Query psy14736
Match_columns 85
No_of_seqs 78 out of 80
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 19:19:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 99.6 2.5E-16 8.5E-21 98.1 6.1 48 1-51 18-72 (72)
2 1zxa_A CGMP-dependent protein 99.4 3.4E-13 1.2E-17 82.9 4.7 49 5-53 11-59 (67)
3 3nmd_A CGMP dependent protein 95.3 0.027 9.3E-07 34.6 4.3 32 18-49 32-63 (72)
4 1ykh_A RNA polymerase II media 92.2 0.22 7.4E-06 32.5 4.4 35 15-49 72-106 (108)
5 2w6a_A ARF GTPase-activating p 91.6 0.71 2.4E-05 27.4 5.8 42 8-49 16-57 (63)
6 3m9b_A Proteasome-associated A 90.1 0.51 1.8E-05 34.8 5.2 40 8-47 57-96 (251)
7 1jnm_A Proto-oncogene C-JUN; B 88.2 1.4 4.9E-05 25.2 5.2 34 16-49 26-59 (62)
8 2wt7_A Proto-oncogene protein 87.8 1.4 4.9E-05 25.4 5.1 34 16-49 27-60 (63)
9 1t6f_A Geminin; coiled-coil, c 87.7 2.1 7E-05 22.9 5.3 26 21-46 9-34 (37)
10 1t2k_D Cyclic-AMP-dependent tr 87.7 1.5 5.2E-05 25.0 5.1 34 16-49 26-59 (61)
11 1gu4_A CAAT/enhancer binding p 87.0 1.6 5.5E-05 26.6 5.2 35 16-50 40-74 (78)
12 3efg_A Protein SLYX homolog; x 86.7 3.3 0.00011 25.1 6.4 44 8-51 17-60 (78)
13 3m91_A Proteasome-associated A 85.7 3.4 0.00011 23.4 6.3 39 8-46 12-50 (51)
14 2dgc_A Protein (GCN4); basic d 85.3 2.2 7.5E-05 24.8 5.0 35 15-49 26-60 (63)
15 1hjb_A Ccaat/enhancer binding 85.3 1.5 5E-05 27.4 4.4 35 16-50 40-74 (87)
16 1dh3_A Transcription factor CR 84.1 3.2 0.00011 23.5 5.2 34 16-49 19-52 (55)
17 3a7o_A Autophagy protein 16; c 84.1 3.9 0.00013 24.9 5.8 33 9-41 22-54 (75)
18 2q6q_A Spindle POLE BODY compo 84.0 1.4 4.8E-05 26.8 3.8 28 22-49 6-33 (74)
19 2ke4_A CDC42-interacting prote 83.9 3.9 0.00013 25.8 6.0 22 28-49 64-85 (98)
20 2yy0_A C-MYC-binding protein; 83.0 3 0.0001 23.6 4.7 26 20-45 27-52 (53)
21 3a7p_A Autophagy protein 16; c 81.0 5.4 0.00018 27.3 6.2 39 8-46 71-109 (152)
22 1ci6_A Transcription factor AT 80.7 4.6 0.00016 23.3 5.1 31 18-48 29-59 (63)
23 1lwu_C Fibrinogen gamma chain; 80.5 4.4 0.00015 30.5 6.2 42 8-49 15-56 (323)
24 2v4h_A NF-kappa-B essential mo 79.4 5.6 0.00019 26.0 5.6 42 8-49 34-78 (110)
25 2akf_A Coronin-1A; coiled coil 79.3 1.6 5.5E-05 22.5 2.4 22 24-45 4-25 (32)
26 3a7o_A Autophagy protein 16; c 78.9 4 0.00014 24.9 4.5 23 20-42 19-41 (75)
27 1zxa_A CGMP-dependent protein 78.7 2.8 9.5E-05 25.1 3.7 26 8-33 28-53 (67)
28 1t2k_D Cyclic-AMP-dependent tr 78.5 5.5 0.00019 22.5 4.9 33 15-47 18-50 (61)
29 1jnm_A Proto-oncogene C-JUN; B 78.2 5.6 0.00019 22.6 4.9 35 15-49 18-52 (62)
30 1use_A VAsp, vasodilator-stimu 77.4 4.6 0.00016 22.5 4.1 30 15-44 11-41 (45)
31 2wg5_A General control protein 76.0 2.6 9E-05 26.7 3.3 28 20-47 8-35 (109)
32 2wq1_A General control protein 75.8 6.7 0.00023 20.5 4.4 27 16-42 4-30 (33)
33 3vmx_A Voltage-gated hydrogen 75.7 8.6 0.00029 21.6 6.1 38 7-44 6-43 (48)
34 2wt7_A Proto-oncogene protein 74.2 8.6 0.0003 22.0 5.0 33 15-47 19-51 (63)
35 1gd2_E Transcription factor PA 72.4 9.1 0.00031 22.8 4.9 25 16-40 26-50 (70)
36 3vp9_A General transcriptional 72.0 12 0.00041 23.6 5.6 22 23-44 65-86 (92)
37 1ci6_A Transcription factor AT 71.3 12 0.00042 21.4 5.9 30 17-46 21-50 (63)
38 2zqm_A Prefoldin beta subunit 70.8 8.2 0.00028 23.7 4.7 29 16-44 81-109 (117)
39 1gd2_E Transcription factor PA 70.6 12 0.00042 22.2 5.2 35 13-47 30-64 (70)
40 1sb0_B Protein C-MYB; CREB-bin 70.3 5.7 0.00019 19.6 3.0 21 17-37 1-21 (26)
41 3na7_A HP0958; flagellar bioge 70.2 14 0.00047 26.1 6.3 37 13-49 47-83 (256)
42 3qh9_A Liprin-beta-2; coiled-c 70.0 9.8 0.00034 23.5 4.7 24 19-42 54-77 (81)
43 3a2a_A Voltage-gated hydrogen 68.4 15 0.00051 21.3 5.9 37 7-43 13-49 (58)
44 1t3j_A Mitofusin 1; coiled coi 68.3 11 0.00039 23.8 4.9 32 16-47 51-92 (96)
45 1fxk_A Prefoldin; archaeal pro 68.1 10 0.00036 22.9 4.7 34 14-47 67-100 (107)
46 1kd8_A GABH AIV, GCN4 acid bas 68.1 12 0.00039 19.9 4.4 29 16-44 5-33 (36)
47 4b4t_J 26S protease regulatory 67.6 13 0.00044 28.6 6.0 41 8-48 28-68 (405)
48 2dgc_A Protein (GCN4); basic d 67.0 14 0.00049 21.2 4.8 32 12-43 30-61 (63)
49 3m48_A General control protein 66.2 12 0.00042 19.5 4.1 27 16-42 4-30 (33)
50 2akf_A Coronin-1A; coiled coil 66.2 12 0.0004 19.2 4.7 28 9-36 3-30 (32)
51 3mq7_A Bone marrow stromal ant 66.1 14 0.00047 24.4 5.1 30 14-43 73-102 (121)
52 3hnw_A Uncharacterized protein 66.0 23 0.00077 23.4 6.3 28 18-45 102-129 (138)
53 1uii_A Geminin; human, DNA rep 66.0 21 0.00071 22.1 6.2 29 19-47 46-74 (83)
54 2zqm_A Prefoldin beta subunit 65.6 20 0.00069 21.8 5.9 42 9-50 67-108 (117)
55 1wt6_A Myotonin-protein kinase 65.1 22 0.00074 22.0 6.4 32 16-47 42-73 (81)
56 1wlq_A Geminin; coiled-coil; 2 65.0 22 0.00075 22.0 5.8 28 20-47 39-66 (83)
57 3gpv_A Transcriptional regulat 64.8 17 0.00059 23.6 5.5 38 16-53 99-136 (148)
58 1zme_C Proline utilization tra 63.9 11 0.00037 21.0 3.8 23 20-42 45-67 (70)
59 3mq9_A Bone marrow stromal ant 63.8 16 0.00056 27.2 5.8 31 16-46 440-470 (471)
60 3efg_A Protein SLYX homolog; x 63.3 22 0.00074 21.3 6.0 34 16-49 18-51 (78)
61 3jsv_C NF-kappa-B essential mo 63.0 24 0.00082 22.3 5.6 40 10-49 14-56 (94)
62 1am9_A Srebp-1A, protein (ster 62.8 22 0.00074 21.2 5.3 34 15-48 46-79 (82)
63 1q08_A Zn(II)-responsive regul 62.5 21 0.00073 21.0 5.8 28 20-47 40-67 (99)
64 1m1j_C Fibrinogen gamma chain; 62.5 18 0.00061 28.0 5.9 40 10-49 96-135 (409)
65 1i6z_A BAG-family molecular ch 61.9 16 0.00053 24.6 4.8 35 15-49 96-130 (135)
66 2zdi_C Prefoldin subunit alpha 61.0 18 0.00063 23.5 5.1 40 10-49 96-135 (151)
67 1nkp_B MAX protein, MYC proto- 60.8 23 0.00079 20.8 5.8 30 15-44 50-79 (83)
68 2oqq_A Transcription factor HY 58.9 20 0.00069 19.6 4.7 34 16-49 7-40 (42)
69 3ghg_C Fibrinogen gamma chain; 58.5 30 0.001 26.9 6.6 42 8-49 94-135 (411)
70 1uo4_A General control protein 58.3 18 0.00062 18.9 4.1 27 16-42 5-31 (34)
71 2wvr_A Geminin; DNA replicatio 58.3 25 0.00084 25.2 5.6 30 20-49 116-145 (209)
72 2yy0_A C-MYC-binding protein; 58.1 20 0.00069 20.0 4.2 31 19-49 19-49 (53)
73 3gp4_A Transcriptional regulat 58.0 27 0.00092 22.6 5.5 32 18-49 87-118 (142)
74 1kd8_B GABH BLL, GCN4 acid bas 57.3 20 0.00068 19.0 4.4 29 16-44 5-33 (36)
75 3l4q_C Phosphatidylinositol 3- 56.7 36 0.0012 23.4 6.2 43 7-49 112-154 (170)
76 1fxk_C Protein (prefoldin); ar 56.6 28 0.00095 21.9 5.3 37 11-47 87-123 (133)
77 2p22_C Protein SRN2; endosome, 56.0 33 0.0011 23.8 5.9 45 3-47 60-104 (192)
78 4emc_A Monopolin complex subun 55.9 26 0.00088 24.8 5.3 19 27-45 35-53 (190)
79 2no2_A HIP-I, huntingtin-inter 55.9 27 0.00094 22.1 5.1 32 16-47 51-82 (107)
80 1j1d_C Troponin I, TNI; THIN f 55.8 36 0.0012 22.6 5.8 44 6-49 59-109 (133)
81 3kin_B Kinesin heavy chain; mo 55.6 24 0.00082 22.4 4.8 26 21-46 91-116 (117)
82 3hnw_A Uncharacterized protein 55.3 41 0.0014 22.0 6.2 24 20-43 76-99 (138)
83 3rrk_A V-type ATPase 116 kDa s 54.7 37 0.0013 24.5 6.3 40 7-46 94-136 (357)
84 3u06_A Protein claret segregat 54.1 34 0.0012 26.1 6.2 29 9-37 7-35 (412)
85 3pbf_A Pulmonary surfactant-as 53.2 14 0.00046 22.9 3.3 29 19-48 2-30 (148)
86 3cve_A Homer protein homolog 1 52.9 35 0.0012 20.4 5.8 35 15-49 17-51 (72)
87 3kin_B Kinesin heavy chain; mo 52.5 29 0.00098 22.1 4.8 33 7-39 84-116 (117)
88 3nr7_A DNA-binding protein H-N 52.4 38 0.0013 20.7 6.4 43 7-49 26-68 (86)
89 3cvf_A Homer-3, homer protein 51.6 38 0.0013 20.6 5.8 35 15-49 23-57 (79)
90 1dip_A Delta-sleep-inducing pe 50.7 33 0.0011 20.9 4.6 38 16-53 19-61 (78)
91 1gmj_A ATPase inhibitor; coile 50.4 42 0.0014 20.7 6.1 21 26-46 51-71 (84)
92 3c3f_A Alpha/beta peptide with 50.1 26 0.0009 18.3 4.4 27 16-42 5-31 (34)
93 3oja_B Anopheles plasmodium-re 50.0 29 0.001 26.4 5.3 17 33-49 565-581 (597)
94 2cly_B ATP synthase D chain, m 49.8 24 0.00082 23.8 4.3 38 16-53 92-129 (160)
95 2lw1_A ABC transporter ATP-bin 48.9 34 0.0012 20.5 4.5 22 21-42 24-45 (89)
96 2ocy_A RAB guanine nucleotide 48.5 30 0.001 23.5 4.6 37 16-52 112-148 (154)
97 3trt_A Vimentin; cytoskeleton, 48.4 37 0.0013 19.5 6.2 25 21-45 51-75 (77)
98 4e61_A Protein BIM1; EB1-like 48.3 52 0.0018 21.1 5.8 38 6-43 5-42 (106)
99 4b4t_K 26S protease regulatory 48.0 52 0.0018 25.2 6.4 26 22-47 66-91 (428)
100 1jcd_A Major outer membrane li 47.9 36 0.0012 19.1 4.2 28 20-47 5-32 (52)
101 3oja_B Anopheles plasmodium-re 47.4 49 0.0017 25.1 6.2 24 22-45 547-570 (597)
102 2xdj_A Uncharacterized protein 47.4 45 0.0016 20.2 6.3 17 24-40 25-41 (83)
103 1lwu_C Fibrinogen gamma chain; 46.4 47 0.0016 24.9 5.8 27 15-41 29-55 (323)
104 2oxj_A Hybrid alpha/beta pepti 46.0 31 0.0011 18.0 4.4 27 16-42 5-31 (34)
105 1ic2_A Tropomyosin alpha chain 45.9 44 0.0015 19.7 6.3 37 11-47 26-62 (81)
106 4din_B CAMP-dependent protein 45.4 6.8 0.00023 28.6 1.0 13 71-83 94-106 (381)
107 3c3g_A Alpha/beta peptide with 45.1 32 0.0011 17.8 4.4 27 16-42 4-30 (33)
108 3tso_C RAB11 family-interactin 44.9 39 0.0013 20.5 4.2 30 20-49 22-51 (75)
109 1fzc_C Fibrin; blood coagulati 44.8 12 0.00039 28.2 2.2 35 15-49 14-48 (319)
110 2wuj_A Septum site-determining 44.1 39 0.0013 18.8 4.0 27 20-46 28-54 (57)
111 3viq_B Mating-type switching p 44.0 33 0.0011 21.2 3.9 19 21-39 10-28 (85)
112 3viq_A SWI5-dependent recombin 44.0 39 0.0013 21.9 4.4 42 8-49 10-52 (122)
113 1rtm_1 Mannose-binding protein 43.7 23 0.00078 22.1 3.2 21 27-47 5-25 (149)
114 3hhm_B NISH2 P85alpha; PI3KCA, 43.6 49 0.0017 25.0 5.6 42 8-49 222-263 (373)
115 2jee_A YIIU; FTSZ, septum, coi 43.4 55 0.0019 20.0 5.7 17 31-47 53-69 (81)
116 3gp4_A Transcriptional regulat 43.3 64 0.0022 20.7 5.8 19 18-36 94-112 (142)
117 2er8_A Regulatory protein Leu3 43.3 15 0.00051 20.5 2.1 20 19-38 49-68 (72)
118 4emc_A Monopolin complex subun 43.2 73 0.0025 22.4 6.0 37 8-44 30-66 (190)
119 3etw_A Adhesin A; antiparallel 43.2 47 0.0016 21.6 4.7 32 16-47 72-103 (119)
120 1uuj_A Platelet-activating fac 43.1 16 0.00054 22.8 2.3 32 13-44 52-83 (88)
121 3he4_B Synzip5; heterodimeric 42.1 41 0.0014 18.2 4.0 16 27-42 14-29 (46)
122 3mq9_A Bone marrow stromal ant 41.7 41 0.0014 25.0 4.9 20 25-44 442-461 (471)
123 1j1d_B Troponin T, TNT; THIN f 41.7 66 0.0022 20.4 6.0 40 6-45 43-89 (106)
124 2pms_C Pneumococcal surface pr 41.2 41 0.0014 22.2 4.2 31 17-47 59-89 (125)
125 1nkp_B MAX protein, MYC proto- 40.9 53 0.0018 19.2 5.4 37 13-49 41-77 (83)
126 1l8d_A DNA double-strand break 40.8 59 0.002 19.6 6.6 29 15-43 74-102 (112)
127 1fxk_A Prefoldin; archaeal pro 40.7 57 0.0019 19.4 6.4 43 5-47 1-43 (107)
128 2xz3_A Maltose ABC transporter 40.7 64 0.0022 23.9 5.8 35 15-49 375-409 (463)
129 1fxk_C Protein (prefoldin); ar 40.5 66 0.0023 20.1 6.3 41 7-47 3-43 (133)
130 3gpv_A Transcriptional regulat 40.4 72 0.0025 20.5 6.0 35 18-52 94-128 (148)
131 2hy6_A General control protein 39.9 41 0.0014 17.5 4.4 27 16-42 5-31 (34)
132 2l5g_B Putative uncharacterize 39.7 46 0.0016 18.1 4.7 32 8-39 5-36 (42)
133 1wt6_A Myotonin-protein kinase 38.1 69 0.0024 19.6 4.8 25 25-49 44-68 (81)
134 2c5k_T Syntaxin TLG1, T-snare 37.5 71 0.0024 19.6 5.6 41 8-48 39-90 (95)
135 4h22_A Leucine-rich repeat fli 37.1 81 0.0028 20.1 6.2 35 10-44 35-69 (103)
136 3viq_B Mating-type switching p 37.0 54 0.0018 20.2 4.1 27 23-49 5-31 (85)
137 3mq7_A Bone marrow stromal ant 36.9 88 0.003 20.5 6.2 42 8-49 56-101 (121)
138 3azd_A Short alpha-tropomyosin 36.4 25 0.00086 18.3 2.1 25 18-42 10-34 (37)
139 1hlo_A Protein (transcription 36.4 64 0.0022 18.8 4.4 27 15-41 53-79 (80)
140 2v71_A Nuclear distribution pr 35.9 1.1E+02 0.0037 21.3 6.3 29 18-46 48-76 (189)
141 3a7p_A Autophagy protein 16; c 35.0 1E+02 0.0036 20.8 6.3 32 14-45 70-101 (152)
142 2gzd_C RAB11 family-interactin 34.9 18 0.00061 23.4 1.6 29 20-48 54-82 (107)
143 3fx0_A NF-kappa-B essential mo 34.6 13 0.00045 23.6 1.0 35 15-49 34-71 (96)
144 1ik9_A DNA repair protein XRCC 34.6 1E+02 0.0036 21.5 5.8 31 17-47 137-167 (213)
145 2pnv_A Small conductance calci 34.6 57 0.0019 17.6 4.9 24 19-42 16-39 (43)
146 3u1c_A Tropomyosin alpha-1 cha 34.5 81 0.0028 19.4 6.3 25 23-47 41-65 (101)
147 2zxx_A Geminin; coiled-coil, c 34.5 78 0.0027 19.2 5.3 26 21-46 36-61 (79)
148 3twe_A Alpha4H; unknown functi 34.4 44 0.0015 16.3 3.4 19 22-40 4-22 (27)
149 1uii_A Geminin; human, DNA rep 34.3 82 0.0028 19.4 5.4 27 16-42 50-76 (83)
150 4etp_A Kinesin-like protein KA 34.3 1E+02 0.0035 23.3 6.1 13 34-46 46-58 (403)
151 2zdi_C Prefoldin subunit alpha 34.0 71 0.0024 20.6 4.6 42 6-47 10-54 (151)
152 4b6x_A AVRRPS4, avirulence pro 34.0 58 0.002 20.2 3.8 25 8-32 25-49 (90)
153 1q08_A Zn(II)-responsive regul 33.8 72 0.0024 18.5 5.4 33 15-47 42-74 (99)
154 2r2v_A GCN4 leucine zipper; co 33.7 53 0.0018 17.1 4.7 27 16-42 5-31 (34)
155 1t98_A KICB protein, chromosom 33.5 84 0.0029 23.3 5.3 43 2-47 213-265 (287)
156 1pyi_A Protein (pyrimidine pat 33.2 29 0.00098 20.3 2.3 21 20-40 49-69 (96)
157 1hjb_A Ccaat/enhancer binding 33.0 85 0.0029 19.2 5.8 39 9-47 40-78 (87)
158 1q06_A Transcriptional regulat 32.9 93 0.0032 19.6 5.8 30 20-49 80-109 (135)
159 2ve7_A Kinetochore protein HEC 32.8 37 0.0013 24.9 3.3 20 20-39 186-205 (315)
160 3ra3_A P1C; coiled coil domain 32.7 43 0.0015 16.4 2.5 24 21-44 2-25 (28)
161 2qyw_A Vesicle transport throu 32.6 88 0.003 19.2 5.9 26 17-42 47-72 (102)
162 1r8e_A Multidrug-efflux transp 32.6 44 0.0015 22.8 3.5 26 21-46 88-113 (278)
163 3iv1_A Tumor susceptibility ge 32.4 85 0.0029 19.0 6.5 34 15-48 42-75 (78)
164 4ani_A Protein GRPE; chaperone 31.9 93 0.0032 21.9 5.2 29 18-46 65-93 (213)
165 4ghu_A TNF receptor-associated 31.8 84 0.0029 21.1 4.8 28 19-46 7-34 (198)
166 2wvr_A Geminin; DNA replicatio 31.7 1.1E+02 0.0036 21.9 5.4 27 10-36 120-146 (209)
167 4ghu_A TNF receptor-associated 31.6 69 0.0023 21.6 4.3 26 7-32 9-34 (198)
168 2eqb_B RAB guanine nucleotide 31.4 99 0.0034 19.4 5.0 28 17-44 10-37 (97)
169 2k48_A Nucleoprotein; viral pr 31.3 96 0.0033 19.9 4.7 18 29-46 78-95 (107)
170 2bni_A General control protein 31.0 60 0.0021 16.8 4.0 23 18-40 7-29 (34)
171 3ni0_A Bone marrow stromal ant 30.8 1E+02 0.0036 19.5 6.2 37 9-45 50-86 (99)
172 2zvf_A Alanyl-tRNA synthetase; 30.7 76 0.0026 20.4 4.3 27 19-45 32-58 (171)
173 2v71_A Nuclear distribution pr 30.5 1.4E+02 0.0047 20.8 6.2 29 13-41 50-78 (189)
174 1c94_A Retro-GCN4 leucine zipp 30.4 63 0.0021 16.8 3.7 28 20-47 10-37 (38)
175 3rrk_A V-type ATPase 116 kDa s 29.9 1.2E+02 0.0042 21.7 5.7 31 11-41 225-255 (357)
176 1nlw_A MAD protein, MAX dimeri 29.9 89 0.0031 18.4 5.8 27 16-42 51-77 (80)
177 2qm4_A Non-homologous END-join 29.7 1.3E+02 0.0045 21.3 5.7 25 15-39 146-170 (235)
178 1gmj_A ATPase inhibitor; coile 29.0 1E+02 0.0035 18.9 6.2 27 19-45 51-77 (84)
179 2vz4_A Tipal, HTH-type transcr 28.8 49 0.0017 20.0 2.9 27 21-47 76-102 (108)
180 3ghg_A Fibrinogen alpha chain; 28.6 1.3E+02 0.0044 24.5 5.9 25 19-43 131-155 (562)
181 1hwt_C Protein (heme activator 28.2 24 0.00084 20.0 1.3 18 20-37 59-76 (81)
182 2p22_A Suppressor protein STP2 27.7 1.5E+02 0.0051 20.3 5.7 33 15-47 59-91 (174)
183 2z5i_A TM, general control pro 27.7 82 0.0028 17.3 5.0 30 15-44 15-44 (52)
184 4e8u_A Putative uncharacterize 27.7 1.5E+02 0.0051 20.3 5.7 36 6-41 134-170 (172)
185 4dzn_A Coiled-coil peptide CC- 27.7 66 0.0023 16.3 4.1 22 21-42 4-25 (33)
186 3pjs_K KCSA, voltage-gated pot 27.7 1.3E+02 0.0043 19.5 5.8 29 18-46 137-165 (166)
187 2a3d_A Protein (de novo three- 27.5 61 0.0021 19.0 3.0 43 1-46 1-46 (73)
188 2y7c_A Type-1 restriction enzy 27.4 1.2E+02 0.004 21.7 5.2 11 4-14 372-382 (464)
189 2gkw_A TNF receptor-associated 27.4 1.4E+02 0.0046 19.7 5.2 33 8-40 3-35 (192)
190 4ayc_A E3 ubiquitin-protein li 27.2 1.2E+02 0.0039 18.9 6.0 26 1-29 1-26 (138)
191 1vcs_A Vesicle transport throu 26.9 1.1E+02 0.0038 18.6 6.2 25 18-42 37-61 (102)
192 2zet_C Melanophilin; complex, 26.8 1.4E+02 0.0048 19.7 5.4 24 16-45 30-53 (153)
193 1naf_A ADP-ribosylation factor 26.6 1.1E+02 0.0039 20.5 4.7 36 8-47 32-67 (158)
194 4dyl_A Tyrosine-protein kinase 26.4 1.6E+02 0.0053 21.9 5.8 42 8-49 305-346 (406)
195 3m9b_A Proteasome-associated A 26.2 64 0.0022 23.5 3.5 35 16-50 58-92 (251)
196 2e7s_A RAB guanine nucleotide 26.2 15 0.0005 24.6 0.1 34 16-49 100-133 (135)
197 3tnp_B CAMP-dependent protein 26.1 25 0.00086 26.0 1.4 14 70-83 106-119 (416)
198 3i00_A HIP-I, huntingtin-inter 25.9 1.3E+02 0.0046 19.2 6.0 20 15-34 43-62 (120)
199 1r8d_A Transcription activator 25.5 1.1E+02 0.0039 18.2 5.4 27 21-47 77-103 (109)
200 1g6u_A Domain swapped dimer; d 25.2 90 0.0031 17.0 4.1 26 19-44 20-45 (48)
201 4etp_A Kinesin-like protein KA 25.1 2E+02 0.0068 21.6 6.3 13 16-28 21-33 (403)
202 1t7s_A BAG-1 cochaperone; stru 24.7 1.1E+02 0.0036 20.5 4.1 41 10-50 96-136 (137)
203 3hh0_A Transcriptional regulat 24.7 1.4E+02 0.0049 19.1 5.9 28 20-47 88-115 (146)
204 3s9g_A Protein hexim1; cyclin 24.5 1.4E+02 0.0049 19.0 5.6 22 18-39 64-85 (104)
205 1oxz_A ADP-ribosylation factor 24.4 1.5E+02 0.0051 20.4 5.0 8 8-15 48-55 (186)
206 1ca9_A TRAF2, protein (TNF rec 24.4 99 0.0034 20.2 4.0 22 23-44 14-35 (192)
207 1k1f_A Breakpoint cluster regi 24.4 1.2E+02 0.0041 18.1 6.0 39 6-44 27-65 (72)
208 1buu_A Protein (mannose-bindin 24.3 80 0.0027 20.0 3.5 21 20-40 24-44 (168)
209 3oa7_A Head morphogenesis prot 24.1 1.8E+02 0.0061 20.7 5.4 40 10-49 28-67 (206)
210 3sjb_C Golgi to ER traffic pro 23.8 81 0.0028 19.7 3.2 28 22-49 52-79 (93)
211 2zhg_A Redox-sensitive transcr 23.5 1.5E+02 0.005 19.2 4.7 28 22-49 93-120 (154)
212 3euh_A Protein KICB, chromosom 23.4 58 0.002 25.7 3.0 43 2-47 213-265 (440)
213 1nkp_A C-MYC, MYC proto-oncoge 23.1 1.3E+02 0.0044 18.0 6.2 32 15-46 55-86 (88)
214 1a93_B MAX protein, coiled coi 22.6 92 0.0031 16.1 4.1 23 16-38 11-33 (34)
215 2nrj_A HBL B protein; enteroto 22.3 1.1E+02 0.0037 22.7 4.3 35 16-50 159-193 (346)
216 1d7m_A Cortexillin I; coiled-c 22.2 1.6E+02 0.0053 18.6 5.9 27 18-44 31-57 (101)
217 2v4h_A NF-kappa-B essential mo 22.2 1.6E+02 0.0056 18.9 6.2 36 8-43 27-62 (110)
218 3swk_A Vimentin; cytoskeleton, 22.1 81 0.0028 18.9 3.0 26 21-46 9-34 (86)
219 4b4t_K 26S protease regulatory 22.0 1.4E+02 0.0047 22.8 4.8 41 9-49 46-86 (428)
220 3ghg_A Fibrinogen alpha chain; 21.4 2.3E+02 0.0078 23.0 6.1 22 26-47 131-152 (562)
221 4dac_A Computationally designe 21.4 50 0.0017 16.2 1.5 21 16-36 5-25 (28)
222 3tso_C RAB11 family-interactin 21.4 1.4E+02 0.0049 17.9 5.4 33 7-39 16-48 (75)
223 2ic9_A Nucleocapsid protein; h 21.1 1.6E+02 0.0056 18.5 6.4 12 1-15 4-15 (96)
224 1m1j_C Fibrinogen gamma chain; 21.1 1.7E+02 0.006 22.4 5.3 23 20-42 92-114 (409)
225 4b0f_A C4B-binding protein alp 21.0 1.4E+02 0.0047 17.6 4.4 30 1-30 24-55 (65)
226 2ic6_A Nucleocapsid protein; h 20.8 1.5E+02 0.0051 17.9 5.8 12 1-15 4-15 (78)
227 2hn1_A CORA, magnesium and cob 20.8 1.4E+02 0.0048 20.3 4.4 41 11-51 186-230 (266)
228 3qao_A LMO0526 protein, MERR-l 20.7 2.2E+02 0.0076 19.8 7.0 33 17-49 81-113 (249)
229 2lf0_A Uncharacterized protein 20.6 55 0.0019 21.6 2.0 19 32-50 9-27 (123)
230 2ve7_A Kinetochore protein HEC 20.1 1.3E+02 0.0046 21.9 4.3 43 8-50 188-234 (315)
231 3o0z_A RHO-associated protein 20.0 2.2E+02 0.0075 19.5 5.9 14 29-42 65-78 (168)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=99.65 E-value=2.5e-16 Score=98.05 Aligned_cols=48 Identities=31% Similarity=0.495 Sum_probs=43.8
Q ss_pred CCccccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCC
Q psy14736 1 MGTVHTVDEMQSIL-------QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY 51 (85)
Q Consensus 1 ~~~~~~~~~lq~~l-------~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~ 51 (85)
|||+ ++||++| +++|++|++|+++|+++|++|++|+++||||||||||
T Consensus 18 mgti---~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl~p 72 (72)
T 3nmd_A 18 RGSL---RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSVIRP 72 (72)
T ss_dssp -CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-
T ss_pred CCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 8998 9999999 6788899999999999999999999999999999975
No 2
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=99.39 E-value=3.4e-13 Score=82.87 Aligned_cols=49 Identities=37% Similarity=0.584 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 5 HTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 5 ~~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
+++++|+.+|+.||+.|++||..|+++|++|++|+++||||+|||++.+
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~~~ 59 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPVPS 59 (67)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4578999999999999999999999999999999999999999998665
No 3
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=95.27 E-value=0.027 Score=34.55 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
++.|+..+..+++++.+|.++..+|..|++.+
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777778888888888888888888887
No 4
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=92.17 E-value=0.22 Score=32.52 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
|+++..|.-|+.+++++.++|++++..+|++++++
T Consensus 72 QARetL~~~le~Qi~~kr~e~~~i~~~~~~~~~~L 106 (108)
T 1ykh_A 72 QSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKL 106 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999876
No 5
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=91.57 E-value=0.71 Score=27.42 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
-++..+|-.-+..|..|-+-.....+|++.++++|.+++|+-
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 356777888999999999999999999999999999999853
No 6
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=90.12 E-value=0.51 Score=34.79 Aligned_cols=40 Identities=15% Similarity=0.388 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
++|+..+.....+.+.|...|.+...+|..|+.+|+++++
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5777778888888888999999999999999999999997
No 7
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=88.21 E-value=1.4 Score=25.23 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+..+..|+.+..+...+|..|+.++..+++.|
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666665544
No 8
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=87.80 E-value=1.4 Score=25.40 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+.....|+.+......+|..|+.++..+.++|
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666667777777777766654
No 9
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=87.72 E-value=2.1 Score=22.95 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
=..|-+.|..||++|+.|+++=+.++
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45678888999999999988766554
No 10
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=87.66 E-value=1.5 Score=25.01 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+.....|+.+..+...+|..|+.++..+++.|
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666667777666666543
No 11
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=87.01 E-value=1.6 Score=26.65 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
.......+|+.+......+|..|..+++.|++.|-
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566888999999999999999999999998874
No 12
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=86.69 E-value=3.3 Score=25.12 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY 51 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~ 51 (85)
.+|..-|-..+..|++|...+.+...+|..|+.+|.-+..-+..
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677888888999999999999999988888777765543
No 13
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=85.70 E-value=3.4 Score=23.41 Aligned_cols=39 Identities=15% Similarity=0.396 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
++|+..+.....+=..|..-|.+--.+|..|+.+||++-
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777777778888999999999999999999874
No 14
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=85.31 E-value=2.2 Score=24.82 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+.+...+.+|+.++.....+...|..+++.++.-+
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677889999999999999999999998888755
No 15
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=85.28 E-value=1.5 Score=27.41 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
.......+|+.+......+|.+|..+++.+++.|-
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556888999999999999999999999999884
No 16
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=84.08 E-value=3.2 Score=23.45 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+...+.+||.++.....+...|..++..++.-+
T Consensus 19 RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 19 KKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667799999999999999999999999988755
No 17
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=84.07 E-value=3.9 Score=24.94 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
-|+..|..+|..|+.|+..+.-+......|..+
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDE 54 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVIALKNKNTERLNDE 54 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHH
Confidence 344444555555555555554444444444433
No 18
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=83.98 E-value=1.4 Score=26.83 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 22 RELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+|...|+++++||..|..-+-.||+-+
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KL 33 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKL 33 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776666666654
No 19
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=83.95 E-value=3.9 Score=25.83 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhHhhhhccC
Q psy14736 28 VKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 28 l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
|.+-...|..|+.++.||++.+
T Consensus 64 L~e~~~kid~L~~el~K~q~~L 85 (98)
T 2ke4_A 64 IAETLSNIERLKLEVQKYEAWL 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777777777777765
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=82.97 E-value=3 Score=23.62 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
...+|..++.+..+++.+|++.|.+|
T Consensus 27 E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566666666666777777666554
No 21
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.97 E-value=5.4 Score=27.34 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..|+..+...+..|..|+.++.+|+..+..|+.++.-++
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888888888888888887776655
No 22
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=80.68 E-value=4.6 Score=23.30 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
......|+.+.++...+|..|+.|+.-+++.
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566666555555443
No 23
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=80.52 E-value=4.4 Score=30.49 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..|...|...++.|..|+..+...+..|.+|+.+|..+.+.+
T Consensus 15 ~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 15 RILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667788899999999999999999998888777644
No 24
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.45 E-value=5.6 Score=25.95 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNE---EIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~---eI~eL~~~ldK~rsv~ 49 (85)
.....+|..+...|.+|..++..++. .|.-|+-++|=|++=|
T Consensus 34 ~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 34 QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 78 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888888888877 7778888888887755
No 25
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=79.32 E-value=1.6 Score=22.51 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh
Q psy14736 24 LEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 24 Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
||.++...+..+++|+..+|.+
T Consensus 4 lee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 26
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=78.94 E-value=4 Score=24.91 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
.|..|.++|.+||.+|..|+..+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i 41 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVI 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999776
No 27
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=78.72 E-value=2.8 Score=25.09 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNE 33 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~ 33 (85)
++|+..|+.+|..|.+|..+|+....
T Consensus 28 ~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 28 KELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444433
No 28
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.50 E-value=5.5 Score=22.54 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+.+...+.+|+.+......+...|..++..++.
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888888887765
No 29
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=78.24 E-value=5.6 Score=22.62 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+.+...|.+|+.++.....+...|..++..++.-+
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777899999999999999999999999887644
No 30
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=77.36 E-value=4.6 Score=22.49 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhHhh
Q psy14736 15 QAKESKIRELEEKVK-VQNEEIVQLRSHLDK 44 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~-ekd~eI~eL~~~ldK 44 (85)
..|.++++++.++|. -|++.|..++++|.+
T Consensus 11 ~~KqEIL~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 11 RVKQELLEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888884 578888888888865
No 31
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=76.01 E-value=2.6 Score=26.72 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+...|+.++.+...+|..++++++.+++
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3467888888889999999999999997
No 32
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=75.75 E-value=6.7 Score=20.46 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+.+..+++|-.+..+.++++..|++-|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 456677788888888888888777654
No 33
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=75.67 E-value=8.6 Score=21.63 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
+-+|..+.-..-..|.+|+..-++++.||..|+.-|..
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 45677777777889999999999999999999977643
No 34
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=74.20 E-value=8.6 Score=21.96 Aligned_cols=33 Identities=9% Similarity=0.201 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+.+...|.+|+.+......+...|+.+++.++.
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667888888888888888888888877654
No 35
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.37 E-value=9.1 Score=22.78 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~ 40 (85)
.++..|.+||.++.+.+.+...|..
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~ 50 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTL 50 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777766544444333
No 36
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=72.02 E-value=12 Score=23.57 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhh
Q psy14736 23 ELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 23 ~Le~~l~ekd~eI~eL~~~ldK 44 (85)
..-+-.+..++||..|+.+|+.
T Consensus 65 ~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 65 THRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344467789999999999975
No 37
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=71.29 E-value=12 Score=21.43 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+...+..|+.++.+...+..+|..+++.++
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 38
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=70.83 E-value=8.2 Score=23.67 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
.-+..|..|++.+...+.++.+++.+|-.
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555543
No 39
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=70.62 E-value=12 Score=22.19 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.|...+..+..|+........++..|+.+++.+++
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777777777776654
No 40
>1sb0_B Protein C-MYB; CREB-binding protein, transcriptional activation, constitutive activation, LXXLL motif, KIX; NMR {Mus musculus} PDB: 2agh_A
Probab=70.32 E-value=5.7 Score=19.60 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14736 17 KESKIRELEEKVKVQNEEIVQ 37 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~e 37 (85)
++.+|++||..|..-++|++.
T Consensus 1 kEkriKElELLLMS~E~Ev~~ 21 (26)
T 1sb0_B 1 KEKRIKELELLLMSTENELKG 21 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhhHHHHcc
Confidence 467899999999999988875
No 41
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=70.16 E-value=14 Score=26.08 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+......+..++.++...+.+|..++..+++|+.-+
T Consensus 47 ~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 47 AILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777777777777777777777644
No 42
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=70.03 E-value=9.8 Score=23.54 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+.|..|..+|..+|.+|..|+++|
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 678889999999999999999887
No 43
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=68.37 E-value=15 Score=21.31 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
+..|.++.-+.-..|..|+..-.++|.||..|..-|.
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778899999999999999999987664
No 44
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=68.26 E-value=11 Score=23.81 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHhHhhhhc
Q psy14736 16 AKESKIRELEEKVKVQNEEIV----------QLRSHLDKFQS 47 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~----------eL~~~ldK~rs 47 (85)
..+..|+.|++++...|..+. -|.++|+.|.+
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554443 34456666654
No 45
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=68.13 E-value=10 Score=22.87 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+...+..++.++..+...+..+..++.++.+++.
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555555555544443
No 46
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.09 E-value=12 Score=19.90 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
+.+..+++|..+..+.++++..|++.+..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 45667888888888888888888877643
No 47
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.63 E-value=13 Score=28.61 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
.+++..++.+.+.++.|+.+....+.++..++.++..++++
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~ 68 (405)
T 4b4t_J 28 QETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEP 68 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56666677788888999999999999999999999998874
No 48
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=67.02 E-value=14 Score=21.22 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 12 SILQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 12 ~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
.-+...+..+..|+.+......+|..|+.++-
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677888899999999999999988763
No 49
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=66.17 E-value=12 Score=19.46 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+.+..+++|-.+..+.++|+..|++-|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 345567777777777777777777654
No 50
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=66.15 E-value=12 Score=19.21 Aligned_cols=28 Identities=11% Similarity=0.295 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIV 36 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~ 36 (85)
.|.+.++.....+.+|++++|..++.++
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666777777777777766554
No 51
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.14 E-value=14 Score=24.42 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
++.....|..|...|....+++.+|+.+..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 455667777888888888888888887765
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=66.04 E-value=23 Score=23.35 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
+..++++++++.+...++.+|+.++-++
T Consensus 102 ~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 102 QIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 53
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=65.98 E-value=21 Score=22.10 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+....|-.++..++++|..|+.+++.++.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888888888887764
No 54
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=65.64 E-value=20 Score=21.81 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
+...++...+..++.++..+...+..+..+..++.+++..+.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667778888888899999999999999888887663
No 55
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=65.06 E-value=22 Score=21.96 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.....+++.+++..+...+|..|+.++.-||+
T Consensus 42 ~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 42 NFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455666666777777777777777777663
No 56
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=64.97 E-value=22 Score=22.01 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.-..|-+.+..++++|..|+.+...++.
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888887776654
No 57
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=64.84 E-value=17 Score=23.59 Aligned_cols=38 Identities=5% Similarity=0.199 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
..+..+.+++.++.+.+..+..|...|+.|+.++...+
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~ 136 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSAN 136 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34456667777777777777777888888887764443
No 58
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=63.93 E-value=11 Score=20.96 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
.|..|+.++...+..|..|++.|
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666666544
No 59
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.83 E-value=16 Score=27.22 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+...+|++||.++.+.+.+|.++..++...+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 440 QGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445788888888888888888877776543
No 60
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=63.25 E-value=22 Score=21.34 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+..+.-++.-|++.+..|.+-+.+||+++--+
T Consensus 18 ~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 18 ELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555666666544
No 61
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=63.02 E-value=24 Score=22.29 Aligned_cols=40 Identities=25% Similarity=0.422 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHhhhhccC
Q psy14736 10 MQSILQAKESKIRELEEKVKVQN---EEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd---~eI~eL~~~ldK~rsv~ 49 (85)
-..+|..+...|++|...+..++ +.|.-|+-+++=|++=|
T Consensus 14 aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF 56 (94)
T 3jsv_C 14 AEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 56 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888887777 77888888888888766
No 62
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=62.80 E-value=22 Score=21.18 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
..--+-|..|+.++.....++..|+..+...+++
T Consensus 46 ~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~~ 79 (82)
T 1am9_A 46 RKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSL 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444578899999999999999999888877654
No 63
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=62.53 E-value=21 Score=20.99 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
...-|+..+.+.+..|.+|+..++.+..
T Consensus 40 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 67 (99)
T 1q08_A 40 SKGIVQERLQEVEARIAELQSMQRSLQR 67 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444443
No 64
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=62.50 E-value=18 Score=28.00 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
|...+...+..|+.|+..+...+..|..|+..+..+.+.+
T Consensus 96 ~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 96 YENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3344456677888999999999999999998888777644
No 65
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=61.87 E-value=16 Score=24.56 Aligned_cols=35 Identities=6% Similarity=0.064 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+...|...+..|+.-|..+++++.+++++||..
T Consensus 96 ~kRK~lV~~iQ~~L~~~D~l~~~~~~~~~~~q~~~ 130 (135)
T 1i6z_A 96 LKRKNLVKKVQVFLAECDTVEQYICQETERLQSTN 130 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 47788899999999999999999999999999853
No 66
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=60.96 E-value=18 Score=23.47 Aligned_cols=40 Identities=13% Similarity=0.308 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+.+++...+.+|+.++..++..+..+..++.++.....++
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l 135 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKA 135 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666666666655544
No 67
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=60.76 E-value=23 Score=20.83 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
......+..|+.++++...++..|+.+|..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555543
No 68
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=58.93 E-value=20 Score=19.56 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..+...++|+....+.++.|.-|+++=--+|.|+
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3445556666666666666666666655555543
No 69
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=58.48 E-value=30 Score=26.90 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..++.+|...+..|+.|+..+.-.+..|.+|...+..+.+..
T Consensus 94 ~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 94 MKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666678889999999999999999999999988887765
No 70
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=58.34 E-value=18 Score=18.89 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+.+...++|-.+..+.++|+..|++-|
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456667777778888888888887655
No 71
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=58.29 E-value=25 Score=25.22 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
....|-.+|..++++|..|+.+++.++.++
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666665555443
No 72
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=58.10 E-value=20 Score=20.03 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..++.|..++.+....+..|..+++.+++-+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888877654
No 73
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=58.02 E-value=27 Score=22.56 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
...+..++.++.+.+..+..|...++.|+..+
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666544
No 74
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=57.33 E-value=20 Score=18.97 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
+.+..+++|-.+..+.++++..|++.+..
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 45667888888888888888888876643
No 75
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=56.69 E-value=36 Score=23.40 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
...|...|+.+....++++.++....-+|-.|+..-|+|..-|
T Consensus 112 k~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL 154 (170)
T 3l4q_C 112 RTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWL 154 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3567777888888899999999999999999999999998655
No 76
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.58 E-value=28 Score=21.92 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+++...+.+|+.++..++..+..+..++.++.....
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555554443
No 77
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=56.03 E-value=33 Score=23.79 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=29.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 3 TVHTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 3 ~~~~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
++|++.+++..+......++.+.......++.+..+...+..+++
T Consensus 60 ~l~~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~ 104 (192)
T 2p22_C 60 KFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARI 104 (192)
T ss_dssp GGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 356667777777666666666666656666666666666665554
No 78
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=55.94 E-value=26 Score=24.76 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhHhhh
Q psy14736 27 KVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 27 ~l~ekd~eI~eL~~~ldK~ 45 (85)
+|+.++.+|..|+.+|...
T Consensus 35 ql~~k~~ei~~L~~ql~sl 53 (190)
T 4emc_A 35 KLDTKATEIKQLQKQIDSL 53 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554443
No 79
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=55.90 E-value=27 Score=22.07 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.+-..|..|..+|..+..++..|+..++.+..
T Consensus 51 eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~ 82 (107)
T 2no2_A 51 EQLEVLESLKQELATSQRELQVLQGSLETSAQ 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777888888888888888888777654
No 80
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=55.82 E-value=36 Score=22.59 Aligned_cols=44 Identities=20% Similarity=0.355 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 6 TVDEMQSILQAKESKIREL-------EEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 6 ~~~~lq~~l~~kd~~I~~L-------e~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+..+|+...+..-..|..| |..+..++-+|.+|+..+.-++.-|
T Consensus 59 s~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gKf 109 (133)
T 1j1d_C 59 GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKF 109 (133)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHccc
Confidence 3467777776555555554 4556777899999999998888755
No 81
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=55.60 E-value=24 Score=22.43 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
++....++....+.|..|..+|..||
T Consensus 91 ~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 91 YEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445555566777777777766
No 82
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=55.29 E-value=41 Score=22.05 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
.++.|+.++.+++.+|..|+.+|-
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 83
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=54.71 E-value=37 Score=24.47 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---Hhhhh
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSH---LDKFQ 46 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~---ldK~r 46 (85)
..++...+......+.+++.++.+.++++..|... ++.+.
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 46777777778888888888888888888888888 66554
No 84
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=54.11 E-value=34 Score=26.14 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQ 37 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~e 37 (85)
.|...|....+.+++|+.++.+..+++..
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~ 35 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELET 35 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333444444444333333333
No 85
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=53.22 E-value=14 Score=22.94 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
..+++|+..+...+.+|..++..+ .+..+
T Consensus 2 ~~~e~l~~~~~~l~~~l~~~~~~~-~~~~~ 30 (148)
T 3pbf_A 2 YLDEELQTELYEIKHQILQTMGVL-SLQGS 30 (148)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH-HHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 356778888888888888888888 44443
No 86
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.86 E-value=35 Score=20.44 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+..+..|..|+..|.+-..+=..++.+|.+|..+|
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666555555555555555555443
No 87
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=52.51 E-value=29 Score=22.07 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~ 39 (85)
..++...++...+.++.|...+...+.++...+
T Consensus 84 ~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 84 AEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355556666666677777777777777776544
No 88
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=52.43 E-value=38 Score=20.73 Aligned_cols=43 Identities=14% Similarity=0.349 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+..|..++.+....|.+...+-.....+..+....|.+|+.-+
T Consensus 26 le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l 68 (86)
T 3nr7_A 26 LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREML 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677767777777776666666666777777777776533
No 89
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=51.55 E-value=38 Score=20.56 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
...+..|+.|+..|.+-..+=..++.+|.+|..+|
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666555555555555555555443
No 90
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=50.72 E-value=33 Score=20.95 Aligned_cols=38 Identities=34% Similarity=0.407 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hHhhhhccCCCCC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRS-----HLDKFQSVFPYHN 53 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~-----~ldK~rsv~~~~~ 53 (85)
-..+.|.+|+.++...+.|-.-|+. .|++|++-+.+..
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~q~q~~l~~~~ 61 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEE 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCCCSSSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhccCCCC
Confidence 3456788888888888888887775 4677887775544
No 91
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=50.41 E-value=42 Score=20.71 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhh
Q psy14736 26 EKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 26 ~~l~ekd~eI~eL~~~ldK~r 46 (85)
.+|+....+|..|..+|+..+
T Consensus 51 ~el~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666544
No 92
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=50.10 E-value=26 Score=18.25 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+.+..+++|-.+..+.++++..|++-|
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345566666666777777777776544
No 93
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.04 E-value=29 Score=26.40 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=7.4
Q ss_pred HHHHHHHHhHhhhhccC
Q psy14736 33 EEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 33 ~eI~eL~~~ldK~rsv~ 49 (85)
.++..++.++.++...+
T Consensus 565 ~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 565 QETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33334444444444444
No 94
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=49.83 E-value=24 Score=23.79 Aligned_cols=38 Identities=13% Similarity=0.409 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHN 53 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~~ 53 (85)
+..+.+.+.+.-+.+-+.+|.+|..+|.++++..|+.+
T Consensus 92 ~e~~~~~~a~~~~~~s~~ri~~lekeL~~i~~~~P~~~ 129 (160)
T 2cly_B 92 EEKEDVKSCAEFLTQSKTRIQEYEKELEKMRNIIPFDQ 129 (160)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHh
Confidence 44566777778888889999999999999999887665
No 95
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.92 E-value=34 Score=20.46 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~l 42 (85)
++.|+.+|...+.+|..|..+|
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 96
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.48 E-value=30 Score=23.52 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYH 52 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~ 52 (85)
.-+...+.|+.++.+++..|.-|+.+|.-+.+|+-.-
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999998543
No 97
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=48.42 E-value=37 Score=19.50 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
+.....++.+....|+.|+.+|+.+
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444444444444443
No 98
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=48.29 E-value=52 Score=21.10 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 6 TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 6 ~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
|.--++..|.+....|.+|..++.+....+..|..+=|
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888888888888877776655
No 99
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.01 E-value=52 Score=25.15 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 22 RELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+.++.++.....++..++++++.+++
T Consensus 66 e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 66 DYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444555666677778888888776
No 100
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=47.88 E-value=36 Score=19.12 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.|..|...++.....|..|.+.++..++
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666554
No 101
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.42 E-value=49 Score=25.14 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 22 RELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
.++++.+++....+.+++.++...
T Consensus 547 ~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 547 IALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHH
Confidence 344444444444444444444443
No 102
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=47.38 E-value=45 Score=20.20 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14736 24 LEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 24 Le~~l~ekd~eI~eL~~ 40 (85)
|..+|+....+|+.|+.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRG 41 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRG 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333344444433333
No 103
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=46.36 E-value=47 Score=24.87 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
+.....+..++..|++....|.+|...
T Consensus 29 ~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 29 QELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 104
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=45.96 E-value=31 Score=17.96 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+.+..+++|-.+..+.++++..|++-|
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345566666666666677777666544
No 105
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=45.87 E-value=44 Score=19.65 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+.-+...+.....++.++.....-|..|..+||++..
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555566666666544
No 106
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=45.37 E-value=6.8 Score=28.61 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=10.2
Q ss_pred ccccceeeecCCC
Q psy14736 71 KQRAQGISAEHPG 83 (85)
Q Consensus 71 ~kraqgISAEP~~ 83 (85)
+.||.||||||..
T Consensus 94 ~~~r~~vsae~~~ 106 (381)
T 4din_B 94 RRRRGGVSAEVYT 106 (381)
T ss_dssp SCCCCCCBCCCCC
T ss_pred CCCCCeEecccCC
Confidence 4566999999964
No 107
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=45.13 E-value=32 Score=17.81 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+.+..+++|-.+..+.++++..|++-|
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345556666666666667776666544
No 108
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=44.88 E-value=39 Score=20.49 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.+-.++.+|..+|..|.+|..=||.+-+-+
T Consensus 22 l~lk~~~~l~~k~~~v~eLEdYID~LLvRV 51 (75)
T 3tso_C 22 ELVKHKELLRRKDTHIRELEDYIDNLLVRV 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777888888887777765433
No 109
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=44.82 E-value=12 Score=28.16 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
...++.|..|+..|...++.|.+|...+..+...+
T Consensus 14 l~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 14 LTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888888888888888887777766543
No 110
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=44.07 E-value=39 Score=18.83 Aligned_cols=27 Identities=4% Similarity=0.231 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
=++.+...+.....++.+|+.++..+.
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666665543
No 111
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=44.00 E-value=33 Score=21.21 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14736 21 IRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~ 39 (85)
|..|+.+++..+.+|.++.
T Consensus 10 i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 112
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=43.95 E-value=39 Score=21.92 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVK-VQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~-ekd~eI~eL~~~ldK~rsv~ 49 (85)
..|+..|+...+.++.|+..+. +..++-.+|..-|+|.+++-
T Consensus 10 ~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~as 52 (122)
T 3viq_A 10 LKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAA 52 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 4555666666666666665542 22233457888899998865
No 113
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=43.74 E-value=23 Score=22.06 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhc
Q psy14736 27 KVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 27 ~l~ekd~eI~eL~~~ldK~rs 47 (85)
+|...+..|+.|+..|+.++.
T Consensus 5 ~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 5 KLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444443
No 114
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=43.62 E-value=49 Score=25.04 Aligned_cols=42 Identities=17% Similarity=0.414 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..|+..|+.+...++++++++....-++-+|+..=|+|--.+
T Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L 263 (373)
T 3hhm_B 222 RRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWL 263 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH
Confidence 567777888888889999999999999999999888886544
No 115
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=43.43 E-value=55 Score=20.01 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhHhhhhc
Q psy14736 31 QNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 31 kd~eI~eL~~~ldK~rs 47 (85)
++.++..|+.+..-+++
T Consensus 53 L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 53 LERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666666555544
No 116
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.28 E-value=64 Score=20.71 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14736 18 ESKIRELEEKVKVQNEEIV 36 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~ 36 (85)
+..|.+|+..++..+..|.
T Consensus 94 ~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 94 KNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333
No 117
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=43.25 E-value=15 Score=20.54 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14736 19 SKIRELEEKVKVQNEEIVQL 38 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL 38 (85)
..|..||.++++.+..|..|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554443
No 118
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=43.21 E-value=73 Score=22.41 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
.+|...|..++..|..|..+|+...+.+...+..+.|
T Consensus 30 ~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 30 FVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 3455566777888888888877777777655554443
No 119
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=43.17 E-value=47 Score=21.63 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.....+..++..+.+.|.+|......||-|.-
T Consensus 72 ~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ 103 (119)
T 3etw_A 72 QYQELASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888889999999999998888864
No 120
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=43.08 E-value=16 Score=22.77 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
+|.+|=.-|-.|++.+.+.+..+.+|+++++.
T Consensus 52 LLEKKWTSViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 52 LLEKKWTSVIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556778899999999999999988864
No 121
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=42.05 E-value=41 Score=18.21 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhH
Q psy14736 27 KVKVQNEEIVQLRSHL 42 (85)
Q Consensus 27 ~l~ekd~eI~eL~~~l 42 (85)
+|.++++++..|+.+|
T Consensus 14 eleernaelknlkehl 29 (46)
T 3he4_B 14 ELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHhHHHHH
Confidence 3444555555555555
No 122
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.73 E-value=41 Score=25.00 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhHhh
Q psy14736 25 EEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 25 e~~l~ekd~eI~eL~~~ldK 44 (85)
++++.|.+++|.+|.-+|.-
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655543
No 123
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=41.66 E-value=66 Score=20.41 Aligned_cols=40 Identities=30% Similarity=0.320 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhh
Q psy14736 6 TVDEMQSILQAKESKIRELE-------EKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 6 ~~~~lq~~l~~kd~~I~~Le-------~~l~ekd~eI~eL~~~ldK~ 45 (85)
+..+|+...+..-..|..|| ..+..++-+|.+|+..+.-+
T Consensus 43 ~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 43 NEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 34677777766666665555 45677788999999887666
No 124
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=41.18 E-value=41 Score=22.19 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.-+.+.+|...+++.++.|..|..++.++..
T Consensus 59 eLe~leeL~~ki~eL~~kvA~le~e~~~~e~ 89 (125)
T 2pms_C 59 KLSKLEELSDKIDELDAEIAKLEDQLKAAEE 89 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3345688888999999999999999998775
No 125
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.92 E-value=53 Score=19.16 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+|..--.-|..|+.++.....++.+|+.+...++.-+
T Consensus 41 iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 41 ILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455799999999999999999998888776543
No 126
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.80 E-value=59 Score=19.64 Aligned_cols=29 Identities=7% Similarity=0.228 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
......|..|...+...+.++..|..++.
T Consensus 74 ~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 74 NNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555544
No 127
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.71 E-value=57 Score=19.41 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 5 HTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 5 ~~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
|.++++...++.....+..+...+..++.++.++..-++-+..
T Consensus 1 ~~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~ 43 (107)
T 1fxk_A 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555555555666666666666666666666666665555554
No 128
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=40.69 E-value=64 Score=23.90 Aligned_cols=35 Identities=29% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+..+..|.+++..+++-.+-|..|+..|++.-+|+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 409 (463)
T 2xz3_A 375 QRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVV 409 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677799999999999999999999999988887
No 129
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=40.47 E-value=66 Score=20.09 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
++.|+..+++-+..+..+...+......|.++..-++-+..
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788888888888888888887777777777766666555
No 130
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=40.37 E-value=72 Score=20.51 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCCCC
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYH 52 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~~~ 52 (85)
+..+.-|+..+.+.+++|.+|+..++.+...+...
T Consensus 94 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 94 LHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777888888877777766655433
No 131
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=39.92 E-value=41 Score=17.52 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+.+..+++|-.+..+.++++..|++-|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 455667777778888888888887655
No 132
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=39.73 E-value=46 Score=18.08 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~ 39 (85)
.||-+-+..-|..|..-++++.+...-..+|.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544444444455555554444444444443
No 133
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.13 E-value=69 Score=19.64 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 25 EEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 25 e~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
+++|.+-+....+|..++.+.+.-+
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777766543
No 134
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=37.45 E-value=71 Score=19.59 Aligned_cols=41 Identities=22% Similarity=0.456 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhHhhhhcc
Q psy14736 8 DEMQSILQAKESKIRELEEKV-----------KVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l-----------~ekd~eI~eL~~~ldK~rsv 48 (85)
.||...++...+.|.+|.+-+ ..+...+.+++.+|..+++.
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433 34555556666666655543
No 135
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=37.12 E-value=81 Score=20.13 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
|...|...++....+..+..++-.++..++..++.
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~ 69 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSI 69 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666666666655554444443
No 136
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=36.98 E-value=54 Score=20.21 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 23 ELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 23 ~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.|+.++..+++++..|..+|..+.+-+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555554433
No 137
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=36.89 E-value=88 Score=20.52 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKES----KIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~----~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..|..-|..... .+.+|+-+|...+..++..-.++..+|.-.
T Consensus 56 ~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 56 MALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444533333 366666666666666666666666666544
No 138
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=36.41 E-value=25 Score=18.25 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
...|..|+.+++..++.+..++.+|
T Consensus 10 KkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 10 RRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467788888888888888887665
No 139
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=36.40 E-value=64 Score=18.75 Aligned_cols=27 Identities=15% Similarity=0.275 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
+.--+-|..|+.++.....++.+|+.+
T Consensus 53 ~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 53 DKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344446888888888888888877753
No 140
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.88 E-value=1.1e+02 Score=21.29 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+..|..+++.+......+..|..+++.++
T Consensus 48 E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k 76 (189)
T 2v71_A 48 EAQLVQAEQRNRDLQADNQRLKYEVEALK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555555444
No 141
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.01 E-value=1e+02 Score=20.83 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 14 LQAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 14 l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
|......+..++.++...+.+|.+....++-+
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l 101 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERL 101 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 142
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=34.86 E-value=18 Score=23.42 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
.+-.++.+|..+|..|.+|..=||++-.-
T Consensus 54 lllk~e~~l~~kd~~IrELEDYID~LLvR 82 (107)
T 2gzd_C 54 ELVKHKELLRRKDTHIRELEDYIDNLLVR 82 (107)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888899999999888887653
No 143
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=34.61 E-value=13 Score=23.62 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhHhhhhccC
Q psy14736 15 QAKESKIRELEEKVKVQN---EEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd---~eI~eL~~~ldK~rsv~ 49 (85)
..+...|++|...+..++ +.|.-|+.+.|=|++=|
T Consensus 34 ~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF 71 (96)
T 3fx0_A 34 VAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 71 (96)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456677888888777777 88899999999998876
No 144
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=34.58 E-value=1e+02 Score=21.48 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
....+..|..+.+..+..+..|..++++|-+
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777788888888888888887754
No 145
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=34.56 E-value=57 Score=17.61 Aligned_cols=24 Identities=8% Similarity=0.293 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
++-+.||++++..+.-+..|...+
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554443
No 146
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=34.53 E-value=81 Score=19.36 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 23 ELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 23 ~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.++.++.....-|..+..+||++..
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444455555543
No 147
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=34.49 E-value=78 Score=19.22 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
-..|-+++..++++|..|+.+-..+.
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777666644443
No 148
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.38 E-value=44 Score=16.26 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14736 22 RELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~ 40 (85)
++|=++|...++.++.|+.
T Consensus 4 delykeledlqerlrklrk 22 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555553
No 149
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.32 E-value=82 Score=19.37 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
..-..|..|+.++.....+..+|+.-.
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555433
No 150
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.31 E-value=1e+02 Score=23.29 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=5.6
Q ss_pred HHHHHHHhHhhhh
Q psy14736 34 EIVQLRSHLDKFQ 46 (85)
Q Consensus 34 eI~eL~~~ldK~r 46 (85)
+-+.|.+++..++
T Consensus 46 ~rr~l~n~~~elk 58 (403)
T 4etp_A 46 VRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 3334444444443
No 151
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=33.96 E-value=71 Score=20.57 Aligned_cols=42 Identities=12% Similarity=0.317 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHhhhhc
Q psy14736 6 TVDEMQSILQAKESKIRELEEKVKVQ---NEEIVQLRSHLDKFQS 47 (85)
Q Consensus 6 ~~~~lq~~l~~kd~~I~~Le~~l~ek---d~eI~eL~~~ldK~rs 47 (85)
+++.|...+++.+..+..+...+... +..|.+...-++-+..
T Consensus 10 ~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~ 54 (151)
T 2zdi_C 10 ELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKK 54 (151)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777777777 7777777766665543
No 152
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=33.96 E-value=58 Score=20.23 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQN 32 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd 32 (85)
-+|+++++.|...|..|..+|.+-.
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~ 49 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAI 49 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887776543
No 153
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=33.78 E-value=72 Score=18.55 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
...+..+..++.++.+.+..+..|...++.|..
T Consensus 42 ~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 74 (99)
T 1q08_A 42 GIVQERLQEVEARIAELQSMQRSLQRLNDACCG 74 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556667777777777777777777777664
No 154
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=33.72 E-value=53 Score=17.06 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+.+..+++|-.+..+.++++..|++-|
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 455667777778888888888877654
No 155
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=33.50 E-value=84 Score=23.32 Aligned_cols=43 Identities=26% Similarity=0.509 Sum_probs=26.7
Q ss_pred CccccHHHHHHHHHHH----HHHHHHHHH------HHHHHHHHHHHHHHhHhhhhc
Q psy14736 2 GTVHTVDEMQSILQAK----ESKIRELEE------KVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 2 ~~~~~~~~lq~~l~~k----d~~I~~Le~------~l~ekd~eI~eL~~~ldK~rs 47 (85)
||| ++||..|+.- ...+-..+. .++.-|+.+..|+++||..=|
T Consensus 213 ~tL---RELqDtL~aagd~lqa~Ll~IQ~~~~~~~~l~~vd~l~~~Lq~klDRI~s 265 (287)
T 1t98_A 213 GTL---RELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIIS 265 (287)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhH---HHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHH
Confidence 455 9999999522 222222222 234558889999999998644
No 156
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=33.21 E-value=29 Score=20.33 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14736 20 KIRELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~ 40 (85)
.+..|+.+|...+..+.++..
T Consensus 49 ~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 456666666666666665543
No 157
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.04 E-value=85 Score=19.17 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+++.-....+..=..|..++.....++..|+..|..+..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 344444555666677777778888888888877766444
No 158
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=32.92 E-value=93 Score=19.59 Aligned_cols=30 Identities=27% Similarity=0.225 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
...-|+..+.+.+++|.+|+..++.+...+
T Consensus 80 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 80 VKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665555554443
No 159
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=32.81 E-value=37 Score=24.89 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14736 20 KIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~ 39 (85)
.|+.|+.+..+..++|.+|.
T Consensus 186 eie~L~~~~~~L~eEi~~Le 205 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLE 205 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 160
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.73 E-value=43 Score=16.43 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
|+.||-+.+..+..|..|+..+-.
T Consensus 2 idalefendaleqkiaalkqkias 25 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHHHH
Confidence 345666666666677777665544
No 161
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=32.56 E-value=88 Score=19.19 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
+...|++.+..|++-++.|.++.-|+
T Consensus 47 rk~~i~~ie~~ldEA~eLl~qMelE~ 72 (102)
T 2qyw_A 47 KKKLVRDFDEKQQEANETLAEMEEEL 72 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555444333
No 162
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=32.55 E-value=44 Score=22.82 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+.+++.++.+....+..|...++.++
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (278)
T 1r8e_A 88 ERQIREKLDFLSALEQTISLVKKRMK 113 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333
No 163
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=32.45 E-value=85 Score=19.00 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv 48 (85)
+..+..|.+|+.+-++.+..|.-|+....-+-++
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888877665555444
No 164
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=31.88 E-value=93 Score=21.92 Aligned_cols=29 Identities=24% Similarity=0.490 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+..|..|+.++.+..+....++-+.+.||
T Consensus 65 ~~~l~~l~~e~~el~d~~lR~~AEfeN~R 93 (213)
T 4ani_A 65 KAQIAELEAKLSEMEHRYLRLYADFENFR 93 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 165
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=31.82 E-value=84 Score=21.14 Aligned_cols=28 Identities=7% Similarity=0.286 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
..++.|+..|..++..|.+|+..+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 7 SQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777777777777777777766555
No 166
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=31.72 E-value=1.1e+02 Score=21.90 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIV 36 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~ 36 (85)
|...|..+++.|..|.+++.+..+.+.
T Consensus 120 Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 120 LHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555566665555554444433
No 167
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=31.64 E-value=69 Score=21.59 Aligned_cols=26 Identities=8% Similarity=0.362 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQN 32 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd 32 (85)
++.|...|-.++..|.+|++++.+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 9 LSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566667777778888887777666
No 168
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.43 E-value=99 Score=19.44 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
-...|+.|+.++...+.++..|...|..
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3446777777777777777777755543
No 169
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.28 E-value=96 Score=19.93 Aligned_cols=18 Identities=11% Similarity=0.344 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhHhhhh
Q psy14736 29 KVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 29 ~ekd~eI~eL~~~ldK~r 46 (85)
..+..++..|+..|.-|+
T Consensus 78 ~~R~~~Vsalq~KiaeLK 95 (107)
T 2k48_A 78 QNRRAAVSTLETKLGELK 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555444
No 170
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=30.99 E-value=60 Score=16.84 Aligned_cols=23 Identities=22% Similarity=0.344 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~ 40 (85)
+..+++|-.+..+.++++..|++
T Consensus 7 EdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHH
Confidence 34455555555555555555554
No 171
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=30.81 E-value=1e+02 Score=19.50 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
-|..-|......-.+-.+++.+.+.+|..|+-+|...
T Consensus 50 tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 50 TLQESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333334455666666666666665543
No 172
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.75 E-value=76 Score=20.37 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
+.|..|..++.+.+.+|..|+.++-.+
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554433
No 173
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.51 E-value=1.4e+02 Score=20.78 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 13 ILQAKESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 13 ~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
.|.+-+..++.|...+.....++..++..
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554444444444433
No 174
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=30.37 E-value=63 Score=16.83 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.++..|.+|--....+.+.+.+|.|+|.
T Consensus 10 klravenelhynkslleevkdelqkmrq 37 (38)
T 1c94_A 10 KLRAVENELHYNKSLLEEVKDELQKMRQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 3566777888888888888888888764
No 175
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=29.89 E-value=1.2e+02 Score=21.66 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 11 QSILQAKESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
...+...+.+|.+++.++...+.++..+...
T Consensus 225 ~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 225 GKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666655555444
No 176
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=29.86 E-value=89 Score=18.44 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
........+..+++....++.+|+..|
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444
No 177
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=29.67 E-value=1.3e+02 Score=21.35 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~ 39 (85)
.....++..|-..|..||.+|.+++
T Consensus 146 ~~l~~q~~~L~~lL~~KD~eI~~y~ 170 (235)
T 2qm4_A 146 LALQCQVRELATLLHMKDLEIQDYQ 170 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888899999999998855
No 178
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.97 E-value=1e+02 Score=18.90 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
..|....++|...++.|...+..|.++
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555444
No 179
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=28.85 E-value=49 Score=20.00 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
...|+..+...+++|.+|+..++.+..
T Consensus 76 ~~~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 76 RAHLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665555443
No 180
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.58 E-value=1.3e+02 Score=24.47 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
.+|+.|+.-|.++-.+|+.|..-||
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544433
No 181
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=28.16 E-value=24 Score=19.97 Aligned_cols=18 Identities=22% Similarity=0.518 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14736 20 KIRELEEKVKVQNEEIVQ 37 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~e 37 (85)
.|..|+.+|.+.+..|..
T Consensus 59 ~~~~L~~ri~~LE~~l~~ 76 (81)
T 1hwt_C 59 ELKKLRERVKSLEKTLSK 76 (81)
T ss_dssp HHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 182
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=27.75 E-value=1.5e+02 Score=20.31 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+..+..+..|+.+....+..|..|+.+.+|.+.
T Consensus 59 ~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e 91 (174)
T 2p22_A 59 NHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQ 91 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888888888886666554
No 183
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.74 E-value=82 Score=17.34 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
.+.+..|+.||.+|..-......+..+||.
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555666665555555555555655554
No 184
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=27.69 E-value=1.5e+02 Score=20.31 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=26.5
Q ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14736 6 TVDEMQSIL-QAKESKIRELEEKVKVQNEEIVQLRSH 41 (85)
Q Consensus 6 ~~~~lq~~l-~~kd~~I~~Le~~l~ekd~eI~eL~~~ 41 (85)
++.|+.... +..+..+..|...|+.++.-+.+|+..
T Consensus 134 Tv~~i~~E~~rk~~~lv~~L~~~ie~kn~~l~ele~k 170 (172)
T 4e8u_A 134 TIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEEL 170 (172)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555444 566778888998888888888888754
No 185
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=27.65 E-value=66 Score=16.26 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~l 42 (85)
|..|..++.....+|..|+=++
T Consensus 4 iaalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554444
No 186
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=27.65 E-value=1.3e+02 Score=19.49 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
...+..++.++++..+++.+|..+++..|
T Consensus 137 ~~~~~~l~~~i~~L~~~l~~le~~~~~~r 165 (166)
T 3pjs_K 137 KAAEEAYTRTTRALHERFDRLERMLDDNR 165 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456667777777777777777776543
No 187
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=27.55 E-value=61 Score=19.04 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=25.9
Q ss_pred CCccccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHhhhh
Q psy14736 1 MGTVHTVDEMQSILQAKESKIREL---EEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 1 ~~~~~~~~~lq~~l~~kd~~I~~L---e~~l~ekd~eI~eL~~~ldK~r 46 (85)
||+- -++.+-|-.-..++..| |.+|..-+.+|....++|.-|.
T Consensus 1 mgsw---aefkqrlaaiktrlqalggseaelaafekeiaafeselqayk 46 (73)
T 2a3d_A 1 MGSW---AEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYK 46 (73)
T ss_dssp CHHH---HHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSS
T ss_pred CCcH---HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555 56665554444444433 4566777777777777776655
No 188
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=27.44 E-value=1.2e+02 Score=21.68 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=5.1
Q ss_pred cccHHHHHHHH
Q psy14736 4 VHTVDEMQSIL 14 (85)
Q Consensus 4 ~~~~~~lq~~l 14 (85)
+|+..+-+.+.
T Consensus 372 lPpl~EQ~~Iv 382 (464)
T 2y7c_A 372 LPPVKEQAEIV 382 (464)
T ss_dssp ECCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 35555444443
No 189
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=27.36 E-value=1.4e+02 Score=19.75 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~ 40 (85)
..|+.-++..+..|..+..+|.+.+..+.++..
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555556666666666666666666655553
No 190
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=27.23 E-value=1.2e+02 Score=18.88 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=15.0
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 1 MGTVHTVDEMQSILQAKESKIRELEEKVK 29 (85)
Q Consensus 1 ~~~~~~~~~lq~~l~~kd~~I~~Le~~l~ 29 (85)
||++ ++|....+..+..|....+.+.
T Consensus 1 lGsl---eel~~~~~~~e~~i~~~~~~~~ 26 (138)
T 4ayc_A 1 LGSM---EELNRSKKDFEAIIQAKNKELE 26 (138)
T ss_dssp CCHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666 7776666555555555444443
No 191
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=26.89 E-value=1.1e+02 Score=18.63 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
...|.+.+..|++-++.|.++.-++
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~ 61 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEV 61 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554444333
No 192
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.77 E-value=1.4e+02 Score=19.73 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKF 45 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~ 45 (85)
++|+.++..|. +.|..|+.+|++.
T Consensus 30 ~Rd~~l~~~Ee------eRi~kLk~~l~~~ 53 (153)
T 2zet_C 30 QRDFDLRRREE------ERLQGLKGKIQKE 53 (153)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HhHHHHHHhHH------HHHHHHHHHHHHH
Confidence 55655555543 4466777777766
No 193
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=26.64 E-value=1.1e+02 Score=20.48 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
+||+.+.+ .|+.+=..=+.+-+.+.++.++|++.++
T Consensus 32 eDL~~AN~----LiK~m~~~d~~r~e~~~k~~seLe~V~~ 67 (158)
T 1naf_A 32 EDLRAANK----LIKEMVQEDQKRMEKISKRVNAIEEVNN 67 (158)
T ss_dssp THHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH----HHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 56666654 2333333333444445555555555444
No 194
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=26.42 E-value=1.6e+02 Score=21.92 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.-||-.|....+.|.++...++.+..++..|+..++..+..-
T Consensus 305 ~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~ 346 (406)
T 4dyl_A 305 ESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENT 346 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 457777888889999999999999999999999998886543
No 195
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.21 E-value=64 Score=23.55 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
.....+..|..+.....+.+.+++.+|.++++-+.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555567788899999999988774
No 196
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.16 E-value=15 Score=24.64 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.-+.....|+.++.+++..|.-++.+|.-+++|+
T Consensus 100 ~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 100 AIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888899999999999999988888876
No 197
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=26.11 E-value=25 Score=26.01 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=11.2
Q ss_pred cccccceeeecCCC
Q psy14736 70 RKQRAQGISAEHPG 83 (85)
Q Consensus 70 r~kraqgISAEP~~ 83 (85)
+..||++|||||..
T Consensus 106 ~~~rr~~v~ae~~~ 119 (416)
T 3tnp_B 106 RFTRRASVCAEAYN 119 (416)
T ss_dssp TTSCCCCEECCCCC
T ss_pred cCCCccEEeccccC
Confidence 46777999999865
No 198
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.90 E-value=1.3e+02 Score=19.21 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14736 15 QAKESKIRELEEKVKVQNEE 34 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~e 34 (85)
.+....|..|+.+|++....
T Consensus 43 ~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 43 LQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777776544
No 199
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=25.45 E-value=1.1e+02 Score=18.23 Aligned_cols=27 Identities=4% Similarity=0.134 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
..-|+..+...+++|.+|+..++.+..
T Consensus 77 ~~~l~~~~~~l~~~i~~l~~~~~~l~~ 103 (109)
T 1r8d_A 77 KAALQSQKEILMKKKQRMDEMIQTIDR 103 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666655554443
No 200
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.22 E-value=90 Score=16.96 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 19 SKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 19 ~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
+.+..||.+|...+..+..|++.|.-
T Consensus 20 eelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888776643
No 201
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.13 E-value=2e+02 Score=21.65 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy14736 16 AKESKIRELEEKV 28 (85)
Q Consensus 16 ~kd~~I~~Le~~l 28 (85)
..+..|.+++.++
T Consensus 21 ~l~~~~~~~~~~~ 33 (403)
T 4etp_A 21 ALKEKIKDTELGM 33 (403)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 202
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=24.75 E-value=1.1e+02 Score=20.52 Aligned_cols=41 Identities=5% Similarity=0.149 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
++..-..+...+...+..|..-|..++.+...+++++|-++
T Consensus 96 ~~~~R~KRK~lV~~IQ~~L~~~D~l~~~i~~~~~~~~~~~~ 136 (137)
T 1t7s_A 96 AKRNREKRKTLVNGIQTLLNQNDALLRRLQEYQSVLNGDIP 136 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccC
Confidence 34444677888999999999999999988888888777543
No 203
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=24.73 E-value=1.4e+02 Score=19.07 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~ldK~rs 47 (85)
.++.|+.++.+.+..+..|...++.|..
T Consensus 88 q~~~L~~~i~~l~~~l~~l~~~i~~~~~ 115 (146)
T 3hh0_A 88 QREVLLAEQERIAKVLSHMDEMTKKFQK 115 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555555555555443
No 204
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.48 E-value=1.4e+02 Score=19.00 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~ 39 (85)
...|++|+.++.....+-..|.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 205
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=24.44 E-value=1.5e+02 Score=20.38 Aligned_cols=8 Identities=0% Similarity=0.356 Sum_probs=4.6
Q ss_pred HHHHHHHH
Q psy14736 8 DEMQSILQ 15 (85)
Q Consensus 8 ~~lq~~l~ 15 (85)
+||+.+.+
T Consensus 48 eDL~~AN~ 55 (186)
T 1oxz_A 48 EDLRAANK 55 (186)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 56666554
No 206
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=24.43 E-value=99 Score=20.24 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHhh
Q psy14736 23 ELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 23 ~Le~~l~ekd~eI~eL~~~ldK 44 (85)
.|+..+..++..|.+|+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 1ca9_A 14 QLERSIGLKDLAMADLEQKVLE 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 207
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=24.40 E-value=1.2e+02 Score=18.09 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 6 TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 6 ~~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
++.|....|..=...|+.||.++..--=.+-.|++-|-|
T Consensus 27 ~vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlLAk 65 (72)
T 1k1f_A 27 SVGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAK 65 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 457888888777888999998887666556667766655
No 208
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=24.33 E-value=80 Score=20.04 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14736 20 KIRELEEKVKVQNEEIVQLRS 40 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~ 40 (85)
.|+.|+.++...+..+..|+.
T Consensus 24 ~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 24 KLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 355555555555555555554
No 209
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=24.14 E-value=1.8e+02 Score=20.68 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 10 MQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 10 lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..++||+........-++-.+.+..+.+|+.++|.+++-+
T Consensus 28 ~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l 67 (206)
T 3oa7_A 28 RTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRF 67 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445555555544444444555555666666666666544
No 210
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.78 E-value=81 Score=19.74 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 22 RELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
..|...++-..++|..++..|..-++.|
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l~~~k~~F 79 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEIQSENKAF 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777777776665554
No 211
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=23.50 E-value=1.5e+02 Score=19.17 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 22 RELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 22 ~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
.-++..+.+.+.+|.+|+..++.+...+
T Consensus 93 ~ll~~~~~~l~~qi~~L~~~~~~L~~~~ 120 (154)
T 2zhg_A 93 QLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666555555554
No 212
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=23.36 E-value=58 Score=25.69 Aligned_cols=43 Identities=23% Similarity=0.453 Sum_probs=23.6
Q ss_pred CccccHHHHHHHHH----HHHHHHHHHHHHH------HHHHHHHHHHHHhHhhhhc
Q psy14736 2 GTVHTVDEMQSILQ----AKESKIRELEEKV------KVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 2 ~~~~~~~~lq~~l~----~kd~~I~~Le~~l------~ekd~eI~eL~~~ldK~rs 47 (85)
||+ +|||..|. +....+..++... ..-|..+..|+..||..-|
T Consensus 213 ~tL---RELqdtL~aagD~lq~qLl~IQ~~~~~~~~l~~vd~l~~~Lq~kLDRI~s 265 (440)
T 3euh_A 213 GTL---RELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIIS 265 (440)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCGGGTTTHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 455 88888874 2222333333332 3346667777777776543
No 213
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.10 E-value=1.3e+02 Score=17.97 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 15 ~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
+........+..+++....+...|+.+|..++
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444555555555556666666665543
No 214
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.56 E-value=92 Score=16.10 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQL 38 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL 38 (85)
.-...|++|.++..-.+.+|+.|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 33456777777777777776654
No 215
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=22.28 E-value=1.1e+02 Score=22.65 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCC
Q psy14736 16 AKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~~ 50 (85)
........|...|...+..|..|+.+|+.++.-+.
T Consensus 159 ~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 159 AFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred hHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666666666665553
No 216
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=22.22 E-value=1.6e+02 Score=18.61 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy14736 18 ESKIRELEEKVKVQNEEIVQLRSHLDK 44 (85)
Q Consensus 18 d~~I~~Le~~l~ekd~eI~eL~~~ldK 44 (85)
+..+..++.+-.+++.-|++|+..||-
T Consensus 31 ~~~l~~l~~e~~~R~~~i~el~akidd 57 (101)
T 1d7m_A 31 NSLLASLESEGAEREKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777777777777664
No 217
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.21 E-value=1.6e+02 Score=18.88 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLD 43 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ld 43 (85)
++|+.-|..-++.+......+++...+|..++..++
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE 62 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME 62 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555444443
No 218
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.14 E-value=81 Score=18.92 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy14736 21 IRELEEKVKVQNEEIVQLRSHLDKFQ 46 (85)
Q Consensus 21 I~~Le~~l~ekd~eI~eL~~~ldK~r 46 (85)
|..+..+-...+.+|..++..++-|+
T Consensus 9 i~~l~~e~~~l~~e~dn~~~~~edfk 34 (86)
T 3swk_A 9 VDQLTNDKARVEVERDNLAEDIMRLR 34 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 219
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.98 E-value=1.4e+02 Score=22.80 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 9 ~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
|+..-+.+.+..++-|+.+.....+++..++.++.+.+.-+
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~ 86 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEV 86 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555556666666666665543
No 220
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.44 E-value=2.3e+02 Score=23.03 Aligned_cols=22 Identities=0% Similarity=0.231 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhc
Q psy14736 26 EKVKVQNEEIVQLRSHLDKFQS 47 (85)
Q Consensus 26 ~~l~ekd~eI~eL~~~ldK~rs 47 (85)
..|..++..|+++..+|.|+.+
T Consensus 131 snIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444433
No 221
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=21.42 E-value=50 Score=16.17 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14736 16 AKESKIRELEEKVKVQNEEIV 36 (85)
Q Consensus 16 ~kd~~I~~Le~~l~ekd~eI~ 36 (85)
..|..+..||+++-..+.++.
T Consensus 5 kldanvkrlekevgklegeva 25 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGEVA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred eccccHHHHHHHHhhhhhhhh
Confidence 345666777776665555543
No 222
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=21.42 E-value=1.4e+02 Score=17.93 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14736 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLR 39 (85)
Q Consensus 7 ~~~lq~~l~~kd~~I~~Le~~l~ekd~eI~eL~ 39 (85)
-.||-.++-+++..|......+.+.++=|..|=
T Consensus 16 reELi~l~lk~~~~l~~k~~~v~eLEdYID~LL 48 (75)
T 3tso_C 16 YEEVLQELVKHKELLRRKDTHIRELEDYIDNLL 48 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666665556666666666666666665543
No 223
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.14 E-value=1.6e+02 Score=18.46 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=8.8
Q ss_pred CCccccHHHHHHHHH
Q psy14736 1 MGTVHTVDEMQSILQ 15 (85)
Q Consensus 1 ~~~~~~~~~lq~~l~ 15 (85)
|+++ .+||..|-
T Consensus 4 M~~i---~eLq~e~~ 15 (96)
T 2ic9_A 4 MSTL---KEVQDNIT 15 (96)
T ss_dssp CCTH---HHHHHHHH
T ss_pred HHHH---HHHHHHHH
Confidence 6666 88888873
No 224
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.10 E-value=1.7e+02 Score=22.40 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy14736 20 KIRELEEKVKVQNEEIVQLRSHL 42 (85)
Q Consensus 20 ~I~~Le~~l~ekd~eI~eL~~~l 42 (85)
.|.+||..+...+..|..|+..+
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~ 114 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMH 114 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHH
Confidence 34444444444444444444333
No 225
>4b0f_A C4B-binding protein alpha chain; complement system, immune system; 2.80A {Homo sapiens}
Probab=20.97 E-value=1.4e+02 Score=17.55 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=18.9
Q ss_pred CCccccHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy14736 1 MGTVHTVDEMQSILQ--AKESKIRELEEKVKV 30 (85)
Q Consensus 1 ~~~~~~~~~lq~~l~--~kd~~I~~Le~~l~e 30 (85)
|--+|+..|...+|. ...-.|+.|+.+.+-
T Consensus 24 mqCLp~p~dVk~ALEvYKlsLEIe~Le~q~~k 55 (65)
T 4b0f_A 24 MQCLPNPEDVKMALEVYKLSLEIEQLELQRDS 55 (65)
T ss_dssp TTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHhHHhheeechhhHHHHHHHHHH
Confidence 456788899988885 344445555555443
No 226
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.83 E-value=1.5e+02 Score=17.92 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=7.7
Q ss_pred CCccccHHHHHHHHH
Q psy14736 1 MGTVHTVDEMQSILQ 15 (85)
Q Consensus 1 ~~~~~~~~~lq~~l~ 15 (85)
|+.+ .+|+..|-
T Consensus 4 M~~l---~eLq~e~~ 15 (78)
T 2ic6_A 4 MSTL---KEVQDNIT 15 (78)
T ss_dssp -CHH---HHHHHHHH
T ss_pred HHHH---HHHHHHHH
Confidence 5556 88887773
No 227
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=20.81 E-value=1.4e+02 Score=20.31 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHhhhhccCCC
Q psy14736 11 QSILQAKESKIRELEEKVKVQ----NEEIVQLRSHLDKFQSVFPY 51 (85)
Q Consensus 11 q~~l~~kd~~I~~Le~~l~ek----d~eI~eL~~~ldK~rsv~~~ 51 (85)
..++..-+..|+++|.++-.. -..|..|+.++-+|+..+.+
T Consensus 186 ~~~l~~i~~~id~lE~~l~~~~~~~l~~l~~lrr~l~~lrr~l~p 230 (266)
T 2hn1_A 186 FEALLKISDEIEVLEDEVVSGDSTLIGKIHSLKREILAFRNAVWP 230 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666677777666422 13566777777777766644
No 228
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=20.67 E-value=2.2e+02 Score=19.81 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy14736 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQSVF 49 (85)
Q Consensus 17 kd~~I~~Le~~l~ekd~eI~eL~~~ldK~rsv~ 49 (85)
....+..|+.++.+.+..|..|...++.+....
T Consensus 81 L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~~ 113 (249)
T 3qao_A 81 LDMQRHLLIEKKQRIETMLATLDLTIKNEKGEI 113 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344566666666777777777776666666544
No 229
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.57 E-value=55 Score=21.58 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHhhhhccCC
Q psy14736 32 NEEIVQLRSHLDKFQSVFP 50 (85)
Q Consensus 32 d~eI~eL~~~ldK~rsv~~ 50 (85)
.+||..|.+.||+|+--+.
T Consensus 9 K~Eiq~L~drLD~~~rKla 27 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQA 27 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678888888888886553
No 230
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=20.12 E-value=1.3e+02 Score=21.87 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHhhhhccCC
Q psy14736 8 DEMQSILQAKESKIRELEEKVKVQNEE----IVQLRSHLDKFQSVFP 50 (85)
Q Consensus 8 ~~lq~~l~~kd~~I~~Le~~l~ekd~e----I~eL~~~ldK~rsv~~ 50 (85)
+.|+..++...+.|.+|+++...+... ..+|+..++.|+..+-
T Consensus 188 e~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~~~LG 234 (315)
T 2ve7_A 188 ESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRLG 234 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHcc
Confidence 344444455555555555544333332 2345666666766553
No 231
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=20.00 E-value=2.2e+02 Score=19.47 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhH
Q psy14736 29 KVQNEEIVQLRSHL 42 (85)
Q Consensus 29 ~ekd~eI~eL~~~l 42 (85)
+..+.++..|+.+|
T Consensus 65 ~~Leke~~~LQa~L 78 (168)
T 3o0z_A 65 SQTDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333343333
Done!