RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14737
(1171 letters)
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein,
serotonin, salivary gland, binding, ligand binging
protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB:
3q6p_A* 3q6t_A*
Length = 381
Score = 359 bits (921), Expect = e-114
Identities = 103/402 (25%), Positives = 169/402 (42%), Gaps = 39/402 (9%)
Query: 784 KELFAWKTVDFDFPDDATRAKAIENKEYIQENNLPLGL--DRWHDKLFVTIPRWKSGIVS 841
+ + WK + ++ + Y +N + D +KLF+ +PR +
Sbjct: 3 TQGYKWKQLLYN---------NVTPGSYNPDNMISTAFAYDAEGEKLFLAVPRKLPRVPY 53
Query: 842 TLNYINLT---EAKGNLSPNLKPYPSYEINNIHKKNGTTLVSGFRINVDVCDRLWMVDTG 898
TL ++ KG SP L + ++ L S ++ +D C RLW+VD G
Sbjct: 54 TLAEVDTKNSLGVKGKHSPLLNKFSGHKTGK-------ELTSIYQPVIDDCRRLWVVDIG 106
Query: 899 LADILGEGNQI---STPRIVVIDLKTDKIIKEHTIA--KEDIAAHSFFANILVDTTPN-- 951
+ G + P IV DLK + + ++F VD
Sbjct: 107 SVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166
Query: 952 TCDKAFAYIPDLGGFQMIVYDLENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTDGVFGV 1011
C + F YI + + +YD + +S+ V H F + ++ GG +++ G+FG+
Sbjct: 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAER-PTKFDYGGKEYEFKAGIFGI 225
Query: 1012 ALSPVHKEDGYRTLYFHPLSSTREFSVNTKILQNKTTASNSYYEFKVLGSRGPNSQATAE 1071
L +G R Y+ S+ + +SVNTK L+ K N ++LG+RG + A A
Sbjct: 226 TLGDRD-SEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLN----PELLGNRGKYNDAIAL 280
Query: 1072 SLDEKTGVLFYTQVNKDGVGCWNSYKHANEYSADTTDLVATDSETLVFPNDLKVDKEGYL 1131
+ D KT V+F+ + N V CWN+ K V S VF D+ VD +G L
Sbjct: 281 AYDPKTKVIFFAEANTKQVSCWNTQK---MPLRMKNTDVVYTSSRFVFGTDISVDSKGGL 337
Query: 1132 WVLSDKLPVHIHKG-LHTDEINYRIFQT-PVKDAIKGTVCDV 1171
W +S+ P D YR+ + ++AI GT CD+
Sbjct: 338 WFMSNGFPPIRKSEKFKYDFPRYRLMRIMDTQEAIAGTACDM 379
Score = 356 bits (915), Expect = e-113
Identities = 102/402 (25%), Positives = 168/402 (41%), Gaps = 39/402 (9%)
Query: 307 KELFAWKTVDFDFPDDATRAKAIENKEYIQENNLPLGL--DRWHDKLFVTIPRWKSGIVS 364
+ + WK + ++ + Y +N + D +KLF+ +PR +
Sbjct: 3 TQGYKWKQLLYN---------NVTPGSYNPDNMISTAFAYDAEGEKLFLAVPRKLPRVPY 53
Query: 365 TLNYINLT---EAKGNLSPNLKPYPSYEINNIHKKNGTTLVSGFRINVDVCDRLWMVDTG 421
TL ++ KG SP L + ++ L S ++ +D C RLW+VD G
Sbjct: 54 TLAEVDTKNSLGVKGKHSPLLNKFSGHKTGK-------ELTSIYQPVIDDCRRLWVVDIG 106
Query: 422 LADILGEGNQI---STPRIVVIDLKTDKIIKEHTIA--KEDIAAHSFFANILVDTTPN-- 474
+ G + P IV DLK + + ++F VD
Sbjct: 107 SVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166
Query: 475 TCDKAFAYIPDLGGFQMIVYDLENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTDGVFGV 534
C + F YI + + +YD + +S+ V H F + ++ GG +++ G+FG+
Sbjct: 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAER-PTKFDYGGKEYEFKAGIFGI 225
Query: 535 ALSPVHKEDGYRTLYFHPLSSTREFSVNTKILQNKTTASNSYYEFKVLGSRGPNSQASAE 594
L +G R Y+ S+ + +SVNTK L+ K N ++LG+RG + A A
Sbjct: 226 TLGDRD-SEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLN----PELLGNRGKYNDAIAL 280
Query: 595 SLDEKTGVLFYTQVNKDGVGCWNSYKHANEYSADTTDLVATDSETLVFPNDLKVDKEGYL 654
+ D KT V+F+ + N V CWN+ K V S VF D+ VD +G L
Sbjct: 281 AYDPKTKVIFFAEANTKQVSCWNTQK---MPLRMKNTDVVYTSSRFVFGTDISVDSKGGL 337
Query: 655 WVLSDKLSVHIYKG-LHTDEINYRIFQT-PVKDAIKGTVCDV 694
W +S+ D YR+ + ++AI GT CD+
Sbjct: 338 WFMSNGFPPIRKSEKFKYDFPRYRLMRIMDTQEAIAGTACDM 379
Score = 211 bits (538), Expect = 2e-60
Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 11/207 (5%)
Query: 1 MIVYDLENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTDGVFGVALSPVHKEDGYRTLYF 60
+ +YD + +S+ V H F + ++ GG +++ G+FG+ L +G R Y+
Sbjct: 183 LFIYDHKKQDSWNVTHPTFKAER-PTKFDYGGKEYEFKAGIFGITLGDRD-SEGNRPAYY 240
Query: 61 HPLSSTREFSVNTKILQNKTTASNSYYEFKVLGSRGPNSQASAESLDEKTGVLFYTQVNK 120
S+ + +SVNTK L+ K N ++LG+RG + A A + D KT V+F+ + N
Sbjct: 241 LAGSAIKVYSVNTKELKQKGGKLN----PELLGNRGKYNDAIALAYDPKTKVIFFAEANT 296
Query: 121 DGVGCWNSYKHANEYSADTTDLVATDSETLVFPNDLKVDKEGYLWVLSDKLSVHIYKG-L 179
V CWN+ K V S VF D+ VD +G LW +S+
Sbjct: 297 KQVSCWNTQK---MPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNGFPPIRKSEKF 353
Query: 180 HTDEINYRIFQT-PVKDAIKGTVCDVG 205
D YR+ + ++AI GT CD+
Sbjct: 354 KYDFPRYRLMRIMDTQEAIAGTACDMN 380
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 192 bits (488), Expect = 3e-54
Identities = 64/365 (17%), Positives = 118/365 (32%), Gaps = 58/365 (15%)
Query: 815 NNLPLGLDRWHD-KLFVTIPRWKSGIVSTLNYINLTEAKGNLSPNLKPYPSYEINNIHKK 873
+ P + D +LF+++ ++ + + L P+P N
Sbjct: 16 SLAPGNITLTPDGRLFLSLHQFY-QPEMQVAELT--------QDGLIPFPPQSGNA---- 62
Query: 874 NGTTLVSGFRINVDVCDRLWMVDTGLADILGEGNQISTPRIVVIDLKTDKIIKEHTIAKE 933
T + I D +WM+D G S P++V D +++ + +
Sbjct: 63 -IITFDTVLGIKSDGNGIVWMLDNG-------NQSKSVPKLVAWDTLNNQLSRVIYLPPP 114
Query: 934 DIAAHSFFANILVDTTPNTCDKAFAYIPDLGGFQ---MIVYDLENNESYKVKHHYFYFDP 990
++SF ++ VD F YI D +I DL+ + +V Y P
Sbjct: 115 ITLSNSFVNDLAVD-----LIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAP 169
Query: 991 LSGNYNVGGVNFQWTD----------GVFGVALSPVHKEDGYRTLYFHPLSSTREFSVNT 1040
+ + GV Q GV G+ L LY P+ ST + + +
Sbjct: 170 EDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-----ENEWLYLSPMHSTSMYRIKS 224
Query: 1041 KILQNKTTASNSYYEFKVLGSRGPNSQATAESLDEKTGVLFYTQVNKDGVGCWNSYKHAN 1100
L N + S+D+ ++ + +G
Sbjct: 225 ADLSNLQLTDAELGSK--IERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVIT------ 275
Query: 1101 EYSADTTDLVATDSETLVFPNDLKVDKEGYLWVLSDKLP--VHIHKGLHTDEINYRIFQT 1158
SAD + E L + + +GYL+ ++L ++ G + Y IF+
Sbjct: 276 --SADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGENISAPPYYIFRL 333
Query: 1159 PVKDA 1163
A
Sbjct: 334 KPLAA 338
Score = 191 bits (486), Expect = 5e-54
Identities = 66/365 (18%), Positives = 117/365 (32%), Gaps = 58/365 (15%)
Query: 338 NNLPLGLDRWHD-KLFVTIPRWKSGIVSTLNYINLTEAKGNLSPNLKPYPSYEINNIHKK 396
+ P + D +LF+++ ++ + + L P+P N
Sbjct: 16 SLAPGNITLTPDGRLFLSLHQFY-QPEMQVAELT--------QDGLIPFPPQSGNA---- 62
Query: 397 NGTTLVSGFRINVDVCDRLWMVDTGLADILGEGNQISTPRIVVIDLKTDKIIKEHTIAKE 456
T + I D +WM+D G S P++V D +++ + +
Sbjct: 63 -IITFDTVLGIKSDGNGIVWMLDNG-------NQSKSVPKLVAWDTLNNQLSRVIYLPPP 114
Query: 457 DIAAHSFFANILVDTTPNTCDKAFAYIPDLGGFQ---MIVYDLENNESYKVKHHYFYFDP 513
++SF ++ VD F YI D +I DL+ + +V Y P
Sbjct: 115 ITLSNSFVNDLAVD-----LIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAP 169
Query: 514 LSGNYNVGGVNFQWTD----------GVFGVALSPVHKEDGYRTLYFHPLSSTREFSVNT 563
+ + GV Q GV G+ L LY P+ ST + + +
Sbjct: 170 EDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-----ENEWLYLSPMHSTSMYRIKS 224
Query: 564 KILQNKTTASNSYYEFKVLGSRGPNSQASAESLDEKTGVLFYTQVNKDGVGCWNSYKHAN 623
L N S P + K ++ + +G
Sbjct: 225 ADLSNLQLTDAELGSKIERYSEKPICDGISID---KDHNIYVGDLAHSAIGVIT------ 275
Query: 624 EYSADTTDLVATDSETLVFPNDLKVDKEGYLWVLSDKL--SVHIYKGLHTDEINYRIFQT 681
SAD + E L + + +GYL+ ++L S + G + Y IF+
Sbjct: 276 --SADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGENISAPPYYIFRL 333
Query: 682 PVKDA 686
A
Sbjct: 334 KPLAA 338
Score = 110 bits (275), Expect = 4e-26
Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 28/208 (13%)
Query: 1 MIVYDLENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTD----------GVFGVALSPVH 50
+I DL+ + +V Y P + + GV Q GV G+ L
Sbjct: 147 LIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-- 204
Query: 51 KEDGYRTLYFHPLSSTREFSVNTKILQNKTTASNSYYEFKVLGSRGPNSQASAESLDEKT 110
LY P+ ST + + + L N S P + K
Sbjct: 205 ---ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISID---KD 258
Query: 111 GVLFYTQVNKDGVGCWNSYKHANEYSADTTDLVATDSETLVFPNDLKVDKEGYLWVLSDK 170
++ + +G SAD + E L + + +GYL+ ++
Sbjct: 259 HNIYVGDLAHSAIGVIT--------SADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310
Query: 171 L--SVHIYKGLHTDEINYRIFQTPVKDA 196
L S + G + Y IF+ A
Sbjct: 311 LHHSAPLNAGENISAPPYYIFRLKPLAA 338
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.0 bits (178), Expect = 5e-13
Identities = 104/715 (14%), Positives = 195/715 (27%), Gaps = 224/715 (31%)
Query: 16 HHYFYFDPLSGNYNVGGVNFQWTDGVFGVALSPVHKE-DGYRTL-YFHPLSSTREFSVNT 73
HH+ + D + G +Q+ D + V D + S E
Sbjct: 2 HHHHHMD-----FETGEHQYQYKD-ILSVFEDAFVDNFDCKDVQDMPKSILSKEEID--- 52
Query: 74 KILQNKTTASNSYYEFKVLGSRGPNS-QASAESLDEKTGVLFYTQVNKDGVGCWNSYKHA 132
I+ +K S + F L S+ Q E + + + +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE---QRQPSMMT 109
Query: 133 NEYSADTTDLVATDSETLVFPNDLKVDKEGYLWVLSD---KLSVHIYKGLHTDEINYRIF 189
Y + D + D++ VF V + L +L +
Sbjct: 110 RMYI-EQRDRLYNDNQ--VFA-KYNVSRLQPYLKLRQALLELRPAKNVLID--------- 156
Query: 190 QTPVKDAIKGT-----VCDVGTPQRLQFFSLRHIPPIQMFHWKTLLGTDTINA------P 238
+ G+ DV + ++ ++F W L ++
Sbjct: 157 ------GVLGSGKTWVALDV-----CLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQK 204
Query: 239 TYWYLTESITDGSSYFSLLQL----LGKRLR-LLKLRSHIPCSLI----------SAMSL 283
+ + + T S + S ++L + LR LLK + + C L+ +A +L
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 284 KCLTLL----AGVCLLACRVNAANER---------------LKELFAWKTVDFDFPDDAT 324
C LL V ++AA +K L K +D D
Sbjct: 265 SCKILLTTRFKQV---TDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPR 320
Query: 325 RAKAIENKEYIQENNLPL-----------GLDRWHDKLFVTIPRWKSGIVSTLNYINLTE 373
P GL W + V + + I S+LN + E
Sbjct: 321 EVLTT----------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 374 AKGNLSPNLKPYPSYEINNIHKKNGTTLVSGFRINVD----VCDRLWMVDTGLADILGEG 429
+ K + + F + + +W D++
Sbjct: 371 YR-------KMFDRLSV--------------FPPSAHIPTILLSLIW------FDVIKS- 402
Query: 430 NQISTPRIVVIDLKTDKIIKEHTIAKEDIAAHSFFANILVDTTPNTCDKAFAYIPDLGGF 489
+VV L ++++ KE +T IP +
Sbjct: 403 ----DVMVVVNKLHKYSLVEKQ--PKE-----------------STI-----SIPSI--- 431
Query: 490 QMIVYDLENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTDGVFGVALSPVHKEDGYRTLY 549
+ +L+ + H + +YN+ F D L P + D Y Y
Sbjct: 432 YL---ELKVKLENEYALH----RSIVDHYNI-PKTFDSDD------LIPPY-LDQY--FY 474
Query: 550 FH------PLSSTREFSVNTKILQNKTTASNSYYEF---KVLGSRGPNSQASAESLDEKT 600
H + ++ + + + F K+ AS L+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLD--------FRFLEQKIRHD-STAWNASGSILNTLQ 525
Query: 601 GVLFYTQ--VNKDGV--GCWNSYKH------ANEYSADTTDLVATDSETLVFPND 645
+ FY + D N+ N + TDL+ L+ ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI---ALMAEDE 577
Score = 51.8 bits (123), Expect = 1e-06
Identities = 86/609 (14%), Positives = 173/609 (28%), Gaps = 185/609 (30%)
Query: 628 DTTDLVATDSET---LVFPNDLKVDKEGYL-WVLSDKLSVHIYKGLHT-DEINYRIFQTP 682
D + + E ++ + V L W L K + K + INY+ +P
Sbjct: 40 DMPKSILSKEEIDHIIMSKDA--VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 683 VKDAIKGTVCDVVVTYIGSRGHL--ELQ-FGDRHIPPIQMFTG-RPMLGTTRPIKPHLL- 737
+K + YI R L + Q F ++ +Q + R L RP K L+
Sbjct: 98 IKTEQRQPSMMTR-MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 738 -----GKR-LRLLKLRSH-------------------IPCSLISAMSLKCLTLLAGVCLL 772
GK + L S+ P +++ + +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 773 A-------CRVNAANERLKELFAWKTVDFDFP------DD------------------AT 801
+ R+++ L+ L K + + T
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSK----PYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 802 RAKAI------ENKEYIQENNLPLGLDRWHDK---LFVTIPRWKSGIVSTLNYINLT--- 849
R K + +I ++ + L D+ L L Y++
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLT--PDEVKSLL-------------LKYLDCRPQD 317
Query: 850 ---EAKGNLSP--------NLKPYPSYEINNIHKKNGTTLVSGFRINVDVCD----RLWM 894
E +P +++ + +N N L + +++V + R
Sbjct: 318 LPREVLT-TNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 895 VDTGLADILGEGNQISTPRIVVI--DLKTDKIIKEHTIAKEDIAAHSFFANILVDTTPNT 952
L+ + I T + +I D+ + + + LV+ P
Sbjct: 376 DR--LS-VFPPSAHIPTILLSLIWFDVIKSDV--------MVV-VNKLHKYSLVEKQPK- 422
Query: 953 CDKAFAYIPDLGGFQMIVYDLENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTDGVFGVA 1012
++ IP + + +L+ + H + +YN+ F D
Sbjct: 423 --ESTISIPSI---YL---ELKVKLENEYALH----RSIVDHYNI-PKTFDSDD------ 463
Query: 1013 LSPVHKEDGYRTLYFH------PLSSTREFSVNTKILQNKTTASNSYYEF---KVLGSRG 1063
L P + D Y Y H + ++ + + + F K+
Sbjct: 464 LIPPY-LDQY--FYSHIGHHLKNIEHPERMTLFRMVFLD--------FRFLEQKIRHD-S 511
Query: 1064 PNSQATAESLDEKTGVLFYTQ--VNKDGV--GCWNSYKH------ANEYSADTTDLVATD 1113
A+ L+ + FY + D N+ N + TDL+
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI- 570
Query: 1114 SETLVFPND 1122
L+ ++
Sbjct: 571 --ALMAEDE 577
Score = 50.6 bits (120), Expect = 3e-06
Identities = 85/614 (13%), Positives = 168/614 (27%), Gaps = 169/614 (27%)
Query: 152 FPNDLKV-DKEGYLW-VLSDKLSVHIYKGLHTDEINYRIFQTPVKDAIKGTVCDVGTPQR 209
F ++ D + +LS + HI R+F T+
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF---------WTLLSKQEEMV 79
Query: 210 LQFF--SLRHIPPIQMFHWKTLLGTDTINAPTYWYLTESITDGSSYFSLLQL----LGKR 263
+F LR M KT ++ Y + + + + F+ + +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 264 LR--LLKLRSHIPCSLISAM--SLKCLTLLAGVCLLACRVNAANERLKELFA----WKTV 315
LR LL+LR LI + S K T +A L C + +++ W +
Sbjct: 140 LRQALLELRPA-KNVLIDGVLGSGK--TWVA---LDVCL----SYKVQCKMDFKIFWLNL 189
Query: 316 DFDFPDDATRAKAIENKEYIQENNLPLGLDRWHDKLFVTIPRWKSGIVSTLNY-INLTEA 374
+ +E L +D P W S + N + +
Sbjct: 190 KNCNSPETV----LE-----MLQKLLYQID----------PNWTSRSDHSSNIKLRIHSI 230
Query: 375 KGNLSPNL--KPYP-SYEI-NNIHKKNGTTLVSGFRINVDVCDRLWMV--DTGLADILGE 428
+ L L KPY + N+ + F ++ C ++ + + D L
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAK---AWNAFNLS---C-KILLTTRFKQVTDFLSA 283
Query: 429 GNQISTPRIVVIDLKTDKIIKEHTIAKEDIAAHSFFANIL-----------VDTTPNTCD 477
T + H++ S L + T P
Sbjct: 284 ATT------------THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 478 KAFAYIPD----LGGFQMIVYD---------LENNESYKVKHHYFYFDPLSGNYNVGGVN 524
I D ++ + D L E + + + + ++ +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 525 FQ--WTDGVFG---------VALSPVHKEDGYRTLYFHPL------SSTREFSVNTKILQ 567
W D + S V K+ T+ + E++++ I+
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV- 450
Query: 568 NKTTASNSYYEFKVLGSRGPNSQASAESLDEKTGVLFYTQVNKDGVGCWNSYKHANEYSA 627
+ Y K + LD+ FY+ + + H +
Sbjct: 451 ------DHYNIPKTF----DSDDLIPPYLDQ----YFYSHI---------GH-HL--KNI 484
Query: 628 DTTDLVATDSETLVFPN---DL-----KVDKEGYLW-----VLSDKLSVHIYKGLHTDEI 674
+ + + +F D K+ + W +L+ + YK D
Sbjct: 485 EHPERMT------LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-- 536
Query: 675 NYRIFQTPVKDAIK 688
N ++ V +
Sbjct: 537 NDPKYERLVNAILD 550
Score = 35.2 bits (80), Expect = 0.14
Identities = 59/433 (13%), Positives = 123/433 (28%), Gaps = 130/433 (30%)
Query: 793 DFDFPD--DATRAKAIENKEY---IQENNLPLGLDRWHDKLFVTIPRWKSGIVSTLNYIN 847
+FD D D ++ + +E I + G R LF T+ + +V
Sbjct: 32 NFDCKDVQDMPKS-ILSKEEIDHIIMSKDAVSGTLR----LFWTLLSKQEEMVQKF---- 82
Query: 848 LTEAKGNLSPNLKPYPSYEINNIHKK-NGTTLVSGFRINVDVCDRLWMVDTGLADILGEG 906
+ L N Y + ++ I + ++++ R+ ++ DRL+
Sbjct: 83 ---VEEVLRIN---YK-FLMSPIKTEQRQPSMMT--RMYIEQRDRLY-----------ND 122
Query: 907 NQISTPRIVVIDLKTDKIIKEHTIAKED-----IAAH-------SFFANILVDTTPNTCD 954
NQ+ V + +K E + ++ A + + C
Sbjct: 123 NQVFAKYNVS---RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 955 KAFA--YIPDLGGFQMIVYDLENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTDGVFGVA 1012
F ++ +L LE + + DP N+ +D +
Sbjct: 180 MDFKIFWL-NLKNCNSPETVLEMLQKL-----LYQIDP---NWT------SRSDHSSNIK 224
Query: 1013 LSPVHKEDGYRTLYFHP-----------LSSTRE---FSVNTKIL-----QNKTTASNSY 1053
L + R L + + + F+++ KIL + T ++
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 1054 YEFKVLGSRGPNSQATAESLDEKTGVLFYTQVN-------------------------KD 1088
+ + E L ++ +D
Sbjct: 285 TTTHISLDHHSMTLTPDEVKS-----LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 1089 GVGCWNSYKHANEYSADTT------DLVATDSETL-----VFPNDLKVDKE--GYLWV-L 1134
G+ W+++KH N T L + + VFP + +W +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 1135 SDKLPVHIHKGLH 1147
+ + LH
Sbjct: 400 IKSDVMVVVNKLH 412
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.2 bits (161), Expect = 6e-11
Identities = 93/550 (16%), Positives = 170/550 (30%), Gaps = 192/550 (34%)
Query: 430 NQISTPRIVVIDLKTDKIIKEHTIAKEDIAAHSF---------FANILVDTTPNTC-DKA 479
+ ST R + L + EH + + SF F IL + T D
Sbjct: 2 DAYST-RPLT--LSHGSL--EHVL---LVPTASFFIASQLQEQFNKILPEPTEGFAADDE 53
Query: 480 FAYIPDL-GGF-QMIVYDLENNESYK----VKHHYFYFDP--LSGNYNVGGVNFQWTDGV 531
+L G F + +E ++ + + F+ L GN ++
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-DI----------- 101
Query: 532 FGVALSPVHKEDGYRTLYFHPLSSTREFSVNTKILQNKTTASNSYYEFKVLGSRGPNSQA 591
H L++ +T +++ K N Y +++ R P +
Sbjct: 102 -------------------HALAAKLLQENDTTLVKTKELIKN-YITARIMAKR-PFDKK 140
Query: 592 SAESL-----DEKTGV--LFYTQVNKDGVGCW----NSYKHANEYSADTTDLVATDSETL 640
S +L + + +F Q N D + + Y+ Y DL+ +ETL
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDD--YFEELRDLYQT---YHVLVGDLIKFSAETL 195
Query: 641 ------------VFPNDLKVDK----------EGYLWVLSDKLSV-HIYKGLHTDEINYR 677
VF L + + + YL LS +S I G+ +Y
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL--LSIPISCPLI--GV-IQLAHYV 250
Query: 678 IF-----QTP--VKDAIKG-TVC--DVVV------------------------TYIGSRG 703
+ TP ++ +KG T +V +IG R
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 704 HLELQFGDRHIPPIQMFT------GRP--MLGTTRPIKPHLLGKRLRLLKLRSHIPCSLI 755
+ + + +PP + G P ML + + + + K SH+P
Sbjct: 311 Y--EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ-DYVN--KTNSHLPAGKQ 365
Query: 756 SAMSL----KCLTL------LAGVCLLACRVNAAN----------ERLKELFAWK----T 791
+SL K L + L G+ L + A + ER K F+ +
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNRFLPVA 424
Query: 792 VDF--DFPDDATRAKAIENKEYIQENNLPLGLDRWHDKLFVTIPRWKSGIVSTLNYINLT 849
F A+ + I ++ + + + IP + T + +L
Sbjct: 425 SPFHSHLLVPAS--------DLINKDLVKNNVSFNAKDI--QIP-----VYDTFDGSDLR 469
Query: 850 EAKGNLSPNL 859
G++S +
Sbjct: 470 VLSGSISERI 479
Score = 43.1 bits (101), Expect = 7e-04
Identities = 86/549 (15%), Positives = 165/549 (30%), Gaps = 169/549 (30%)
Query: 61 HPLSSTREFSVNTKILQNKTTASNSYYEFKVLGSRGPNSQA-SAESLDEKTGVLFYTQVN 119
H L++ +T +++ K N Y +++ R + ++ SA LF
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKN-YITARIMAKRPFDKKSNSA---------LF----- 146
Query: 120 KDGVGCWNSYKHANEYSADTTDLVATDSETLVFP---NDLKVDKEGYLWVLSDKLSVHIY 176
+ LVA +F N + Y ++L
Sbjct: 147 ----------RAVG---EGNAQLVA------IFGGQGNT-----DDYF----EELR---- 174
Query: 177 KGLHTDEINYRIFQTPVKDAIKGTVCDVGTPQRLQFFSLRHIP-PIQMFHWKTLLGTDTI 235
++ Y+ + V D IK + + R + + + + W L
Sbjct: 175 ------DL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW--LENPSN- 224
Query: 236 NAPTYWYLTES--------ITDGSSYFSLLQLLGKRLRLLKLRSHIPCSLISAMSLKCLT 287
P YL + + Y +LLG +LRS++ +
Sbjct: 225 -TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG--FTPGELRSYLKGA---------TG 272
Query: 288 LLAGVCLLACRVNAANERLKELFAWKTVDFDFPDDATRAKAIENKEYIQENNLPLGLDRW 347
G+ + A + + W+ F KAI +I G+ R
Sbjct: 273 HSQGL-VTAVAIAETDS-------WE----SFFVSV--RKAITVLFFI-------GV-RC 310
Query: 348 HDKLFVTIPRWKSGIVSTLNYINLTEAKGNLSP--NLKPYPSYEINN-IHKKNGT----- 399
++ P + + ++ +L +G SP ++ ++ + ++K N
Sbjct: 311 YE----AYPN--TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 400 ----TLVSGFRINVDVC---DRLWMVDTGLADILGEG--NQISTP---RIVVID------ 441
+LV+G + V V L+ ++ L +Q P R +
Sbjct: 365 QVEISLVNGAKNLV-VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 442 --------LK--TDKIIKEHTIAKEDIAAHSFFANILV-DTT--PNTCDKAFAYIPDLGG 488
L +D I K+ A I V DT + + + +
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDI--QIPVYDTFDGSDLRVLSGSISERI-- 479
Query: 489 FQMIVY---DLENNESYKVKHHYFYFDP--LSGNYNVGGVNFQWTDG-----VFGVALSP 538
I+ E +K H F P SG +G + + DG + L
Sbjct: 480 VDCIIRLPVKWETTTQFKA-THILDFGPGGASG---LGVLTHRNKDGTGVRVIVAGTLDI 535
Query: 539 VHKED-GYR 546
+D G++
Sbjct: 536 NPDDDYGFK 544
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 35.9 bits (82), Expect = 0.068
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 28/114 (24%)
Query: 436 RIVVIDLKTDKIIKEHTIAKEDIAAHSFFANILVDTTPNTCDKAFAYIPDLGGFQMIVYD 495
+ V+D+ +D + K + + P D AY+ + + D
Sbjct: 22 NLHVVDVASDTVYKSCVMPDKFGPGT-------AMMAP---DNRTAYVLNNHYGDIYGID 71
Query: 496 LENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTDGVFGVALSPVHKEDGYRTLY 549
L+ + + + N+ V + ++ A+SP DG + +Y
Sbjct: 72 LDTCK-------------NTFHANLSSVPGEVGRSMYSFAISP----DG-KEVY 107
Score = 35.9 bits (82), Expect = 0.068
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 28/114 (24%)
Query: 913 RIVVIDLKTDKIIKEHTIAKEDIAAHSFFANILVDTTPNTCDKAFAYIPDLGGFQMIVYD 972
+ V+D+ +D + K + + P D AY+ + + D
Sbjct: 22 NLHVVDVASDTVYKSCVMPDKFGPGT-------AMMAP---DNRTAYVLNNHYGDIYGID 71
Query: 973 LENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTDGVFGVALSPVHKEDGYRTLY 1026
L+ + + + N+ V + ++ A+SP DG + +Y
Sbjct: 72 LDTCK-------------NTFHANLSSVPGEVGRSMYSFAISP----DG-KEVY 107
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3;
transferase, pseudo kinase domain, vaccinia related
kinase, ATP-binding; 2.00A {Homo sapiens}
Length = 352
Score = 33.2 bits (76), Expect = 0.52
Identities = 35/159 (22%), Positives = 53/159 (33%), Gaps = 20/159 (12%)
Query: 145 TDSETLVFPNDLKVDKEGYLWVLSDKLSV----HIYKGLHTDEINYRIFQTPVKDAIKGT 200
T S + + DK G W L + +Y+ T + K ++K
Sbjct: 24 TTSLEALPTGTVLTDKSGRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLD 83
Query: 201 VCDVGTPQRLQFFSLRHIPPIQMFHWKTLLGTDTINAPTYWYLTESITDGSSYFSLLQLL 260
D G Q F R P+Q+ WK L T + PT + F +L L
Sbjct: 84 AKD-GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGF--GVHQDKYRFLVLPSL 140
Query: 261 GKRL-RLLKLRSHIPCSLISAMSLKCLTLLAGVCLLACR 298
G+ L L + +S + V +ACR
Sbjct: 141 GRSLQSALDVSPK------HVLSERS------VLQVACR 167
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Length = 172
Score = 31.0 bits (69), Expect = 1.4
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 432 ISTPRIVVIDLKTDKIIKEHTIAKEDIAAH-----SFFANILVDTTPNTCDKAFAYIPDL 486
I T RI V++ T + + +H + A A + + + + ++
Sbjct: 70 ILTQRIKVLNADTQETMMDHPLRTISYIADIGNIVVLMARRRIPRSNSQENVEASHPSQD 129
Query: 487 G 487
G
Sbjct: 130 G 130
Score = 31.0 bits (69), Expect = 1.4
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 909 ISTPRIVVIDLKTDKIIKEHTIAKEDIAAH-----SFFANILVDTTPNTCDKAFAYIPDL 963
I T RI V++ T + + +H + A A + + + + ++
Sbjct: 70 ILTQRIKVLNADTQETMMDHPLRTISYIADIGNIVVLMARRRIPRSNSQENVEASHPSQD 129
Query: 964 G 964
G
Sbjct: 130 G 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 31.2 bits (71), Expect = 2.3
Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 437 IVVIDLKTDKIIKEHTIAKEDIAAHSFFANILVDTTPNTCDKAFAYIPDLGGFQMIVYDL 496
+ V L+ + + + HS + +P D ++P L ++ ++ +
Sbjct: 108 VSVTRLEDGLPVGVVDVVEGLDGCHS------ANISP---DNRTLWVPALKQDRICLFTV 158
Query: 497 ENN 499
++
Sbjct: 159 SDD 161
Score = 31.2 bits (71), Expect = 2.3
Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 914 IVVIDLKTDKIIKEHTIAKEDIAAHSFFANILVDTTPNTCDKAFAYIPDLGGFQMIVYDL 973
+ V L+ + + + HS + +P D ++P L ++ ++ +
Sbjct: 108 VSVTRLEDGLPVGVVDVVEGLDGCHS------ANISP---DNRTLWVPALKQDRICLFTV 158
Query: 974 ENN 976
++
Sbjct: 159 SDD 161
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 30.5 bits (68), Expect = 3.0
Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 12/109 (11%)
Query: 436 RIVVIDLKTDKIIKEHTIAKEDIAAHSFFANILVDTTPNTCDKAFAYIPDLGGFQMIVYD 495
++VVID + + K I D + P AY ++ D
Sbjct: 12 KLVVIDTEKMAVDK--VITIADAGPTPMVPMV----AP---GGRIAYATVNKSESLVKID 62
Query: 496 LENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTDGVFGVALSPVHKEDG 544
L + P ++ G + SPV E
Sbjct: 63 LVTG---ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT 108
Score = 30.5 bits (68), Expect = 3.0
Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 12/109 (11%)
Query: 913 RIVVIDLKTDKIIKEHTIAKEDIAAHSFFANILVDTTPNTCDKAFAYIPDLGGFQMIVYD 972
++VVID + + K I D + P AY ++ D
Sbjct: 12 KLVVIDTEKMAVDK--VITIADAGPTPMVPMV----AP---GGRIAYATVNKSESLVKID 62
Query: 973 LENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTDGVFGVALSPVHKEDG 1021
L + P ++ G + SPV E
Sbjct: 63 LVTG---ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 4.4
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 5/19 (26%)
Query: 378 LSPNLKPY-----PSYEIN 391
L +LK Y P+ I
Sbjct: 25 LQASLKLYADDSAPALAIK 43
Score = 29.1 bits (64), Expect = 4.4
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 5/19 (26%)
Query: 855 LSPNLKPY-----PSYEIN 868
L +LK Y P+ I
Sbjct: 25 LQASLKLYADDSAPALAIK 43
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 29.7 bits (67), Expect = 5.6
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 143 VATDSETLVFPNDLKVDKEGYLWV 166
+ D T +D+ D +G +
Sbjct: 127 IIEDLSTAYCIDDMVFDSKGGFYF 150
Score = 29.7 bits (67), Expect = 5.6
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 633 VATDSETLVFPNDLKVDKEGYLWV 656
+ D T +D+ D +G +
Sbjct: 127 IIEDLSTAYCIDDMVFDSKGGFYF 150
Score = 29.7 bits (67), Expect = 5.6
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 1110 VATDSETLVFPNDLKVDKEGYLWV 1133
+ D T +D+ D +G +
Sbjct: 127 IIEDLSTAYCIDDMVFDSKGGFYF 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 29.4 bits (66), Expect = 6.9
Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 37/124 (29%)
Query: 430 NQISTPRIVVIDLKTDKIIKEHTIAKEDIAAHSFFANILVDTTPNTC----DKAFAYIPD 485
++ S + + D ++ + I T P D FA++ +
Sbjct: 146 DRSSANTVRRFKIDADGVLFDTGQEF-----------ISGGTRPFNITFTPDGNFAFVAN 194
Query: 486 LGGFQMIVYDLENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTDGVFGVALSPVHKEDGY 545
L G + + + +N E+ + + + +S DG
Sbjct: 195 LIGNSIGILETQNPENITLL----------NAVGTN-------NLPGTIVVSR----DG- 232
Query: 546 RTLY 549
T+Y
Sbjct: 233 STVY 236
Score = 29.4 bits (66), Expect = 6.9
Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 37/124 (29%)
Query: 907 NQISTPRIVVIDLKTDKIIKEHTIAKEDIAAHSFFANILVDTTPNTC----DKAFAYIPD 962
++ S + + D ++ + I T P D FA++ +
Sbjct: 146 DRSSANTVRRFKIDADGVLFDTGQEF-----------ISGGTRPFNITFTPDGNFAFVAN 194
Query: 963 LGGFQMIVYDLENNESYKVKHHYFYFDPLSGNYNVGGVNFQWTDGVFGVALSPVHKEDGY 1022
L G + + + +N E+ + + + +S DG
Sbjct: 195 LIGNSIGILETQNPENITLL----------NAVGTN-------NLPGTIVVSR----DG- 232
Query: 1023 RTLY 1026
T+Y
Sbjct: 233 STVY 236
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.416
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,115,417
Number of extensions: 1116580
Number of successful extensions: 2937
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2860
Number of HSP's successfully gapped: 46
Length of query: 1171
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1067
Effective length of database: 3,798,009
Effective search space: 4052475603
Effective search space used: 4052475603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)