RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14737
         (1171 letters)



>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
            {Pseudomonas putida [TaxId: 303]}
          Length = 346

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 21/253 (8%), Positives = 60/253 (23%), Gaps = 17/253 (6%)

Query: 914  IVVIDLKTDKIIKEHTIAKEDIAAHSFFANILVDTTPNTCDKAFAYIPDLGGFQMIVYDL 973
            + V+D+ +D + K   +  +                P   D   AY+ +     +   DL
Sbjct: 20   LHVVDVASDTVYKSCVMPDKFGPGT-------AMMAP---DNRTAYVLNNHYGDIYGIDL 69

Query: 974  ENNESYKVKHHYFYFDPLSGNYNVGGVNFQ----WTDGVFGVALSPVHKEDGYRTLYFHP 1029
            +  ++    +       +  +     ++      +        L+  +     R   F  
Sbjct: 70   DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 129

Query: 1030 LSSTREFSVNTKILQNKTTASNSYYEFKVLGSRGPNSQATAESLDEKTGVLFYTQVNKDG 1089
                    V T  +  +     +  +  +  +     +   ++      +       K  
Sbjct: 130  ADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGY 189

Query: 1090 VGCWNSYKHANEYSADTTDLVATDSETLVFPNDL---KVDKEGYLWVLSDKLPVHIHKGL 1146
                  Y   ++       ++ T +       D     +        L            
Sbjct: 190  SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD 249

Query: 1147 HTDEINYRIFQTP 1159
             T+     +    
Sbjct: 250  LTELYFTGLRSPK 262



 Score = 28.6 bits (62), Expect = 4.6
 Identities = 21/253 (8%), Positives = 61/253 (24%), Gaps = 17/253 (6%)

Query: 437 IVVIDLKTDKIIKEHTIAKEDIAAHSFFANILVDTTPNTCDKAFAYIPDLGGFQMIVYDL 496
           + V+D+ +D + K   +  +                P   D   AY+ +     +   DL
Sbjct: 20  LHVVDVASDTVYKSCVMPDKFGPGT-------AMMAP---DNRTAYVLNNHYGDIYGIDL 69

Query: 497 ENNESYKVKHHYFYFDPLSGNYNVGGVNFQ----WTDGVFGVALSPVHKEDGYRTLYFHP 552
           +  ++    +       +  +     ++      +        L+  +     R   F  
Sbjct: 70  DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 129

Query: 553 LSSTREFSVNTKILQNKTTASNSYYEFKVLGSRGPNSQASAESLDEKTGVLFYTQVNKDG 612
                   V T  +  +     +  +  +  +     +   ++      +       K  
Sbjct: 130 ADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGY 189

Query: 613 VGCWNSYKHANEYSADTTDLVATDSETLVFPNDL---KVDKEGYLWVLSDKLSVHIYKGL 669
                 Y   ++       ++ T +       D     +        L    +       
Sbjct: 190 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD 249

Query: 670 HTDEINYRIFQTP 682
            T+     +    
Sbjct: 250 LTELYFTGLRSPK 262


>d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit
            {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 178

 Score = 27.4 bits (61), Expect = 8.0
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 1002 FQWTDGVFGVALSPVHKEDGYRTLYFHPLSSTREFSVNTKILQNKTTASNSYYEFKVLGS 1061
            F +  GV       V K D +R +   P +S R      KIL+          E   +  
Sbjct: 53   FSFDKGVVYHCGPLVKKNDEWRVVSAGPTTSARMNPFTPKILEK--------VECMGIIG 104

Query: 1062 RGPNSQATAESLDEKTGVLFYT 1083
            +G  S+   E++  K     +T
Sbjct: 105  KGGMSEEVVEAMRGKAAYFAFT 126



 Score = 27.0 bits (60), Expect = 9.9
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 35  FQWTDGVFGVALSPVHKEDGYRTLYFHPLSSTREFSVNTKILQNKTTASNSYYEFKVLGS 94
           F +  GV       V K D +R +   P +S R      KIL+          E   +  
Sbjct: 53  FSFDKGVVYHCGPLVKKNDEWRVVSAGPTTSARMNPFTPKILEK--------VECMGIIG 104

Query: 95  RGPNSQASAESLDEKTGVLFYT 116
           +G  S+   E++  K     +T
Sbjct: 105 KGGMSEEVVEAMRGKAAYFAFT 126



 Score = 27.0 bits (60), Expect = 9.9
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 525 FQWTDGVFGVALSPVHKEDGYRTLYFHPLSSTREFSVNTKILQNKTTASNSYYEFKVLGS 584
           F +  GV       V K D +R +   P +S R      KIL+          E   +  
Sbjct: 53  FSFDKGVVYHCGPLVKKNDEWRVVSAGPTTSARMNPFTPKILEK--------VECMGIIG 104

Query: 585 RGPNSQASAESLDEKTGVLFYT 606
           +G  S+   E++  K     +T
Sbjct: 105 KGGMSEEVVEAMRGKAAYFAFT 126


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,460,539
Number of extensions: 215964
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 10
Length of query: 1171
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1076
Effective length of database: 1,103,246
Effective search space: 1187092696
Effective search space used: 1187092696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)