLEEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELLI 60 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666667777777778888888887777663
No 256
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=32.37 E-value=1.3e+02 Score=20.25 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy14736 22 RELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~~ 41 (85)
.+|..+++..+..++.|.++
T Consensus 86 ~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 86 DELTERVDALERQVADLENK 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 257
>KOG0995|consensus
Probab=32.35 E-value=1.7e+02 Score=24.99 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhh
Q psy14736 24 LEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 24 Le~~l~ekd~eI~eL~~~ldK 44 (85)
+++.|.....||.+.-+++.+
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~ 312 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEK 312 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 258
>PF07097 DUF1359: Protein of unknown function (DUF1359); InterPro: IPR010772 This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
Probab=32.35 E-value=1.4e+02 Score=19.66 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------HhhhhccCCCCC
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSH-------LDKFQSVFPYHN 53 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~-------ldK~rsv~~~~~ 53 (85)
.++|+..+..++...+.|-..+.+ +|+|+|.--+.+
T Consensus 8 ~~~I~~~q~K~~RLk~~IH~vr~Q~~~~~i~~D~~k~~~i~~~ 50 (102)
T PF07097_consen 8 SEQIAKIQTKICRLKNVIHAVRRQTELVKIVLDDLKNNHIKKD 50 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCc
Confidence 356788888888888888877777 899998765544
No 259
>KOG1760|consensus
Probab=32.24 E-value=1.8e+02 Score=20.28 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=20.1
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 8 DEMQSILQ----AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 8 ~~lq~~l~----~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
.+++.-|. ..+..|..|+.++..-+..+.+|+..|
T Consensus 80 ~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 80 DKLQDQLEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 333446666666666666666666555
No 260
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=32.12 E-value=2.1e+02 Score=21.60 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
..+..++.++.++...+.+|++++..+++-+.-
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555554443
No 261
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=32.08 E-value=1.6e+02 Score=21.96 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+....|..|+++..+..+...+|+..|
T Consensus 226 ~~~~~l~~l~~E~~~I~~re~elq~~l 252 (254)
T PF15458_consen 226 QLQQQLESLEKEKEEIEEREKELQELL 252 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445444444444444444443
No 262
>PRK14151 heat shock protein GrpE; Provisional
Probab=32.01 E-value=1.1e+02 Score=21.84 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
|.+|++++++..+....+.-+.+.|
T Consensus 29 i~~le~e~~el~d~~lR~~Ae~eN~ 53 (176)
T PRK14151 29 VQELEEQLAAAKDQSLRAAADLQNV 53 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443344333333
No 263
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=31.91 E-value=1.3e+02 Score=19.76 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
++.|++.+...+..|..+..++.
T Consensus 10 ~~~L~~~~~~le~~i~~~~~~~k 32 (171)
T PF03357_consen 10 IRRLEKQIKRLEKKIKKLEKKAK 32 (171)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333
No 264
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=31.73 E-value=1.1e+02 Score=20.53 Aligned_cols=8 Identities=38% Similarity=0.841 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy14736 21 IRELEEKV 28 (85)
Q Consensus 21 I~~Le~~l 28 (85)
|++||.+|
T Consensus 9 IkdLesel 16 (111)
T PF12001_consen 9 IKDLESEL 16 (111)
T ss_pred HHHHHHHH
Confidence 33333333
No 265
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.73 E-value=1.6e+02 Score=22.46 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
++.+...-+.|.+|+.++....+++..|+...-
T Consensus 192 ~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 192 QKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333345555566666666666666666665543
No 266
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=31.44 E-value=1.7e+02 Score=24.35 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..-.+.+.++.+++.+.++++.+++.+++.++
T Consensus 96 ~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 96 EKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555666666666666666665555443
No 267
>PHA03395 p10 fibrous body protein; Provisional
Probab=31.07 E-value=1.5e+02 Score=19.20 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCCCCC
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSP 57 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~~~~~ 57 (85)
+.+|...|+...+-+..+.+.++...+++-+--+..|
T Consensus 37 v~~l~~kLdaq~~~Ltti~tkv~~I~diLnpdiPdlP 73 (87)
T PHA03395 37 VTEINEKLDAQSASLDTISSAVDNITDILNPDIPDVP 73 (87)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHccCCCCCCCC
Confidence 4577778999999999999999999999965444333
No 268
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=30.73 E-value=97 Score=16.95 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14736 22 RELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~ 40 (85)
-++|+.+++..+-|.+|..
T Consensus 18 ~R~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 18 VRIEKKLDELTESINELSE 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666654
No 269
>PRK14143 heat shock protein GrpE; Provisional
Probab=30.57 E-value=1.5e+02 Score=22.22 Aligned_cols=29 Identities=17% Similarity=0.504 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+..|..|++++.+..+....+.-+++.||
T Consensus 73 ~~el~~l~~e~~elkd~~lR~~AdfeN~R 101 (238)
T PRK14143 73 EQELESLKQELEELNSQYMRIAADFDNFR 101 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555444444444444444443
No 270
>PF14282 FlxA: FlxA-like protein
Probab=30.52 E-value=1.5e+02 Score=19.20 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
.+...+..|+.+|...+..|..|+.+.-+-
T Consensus 48 ~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 48 QKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777666544
No 271
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=30.34 E-value=1.7e+02 Score=19.62 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
|...++.....-....+.+.+.+..|.++...++.+
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555555555555555555543
No 272
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=30.29 E-value=1.3e+02 Score=18.35 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
-.++.|.--..-.+--+.-|+.|...+.+|
T Consensus 76 l~deKv~lA~~~~d~v~~hi~rLD~dl~~f 105 (105)
T PF12998_consen 76 LSDEKVALAQQAYDLVDRHIRRLDQDLKKF 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444444444444444455555444443
No 273
>PRK14139 heat shock protein GrpE; Provisional
Probab=30.24 E-value=1.5e+02 Score=21.33 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.|.+|++++.+..+....+.-+.+.|+
T Consensus 40 ~l~~le~e~~elkd~~lR~~AefeN~r 66 (185)
T PRK14139 40 ELAEAEAKAAELQDSFLRAKAETENVR 66 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 274
>PRK14141 heat shock protein GrpE; Provisional
Probab=30.20 E-value=1.1e+02 Score=22.45 Aligned_cols=22 Identities=9% Similarity=0.317 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHh
Q psy14736 22 RELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~~ld 43 (85)
..|++++.+..+....++.+++
T Consensus 41 ~~le~e~~elkd~~lR~~Ae~e 62 (209)
T PRK14141 41 EALKAENAELKDRMLRLAAEME 62 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 275
>PHA03161 hypothetical protein; Provisional
Probab=30.20 E-value=2e+02 Score=20.37 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKV 28 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l 28 (85)
.+++..+..-+..|++.++++
T Consensus 57 ~~i~~~v~~l~~~I~~k~kE~ 77 (150)
T PHA03161 57 KSIEGMLQAVDLSIQEKKKEL 77 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 276
>PRK00106 hypothetical protein; Provisional
Probab=30.01 E-value=2e+02 Score=24.15 Aligned_cols=30 Identities=13% Similarity=0.374 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
++..++..+..|..++..+..+..+|++..
T Consensus 116 Ree~LekrE~eLe~kekeLe~reeeLee~~ 145 (535)
T PRK00106 116 KDENLSSKEKTLESKEQSLTDKSKHIDERE 145 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444445554443
No 277
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.99 E-value=1.2e+02 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
..+..+..+..+..|++++-+.|..||+
T Consensus 145 ~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 145 CLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 3344444444444555555555544443
No 278
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.72 E-value=1.9e+02 Score=21.13 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhHhhhhccC
Q psy14736 17 KESKIRELEEKVKVQNEEIV---QLRSHLDKFQSVF 49 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~---eL~~~ldK~rsv~ 49 (85)
..++.++|++++.+...++. +++.+.+.++..+
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 74 LREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555554444 4455555555544
No 279
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=29.61 E-value=1.9e+02 Score=21.61 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
+.....++.|..++...+.++..|+.+++
T Consensus 14 ~~~~~e~~~Lk~kir~le~~l~~Lk~~l~ 42 (236)
T PF12017_consen 14 RTLKIENKKLKKKIRRLEKELKKLKQKLE 42 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555553
No 280
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=29.52 E-value=91 Score=21.76 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
.|.+++..+...+..|+.+...|+
T Consensus 4 ~~~~~e~~~~~l~~~i~~~~~~l~ 27 (154)
T PF13015_consen 4 EIDEAERKLSDLESKIRELEDDLN 27 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666666555543
No 281
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.52 E-value=2.3e+02 Score=21.69 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 24 LEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 24 Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
|+..+..+-.|+...+.-|..+++|=
T Consensus 195 Le~KIekkk~ELER~qKRL~sLq~vR 220 (267)
T PF10234_consen 195 LEAKIEKKKQELERNQKRLQSLQSVR 220 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333444444444444444555544
No 282
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.20 E-value=2.4e+02 Score=20.94 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 25 EEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 25 e~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
...+..+.+++..|+.++|..|.-
T Consensus 80 ~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 80 QEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555666777777777766
No 283
>PF14182 YgaB: YgaB-like protein
Probab=29.18 E-value=1.5e+02 Score=18.91 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 24 LEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 24 Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
-++.+..-..+|...+.+|...+.||...+
T Consensus 38 ~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~QT 67 (79)
T PF14182_consen 38 REAELHSIQEEISQMKKELKEIQRVFEKQT 67 (79)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788899999999999999885443
No 284
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.06 E-value=2.2e+02 Score=20.31 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 25 EEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 25 e~~l~ekd~eI~eL~~~ldK~rs 47 (85)
-.++.+...++.+|+.+|.+|..
T Consensus 109 l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 109 LEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666677777776654
No 285
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=28.95 E-value=93 Score=20.65 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
|+.--+++...|.+|..|+-+|-++|||
T Consensus 6 KdMTqeelr~llseK~~ELydL~~eI~k 33 (100)
T PF10655_consen 6 KDMTQEELRDLLSEKNGELYDLANEIDK 33 (100)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 3444566777889999999999999998
No 286
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=28.90 E-value=1.2e+02 Score=17.50 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 10 MQSILQAKESKIRELEEKVKVQN 32 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd 32 (85)
.+..+..+..+|++++.....-|
T Consensus 29 ~~~n~~~K~~Li~~~~~l~~~~d 51 (77)
T PF03993_consen 29 REENLEKKEALIEEAEALAESED 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 34445577777777766655444
No 287
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.82 E-value=2.1e+02 Score=20.15 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
.+......+..|...+......|.+++.+.+-+
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 288
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=28.78 E-value=1.2e+02 Score=17.25 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
|-..+......+.+|...+.+.-.|+..|++-|-.
T Consensus 6 l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~e 40 (45)
T PF11598_consen 6 LIKQLSELNQMLQELKELLRQQIKETRFLRNTIME 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667888888888888899999876643
No 289
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=28.58 E-value=1.5e+02 Score=18.72 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
...-++..+.+.++.|.+|+..++.+..
T Consensus 72 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 99 (102)
T cd04775 72 VQAILEERLQSLNREIQRLRQQQQVLAA 99 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777766655544
No 290
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=28.51 E-value=1.8e+02 Score=24.62 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
++.+=..|+.|++........|.++..+|++++.-
T Consensus 372 In~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 372 INNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555678999999999999999999999999875
No 291
>PRK11415 hypothetical protein; Provisional
Probab=28.48 E-value=1.4e+02 Score=18.15 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 5 HTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 5 ~~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~ 39 (85)
|.-+|+-..|...|.....|-.+=.+.|.+|..+.
T Consensus 3 pe~~d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE 37 (74)
T PRK11415 3 PEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKE 37 (74)
T ss_pred chHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888888888888888888888776
No 292
>PRK10698 phage shock protein PspA; Provisional
Probab=28.42 E-value=1.3e+02 Score=21.98 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
-...+..|+.+++..+..+..|+..++++++-+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki 129 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKL 129 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777666666554
No 293
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=28.31 E-value=2e+02 Score=19.80 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCC
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYH 52 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~ 52 (85)
...+.......+.....|.+....+..|..+|..++..+-.+
T Consensus 45 ~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~r 86 (126)
T PF07028_consen 45 LEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLER 86 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444555556666666777777777777777777666433
No 294
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=28.12 E-value=87 Score=23.28 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+..|..++.+++..++++..++.++++.+.++
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 165 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQEA 165 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777788888888888888888888887766
No 295
>PRK14149 heat shock protein GrpE; Provisional
Probab=28.10 E-value=1.3e+02 Score=21.85 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
..++.|..|+.++.+..+....+..+++.|+-
T Consensus 40 ~~~~~~~~l~~e~~elkd~~lR~~AefEN~rK 71 (191)
T PRK14149 40 KEGEIKEDFELKYKEMHEKYLRVHADFENVKK 71 (191)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666656555555553
No 296
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.09 E-value=1.9e+02 Score=24.07 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 26 EKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 26 ~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+.+...++.|.+|..++..|+.-+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444566777778888888887665
No 297
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=28.05 E-value=1.7e+02 Score=20.41 Aligned_cols=42 Identities=21% Similarity=0.409 Sum_probs=25.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAK-ESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~k-d~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+...++... +.....|+..+.+.+++|.+|+.....+...+
T Consensus 62 ~eI~~ll~~~~~~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 62 EDIRSLLQQPGDDATDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555322 23345577777777777777777776666655
No 298
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.97 E-value=2e+02 Score=19.59 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+....+|+.|...+++..+.....++++-..+.
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 355566777777777777776666666655443
No 299
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=27.76 E-value=1.8e+02 Score=18.87 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
.|++|++++.+...|+.-|+..+
T Consensus 79 ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 79 QIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444443
No 300
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=27.74 E-value=1.5e+02 Score=21.85 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
.+++...+|.|+=+||.+.+.-.||
T Consensus 55 eLREVREELkEKmeEIKQIKdiMDK 79 (205)
T PF15079_consen 55 ELREVREELKEKMEEIKQIKDIMDK 79 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666666666666554443
No 301
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.68 E-value=2.3e+02 Score=23.66 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14736 19 SKIRELEEKVKVQNEEIV 36 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~ 36 (85)
..|.+++.++.....+|.
T Consensus 435 ~~l~~~~~~~~~~~~~~~ 452 (650)
T TIGR03185 435 NELFRSEAEIEELLRQLE 452 (650)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 302
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=27.66 E-value=1.4e+02 Score=23.56 Aligned_cols=28 Identities=18% Similarity=0.432 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+.|+++-++|.+.+.+++.|+.+|..+.
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566677777777777777777776544
No 303
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=27.48 E-value=1.2e+02 Score=21.56 Aligned_cols=24 Identities=8% Similarity=0.360 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQN 32 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd 32 (85)
.+...+..++..|.++++.+.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~ 33 (186)
T cd03777 10 RHDQMLSVHDIRLADMDLRFQVLE 33 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555444444
No 304
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=27.46 E-value=2e+02 Score=21.83 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+...|.+.+.....++.-+..++..|.+++...++|.++.
T Consensus 245 f~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~ 284 (342)
T cd08915 245 FEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVK 284 (342)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445567888889999999999999999999999997644
No 305
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=27.46 E-value=1.5e+02 Score=20.36 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 22 RELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
..+|..+......|+.|++-++.-++
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ 118 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQ 118 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHH
Confidence 66677777777777777766655444
No 306
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=27.41 E-value=2.4e+02 Score=20.25 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh
Q psy14736 24 LEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 24 Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
+...++.....|..|+.++..+
T Consensus 111 ~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 111 VEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 307
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.35 E-value=2e+02 Score=26.18 Aligned_cols=40 Identities=13% Similarity=0.283 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+|+..+......+.+++.++...+.++..+..++..++.
T Consensus 301 eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~ 340 (1311)
T TIGR00606 301 EQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQ 340 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777666666666666666666666655555555443
No 308
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=27.24 E-value=2e+02 Score=19.36 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhhccC
Q psy14736 9 EMQSILQAKESKIRELEEK--VKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~--l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
-|-..|...+..|..++.. ....-..+.+|+.+|.-+.+++
T Consensus 71 ALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 71 ALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777766 6677777888888887776655
No 309
>PRK14158 heat shock protein GrpE; Provisional
Probab=27.13 E-value=2.1e+02 Score=20.76 Aligned_cols=27 Identities=11% Similarity=0.315 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.+.+++.++.+..+....++.+.+.||
T Consensus 48 ~l~~le~e~~el~d~~lR~~AefeN~R 74 (194)
T PRK14158 48 ALAAKEAEAAANWDKYLRERADLENYR 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 310
>PRK11239 hypothetical protein; Provisional
Probab=27.02 E-value=1.3e+02 Score=22.61 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
..+.++..|+.++.+....+.+|..++.
T Consensus 187 ~Le~rv~~Le~eva~L~~~l~~l~~~~~ 214 (215)
T PRK11239 187 DLQARVEALEIEVAELKQRLDSLLAHLG 214 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999988764
No 311
>PRK01203 prefoldin subunit alpha; Provisional
Probab=26.99 E-value=1e+02 Score=21.20 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+.-++.+++....++..|+....+|..
T Consensus 8 ~~~~~~~q~e~l~~ql~~L~~a~se~~~ 35 (130)
T PRK01203 8 QLNYIESLISSVDSQIDSLNKTLSEVQQ 35 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555544
No 312
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=26.95 E-value=75 Score=22.00 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 23 ELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 23 ~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+|+.+++..++|+.++++++.+-++
T Consensus 70 Kl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 70 KLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777766666554
No 313
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=26.92 E-value=1.8e+02 Score=19.87 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
-|+..+.+++..+...|.++.+|.-+..+.-.-.
T Consensus 17 ~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~ 50 (131)
T PF11068_consen 17 WKEELLQELQEQIQQLDQELQQLEFQGKRMIKEI 50 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666555443
No 314
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=26.76 E-value=1.9e+02 Score=18.95 Aligned_cols=31 Identities=6% Similarity=0.175 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
...|..++++++...++...|..+++++++-
T Consensus 56 ~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 56 QRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344455555555555555555555555543
No 315
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.71 E-value=1.6e+02 Score=18.06 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.....|.+|..+.....++..+|+.+..+++
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444455555554444455555555555554
No 316
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=26.65 E-value=2.1e+02 Score=25.20 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
..|+..+..-+..|..+...++..+++|..|...|+
T Consensus 131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566667777777777777777777777664
No 317
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=26.59 E-value=2.4e+02 Score=23.52 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
++.++.++...+.++.++..+++.+
T Consensus 225 ~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 225 YEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 318
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=26.51 E-value=2.5e+02 Score=22.76 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhHhhhhcc
Q psy14736 29 KVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 29 ~ekd~eI~eL~~~ldK~rsv 48 (85)
.....++.++++++++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~ 103 (438)
T PTZ00361 84 KPAQEKNEAELKKVDDLRGS 103 (438)
T ss_pred hhHHHHHHHHHHHHHHhhCC
Confidence 45677888999999999975
No 319
>KOG2264|consensus
Probab=26.45 E-value=1.8e+02 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
...|++|.+.+-.+..++..|+.++.
T Consensus 113 n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 113 NTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 33344444444444444444444433
No 320
>COG0732 HsdS Restriction endonuclease S subunits [Defense mechanisms]
Probab=26.41 E-value=2.5e+02 Score=20.26 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
|...|..|+..++.+...++.+..+..++-...
T Consensus 152 L~~~d~~i~~~~~~i~~l~~~~~~~~~~~~~~~ 184 (391)
T COG0732 152 LSTLDDLIELLEKLIELLEAIKQKLFKELFTKG 184 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 468888888888888888888888777764443
No 321
>PRK14155 heat shock protein GrpE; Provisional
Probab=26.33 E-value=1.5e+02 Score=21.78 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy14736 10 MQSILQAKESKIREL 24 (85)
Q Consensus 10 lq~~l~~kd~~I~~L 24 (85)
+...|...+..+.++
T Consensus 18 l~~~l~~le~e~~el 32 (208)
T PRK14155 18 AAQEIEALKAEVAAL 32 (208)
T ss_pred hHHHHHHHHHHHHHH
Confidence 333333333333333
No 322
>PRK02224 chromosome segregation protein; Provisional
Probab=26.28 E-value=2.3e+02 Score=24.10 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+..++.++.+....+.++..+++++..
T Consensus 274 ~~~l~~~i~~~~~~~~~le~e~~~l~~ 300 (880)
T PRK02224 274 REELAEEVRDLRERLEELEEERDDLLA 300 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444
No 323
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.21 E-value=1.7e+02 Score=18.28 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
....+..++.+.+..+.++..+++.+-..+|
T Consensus 75 e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 75 EVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455555566666666666666666555554
No 324
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.19 E-value=2.7e+02 Score=20.49 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy14736 29 KVQNEEIVQL 38 (85)
Q Consensus 29 ~ekd~eI~eL 38 (85)
..++.+|.++
T Consensus 265 ~~le~el~~l 274 (312)
T PF00038_consen 265 AELEEELAEL 274 (312)
T ss_dssp HHHHHHHHHH
T ss_pred hccchhHHHH
Confidence 3333333333
No 325
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=26.12 E-value=52 Score=20.30 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhHhhhhccCCCC
Q psy14736 29 KVQNEEIVQLRSHLDKFQSVFPYH 52 (85)
Q Consensus 29 ~ekd~eI~eL~~~ldK~rsv~~~~ 52 (85)
..|...+.++++.+++|+.|+-..
T Consensus 4 ~~K~~~v~~~~~~l~~~~~v~v~~ 27 (100)
T PF00466_consen 4 EKKEEIVEELKELLKKSKYVIVVD 27 (100)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEE
Confidence 357778888888888888877443
No 326
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.10 E-value=2.1e+02 Score=24.18 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
...++.....|+++..++..|++.+.+|..++.+.-.
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445566777888888888999999999988887543
No 327
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=26.09 E-value=1.2e+02 Score=19.83 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
+.|..|+..|..++.+|..|..+|+
T Consensus 70 e~ie~L~~~l~~rE~e~~~Le~ele 94 (94)
T PF04576_consen 70 EAIESLKDILYKREKEIQSLEAELE 94 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4577778888888888888877664
No 328
>PTZ00421 coronin; Provisional
Probab=26.08 E-value=1.5e+02 Score=24.18 Aligned_cols=28 Identities=11% Similarity=0.310 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIV 36 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~ 36 (85)
.|-..|+...+.|..+.+.|.+|+.++-
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (493)
T PTZ00421 457 ALSEKLRTQHEEIKRCREALQKKESIVM 484 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555555554443
No 329
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=25.93 E-value=1.2e+02 Score=24.87 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
...-..+++..++..|.||..|+.|++==+++.
T Consensus 348 ~~~A~~~~~~~i~~LDrEI~~Lk~E~~lRk~l~ 380 (418)
T TIGR03755 348 NKPAQQEVDKAIDKLDREINNLKTELELRKELA 380 (418)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888999998888887655543
No 330
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.87 E-value=2.8e+02 Score=20.59 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
....|..+..++...-++|.+++.+
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555
No 331
>KOG3647|consensus
Probab=25.77 E-value=2.5e+02 Score=22.20 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCC
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY 51 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~ 51 (85)
+.-..|+..|..+-.|+..++.-|.+++||-|.
T Consensus 133 sdea~L~~Kierrk~ElEr~rkRle~LqsiRP~ 165 (338)
T KOG3647|consen 133 SDEAALGSKIERRKAELERTRKRLEALQSIRPA 165 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 345677788888888888888888888887643
No 332
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.74 E-value=1.5e+02 Score=22.22 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
..+..+..++.++.+....|..|-+-|-+.+..
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345567777788888888888888888777755
No 333
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=25.73 E-value=1.5e+02 Score=17.42 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~ 40 (85)
+--.+|+++..+|++.+..|..|-.
T Consensus 25 ~I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 25 QILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3345678888888888888877754
No 334
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=25.65 E-value=1.7e+02 Score=20.07 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
-...|..|+..+.++..++..|+.++..
T Consensus 65 vq~ei~~Le~kIs~q~~e~~dlkqeV~d 92 (120)
T COG4839 65 VQGEITDLESKISEQKTENDDLKQEVKD 92 (120)
T ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3445667777777777777777655544
No 335
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=25.65 E-value=1.4e+02 Score=23.55 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhHhhh
Q psy14736 27 KVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 27 ~l~ekd~eI~eL~~~ldK~ 45 (85)
++++--..|.+|+.+++.+
T Consensus 290 ElDe~~krL~ELrR~vr~L 308 (320)
T TIGR01834 290 ELDEAHQRIQQLRREVKSL 308 (320)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 336
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=25.59 E-value=1e+02 Score=19.87 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKVK 29 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ 29 (85)
.+-..+|+..|..|..||-+|.
T Consensus 69 ~kTh~aIq~LdKtIS~LEMELA 90 (95)
T PF13334_consen 69 SKTHEAIQSLDKTISSLEMELA 90 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554
No 337
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=25.49 E-value=1.5e+02 Score=18.75 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14736 10 MQSILQAKESKIRELEEKV 28 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l 28 (85)
+++...+.+..|..|+.+|
T Consensus 5 i~eEn~~Lk~eiqkle~EL 23 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAEL 23 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444333
No 338
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=25.49 E-value=68 Score=23.16 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ 41 (85)
|..||..+.+...++.+|+..
T Consensus 1 I~~LE~~~~~l~~e~~~Lk~~ 21 (176)
T PF10737_consen 1 IQRLEQRLQELQQELEELKQQ 21 (176)
T ss_pred ChHHHHHHHHHHHHHHHHHhC
Confidence 567888888888888888754
No 339
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=25.42 E-value=2.1e+02 Score=18.92 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=33.5
Q ss_pred CccccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 2 GTVHTVDEMQSIL-------QAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 2 ~~~~~~~~lq~~l-------~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
|++-...++..+| +-.+..|.-+..++|.-...|..|..+|+.-
T Consensus 44 g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~a 94 (99)
T PF13758_consen 44 GSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAA 94 (99)
T ss_pred cccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777776 5677788889999999999999888888653
No 340
>KOG4674|consensus
Probab=25.31 E-value=1.5e+02 Score=28.78 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.....|..|+.+|..+++.|++|...++.+|
T Consensus 1311 kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1311 KLKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556899999999999999999999999998
No 341
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=25.28 E-value=2.7e+02 Score=20.18 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhHh
Q psy14736 29 KVQNEEIVQLRSHLD 43 (85)
Q Consensus 29 ~ekd~eI~eL~~~ld 43 (85)
...+..|..|..+|+
T Consensus 200 ~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 200 KKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 342
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=25.26 E-value=2.7e+02 Score=23.92 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~ 39 (85)
..|+..++..+..|+.++.++...+..+..-.
T Consensus 89 erLraei~~l~~~I~~~e~e~~~~e~~~~q~~ 120 (632)
T PF14817_consen 89 ERLRAEIQELDKEIESREREVSRQEASREQML 120 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666667777777766666665443
No 343
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=25.12 E-value=2.3e+02 Score=20.95 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
..+..|+.+...+.-|...+...+.+|..|+..+..+
T Consensus 70 ~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 70 VCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 3444555555556666666666666666666666554
No 344
>PRK03918 chromosome segregation protein; Provisional
Probab=25.11 E-value=2.7e+02 Score=23.60 Aligned_cols=26 Identities=31% Similarity=0.601 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+..++..+.+.+.++.+|..++.+++
T Consensus 254 ~~~l~~~i~~l~~el~~l~~~l~~l~ 279 (880)
T PRK03918 254 KRKLEEKIRELEERIEELKKEIEELE 279 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444333
No 345
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=24.96 E-value=1.1e+02 Score=25.59 Aligned_cols=28 Identities=18% Similarity=0.468 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
....|+.|+++|.....++.+|+.+|--
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4457999999999999999999988754
No 346
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=24.83 E-value=2.4e+02 Score=21.70 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+...|.+.+.....++..+..++..+.+++..-++|.++.
T Consensus 242 F~~eL~kf~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~~~ 281 (339)
T cd09238 242 FKEELKKYDSVREAVSKNISSQDDLLSRLRALNEKFSQIF 281 (339)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456778888888899999999999999999999987644
No 347
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.78 E-value=2.1e+02 Score=20.33 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.+..|..|+.++.+....+.+|+.+++...
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666655555443
No 348
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.73 E-value=1.9e+02 Score=18.30 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=20.6
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 8 DEMQSILQAK--ESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 8 ~~lq~~l~~k--d~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.+...++... +....-++..+.+.+.+|.+|...++.+.
T Consensus 62 ~~i~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 102 (108)
T cd01107 62 EEIKEILDADNDDELRKLLREKLAELEAEIEELQRILRLLE 102 (108)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444322 23455556666666666666665555544
No 349
>PRK14148 heat shock protein GrpE; Provisional
Probab=24.56 E-value=2.8e+02 Score=20.19 Aligned_cols=27 Identities=19% Similarity=0.478 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.|..|+.++++..+....++.+.+.||
T Consensus 48 ~l~~l~~e~~elkd~~lR~~Ae~eN~r 74 (195)
T PRK14148 48 TIKELEDSCDQFKDEALRAKAEMENIR 74 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 350
>PRK14157 heat shock protein GrpE; Provisional
Probab=24.51 E-value=1.6e+02 Score=22.04 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.|..|++++.+..+.+..++-+.+.||
T Consensus 85 ~l~~le~e~~e~kd~llR~~AEfeNyR 111 (227)
T PRK14157 85 PLGQAKKEAAEYLEALQRERAEFINYR 111 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566555555555555555555
No 351
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=24.49 E-value=56 Score=22.56 Aligned_cols=22 Identities=14% Similarity=0.563 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhHhhhhccCCC
Q psy14736 30 VQNEEIVQLRSHLDKFQSVFPY 51 (85)
Q Consensus 30 ekd~eI~eL~~~ldK~rsv~~~ 51 (85)
.|.+.+.+|++.|++|.+|+-.
T Consensus 2 ~K~~~v~~l~e~l~~y~~v~iv 23 (163)
T cd05796 2 LKQKLVENIREAVDKYKYIYVF 23 (163)
T ss_pred hHHHHHHHHHHHHHhCCEEEEE
Confidence 4677888888888888887733
No 352
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=24.40 E-value=2.6e+02 Score=21.76 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
+....|.+++.-|.+....|.+|+.+++.++..+.
T Consensus 71 ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667888888888888888888888888886664
No 353
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=24.38 E-value=2.1e+02 Score=18.73 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
++..-+.|++.-...+++|..-+.+||.+..
T Consensus 67 r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 67 RKKEKEQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555556666666654
No 354
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.36 E-value=1.3e+02 Score=18.66 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy14736 16 AKESKIRELEEKV 28 (85)
Q Consensus 16 ~kd~~I~~Le~~l 28 (85)
..+++|+-||..|
T Consensus 53 rm~eRI~tLE~IL 65 (75)
T TIGR02976 53 RLEERIDTLERIL 65 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 355
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=24.36 E-value=68 Score=28.96 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
-.+++...||.+.-||+.|+.+|.+|+.--+
T Consensus 129 s~ddyRSVIDDLTve~kkLK~eLkrykq~g~ 159 (989)
T PF09421_consen 129 SADDYRSVIDDLTVENKKLKEELKRYKQRGP 159 (989)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhccCCc
Confidence 3456777888899999999999999987443
No 356
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=24.30 E-value=1.9e+02 Score=18.49 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
.+..+..+++++.+++..++..|.+
T Consensus 81 ~~~~~~~~l~~~~~~L~~l~~~L~~ 105 (107)
T cd01111 81 CLAQLRQKIEVRRAALNALTTQLAE 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666554
No 357
>KOG2114|consensus
Probab=24.25 E-value=1.8e+02 Score=26.25 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
...|+..+..|++-+..+...+++|.+++.+|.-++.
T Consensus 797 i~~l~~~~~~I~qd~~~Ie~yk~~i~e~r~~l~~lr~ 833 (933)
T KOG2114|consen 797 IKWLNKYSTIIEQDEDAIEVYKKDIEEKRQELETLRT 833 (933)
T ss_pred HHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455788888999999999999999999999887764
No 358
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=24.19 E-value=2e+02 Score=23.29 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
...+.+|+++++++..+|.+|.+-+
T Consensus 414 ~~e~~kL~~e~~~l~~ei~~l~~~l 438 (445)
T smart00434 414 KLEVEKLEKELKELEKEIEDLEKIL 438 (445)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666666666666666666443
No 359
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=24.03 E-value=2.4e+02 Score=19.17 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQL 38 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL 38 (85)
.+.++.+-++...+|++++.+++..|..+
T Consensus 91 Yk~llk~y~~~~~~L~k~I~~~e~iI~~f 119 (126)
T PF09403_consen 91 YKELLKKYKDLLNKLDKEIAEQEQIIDNF 119 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555443
No 360
>KOG2264|consensus
Probab=23.91 E-value=2.2e+02 Score=25.07 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+..+.|.++...+.+...+|...+.+|..+..++
T Consensus 104 el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQKQLELSALKGEI 137 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 3334444444444455555555555555555444
No 361
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=23.90 E-value=2.3e+02 Score=18.98 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
...+..+.-+.........|.+++.+|+.|++-.
T Consensus 70 ~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~ 103 (120)
T PF14931_consen 70 LLKSEAKQREAQQQQLQALIAEKKMELERLRSEY 103 (120)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566667777788888888888888887643
No 362
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=23.90 E-value=94 Score=23.48 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhHhhh
Q psy14736 27 KVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 27 ~l~ekd~eI~eL~~~ldK~ 45 (85)
++..+++|+..||.+|-++
T Consensus 123 KIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 123 KISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666654
No 363
>PTZ00421 coronin; Provisional
Probab=23.86 E-value=1.5e+02 Score=24.17 Aligned_cols=39 Identities=33% Similarity=0.541 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+.++-.+..++.+|-.+|....+||..+++.|.|-++.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (493)
T PTZ00421 445 EGILDERLGRLQALSEKLRTQHEEIKRCREALQKKESIV 483 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777888899999999999999999998876643
No 364
>KOG4010|consensus
Probab=23.82 E-value=3.1e+02 Score=20.41 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
++|...|-+-++.|--|..-|..|+.-..+|+..|
T Consensus 47 eelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 47 EELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555566666666666665555555443
No 365
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=23.78 E-value=2e+02 Score=24.54 Aligned_cols=31 Identities=26% Similarity=0.579 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..|..|..++..++++|..|++..|-++-.+
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3467777777777777777777777766443
No 366
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.76 E-value=2.5e+02 Score=22.12 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
+..+........+..|.+++.+....|.-|+..+-++++...
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~ 117 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE 117 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc
Confidence 333444567777888888888888888899998988887764
No 367
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.62 E-value=2.5e+02 Score=19.20 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
..+..+.+++.+..+++.+.+.+++..++
T Consensus 137 ~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 165 (191)
T PF04156_consen 137 ESIKELEKEIRELQKELQDSREEVQELRS 165 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444433
No 368
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.41 E-value=2.1e+02 Score=18.28 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
..-|+..+.+.+++|.+|+.....+
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l 105 (123)
T cd04770 81 RALLEEKLAEVEAKIAELQALRAEL 105 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444333
No 369
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.29 E-value=2e+02 Score=18.03 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
...-+++.+.+.+..|.+|+..++
T Consensus 82 ~~~~l~~~~~~l~~~i~~l~~~~~ 105 (107)
T cd04777 82 YKSFLKNKKDELEKEIEDLKKAIQ 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666777777777765554
No 370
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.26 E-value=2.1e+02 Score=18.22 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
..++.+|..+...+..+...+..++..+......|
T Consensus 10 ~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l 44 (126)
T PF13863_consen 10 FLVQLALDTKREEIERREEQLKQREEELEKKEQEL 44 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777666544444
No 371
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=23.26 E-value=2.8e+02 Score=23.05 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIV 36 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~ 36 (85)
...+++.|..|..+..++..+++.|+
T Consensus 230 ~q~i~qrd~~i~q~~q~iaar~e~I~ 255 (499)
T COG4372 230 AQAIQQRDAQISQKAQQIAARAEQIR 255 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444555555555555555555444
No 372
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=23.09 E-value=3.6e+02 Score=21.15 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCC
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY 51 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~ 51 (85)
...+.+++.+++..+.+|.++..-++.+-..++-
T Consensus 272 ~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~l 305 (406)
T PF02388_consen 272 KNKLKELEEQLASLEKRIEEAEELIAEYGDEIPL 305 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceE
Confidence 3456777777777777777777777776665433
No 373
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=23.02 E-value=2.1e+02 Score=23.24 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
-...+.+|+++++++.++|.+|.+.+
T Consensus 403 T~~e~~kL~~E~~~l~~ei~~l~~~l 428 (445)
T cd00187 403 TKLEREKLLKELKELEAEIEDLEKIL 428 (445)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777777777777777777665
No 374
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.97 E-value=1.7e+02 Score=21.02 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
.-++|..+|..-++||.-|+.-|
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL 52 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVL 52 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777666443
No 375
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=22.97 E-value=2e+02 Score=20.23 Aligned_cols=32 Identities=16% Similarity=0.468 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+.|..|...+......+..+-.+|..|+..+
T Consensus 109 ~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l 140 (184)
T PF05791_consen 109 KEIIEDLQDQIQKNQDKVQALINELNDFKDKL 140 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777644
No 376
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=22.97 E-value=2.8e+02 Score=19.98 Aligned_cols=43 Identities=16% Similarity=0.512 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+.+|...|......+..++..+...+..+..+.+-.+.++..+
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l 122 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQL 122 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 4566666665666666666666666666666655555555544
No 377
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=22.96 E-value=1.4e+02 Score=23.70 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
.-.+.+.+|.+++++++++|.+|++.+.+
T Consensus 388 LT~~e~~kL~~e~~~l~~ei~~l~~~~~~ 416 (426)
T PF00521_consen 388 LTKEEIEKLQKEIKELEKEIEELEKILPK 416 (426)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888888888888888888877765
No 378
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.68 E-value=3.1e+02 Score=20.02 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVK---VQNEEIVQLRSHLDK 44 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~---ekd~eI~eL~~~ldK 44 (85)
.++.........++.+|+.++. +..+|..+|+..|+-
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555555666666777766666 556677777776653
No 379
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.68 E-value=2.6e+02 Score=26.37 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhh
Q psy14736 24 LEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 24 Le~~l~ekd~eI~eL~~~ldK 44 (85)
++.++...+.++..|+.++..
T Consensus 381 leeEleelEeeLeeLqeqLae 401 (1486)
T PRK04863 381 NEARAEAAEEEVDELKSQLAD 401 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 380
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.65 E-value=3.2e+02 Score=23.19 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
+.+|+.+|++....|.++..+++.+
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l 354 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKML 354 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344443333333333333333
No 381
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.35 E-value=3.9e+02 Score=21.04 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 13 ILQAKESKIRELEE-------KVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 13 ~l~~kd~~I~~Le~-------~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
.|+-|+..+--||- .|...+.+|..++++|++.+.......
T Consensus 89 dlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 89 DLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 33455555555554 455666777777777777776654433
No 382
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.23 E-value=1.1e+02 Score=23.57 Aligned_cols=38 Identities=16% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
+.+++..|......+.+.+.+|.+.++.+..|+.+++.
T Consensus 223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 383
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=22.21 E-value=1.9e+02 Score=17.33 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 12 SILQAKESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 12 ~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
..+...+..|..++..+...+.++..++..
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~ 81 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQAREE 81 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555554444444444433
No 384
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=22.19 E-value=1.1e+02 Score=23.19 Aligned_cols=15 Identities=47% Similarity=0.705 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy14736 14 LQAKESKIRELEEKV 28 (85)
Q Consensus 14 l~~kd~~I~~Le~~l 28 (85)
|++.++.|++||.++
T Consensus 241 I~rEeeEIreLE~k~ 255 (259)
T PF08657_consen 241 IRREEEEIRELERKK 255 (259)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 385
>KOG3478|consensus
Probab=22.18 E-value=2.7e+02 Score=19.06 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
+..|..+|..+...+.+..+-++.+-+++..+.
T Consensus 82 ~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 82 SKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555555555555555555443
No 386
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=22.18 E-value=2.4e+02 Score=18.47 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy14736 24 LEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 24 Le~~l~ekd~eI~eL~~~ 41 (85)
|+..+.+.+..|.+|+..
T Consensus 84 l~~~~~~l~~~i~~L~~~ 101 (127)
T TIGR02047 84 LDEHISHVRARIIKLQAL 101 (127)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 387
>KOG0977|consensus
Probab=22.12 E-value=1.7e+02 Score=24.70 Aligned_cols=13 Identities=8% Similarity=0.445 Sum_probs=7.1
Q ss_pred HHHhHhhhhccCC
Q psy14736 38 LRSHLDKFQSVFP 50 (85)
Q Consensus 38 L~~~ldK~rsv~~ 50 (85)
|..+|..||-.+.
T Consensus 375 Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 375 LDAEIAAYRKLLE 387 (546)
T ss_pred HHhHHHHHHHHhc
Confidence 4455566665553
No 388
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.91 E-value=1.5e+02 Score=18.44 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy14736 16 AKESKIRELEEKV 28 (85)
Q Consensus 16 ~kd~~I~~Le~~l 28 (85)
..+++|+.||..|
T Consensus 53 rm~eRI~tLE~IL 65 (75)
T PF06667_consen 53 RMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444333
No 389
>PRK09458 pspB phage shock protein B; Provisional
Probab=21.90 E-value=1.7e+02 Score=18.48 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy14736 16 AKESKIRELEEKV 28 (85)
Q Consensus 16 ~kd~~I~~Le~~l 28 (85)
..+++|..||..|
T Consensus 53 rm~~RI~tLE~IL 65 (75)
T PRK09458 53 RMRERIQALEAIL 65 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 390
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=21.81 E-value=3.1e+02 Score=19.78 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14736 21 IRELEEKVKVQNEEIVQ 37 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~e 37 (85)
.++++.++.+.+.+|..
T Consensus 155 ~~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 155 REELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 391
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=21.78 E-value=2.7e+02 Score=19.03 Aligned_cols=38 Identities=5% Similarity=0.151 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
..|..++..+.+.-.+...+..++.+-|.+++..+..|
T Consensus 31 ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~~ 68 (134)
T PRK10328 31 EKFRVVTKERREEEEQQQRELAERQEKINTWLELMKAD 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666667777777777777777777776655
No 392
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.66 E-value=2.4e+02 Score=18.22 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 12 SILQAKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 12 ~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
.-|++.-++|+.||.+.......|.+.-.+.
T Consensus 14 ~QLrafIerIERlEeEk~~i~~dikdvy~ea 44 (85)
T COG3750 14 GQLRAFIERIERLEEEKKTIADDIKDVYAEA 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888899999999998888888766554
No 393
>PF11050 Viral_env_E26: Virus envelope protein E26; InterPro: IPR021286 DA26 (E26) is a multifunctional protein. One form of E26 associates with viral DNA or DNA binding proteins, while a second form associates with intracellular membranes [].
Probab=21.65 E-value=2.9e+02 Score=20.50 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEE 34 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~e 34 (85)
++-||.+|++|.+.|..|-.+|......
T Consensus 71 vRnmQ~LlRKKN~iIA~Laa~L~~~q~~ 98 (206)
T PF11050_consen 71 VRNMQRLLRKKNNIIANLAAQLESQQKK 98 (206)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 4789999999999999999999877655
No 394
>PRK14162 heat shock protein GrpE; Provisional
Probab=21.55 E-value=2.8e+02 Score=20.12 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
|..|+.++.+..+....++.+.+.|
T Consensus 48 l~~l~~e~~elkd~~lR~~AEfeN~ 72 (194)
T PRK14162 48 IADLKAKNKDLEDKYLRSQAEIQNM 72 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333333333
No 395
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.52 E-value=2.2e+02 Score=17.70 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=17.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKE-SKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 8 ~~lq~~l~~kd-~~I~~Le~~l~ekd~eI~eL~ 39 (85)
.+...++...+ ....-|+..+.+.++.|.+|+
T Consensus 61 ~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~ 93 (96)
T cd04768 61 AEIKELLDTEMEELTAMLLEKKQAIQQKIDRLQ 93 (96)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554332 344456666666666666554
No 396
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.39 E-value=3.2e+02 Score=20.42 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~ 39 (85)
-..+..-....|.+|..+++..+.++..|.
T Consensus 120 k~e~~~wl~~~Id~L~~QiE~~E~E~E~L~ 149 (233)
T PF04065_consen 120 KEEARDWLKDSIDELNRQIEQLEAEIESLS 149 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555444
No 397
>KOG4571|consensus
Probab=21.35 E-value=3e+02 Score=21.62 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ 41 (85)
=++|..+..+.+.||+.|+..
T Consensus 264 N~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 264 NEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555543
No 398
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=21.22 E-value=2.3e+02 Score=17.91 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=23.8
Q ss_pred ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 5 HTVDEMQSIL-QAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 5 ~~~~~lq~~l-~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
++..++..-| ..+...+..|+..|...+++...|..+|..
T Consensus 65 ~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 65 TPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433 355666777777777777777776666643
No 399
>PRK14144 heat shock protein GrpE; Provisional
Probab=21.18 E-value=2.6e+02 Score=20.45 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+..|..|++++.+..+....+..+++.||-
T Consensus 51 ~~~i~~le~e~~elkdk~lR~~AefeN~RK 80 (199)
T PRK14144 51 EEQLTLAEQKAHENWEKSVRALAELENVRR 80 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666655555555555555553
No 400
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=21.16 E-value=3.5e+02 Score=21.33 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 25 EEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 25 e~~l~ekd~eI~eL~~~ldK~rs 47 (85)
-..|.+|-.-|++|+..|...+.
T Consensus 186 ~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 186 VLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhc
Confidence 34457777888888888888776
No 401
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=21.12 E-value=3.1e+02 Score=19.31 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~ 39 (85)
.++..++.++.+.++.+.....+.-..|..|+
T Consensus 104 ~~~~~~~~er~el~e~v~~KN~qLk~iid~lR 135 (150)
T PF11315_consen 104 EEYRQLLEERKELIEQVKQKNQQLKEIIDQLR 135 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666655444444444444444
No 402
>PRK14156 heat shock protein GrpE; Provisional
Probab=21.10 E-value=2.2e+02 Score=20.38 Aligned_cols=27 Identities=7% Similarity=0.229 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
.|..+++++++..+....++.+.+.|+
T Consensus 35 ~l~~l~~e~~elkd~~lR~~AEfeN~r 61 (177)
T PRK14156 35 ELELANERADEFENKYLRAHAEMQNIQ 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 403
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=21.10 E-value=2.9e+02 Score=20.52 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
.+|.+......|.+++++.-..|..++..||+=.+.
T Consensus 76 ~~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek~~ 111 (209)
T COG5124 76 TLQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKAT 111 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 345666667777777777777777777777765554
No 404
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=20.90 E-value=1.1e+02 Score=20.72 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+.++............+|+..+++|+
T Consensus 186 ~~~~~~~~~~l~~~a~~L~~~v~~Fk 211 (213)
T PF00015_consen 186 SEEIAEAAEELSESAEELQELVDRFK 211 (213)
T ss_dssp HHHHHHHHHHHHHHHCCCCHHCHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333333444444444444444443
No 405
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=20.89 E-value=1.1e+02 Score=19.61 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 27 KVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 27 ~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
.+.....++.+++.+++.+...+|...
T Consensus 24 ~l~~~~~~~~~~~~~l~~~~~~lP~~~ 50 (144)
T PF04350_consen 24 NLEELKKQLEQLEQQLEELLKKLPAEE 50 (144)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 344556666777777888888776543
No 406
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=20.86 E-value=2.3e+02 Score=22.10 Aligned_cols=11 Identities=9% Similarity=0.259 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q psy14736 8 DEMQSILQAKE 18 (85)
Q Consensus 8 ~~lq~~l~~kd 18 (85)
.+|...|.++.
T Consensus 94 ~RL~~EL~~Rk 104 (355)
T PF09766_consen 94 ARLEFELEQRK 104 (355)
T ss_pred HHHHHHHHHHH
Confidence 55666664443
No 407
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.85 E-value=2.1e+02 Score=17.46 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q psy14736 24 LEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 24 Le~~l~ekd~eI~eL~~~l 42 (85)
|..++...+.+|.+|+.++
T Consensus 70 l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 70 LEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555443
No 408
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=20.83 E-value=2.2e+02 Score=17.47 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
....+..++..|+++.......+-++..|-++.++
T Consensus 28 ~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r 62 (80)
T PF11488_consen 28 RFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 33444566666777777776666666666655543
No 409
>KOG0979|consensus
Probab=20.79 E-value=2e+02 Score=26.31 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
++++.....++.|..|.++++-+..++++|.+++.|++.++
T Consensus 626 ~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~l 666 (1072)
T KOG0979|consen 626 VLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKEL 666 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34444456666777777777888888888888887777766
No 410
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=20.75 E-value=3.7e+02 Score=20.09 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHhH
Q psy14736 14 LQAKESKIRELEEKV----KVQNEEIVQLRSHL 42 (85)
Q Consensus 14 l~~kd~~I~~Le~~l----~ekd~eI~eL~~~l 42 (85)
++++++.|..|...| .|+|+--.+++.-+
T Consensus 28 lRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 28 LRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444 44444444444433
No 411
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=20.69 E-value=3.5e+02 Score=21.45 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQN 32 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd 32 (85)
--||.-+++.++.|.+++++|.--+
T Consensus 178 ~LLqkk~~~l~~~l~~~~~eL~~~~ 202 (323)
T PF08537_consen 178 ILLQKKIDELEERLNDLEKELEITK 202 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666554333
No 412
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=20.58 E-value=1.5e+02 Score=20.32 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14736 20 KIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~ 39 (85)
.|+.|..+|++....|..|.
T Consensus 110 dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 110 DVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555443
No 413
>PRK05560 DNA gyrase subunit A; Validated
Probab=20.51 E-value=2.7e+02 Score=24.23 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
|+..+....+.|.+|+..|...+..+..+.++|+.++.-|
T Consensus 435 L~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkf 474 (805)
T PRK05560 435 IEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKF 474 (805)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555554444444444444444333
No 414
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=20.42 E-value=4.1e+02 Score=20.71 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+|...++........|.+++..+.+-+..|..+|+.|....
T Consensus 105 ~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~ 145 (355)
T PF09766_consen 105 RLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAA 145 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444445555556666666666666666666666665544
No 415
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=20.39 E-value=2e+02 Score=17.71 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14736 21 IRELEEKVKVQNEEIVQL 38 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL 38 (85)
+..+..+|...+..|..|
T Consensus 59 L~~~r~kl~~LEarl~~L 76 (79)
T PF04380_consen 59 LARTREKLEALEARLAAL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 416
>KOG3977|consensus
Probab=20.36 E-value=2.8e+02 Score=20.82 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=36.8
Q ss_pred ccHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHhhhhccCCCC
Q psy14736 5 HTVDE---MQSILQAKESKIRELEEKV-------KVQNEEIVQLRSHLDKFQSVFPYH 52 (85)
Q Consensus 5 ~~~~~---lq~~l~~kd~~I~~Le~~l-------~ekd~eI~eL~~~ldK~rsv~~~~ 52 (85)
|++.+ |+.+.++.-.++..|+.+- ...+.+|..|.-++--+|.-|...
T Consensus 85 d~l~d~g~Lq~ly~~l~arv~~leEEkYDi~~~v~qt~~EIndLtikvnDLRGKFvkP 142 (221)
T KOG3977|consen 85 DSLDDRGLLQDLYRELHARVDALEEEKYDIEAKVTQTETEINDLTIKVNDLRGKFVKP 142 (221)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHhhcchhheeehhhhhHHHHHHHHHHhcccccCc
Confidence 34455 7888888888888887764 677889999999998888877443
No 417
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.33 E-value=3.9e+02 Score=22.69 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHhHhh
Q psy14736 28 VKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 28 l~ekd~eI~eL~~~ldK 44 (85)
++..+.++...+.++++
T Consensus 173 v~~l~~eL~~~~ee~e~ 189 (546)
T PF07888_consen 173 VERLEAELEQEEEEMEQ 189 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 418
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=20.21 E-value=3.5e+02 Score=19.62 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14736 21 IRELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~ 40 (85)
+..|+..|-++..++..|+.
T Consensus 49 ~~~Lq~qLlq~~k~~~~l~~ 68 (206)
T PF14988_consen 49 TSELQDQLLQKEKEQAKLQQ 68 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333
No 419
>PRK04863 mukB cell division protein MukB; Provisional
Probab=20.20 E-value=3.3e+02 Score=25.71 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+|+..+...+..+.+++.++.+.+.++..++..+..|+...
T Consensus 437 dEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~ 479 (1486)
T PRK04863 437 ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAY 479 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777777777777776666543
No 420
>PRK14163 heat shock protein GrpE; Provisional
Probab=20.15 E-value=2.6e+02 Score=20.71 Aligned_cols=26 Identities=4% Similarity=0.354 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
|..|++++.+..+.+..++-+.+.||
T Consensus 49 l~~l~~e~~el~d~~lR~~AEfeN~r 74 (214)
T PRK14163 49 LDQVRTALGERTADLQRLQAEYQNYR 74 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444
No 421
>PTZ00464 SNF-7-like protein; Provisional
Probab=20.12 E-value=3.6e+02 Score=19.72 Aligned_cols=36 Identities=6% Similarity=0.292 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
++..+...+.++..|++++...+.++...+..+.+.
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~ 51 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRT 51 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555556666666666666666666655555443
No 422
>COG3006 MukF Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.12 E-value=3.6e+02 Score=21.82 Aligned_cols=43 Identities=26% Similarity=0.495 Sum_probs=29.6
Q ss_pred CccccHHHHHHHHHH----HHHHHHHHH------HHHHHHHHHHHHHHHhHhhhhc
Q psy14736 2 GTVHTVDEMQSILQA----KESKIRELE------EKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 2 ~~~~~~~~lq~~l~~----kd~~I~~Le------~~l~ekd~eI~eL~~~ldK~rs 47 (85)
||+ ++||..|+. ....+-..+ ..|+.-|..|..|+++||..-|
T Consensus 213 g~l---relqdtl~aagdklqa~llriqd~~ig~~~l~fvd~li~dlq~kldriis 265 (440)
T COG3006 213 GTL---RELQDTLEAAGDKLQANLLRIQDATIGHDDLHFVDRLVFDLQSKLDRIIS 265 (440)
T ss_pred chH---HHHHHHHHHhhHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 667 999999952 222222222 2457788999999999998766
No 423
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=20.08 E-value=4.2e+02 Score=20.54 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
||--|+.+-..-++|+.-.++-...-.+|+.+||-++
T Consensus 28 LqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLq 64 (277)
T PF15030_consen 28 LQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQ 64 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444445555555444
No 424
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=20.07 E-value=2.6e+02 Score=18.63 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
|...+.+++++...+..+..|...+.+|-..+
T Consensus 25 D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 56 (229)
T PF03114_consen 25 DEEFEELEEKFKQLEESIKKLQKSLKKYLDSI 56 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999887754
Done!