RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14736
(85 letters)
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled
coil dimer, transferase; NMR {Homo sapiens}
Length = 67
Score = 46.0 bits (108), Expect = 1e-08
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPY 51
++ IL KE +I+ELE+++ + EEI +L+ L K QSV P
Sbjct: 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPV 57
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 35.9 bits (83), Expect = 5e-04
Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNN 63
+ + + ++ + +S IR L+E N++IV L+ + + ++ P
Sbjct: 3 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA-----QCQEPCKDTVQ 57
Query: 64 INLARPR 70
I+ +
Sbjct: 58 IHDITGK 64
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 32.5 bits (74), Expect = 0.008
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 5 HTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47
V ++ I + +++I+EL E +V + + +L+ L +
Sbjct: 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.011
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 2 GTVHTVDEMQSILQA-KESKIRELEEKVKVQNEEIVQLRSHL 42
G + +D + ++L K KI +E + + EE+ HL
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV---EGHL 1895
Score = 28.9 bits (64), Expect = 0.16
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 13/59 (22%)
Query: 30 VQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMN--NNINLARP-----------RKQRAQ 75
+ N Q++ +++K S P V + +N N+ ++ P RK +A
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Score = 26.9 bits (59), Expect = 0.70
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 22 RELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTH 59
+E Q +++ L L +F++ + N + H
Sbjct: 70 SLVEPSKVGQFDQV--LNLCLTEFENCYLEGNDI---H 102
Score = 26.6 bits (58), Expect = 1.1
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 12/37 (32%)
Query: 19 SKIRELEEKVKVQNEEIVQLRSHLDKFQSVF-PYHNP 54
S+I E K+K N F V P+H+
Sbjct: 405 SRIPFSERKLKFSNR-----------FLPVASPFHSH 430
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil,
structural genomics, berkeley S genomics center, BSGC,
dimerization; HET: MSE; 2.27A {Homo sapiens}
Length = 72
Score = 30.5 bits (68), Expect = 0.015
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 14 LQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48
L+ +++ I ELE ++ ++E I L++ LDK++SV
Sbjct: 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.12
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 45/125 (36%)
Query: 5 HTVDEMQSILQAKE-----------SKIRELEEKVKVQNEEIVQ------LRSH----LD 43
D +SIL +E S L + + EE+VQ LR + +
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 44 KFQSVF--P------YHNPVSPTHMNNNI----NLARPRK-----------QRAQGISAE 80
++ P Y + +N + N++R + + A+ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI- 155
Query: 81 HPGGG 85
G
Sbjct: 156 DGVLG 160
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase;
transcription hydrolase complex, nucleotide-binding;
2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Length = 109
Score = 28.3 bits (63), Expect = 0.17
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 17 KESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48
++++LE+KV+ + L + + + +S
Sbjct: 5 HHHRMKQLEDKVEELLSKNYHLENEVARLRSP 36
Score = 24.0 bits (52), Expect = 6.2
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRS 40
++ E K+ EL K E+ +LRS
Sbjct: 4 HHHHRMKQLEDKVEELLSKNYHLENEVARLRS 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.2 bits (63), Expect = 0.28
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44
+ ++Q + + + + L EK+ L
Sbjct: 930 IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967
Score = 25.8 bits (57), Expect = 2.0
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47
V+ + + E+KI +L+ K+ QN+E L ++ +
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI 956
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.9 bits (62), Expect = 0.35
Identities = 5/39 (12%), Positives = 18/39 (46%)
Query: 9 EMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47
++Q + KI+++E+ + + ++ +L +
Sbjct: 973 KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011
Score = 26.3 bits (58), Expect = 1.5
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47
+++ S KIRELE + E++ ++ +K +
Sbjct: 1104 LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144
Score = 26.0 bits (57), Expect = 1.7
Identities = 6/41 (14%), Positives = 19/41 (46%)
Query: 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47
++E ++ Q + + + K+K ++I+ + +K
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004
Score = 25.6 bits (56), Expect = 2.1
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47
++ + +++I EL+ ++ + EE+ + L+ S
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109
Score = 24.0 bits (52), Expect = 8.5
Identities = 7/38 (18%), Positives = 24/38 (63%)
Query: 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44
+ EM++ ++ +E + ++L+ + K ++++ L L++
Sbjct: 929 LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 27.5 bits (62), Expect = 0.45
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
V + ++ I A++ K++E E++
Sbjct: 245 VDSTAKVAEIEHAEKEKMKEKVERIL 270
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 26.9 bits (60), Expect = 0.47
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 6 TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRS 40
T +E + + ++ K + L+ ++ E+ + R+
Sbjct: 83 TAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A);
basic-helix-loop- helix-leucine zipper, transcription
factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1
PDB: 1ukl_C
Length = 82
Score = 26.2 bits (58), Expect = 0.81
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 12 SILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48
++L+ IR L+ + +E + LR+ + K +S+
Sbjct: 43 AVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSL 79
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 26.7 bits (58), Expect = 0.83
Identities = 6/43 (13%), Positives = 23/43 (53%)
Query: 5 HTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47
+ ++++ + + ++ +L E +K ++++ LR +D+
Sbjct: 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling,
TRAF, adapter protein, cell surviVal; 2.30A {Homo
sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Length = 192
Score = 26.5 bits (58), Expect = 0.92
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47
+ KI L KV+ I + +
Sbjct: 2 QDKIEALSSKVQQLERSIGLKDLAMADLEQ 31
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 26.7 bits (60), Expect = 0.98
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
+ + +MQ L +E +RE+ EKV
Sbjct: 210 ITSPGQMQLFLDQEEKMMREMAEKVI 235
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 0.99
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 9 EMQSILQAKESKIRELEEK---VKVQNEEIV-QLRSHLDKF 45
E +SI + +E + + L+E KV +E + + L+++
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW 123
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux
system, membrane, TRA protein; 2.30A {Salmonella
enterica} PDB: 3nwi_A
Length = 264
Score = 26.3 bits (58), Expect = 0.99
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 7 VDEMQSILQAKESKIRELEEKV----KVQNEEIVQLRSHLDKFQ 46
D ++ KI +LE+ + + LR L +
Sbjct: 157 TDHASEFIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMR 200
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 26.3 bits (59), Expect = 1.1
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
V + ++ + +A+ K++ K+
Sbjct: 252 VDSTAKLAQLEKAEREKMKNKIAKIS 277
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 26.3 bits (59), Expect = 1.1
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
V+ +M IL+ + + + + +K+K
Sbjct: 254 VNDYRQMDKILKEERAYLLNICKKIK 279
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation;
3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB:
1yke_A
Length = 108
Score = 26.1 bits (57), Expect = 1.1
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48
Q++ES I LEE+++ + EI ++ +
Sbjct: 72 QSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDK 105
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 26.3 bits (59), Expect = 1.1
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
+ +Q L +E+ +RE+ +K+K
Sbjct: 257 IEDPSMIQKFLAQEENMLREMVDKIK 282
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 26.3 bits (59), Expect = 1.1
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
V +M +L+ + + I L +++K
Sbjct: 245 VSDYVQMDRVLREERAYILNLVKQIK 270
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 26.3 bits (59), Expect = 1.2
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
VHTV++ Q+I+ A+ + + + EK+
Sbjct: 248 VHTVEDYQAIVDAEWNILYDKLEKIH 273
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 26.4 bits (59), Expect = 1.2
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
+ +V+E Q + ++ K +E+ + VK
Sbjct: 289 ISSVEEYQKLQTYEQDKFKEMIDDVK 314
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 26.4 bits (59), Expect = 1.2
Identities = 2/26 (7%), Positives = 14/26 (53%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
+ ++ ++ +E ++++ ++K
Sbjct: 252 ITDPAKLMEFIEQEEKMLKDMVAEIK 277
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 26.4 bits (59), Expect = 1.2
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
+ +++ I Q + +E +K+
Sbjct: 248 ITDPEKLDQIRQRESDITKERIQKIL 273
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 26.3 bits (59), Expect = 1.3
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
V V++ Q+I+ A+ I E +V+
Sbjct: 261 VEHVEDYQAIVDAEWQLIFEKLRQVE 286
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 26.0 bits (58), Expect = 1.4
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
++ +MQ L +E+ I+E +K+
Sbjct: 266 INDPTQMQKFLDEEENLIKEKVDKIL 291
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 26.0 bits (58), Expect = 1.4
Identities = 3/26 (11%), Positives = 13/26 (50%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
+ ++++ I + + + E +K+
Sbjct: 264 IDDPEQLEQIRKREAGIVLERVKKII 289
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 26.0 bits (58), Expect = 1.4
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
+ ++Q L + + +++ EK+K
Sbjct: 256 ISDPSKIQDFLNQETNTFKQMVEKIK 281
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 26.0 bits (58), Expect = 1.5
Identities = 5/26 (19%), Positives = 17/26 (65%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
V +V++ +++ + ++ K E+ ++K
Sbjct: 246 VTSVEDFKALQKYEKEKFEEMIRQIK 271
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo
sapiens} SCOP: h.1.3.1
Length = 61
Score = 25.0 bits (55), Expect = 1.6
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 7 VDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHL 42
V ++ + S +L+ +V + E+ QL+ L
Sbjct: 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic
vesicle, protein transport, transport, vacuole; 2.50A
{Saccharomyces cerevisiae}
Length = 75
Score = 25.1 bits (54), Expect = 1.9
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 6 TVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHL 42
T+ +Q L++KE +IR L+E + ++N+ +L L
Sbjct: 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDEL 55
>2iub_A CORA, divalent cation transport-related protein; membrane protein,
ION transporter; 2.9A {Thermotoga maritima} SCOP:
d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Length = 363
Score = 25.8 bits (57), Expect = 2.0
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 7 VDEMQSILQAKESKIRELEEKV-----KVQNEEIVQLRSHLDKFQ-SVFP 50
VD+ +L+ + +I LEE+V K + QL+ +L + + +++P
Sbjct: 190 VDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWP 239
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 25.5 bits (57), Expect = 2.0
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
+ ++ ILQ +E I++L E +
Sbjct: 246 ITREEDFTRILQMEEEYIQQLCEDII 271
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 25.6 bits (57), Expect = 2.1
Identities = 4/26 (15%), Positives = 16/26 (61%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
+ + D++ S L+ +E ++++ + +
Sbjct: 259 ITSPDQLMSFLEQEEKMLKDMVDHIA 284
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 2.7
Identities = 3/14 (21%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
Query: 17 KESKIRELEEKVKV 30
K++ +++L+ +K+
Sbjct: 19 KQA-LKKLQASLKL 31
Score = 23.8 bits (50), Expect = 8.4
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 8/29 (27%)
Query: 26 EKVKVQNEEIVQLRSHLDKFQSVFPYHNP 54
EK + + +L++ L + P
Sbjct: 18 EK-----QALKKLQASLKLYA---DDSAP 38
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 25.0 bits (55), Expect = 3.0
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
+ ++ ILQ +E +++ + E++
Sbjct: 263 IEKEEDWNRILQIEEEQVQLMCEQIL 288
>1zme_C Proline utilization transcription activator; complex
(transcription regulation/DNA), PUT3, Zn2Cys6,
binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces
cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Length = 70
Score = 24.3 bits (53), Expect = 3.1
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 18 ESKIRELEEKVKVQNEEIVQLRSHLD 43
+++L++ + + EE +L++ L
Sbjct: 43 TKYLQQLQKDLNDKTEENNRLKALLL 68
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 24.4 bits (54), Expect = 5.6
Identities = 4/26 (15%), Positives = 14/26 (53%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
+ +E + +++A+ I + +K+
Sbjct: 242 YKSAEEREKLVKAERKFIEDRVKKII 267
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 24.4 bits (54), Expect = 5.6
Identities = 2/26 (7%), Positives = 10/26 (38%)
Query: 4 VHTVDEMQSILQAKESKIRELEEKVK 29
+ D+ + ++ + +K+
Sbjct: 253 YSSADQRDKLAASERKFVDAKLKKII 278
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 24.4 bits (53), Expect = 6.1
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 3 TVHTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQ 46
+V V+E+ L ++ L + + Q +
Sbjct: 1883 SVLKVNELNKTLSISL--VKSLTFEKERWLNTTKQFSKTSQELI 1924
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break
repair, V(D)J recombination, protein-protein complex,
coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP:
b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Length = 213
Score = 24.4 bits (52), Expect = 6.1
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 12 SILQAKESKIRELEEKVKVQNEEIVQLRSH 41
+L K++KIR L K+ +E +
Sbjct: 182 LVLNEKKTKIRSLHNKLLNAAQEREKDIKQ 211
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA,
BHLHZ, heterodimer, transcription/DNA complex; 1.80A
{Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A
1nlw_B
Length = 83
Score = 23.5 bits (51), Expect = 7.7
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 12 SILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47
IL I+ + K ++I L+ +
Sbjct: 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQ 75
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic
domain, PSI-2, protein structure initiative; HET: MSE;
1.90A {Vibrio parahaemolyticus rimd 2210633} PDB:
3bhc_A*
Length = 252
Score = 24.2 bits (52), Expect = 7.8
Identities = 3/42 (7%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 7 VDEMQSILQAKESKIRELEEKVKVQNE------EIVQLRSHL 42
++ L E + E + + ++ ++ +
Sbjct: 146 NGKIDLYLDTIEETLNEFDVNDESTYNHIAAQKALISIKRFI 187
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 24.1 bits (52), Expect = 8.6
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 3 TVHTVDEMQSILQAKESKIRELEEKVKVQNEEIVQLR 39
T V ++Q L K REL+ K + N+++ Q+
Sbjct: 1932 TEAQVKDLQVSLAQKN---RELDVKNEQANQKLKQMV 1965
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 23.9 bits (51), Expect = 9.0
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLD 43
D+++ +A + + E+++ E L S LD
Sbjct: 119 DDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative
splicing, cell junction, cytoplasm, membrane,
phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Length = 79
Score = 23.0 bits (49), Expect = 9.2
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 8 DEMQSILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQS 47
+E Q +Q E++ ELE +++ + + R+ ++ ++
Sbjct: 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARA 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.129 0.359
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,234,723
Number of extensions: 58225
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 115
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)