RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14736
         (85 letters)



>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex
          protein MED7 {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 95

 Score = 27.1 bits (60), Expect = 0.12
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 15 QAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSV 48
          Q++ES I  LEE+++ +  EI ++     +    
Sbjct: 59 QSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDK 92


>d2zfha1 d.58.5.2 (A:63-169) Mammalian CutA-like protein {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 107

 Score = 25.5 bits (56), Expect = 0.57
 Identities = 5/28 (17%), Positives = 14/28 (50%)

Query: 2  GTVHTVDEMQSILQAKESKIRELEEKVK 29
          G +    E+  +++ + S +  L + V+
Sbjct: 49 GKIEEDSEVLMMIKTQSSLVPALTDFVR 76


>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
           {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 243

 Score = 24.2 bits (52), Expect = 2.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)

Query: 6   TVDEMQSILQAKESKIRELEEK 27
           + +E++  ++    +IREL +K
Sbjct: 222 SPEELKPYVERANERIRELLKK 243


>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 167

 Score = 24.2 bits (52), Expect = 2.5
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 5/40 (12%)

Query: 4   VHTVDEMQSILQAKE-----SKIRELEEKVKVQNEEIVQL 38
           V   D+++   Q  E     S      E V+++ +   ++
Sbjct: 114 VSDADKLELAFQGVEYSQQVSYAIRFAENVELKTDAAKEI 153


>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 120

 Score = 23.2 bits (50), Expect = 4.4
 Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 7   VDEMQSILQAKESK-IRELEEKVKVQNEEIVQLRSHLDKFQS 47
            D+  + + A+E + ++   E +      I +    L+K ++
Sbjct: 79  EDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRN 120


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 22.4 bits (48), Expect = 4.6
 Identities = 6/33 (18%), Positives = 14/33 (42%)

Query: 12 SILQAKESKIRELEEKVKVQNEEIVQLRSHLDK 44
           +L+     I+ L++      +E + L+    K
Sbjct: 26 GVLRKAIDYIKYLQQVNHKLRQENMVLKLANQK 58


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 23.2 bits (49), Expect = 6.4
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 13 ILQAKESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYH 52
          I   +  K +E E K    N+E+  +RS     +++  Y 
Sbjct: 9  ISDIRNCKSKEAEIKRI--NKELANIRSKFKGDKALDGYS 46


>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
          transferase subunit alpha, AccA {Escherichia coli
          [TaxId: 562]}
          Length = 316

 Score = 23.1 bits (49), Expect = 6.5
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 18 ESKIRELEEKVKVQNEEIVQLRSHLDKFQSVFPYHNPVSPTHM 60
          + ++  L EK      +I    + L  +Q      +P  P  +
Sbjct: 34 DEEVHRLREKSVELTRKIF---ADLGAWQIAQLARHPQRPYTL 73


>d1flja_ b.74.1.1 (A:) Carbonic anhydrase {Rat (Rattus norvegicus),
           isozyme III [TaxId: 10116]}
          Length = 259

 Score = 22.5 bits (47), Expect = 9.8
 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 30  VQNEEIVQLRSHLDKFQSVFPYHNPVSPTHMNNNINLARP 69
           +  E +      + K +S+F       P  +  N    RP
Sbjct: 209 LLKEPMTVSSDQMAKLRSLFASAENEPPVPLVGN---WRP 245


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 299,076
Number of extensions: 11446
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 33
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)