BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14739
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 394 bits (1011), Expect = e-110, Method: Compositional matrix adjust.
Identities = 184/269 (68%), Positives = 213/269 (79%), Gaps = 22/269 (8%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI 139
+ ++RILITGGAGFVGSHL DKLM+ GHEVTVVDNFFTGRK NVEHW GH NFE+I+ D+
Sbjct: 3 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 62
Query: 140 VTPLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKILFASTSEV 199
V PL++EVD+IYHLASPASPP+YM+NP+ MLGLAKRVGA++L ASTSEV
Sbjct: 63 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 122
Query: 200 YGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPR 259
YGDPEVHPQ E YWGHVNPIGPRACYDE KRVAET+CYAY + E + VRVARIFNT+GPR
Sbjct: 123 YGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR 182
Query: 260 MHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYVT 319
MHMNDGRVVSNFI+QAL+ E +T VYG G+QTR+FQYV+
Sbjct: 183 MHMNDGRVVSNFILQALQGEPLT----------------------VYGSGSQTRAFQYVS 220
Query: 320 DLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
DLV+GL+ALMNSN + PVNLGNP EH+IL
Sbjct: 221 DLVNGLVALMNSNVSSPVNLGNPEEHTIL 249
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/275 (65%), Positives = 207/275 (75%), Gaps = 24/275 (8%)
Query: 76 FQDYQSK--RRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFE 133
FQ + K +RILITGGAGFVGSHL DKL GHEVTVVDNFFTGRK NVEHW GH NFE
Sbjct: 19 FQGHXEKDRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFE 78
Query: 134 IIHQDIVTPLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKILF 193
+I+ D+V PL++EVD+IYHLASPASPP+Y +NP+ LGLAKRVGA++L
Sbjct: 79 LINHDVVEPLYIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLL 138
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIF 253
ASTSEVYGDPEVHPQ E YWGHVNPIGPRACYDE KRVAET CYAY + E + VRVARIF
Sbjct: 139 ASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIF 198
Query: 254 NTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTR 313
NT+GPR H NDGRVVSNFI+QAL+ E +T VYG G+QTR
Sbjct: 199 NTFGPRXHXNDGRVVSNFILQALQGEPLT----------------------VYGSGSQTR 236
Query: 314 SFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
+FQYV+DLV+GL+AL NSN + PVNLGNP EH+IL
Sbjct: 237 AFQYVSDLVNGLVALXNSNVSSPVNLGNPEEHTIL 271
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 131/268 (48%), Gaps = 45/268 (16%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
RI++TGGAGF+GSHLVDKL+ +G+EV VVDN +GR+E F +P+ E+ +D+
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRRE-----FVNPSAELHVRDLKDYS 56
Query: 144 F---VEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-ILFASTSEV 199
+ ++ D ++H A+ P+ +L A++ G + ++FAS+S V
Sbjct: 57 WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTV 116
Query: 200 YGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPR 259
YGD +V P PE P P + Y AK E +C YAR + R N GPR
Sbjct: 117 YGDADVIPTPEE-----EPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 171
Query: 260 MHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYVT 319
+ V+ +FI++ RN + +V G G Q +S+ YV
Sbjct: 172 LRHG---VIYDFIMKLRRNPNV---------------------LEVLGDGTQRKSYLYVR 207
Query: 320 DLVDGLIAL------MNSNYTLPVNLGN 341
D V+ +A M++ + L +N+GN
Sbjct: 208 DAVEATLAAWKKFEEMDAPF-LALNVGN 234
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 120/273 (43%), Gaps = 44/273 (16%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGR---KENVEHWFGHPNFEIIHQD 138
K RILITGGAGF+G HL L+ G EVTV+D+ E + P E+ +D
Sbjct: 7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERD 66
Query: 139 IVTPLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGA-KILFASTS 197
+ +V +YHLAS S P P+ +L L VG K++ ST
Sbjct: 67 LS-----DVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRH-LLALCTSVGVPKVVVGSTC 120
Query: 198 EVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHE-DLSVRVARIFNTY 256
EVYG + P PE +P+ PR+ Y +K E + A+ R V + R FN Y
Sbjct: 121 EVYGQADTLPTPED-----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVY 175
Query: 257 GP--RMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRS 314
GP R R+ +N + RNE +P V G G Q R
Sbjct: 176 GPGERPDALVPRLCANLLT---RNE------------------LP-----VEGDGEQRRD 209
Query: 315 FQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSI 347
F Y+TD+VD L+AL N VN G+ S+
Sbjct: 210 FTYITDVVDKLVALANRPLPSVVNFGSGQSLSV 242
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 121/269 (44%), Gaps = 51/269 (18%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIH----QDI 139
RI++TGGAGF+GSHLVDKL+ +G+EV VVD + E +H +D
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAE----------LHVRDLKDY 51
Query: 140 VTPLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-ILFASTSE 198
++ D ++H A+ P+ +L A++ G + ++FAS+S
Sbjct: 52 SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 111
Query: 199 VYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGP 258
VYGD +V P PE P P + Y AK E +C YAR + R N GP
Sbjct: 112 VYGDADVIPTPEE-----EPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGP 166
Query: 259 RMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYV 318
R+ V+ +FI++ RN + +V G G Q +S+ YV
Sbjct: 167 RLRHG---VIYDFIMKLRRNPNV---------------------LEVLGDGTQRKSYLYV 202
Query: 319 TDLVDGLIAL------MNSNYTLPVNLGN 341
D V+ +A M++ + L +N+GN
Sbjct: 203 RDAVEATLAAWKKFEEMDAPF-LALNVGN 230
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 32/243 (13%)
Query: 85 ILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPLF 144
I++TGGAGF+GSH+VDKL +E+ V+DN +G +E V ++ DI
Sbjct: 4 IVVTGGAGFIGSHVVDKLS-ESNEIVVIDNLSSGNEEFVNEAARLVKADLAADDI-KDYL 61
Query: 145 VEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVG-AKILFASTSEVYGDP 203
+E++H+A+ NP +L ++ G ++I+F STS VYG+
Sbjct: 62 KGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEA 121
Query: 204 EVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPRMHMN 263
+V P PE Y P P + Y +K E L +Y D+ + R N G R
Sbjct: 122 KVIPTPEDY-----PTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTHG 176
Query: 264 DGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYVTDLVD 323
V+ +FI++ RN P ++ G G Q +S+ Y++D VD
Sbjct: 177 ---VIYDFIMKLKRN--------------------PEEL-EILGNGEQNKSYIYISDCVD 212
Query: 324 GLI 326
++
Sbjct: 213 AML 215
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGH-EVTVVDNFFTGRKENVEHWFGHPNFEIIHQD 138
+ + R+LI G GF+G+HL ++L+ H EV +D G + + + HP+F + D
Sbjct: 11 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGD 66
Query: 139 I-VTPLFVE-----VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKIL 192
I + ++E D + L + A+P Y NP+ ++ + +I+
Sbjct: 67 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 193 FASTSEVYGDPEVHPQPETYWGH-VNPIG-PRACYDEAKRVAETLCYAYARHEDLSVRVA 250
F STSEVYG E + V P+ PR Y +K++ + + +AY E L +
Sbjct: 127 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 186
Query: 251 RIFNTYGPRM-HMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLG 309
R FN GPR+ ++N R+ SS++ T+ L + S ++ G
Sbjct: 187 RPFNWMGPRLDNLNAARI----------------GSSRAITQLILNL-VEGSPIKLIDGG 229
Query: 310 NQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
Q R F TD+ DG+ AL Y + N GN + I+
Sbjct: 230 KQKRCF---TDIRDGIEAL----YRIIENAGNRCDGEII 261
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGH-EVTVVDNFFTGRKENVEHWFGHPNFEIIHQD 138
+ + R+LI G GF+G+HL ++L+ H EV +D G + + + HP+F + D
Sbjct: 11 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGD 66
Query: 139 I-VTPLFVE-----VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKIL 192
I + ++E D + L + A+P Y NP+ ++ + +I+
Sbjct: 67 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 193 FASTSEVYGDPEVHPQPETYWGH-VNPIG-PRACYDEAKRVAETLCYAYARHEDLSVRVA 250
F STSEVYG E + V P+ PR Y +K++ + + +AY E L +
Sbjct: 127 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 186
Query: 251 RIFNTYGPRM-HMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLG 309
R FN GPR+ ++N R+ SS++ T+ L + S ++ G
Sbjct: 187 RPFNWMGPRLDNLNAARI----------------GSSRAITQLILNL-VEGSPIKLIDGG 229
Query: 310 NQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
Q R F TD+ DG+ AL Y + N GN + I+
Sbjct: 230 KQKRCF---TDIRDGIEAL----YRIIENAGNRCDGEII 261
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGH-EVTVVDNFFTGRKENVEHWFGHPNFEIIHQD 138
+ + R+LI G GF+G+HL ++L+ H EV +D G + + + HP+F + D
Sbjct: 11 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGD 66
Query: 139 I-VTPLFVE-----VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKIL 192
I + ++E D + L + A+P Y NP+ ++ + +I+
Sbjct: 67 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 193 FASTSEVYGDPEVHPQPETYWGH-VNPIG-PRACYDEAKRVAETLCYAYARHEDLSVRVA 250
F STSEVYG E + V P+ PR Y +K++ + + +AY E L +
Sbjct: 127 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 186
Query: 251 RIFNTYGPRM-HMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLG 309
R FN GPR+ ++N R+ SS++ T+ L + S ++ G
Sbjct: 187 RPFNWMGPRLDNLNAARI----------------GSSRAITQLILNL-VEGSPIKLIDGG 229
Query: 310 NQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
Q R F TD+ DG+ AL Y + N GN + I+
Sbjct: 230 KQKRCF---TDIRDGIEAL----YRIIENAGNRCDGEII 261
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGH-EVTVVDNFFTGRKENVEHWFGHPNFEIIHQD 138
+ + R+LI G GF+G+HL ++L+ H EV +D G + + + HP+F + D
Sbjct: 11 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGD 66
Query: 139 I-VTPLFVE-----VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKIL 192
I + ++E D + L + A+P Y NP+ ++ + +I+
Sbjct: 67 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 193 FASTSEVYGDPEVHPQPETYWGH-VNPIG-PRACYDEAKRVAETLCYAYARHEDLSVRVA 250
F STSEVYG E + V P+ PR Y +K++ + + +AY E L +
Sbjct: 127 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 186
Query: 251 RIFNTYGPRM-HMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLG 309
R FN GPR+ ++N R+ SS++ T+ L + S ++ G
Sbjct: 187 RPFNWMGPRLDNLNAARI----------------GSSRAITQLILNL-VEGSPIKLIDGG 229
Query: 310 NQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
Q R F TD+ DG+ AL Y + N GN + I+
Sbjct: 230 KQKRCF---TDIRDGIEAL----YRIIENAGNRCDGEII 261
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 124/275 (45%), Gaps = 38/275 (13%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGH-EVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI-VT 141
R+LI G GF+G+HL ++L+ H EV +D G + + + HP+F + DI +
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIH 57
Query: 142 PLFVE-----VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKILFAST 196
++E D + L + A+P Y NP+ ++ + +I+F ST
Sbjct: 58 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 117
Query: 197 SEVYGDPEVHPQPETYWGH-VNPIG-PRACYDEAKRVAETLCYAYARHEDLSVRVARIFN 254
SEVYG E + V P+ PR Y +K++ + + +AY E L + R FN
Sbjct: 118 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 177
Query: 255 TYGPRM-HMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTR 313
GPR+ ++N R+ SS++ T+ L + S ++ G Q R
Sbjct: 178 WMGPRLDNLNAARI----------------GSSRAITQLILNL-VEGSPIKLIDGGKQKR 220
Query: 314 SFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
F TD+ DG+ AL Y + N GN + I+
Sbjct: 221 CF---TDIRDGIEAL----YRIIENAGNRCDGEII 248
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 94/223 (42%), Gaps = 20/223 (8%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGH------EVTVVDNF-FTGRKENVEHWFGHPNFEIIH 136
R+L+TGGAGF+GSH V +L+ + EV V+D+ + G + N+ P +H
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 137 QDIVTPLFVE-----VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVG-AK 190
DI + VD I H A+ + + +L A G +
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
Query: 191 ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVA 250
++ ST EVYG + W +P+ P + Y +K ++ + AY R L VR+
Sbjct: 122 VVHVSTDEVYGSID-----SGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 251 RIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFW 293
R N YGP H +++ F+ L T+ + + W
Sbjct: 177 RCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREW 217
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 102/213 (47%), Gaps = 15/213 (7%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI--VT 141
R+L+TGGAGF+GSH+V+ L+ G EV V+DN TG++ENV G P F + +D V
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK--GVPFFRVDLRDKEGVE 59
Query: 142 PLFVEV--DEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGA-KILFAST-S 197
F E + H A+ AS + +PV +L ++ G K++FAST
Sbjct: 60 RAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGG 119
Query: 198 EVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYG 257
+YG+ + E W P P++ Y +K E Y + L R N YG
Sbjct: 120 AIYGEVPEGERAEETW----PPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYG 175
Query: 258 PRM--HMNDGRVVSNFIIQALRNETITSDSSKS 288
PR H G VV+ F + L+ +T + K+
Sbjct: 176 PRQDPHGEAG-VVAIFAERVLKGLPVTLYARKT 207
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGH-EVTVVDNFFTGRKENVEHWFGHPNFEIIHQD 138
+ + R+LI G GF+G+HL ++L+ H EV +D G + + + HP+F + D
Sbjct: 11 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGD 66
Query: 139 I-VTPLFVE-----VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKIL 192
I + ++E D + L + A+P Y NP+ ++ + +I+
Sbjct: 67 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 193 FASTSEVYGDPEVHPQPETYWGH-VNPIG-PRACYDEAKRVAETLCYAYARHEDLSVRVA 250
F ST+EVYG E + V P+ PR Y +K++ + + +AY E L +
Sbjct: 127 FPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 186
Query: 251 RIFNTYGPRM-HMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLG 309
R FN GPR+ ++N R+ SS++ T+ L + S ++ G
Sbjct: 187 RPFNWMGPRLDNLNAARI----------------GSSRAITQLILNL-VEGSPIKLIDGG 229
Query: 310 NQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
Q R F TD+ DG+ AL Y + N GN + I+
Sbjct: 230 KQKRCF---TDIRDGIEAL----YRIIENAGNRCDGEII 261
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 20/223 (8%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGH------EVTVVDNF-FTGRKENVEHWFGHPNFEIIH 136
R+L+TGGAGF+GSH V +L+ + EV V+D+ + G + N+ P +H
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 137 QDIVTPLFVE-----VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVG-AK 190
DI + VD I H A+ + + +L A G +
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
Query: 191 ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVA 250
++ ST++VYG + W +P+ P + Y +K ++ + AY R L VR+
Sbjct: 122 VVHVSTNQVYGSID-----SGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 251 RIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFW 293
R N YGP H +++ F+ L T+ + + W
Sbjct: 177 RCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREW 217
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 38/279 (13%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGH-EVTVVDNFFTGRKENVEHWFGHPNFEIIHQD 138
+ + R+LI G GF+G+HL ++L+ H EV +D + + + HP+F + D
Sbjct: 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI----GSDAISRFLNHPHFHFVEGD 368
Query: 139 I-VTPLFVE-----VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKIL 192
I + ++E D + L + A+P Y NP+ ++ + +I+
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 428
Query: 193 FASTSEVYGDPEVHPQPETYWGH-VNPIG-PRACYDEAKRVAETLCYAYARHEDLSVRVA 250
F STSEVYG E + V P+ PR Y +K++ + + +AY E L +
Sbjct: 429 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 488
Query: 251 RIFNTYGPRM-HMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLG 309
R FN GPR+ ++N R+ SS++ T+ L + S ++ G
Sbjct: 489 RPFNWMGPRLDNLNAARI----------------GSSRAITQLILNL-VEGSPIKLIDGG 531
Query: 310 NQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
Q R F TD+ DG+ AL Y + N GN + I+
Sbjct: 532 KQKRCF---TDIRDGIEAL----YRIIENAGNRCDGEII 563
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 83/193 (43%), Gaps = 23/193 (11%)
Query: 86 LITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVE---------HWFGHPNFEIIH 136
LITG AGF+GS+L++ L+ + +V +DNF TG + N++ W NF+ I
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQW---SNFKFIQ 87
Query: 137 QDI-----VTPLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK- 190
DI VD + H A+ S P + +P+ ML A+ +
Sbjct: 88 GDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQS 147
Query: 191 ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVA 250
+A++S YGD P+ E G P+ P Y K V E ++R S
Sbjct: 148 FTYAASSSTYGDHPGLPKVEDTIGK--PLSP---YAVTKYVNELYADVFSRCYGFSTIGL 202
Query: 251 RIFNTYGPRMHMN 263
R FN +G R N
Sbjct: 203 RYFNVFGRRQDPN 215
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 26/273 (9%)
Query: 85 ILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPLF 144
ILI GGAG++GSH V KL+ G V VVDN TG ++ + N ++ + + +F
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVF 63
Query: 145 VE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGA-KILFASTSEVYG 201
+ ++ + H A+ + M P+ +L + K +F+ST+ YG
Sbjct: 64 TQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYG 123
Query: 202 DPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPR-- 259
+ +V E P Y E K E + + Y++ +L ++ R FN G
Sbjct: 124 EVDVDLITEE-----TMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPN 178
Query: 260 -MHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYV 318
+ D R ++ I L+ + + F D P G R + +V
Sbjct: 179 GIIGEDHRPETHLIPLVLQ---VALGQREKIMMFGDDYNTPD--------GTCIRDYIHV 227
Query: 319 TDLVD----GLIALMNSNYTLPVNLGNPTEHSI 347
DLV GL L N + NLGN S+
Sbjct: 228 EDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSV 260
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 23/198 (11%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGH-PNFEIIHQDI--- 139
++LITGG GF+GS+L + G ++ V DN + HW NFE +H DI
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 62
Query: 140 --VTPLFVEV--DEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGA--KILF 193
VT L + D +HLA + + NP +L ++ + I++
Sbjct: 63 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 122
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDE------------AKRVAETLCYAYAR 241
+ST++VYGD E + ET + P YDE +K A+ YAR
Sbjct: 123 SSTNKVYGDLEQYKYNETETRYTCVDKPNG-YDESTQLDFHSPYGCSKGAADQYMLDYAR 181
Query: 242 HEDLSVRVARIFNTYGPR 259
L+ V R + YG R
Sbjct: 182 IFGLNTVVFRHSSMYGGR 199
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 125/285 (43%), Gaps = 36/285 (12%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE---NVEHWFG-HPNF---EIIH 136
R+L+TGG+G++GSH +L+ GH+V ++DN ++ +E G HP F +I +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 137 QDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-ILF 193
+ ++T + + +D + H A + + P+ ++ + K +F
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIG-PRACYDEAKRVAETLCYAYARHE-DLSVRVAR 251
+ST+ VYGD P E++ P G P++ Y ++K + E + + + D S+ + R
Sbjct: 122 SSTATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 252 IFNTYG--PRMHMN-DGRVVSNFIIQALRNETIT-SDSSKSFTKFWDTLYIPHSFTQVYG 307
FN G P M D + + N ++ + + DS F + T
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED---------- 226
Query: 308 LGNQTRSFQYVTDLVDGLIALMNSNYTLP----VNLGNPTEHSIL 348
G R + +V DL DG + M P NLG +S+L
Sbjct: 227 -GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVL 270
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 110/271 (40%), Gaps = 41/271 (15%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
+I ITG GF+ SH+ +L GH V D + E++ F ++ ++
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVMENC 87
Query: 144 FV---EVDEIYHLASPASPPHYM-FNPVXXXXXXXXXXXXMLGLAKRVGAKILF-ASTSE 198
VD +++LA+ ++ N M+ A+ G K F AS++
Sbjct: 88 LKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSAC 147
Query: 199 VYGDPE--------VHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVA 250
+Y PE V + W P P+ Y K E LC Y + + R+
Sbjct: 148 IY--PEFKQLETTNVSLKESDAW----PAEPQDAYGLEKLATEELCKHYNKDFGIECRIG 201
Query: 251 RIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGN 310
R N YGP GR + R ++D +F +++G G
Sbjct: 202 RFHNIYGPFGTWKGGREAAPAAF--CRKAQTSTD------RF-----------EMWGDGL 242
Query: 311 QTRSFQYVTDLVDGLIALMNSNYTLPVNLGN 341
QTRSF ++ + V+G++ L S++ PVN+G+
Sbjct: 243 QTRSFTFIDECVEGVLRLTKSDFREPVNIGS 273
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 106/271 (39%), Gaps = 41/271 (15%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
+I ITG GF+ SH+ +L GH V D + E++ F ++ ++
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVMENC 87
Query: 144 FV---EVDEIYHLASPASPPHYM-FNPVXXXXXXXXXXXXMLGLAKRVGAKILF-ASTSE 198
VD +++LA+ ++ N M+ A+ G K F AS++
Sbjct: 88 LKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSAC 147
Query: 199 VYGDPE--------VHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVA 250
+Y PE V + W P P+ Y K E LC Y + + R+
Sbjct: 148 IY--PEFKQLETTNVSLKESDAW----PAEPQDAYGLEKLATEELCKHYNKDFGIECRIG 201
Query: 251 RIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGN 310
R N YGP GR K+ F +++G G
Sbjct: 202 RFHNIYGPFGTWKGGR-------------------EKAPAAFCRKAQTSTDRFEMWGDGL 242
Query: 311 QTRSFQYVTDLVDGLIALMNSNYTLPVNLGN 341
QTRSF ++ + V+G++ L S++ PVN+G+
Sbjct: 243 QTRSFTFIDECVEGVLRLTKSDFREPVNIGS 273
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 93/217 (42%), Gaps = 24/217 (11%)
Query: 62 SLDVRIPKKYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE 121
S+D+ + +Y + Q S + LITG AGF+GS+L++KL+ + V +DNF TG +
Sbjct: 19 SMDIYM-SRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQY 77
Query: 122 NV---------EHWFGHPNFEIIHQDIVTPLFVE-----VDEIYHLASPASPPHYMFNPV 167
N+ E W F I DI E VD + H A+ S P + +P+
Sbjct: 78 NLDEVKTLVSTEQW---SRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPI 134
Query: 168 XXXXXXXXXXXXMLGLAKRVGAK-ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYD 226
+L AK + +A++S YGD P+ E G NP+ P A
Sbjct: 135 TTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIG--NPLSPYAV-- 190
Query: 227 EAKRVAETLCYAYARHEDLSVRVARIFNTYGPRMHMN 263
K V E YAR R FN +G R N
Sbjct: 191 -TKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPN 226
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 17/186 (9%)
Query: 85 ILITGGAGFVGSHLVDKLMLMGHEVTVVDNF----FTGRKENVEHWFGHPNFEIIHQDIV 140
IL+TGGAGF+GS+ V L +E + NF ++G NV+ HPN+ + +I
Sbjct: 27 ILVTGGAGFIGSNFV-HYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQ 85
Query: 141 TPLFVE-------VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRV-GAKIL 192
+E V I + A+ + + NP+ +L L K+ K++
Sbjct: 86 NGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLV 145
Query: 193 FASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARI 252
ST EVYG + + P+ P + Y +K A+ + AY + L V V R
Sbjct: 146 QVSTDEVYGSLGKTGR----FTEETPLAPNSPYSSSKASADXIALAYYKTYQLPVIVTRC 201
Query: 253 FNTYGP 258
N YGP
Sbjct: 202 SNNYGP 207
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 125/285 (43%), Gaps = 36/285 (12%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE---NVEHWFG-HPNF---EIIH 136
R+L+TGG+G++GSH +L+ GH+V ++DN ++ +E G HP F +I +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 137 QDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-ILF 193
+ ++T + + +D + H A + + P+ ++ + K +F
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIG-PRACYDEAKRVAETLCYAYARHE-DLSVRVAR 251
+S++ VYGD P E++ P G P++ Y ++K + E + + + D S+ + R
Sbjct: 122 SSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 252 IFNTYG--PRMHMN-DGRVVSNFIIQALRNETIT-SDSSKSFTKFWDTLYIPHSFTQVYG 307
FN G P M D + + N ++ + + DS F + T
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED---------- 226
Query: 308 LGNQTRSFQYVTDLVDGLIALMNSNYTLP----VNLGNPTEHSIL 348
G R + +V DL DG + M P NLG +S+L
Sbjct: 227 -GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVL 270
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 106/271 (39%), Gaps = 41/271 (15%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
+I ITG GF+ SH+ +L GH V D + E++ F ++ ++
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVMENC 87
Query: 144 FV---EVDEIYHLASPASPPHYM-FNPVXXXXXXXXXXXXMLGLAKRVGAKILF-ASTSE 198
VD +++LA+ ++ N M+ A+ G K F AS++
Sbjct: 88 LKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSAC 147
Query: 199 VYGDPE--------VHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVA 250
+Y PE V + W P P+ Y + E LC Y + + R+
Sbjct: 148 IY--PEFKQLETTNVSLKESDAW----PAEPQDAYGLERLATEELCKHYNKDFGIECRIG 201
Query: 251 RIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGN 310
R N YGP GR K+ F +++G G
Sbjct: 202 RFHNIYGPFGTWKGGR-------------------EKAPAAFCRKAQTSTDRFEMWGDGL 242
Query: 311 QTRSFQYVTDLVDGLIALMNSNYTLPVNLGN 341
QTRSF ++ + V+G++ L S++ PVN+G+
Sbjct: 243 QTRSFTFIDECVEGVLRLTKSDFREPVNIGS 273
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 125/285 (43%), Gaps = 36/285 (12%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE---NVEHWFG-HPNF---EIIH 136
R+L+TGG+G++GSH +L+ GH+V ++DN ++ +E G HP F +I +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 137 QDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-ILF 193
+ ++T + + +D + H A + + P+ ++ + K +F
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIG-PRACYDEAKRVAETLCYAYARHE-DLSVRVAR 251
+S++ VYGD P E++ P G P++ Y ++K + E + + + D S+ + R
Sbjct: 122 SSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 252 IFNTYG--PRMHMN-DGRVVSNFIIQALRNETIT-SDSSKSFTKFWDTLYIPHSFTQVYG 307
FN G P M D + + N ++ + + DS F + T
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED---------- 226
Query: 308 LGNQTRSFQYVTDLVDGLIALMNSNYTLP----VNLGNPTEHSIL 348
G R + +V DL DG + M P NLG +S+L
Sbjct: 227 -GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVL 270
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 125/285 (43%), Gaps = 36/285 (12%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE---NVEHWFG-HPNF---EIIH 136
R+L+TGG+G++GSH +L+ GH+V ++DN ++ +E G HP F +I +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 137 QDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-ILF 193
+ ++T + + +D + H A + + P+ ++ + K +F
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIG-PRACYDEAKRVAETLCYAYARHE-DLSVRVAR 251
+S++ VYGD P E++ P G P++ Y ++K + E + + + D S+ + R
Sbjct: 122 SSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 252 IFNTYG--PRMHMN-DGRVVSNFIIQALRNETIT-SDSSKSFTKFWDTLYIPHSFTQVYG 307
FN G P M D + + N ++ + + DS F + T
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED---------- 226
Query: 308 LGNQTRSFQYVTDLVDGLIALMNSNYTLP----VNLGNPTEHSIL 348
G R + +V DL DG + M P NLG +S+L
Sbjct: 227 -GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVL 270
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 88/209 (42%), Gaps = 23/209 (11%)
Query: 70 KYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENV------ 123
+Y + Q S + LITG AGF+GS+L++KL+ + V +DNF TG + N+
Sbjct: 13 RYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTL 72
Query: 124 ---EHWFGHPNFEIIHQDIVTPLFVE-----VDEIYHLASPASPPHYMFNPVXXXXXXXX 175
E W F I DI E VD + H A+ S P + +P+
Sbjct: 73 VSTEQW---SRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNIT 129
Query: 176 XXXXMLGLAKRVGAK-ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAET 234
+L AK + +A++S YGD P+ E G NP+ P A K V E
Sbjct: 130 GFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIG--NPLSPYAV---TKYVNEI 184
Query: 235 LCYAYARHEDLSVRVARIFNTYGPRMHMN 263
YAR R FN +G R N
Sbjct: 185 YAQVYARTYGFKTIGLRYFNVFGRRQDPN 213
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 88/209 (42%), Gaps = 23/209 (11%)
Query: 70 KYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENV------ 123
+Y + Q S + LITG AGF+GS+L++KL+ + V +DNF TG + N+
Sbjct: 13 RYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTL 72
Query: 124 ---EHWFGHPNFEIIHQDIVTPLFVE-----VDEIYHLASPASPPHYMFNPVXXXXXXXX 175
E W F I DI E VD + H A+ S P + +P+
Sbjct: 73 VSTEQW---SRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNIT 129
Query: 176 XXXXMLGLAKRVGAK-ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAET 234
+L AK + +A++S YGD P+ E G NP+ P A K V E
Sbjct: 130 GFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIG--NPLSPYAV---TKYVNEI 184
Query: 235 LCYAYARHEDLSVRVARIFNTYGPRMHMN 263
YAR R FN +G R N
Sbjct: 185 YAQVYARTYGFKTIGLRYFNVFGRRQDPN 213
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 88/209 (42%), Gaps = 23/209 (11%)
Query: 70 KYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENV------ 123
+Y + Q S + LITG AGF+GS+L++KL+ + V +DNF TG + N+
Sbjct: 7 RYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTL 66
Query: 124 ---EHWFGHPNFEIIHQDIVTPLFVE-----VDEIYHLASPASPPHYMFNPVXXXXXXXX 175
E W F I DI E VD + H A+ S P + +P+
Sbjct: 67 VSTEQW---SRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNIT 123
Query: 176 XXXXMLGLAKRVGAK-ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAET 234
+L AK + +A++S YGD P+ E G NP+ P A K V E
Sbjct: 124 GFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIG--NPLSPYAV---TKYVNEI 178
Query: 235 LCYAYARHEDLSVRVARIFNTYGPRMHMN 263
YAR R FN +G R N
Sbjct: 179 YAQVYARTYGFKTIGLRYFNVFGRRQDPN 207
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 36/285 (12%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE---NVEHWFG-HPNF---EIIH 136
R+L+TGG+G++GSH +L+ GH+V ++DN ++ +E G HP F +I +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 137 QDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-ILF 193
+ ++T + + +D + H A + + P+ ++ + K +F
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIG-PRACYDEAKRVAETLCYAYARHE-DLSVRVAR 251
+S + VYGD P E++ P G P++ Y ++K + E + + + D S+ + R
Sbjct: 122 SSAATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 252 IFNTYG--PRMHMN-DGRVVSNFIIQALRNETIT-SDSSKSFTKFWDTLYIPHSFTQVYG 307
FN G P M D + + N ++ + + DS F + T
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED---------- 226
Query: 308 LGNQTRSFQYVTDLVDGLIALMNSNYTLP----VNLGNPTEHSIL 348
G R + +V DL DG + M P NLG +S+L
Sbjct: 227 -GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVL 270
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 106/271 (39%), Gaps = 41/271 (15%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
+I ITG GF+ SH+ +L GH V D + E++ F ++ ++
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVMENC 87
Query: 144 FV---EVDEIYHLASPASPPHYM-FNPVXXXXXXXXXXXXMLGLAKRVGAKILF-ASTSE 198
VD +++LA+ ++ N M+ A+ G K F AS++
Sbjct: 88 LKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSAC 147
Query: 199 VYGDPE--------VHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVA 250
+Y PE V + W P P+ + K E LC Y + + R+
Sbjct: 148 IY--PEFKQLETTNVSLKESDAW----PAEPQDAFGLEKLATEELCKHYNKDFGIECRIG 201
Query: 251 RIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGN 310
R N YGP GR K+ F +++G G
Sbjct: 202 RFHNIYGPFGTWKGGR-------------------EKAPAAFCRKAQTSTDRFEMWGDGL 242
Query: 311 QTRSFQYVTDLVDGLIALMNSNYTLPVNLGN 341
QTRSF ++ + V+G++ L S++ PVN+G+
Sbjct: 243 QTRSFTFIDECVEGVLRLTKSDFREPVNIGS 273
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 36/285 (12%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE---NVEHWFG-HPNF---EIIH 136
R+L+TGG+G++GSH +L+ GH+V ++DN ++ +E G HP F +I +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 137 QDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-ILF 193
+ ++T + + +D + H A + + P+ ++ + K +F
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIG-PRACYDEAKRVAETLCYAYARHE-DLSVRVAR 251
+S + VYGD P E++ P G P++ Y ++K + E + + + D S+ + R
Sbjct: 122 SSVATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 252 IFNTYG--PRMHMN-DGRVVSNFIIQALRNETIT-SDSSKSFTKFWDTLYIPHSFTQVYG 307
FN G P M D + + N ++ + + DS F + T
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED---------- 226
Query: 308 LGNQTRSFQYVTDLVDGLIALMNSNYTLP----VNLGNPTEHSIL 348
G R + +V DL DG + M P NLG +S+L
Sbjct: 227 -GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVL 270
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 36/285 (12%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE---NVEHWFG-HPNF---EIIH 136
R+L+TGG+G++GSH +L+ GH+V ++DN ++ +E G HP F +I +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 137 QDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-ILF 193
+ ++T + + +D + H A + + P+ ++ + K +F
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIG-PRACYDEAKRVAETLCYAYARHE-DLSVRVAR 251
+S + VYGD P E++ P G P++ Y ++K + E + + + D S+ + R
Sbjct: 122 SSAATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 252 IFNTYG--PRMHMN-DGRVVSNFIIQALRNETIT-SDSSKSFTKFWDTLYIPHSFTQVYG 307
FN G P M D + + N ++ + + DS F + T
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED---------- 226
Query: 308 LGNQTRSFQYVTDLVDGLIALMNSNYTLP----VNLGNPTEHSIL 348
G R + +V DL DG + M P NLG +S+L
Sbjct: 227 -GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVL 270
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 120/278 (43%), Gaps = 44/278 (15%)
Query: 83 RRILITGGAGFVGSHLVDKLM-LMGHEVTVVDNFFTGRKENVEHWFGHPNFE---IIHQD 138
+++LI G GF+G HL +++ EV +D + V+H H FE I+++
Sbjct: 25 KKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMH-FFEGDITINKE 83
Query: 139 IVTPLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKILFASTSE 198
V + D I L + A+P Y+ P+ ++ A + G ++F STSE
Sbjct: 84 WVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSE 143
Query: 199 VYG---DPEVHPQPETY-WGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFN 254
VYG D + P +G +N PR Y +K++ + + + Y E L+ + R FN
Sbjct: 144 VYGMCADEQFDPDASALTYGPINK--PRWIYACSKQLMDRVIWGYGM-EGLNFTLFRPFN 200
Query: 255 TYGPRMHM------NDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGL 308
GP + RVV+ F+ +R E I+ +
Sbjct: 201 WIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENIS----------------------LVDG 238
Query: 309 GNQTRSFQYVTDLVDGLIALM-NSNYTLP---VNLGNP 342
G+Q R+F YV D + L+ ++ NSN N+GNP
Sbjct: 239 GSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNP 276
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 125/285 (43%), Gaps = 36/285 (12%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE---NVEHWFG-HPNF---EIIH 136
R+L+TGG+G++GSH +L+ GH+V ++DN ++ +E G HP F +I +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 137 QDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-ILF 193
+ ++T + + +D + H A + + P+ ++ + K +F
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIG-PRACYDEAKRVAETLCYAYARHE-DLSVRVAR 251
+S++ VYGD P E++ P G P++ + ++K + E + + + D S+ + R
Sbjct: 122 SSSATVYGDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 252 IFNTYG--PRMHMN-DGRVVSNFIIQALRNETIT-SDSSKSFTKFWDTLYIPHSFTQVYG 307
FN G P M D + + N ++ + + DS F + T
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED---------- 226
Query: 308 LGNQTRSFQYVTDLVDGLIALMNSNYTLP----VNLGNPTEHSIL 348
G R + +V DL DG + M P NLG +S+L
Sbjct: 227 -GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVL 270
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 36/285 (12%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE---NVEHWFG-HPNF---EIIH 136
R+L+TGG+G++GSH +L+ GH+V ++DN ++ +E G HP F +I +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 137 QDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-ILF 193
+ ++T + + +D + H A + + P+ ++ + K +F
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIG-PRACYDEAKRVAETLCYAYARHE-DLSVRVAR 251
+S + VYGD P E++ P G P++ + ++K + E + + + D S+ + R
Sbjct: 122 SSAATVYGDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 252 IFNTYG--PRMHMN-DGRVVSNFIIQALRNETIT-SDSSKSFTKFWDTLYIPHSFTQVYG 307
FN G P M D + + N ++ + + DS F + T
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED---------- 226
Query: 308 LGNQTRSFQYVTDLVDGLIALMNSNYTLP----VNLGNPTEHSIL 348
G R + +V DL DG + M P NLG +S+L
Sbjct: 227 -GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVL 270
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 36/285 (12%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE---NVEHWFG-HPNF---EIIH 136
R+L+TGG+G++GSH +L+ GH+V ++DN ++ +E G HP F +I +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 137 QDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-ILF 193
+ ++T + + +D + H A + + P+ ++ + K +F
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIG-PRACYDEAKRVAETLCYAYARHE-DLSVRVAR 251
+S + VYGD P E++ P G P++ + ++K + E + + + D S+ + R
Sbjct: 122 SSAATVYGDNPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 252 IFNTYG--PRMHMN-DGRVVSNFIIQALRNETIT-SDSSKSFTKFWDTLYIPHSFTQVYG 307
FN G P M D + + N ++ + + DS F + T
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED---------- 226
Query: 308 LGNQTRSFQYVTDLVDGLIALMNSNYTLP----VNLGNPTEHSIL 348
G R + +V DL DG + M P NLG +S+L
Sbjct: 227 -GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVL 270
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 25/226 (11%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIV 140
S RILITGGAG +GS+L++ + GHE+ V+DNF TG++E + G +I +
Sbjct: 19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAG---LSVIEGSVT 75
Query: 141 TPLFVE-------VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK-IL 192
+E + H A+ P + + A + G K +L
Sbjct: 76 DAGLLERAFDSFKPTHVVHSAAAYKDPD---DWAEDAATNVQGSINVAKAASKAGVKRLL 132
Query: 193 FASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARI 252
T+ YG P P P +P P Y +K E A+ D+ V R+
Sbjct: 133 NFQTALCYGRPATVPIPID-----SPTAPFTSYGISKTAGE----AFLMMSDVPVVSLRL 183
Query: 253 FNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYI 298
N GPR+ + G + + + + SD+ + F D L I
Sbjct: 184 ANVTGPRLAI--GPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAI 227
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGH---EVTVVDNF-FTGRKENVEHWFGHPNFEIIHQD 138
+ I++TGGAGF+GS+ V + H VTV+D + G K N+E G E++ D
Sbjct: 5 KNIIVTGGAGFIGSNFV-HYVYNNHPDVHVTVLDKLTYAGNKANLEAILG-DRVELVVGD 62
Query: 139 I-----VTPLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKILF 193
I V L + D I H A+ + + + +P +L A++ +
Sbjct: 63 IADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHH 122
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIG----------PRACYDEAKRVAETLCYAYARHE 243
ST EVYGD P E GH G P + Y K ++ + A+ R
Sbjct: 123 VSTDEVYGDL---PLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF 179
Query: 244 DLSVRVARIFNTYGPRMHM 262
+ ++ N YGP H+
Sbjct: 180 GVKATISNCSNNYGPYQHI 198
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 118/287 (41%), Gaps = 62/287 (21%)
Query: 78 DYQSKRRILITGGAGFVGSHLVDKLMLMGH---EVTVVDNFFT------GRKENVEHWFG 128
D + ILITGGAGFVGS+L H +V V+D F + R ++ H+
Sbjct: 6 DELENQTILITGGAGFVGSNLAFHFQ-ENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKN 64
Query: 129 HPNF--EIIHQDIVTPL------FVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXM 180
F E+I DI PL + D ++H A+ + M N +
Sbjct: 65 LIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNL 122
Query: 181 LGLAKRVGAKILFASTSEVYGD---PEV---HPQPETYWGHVNPIGPRACYDEAKRVAET 234
L +A+ AK+++AS++ VYG+ P V + PE +G + C DE
Sbjct: 123 LEIARSKKAKVIYASSAGVYGNTKAPNVVGKNESPENVYGF-----SKLCMDE------- 170
Query: 235 LCYAYARHEDLSVRVA-RIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFW 293
H + +V+V R FN YGPR + + S + AL + +F +
Sbjct: 171 ---FVLSHSNDNVQVGLRYFNVYGPREFYKE-KTASMVLQLAL--------GAMAFKE-- 216
Query: 294 DTLYIPHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTLPVNLG 340
+++ G Q R F Y+ D++ + M + + N+G
Sbjct: 217 ---------VKLFEFGEQLRDFVYIEDVIQANVKAMKAQKSGVYNVG 254
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 35/288 (12%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE---NVEHWFGH-PNF--- 132
+K IL+TGGAG++GSH +L+ G++V + DN ++E +E G P F
Sbjct: 3 STKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHET 62
Query: 133 EIIHQDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAK-RVGA 189
++ + + +F + H A+ + + P+ +L + + R
Sbjct: 63 DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK 122
Query: 190 KILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRV 249
+I+F+S++ VYG PE P ET+ P+ Y + K +AE + D S RV
Sbjct: 123 RIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRD-VEAADPSWRV 176
Query: 250 A--RIFNTYGPR---MHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQ 304
A R FN G + D + N ++ + + + F P
Sbjct: 177 ATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQ--VAVGKLEKLRVFGSDYPTPD---- 230
Query: 305 VYGLGNQTRSFQYVTDLVDGLIALMNS----NYTLPVNLGNPTEHSIL 348
G R + +V DL G IA +++ + +L VNLG +S+L
Sbjct: 231 ----GTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVL 274
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 102/253 (40%), Gaps = 41/253 (16%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGH---EVTVVDNFFTGRK-ENVEHWFGHPNFEIIHQDI 139
++L+TGG GF+GS+ + + +L H EV +D G N++ P + + D+
Sbjct: 5 KLLVTGGMGFIGSNFI-RYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDV 63
Query: 140 -----VTPLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKILFA 194
V L +VD + HLA+ + + +P +L +R ++ F
Sbjct: 64 ADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFV 123
Query: 195 --STSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARI 252
ST EVYGD E + + P + Y K ++ L + R +L+ + R
Sbjct: 124 HVSTDEVYGDILKGSFTEN-----DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRC 178
Query: 253 FNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQT 312
N YGP + +++ II+A L IP +YG G
Sbjct: 179 TNNYGP--YQFPEKLIPKTIIRASLG-----------------LKIP-----IYGTGKNV 214
Query: 313 RSFQYVTDLVDGL 325
R + YV D V +
Sbjct: 215 RDWLYVEDHVRAI 227
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 117/297 (39%), Gaps = 54/297 (18%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNF-------------------FTGRKENVE 124
++L+TGGAG++GSH V +L+ G+ V+DNF TGR E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 125 HWFGHPNFEIIHQDIVTPLFVEVD--EIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLG 182
+I+ Q + LF + + H A + + P+ +L
Sbjct: 64 E------MDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLE 117
Query: 183 LAKRVGAK-ILFASTSEVYGDPEVHPQPETY--WGHVNPIGPRACYDEAKRVAETLCYAY 239
+ K G K ++F+S++ VYG+P+ P E + G NP G + E + LC A
Sbjct: 118 IMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIE--EMIRDLCQA- 174
Query: 240 ARHEDLSVRVARIFNTYGPRMH---MNDGRVVSNFIIQALRNETIT-SDSSKSFTKFWDT 295
+ +V + R FN G D + + N ++ + I ++ F +DT
Sbjct: 175 --DKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDT 232
Query: 296 LYIPHSFTQVYGLGNQTRSFQYVTDLVDGLIA----LMNSNYTLPVNLGNPTEHSIL 348
G R + +V DL G IA L NLG T +S+L
Sbjct: 233 ED-----------GTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVL 278
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 117/297 (39%), Gaps = 54/297 (18%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNF-------------------FTGRKENVE 124
++L+TGGAG++GSH V +L+ G+ V+DNF TGR E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 125 HWFGHPNFEIIHQDIVTPLFVEVD--EIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLG 182
+I+ Q + LF + + H A + + P+ +L
Sbjct: 64 E------MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLE 117
Query: 183 LAKRVGAK-ILFASTSEVYGDPEVHPQPETY--WGHVNPIGPRACYDEAKRVAETLCYAY 239
+ K G K ++F+S++ VYG+P+ P E + G NP G + E + LC A
Sbjct: 118 IMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIE--EMIRDLCQA- 174
Query: 240 ARHEDLSVRVARIFNTYGPRMH---MNDGRVVSNFIIQALRNETIT-SDSSKSFTKFWDT 295
+ +V + R FN G D + + N ++ + I ++ F +DT
Sbjct: 175 --DKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDT 232
Query: 296 LYIPHSFTQVYGLGNQTRSFQYVTDLVDGLIA----LMNSNYTLPVNLGNPTEHSIL 348
G R + +V DL G IA L NLG T +S+L
Sbjct: 233 ED-----------GTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVL 278
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 21/201 (10%)
Query: 73 SVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENV-------EH 125
+ + Q + + +L+TGGAG++GSH V +L+ G++ V DN ++V +H
Sbjct: 2 TAQLQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKH 61
Query: 126 WFGHPNFEIIHQDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGL 183
++ + + +F E +D + H A + P+ +L L
Sbjct: 62 HIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLEL 121
Query: 184 AKRVG-AKILFASTSEVYGD----PEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYA 238
++ +K +F+S++ VYGD P + P PE P+GP Y K E +
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC-----PLGPTNPYGHTKYAIENILND 176
Query: 239 YARHEDLSVRVA--RIFNTYG 257
+ S + A R FN G
Sbjct: 177 LYNSDKKSWKFAILRYFNPIG 197
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 118/296 (39%), Gaps = 58/296 (19%)
Query: 85 ILITGGAGFVGSHLVDKLMLMG-HEVTVVDNFFTGRKENVEHWFGHPNF-----EIIHQD 138
+++ GGAGFVGS+LV +L+ +G ++V VVDN + K NV HP I
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPD---HPAVRFSETSITDDA 91
Query: 139 IVTPLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXM---LGLAKRVGAKILFAS 195
++ L E D ++HLA+ + +P+ + L KR+ K+++++
Sbjct: 92 LLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRL-KKVVYSA 150
Query: 196 TS-----EVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVA 250
+ + D + + + H N + Y +K E Y + L A
Sbjct: 151 AGCSIAEKTFDDAKATEETDIVSLHNND----SPYSMSKIFGEFYSVYYHKQHQLPTVRA 206
Query: 251 RIFNTYGPRMHMNDGR-----------VVSNFIIQALRNETITSDSSKSFTKFWDTLYIP 299
R N YGP + GR V FI +AL+ + ++
Sbjct: 207 RFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENG------------- 253
Query: 300 HSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTLPV-NLGNPTEHSI--LACKL 352
G TR F +V D+ +GLIA V N+ + E SI LA K+
Sbjct: 254 ---------GVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKI 300
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 116/297 (39%), Gaps = 54/297 (18%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNF-------------------FTGRKENVE 124
++L+TGGAG++GSH V +L+ G+ V+DNF TGR E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 125 HWFGHPNFEIIHQDIVTPLFVEVD--EIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLG 182
+I+ Q + LF + + H A + + P+ +L
Sbjct: 64 E------MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLE 117
Query: 183 LAKRVGAK-ILFASTSEVYGDPEVHPQPETY--WGHVNPIGPRACYDEAKRVAETLCYAY 239
+ K G K ++F+S++ VYG+P+ P E + G NP G + E + LC A
Sbjct: 118 IMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIE--EMIRDLCQA- 174
Query: 240 ARHEDLSVRVARIFNTYGPRMH---MNDGRVVSNFIIQALRNETIT-SDSSKSFTKFWDT 295
+ + + R FN G D + + N ++ + I ++ F +DT
Sbjct: 175 --DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDT 232
Query: 296 LYIPHSFTQVYGLGNQTRSFQYVTDLVDGLIA----LMNSNYTLPVNLGNPTEHSIL 348
G R + +V DL G IA L NLG T +S+L
Sbjct: 233 ED-----------GTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVL 278
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 102/268 (38%), Gaps = 46/268 (17%)
Query: 83 RRILITGGAGFVGSHLVDKLM-LMGHEVTVVD------NFFTGRKENVEHWFGHPNFEII 135
R+ILITGGAGF+GS LV ++ V VVD N + F +I
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDIC 61
Query: 136 HQDIVTPLFVE--VDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLA--------- 184
+ + +F E D + HLA+ + + P +L A
Sbjct: 62 DRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTE 121
Query: 185 -KRVGAKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHE 243
K+ + ST EVYGD +H + ++ P P + Y +K ++ L A+ R
Sbjct: 122 DKKSAFRFHHISTDEVYGD--LH-STDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 244 DLSVRVARIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFT 303
L + N YGP H + +++ I+ AL +++
Sbjct: 179 GLPTLITNCSNNYGP-YHFPE-KLIPLMILNALAGKSL---------------------- 214
Query: 304 QVYGLGNQTRSFQYVTDLVDGLIALMNS 331
VYG G Q R + YV D L + +
Sbjct: 215 PVYGNGQQIRDWLYVEDHARALYCVATT 242
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 105/269 (39%), Gaps = 54/269 (20%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTV-VDNF-FTGRKENVEHWFGHPNFEIIHQDI-- 139
+ILITGGAGF+GS +V ++ + V +D + G E++ + H DI
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 140 ---VTPLFVEV--DEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGA----- 189
+T +F + D + HLA+ + + P +L +A++ +
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121
Query: 190 -----KILFASTSEVYGDPEVHPQPETYWGHVN-PI-------GPRACYDEAKRVAETLC 236
+ ST EVYGD P P+ V P+ P + Y +K ++ L
Sbjct: 122 KKNNFRFHHISTDEVYGDL---PHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLV 178
Query: 237 YAYARHEDLSVRVARIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTL 296
A+ R L V N YGP H + +++ I+ AL + +
Sbjct: 179 RAWRRTYGLPTIVTNCSNNYGP-YHFPE-KLIPLVILNALEGKPL--------------- 221
Query: 297 YIPHSFTQVYGLGNQTRSFQYVTDLVDGL 325
+YG G+Q R + YV D L
Sbjct: 222 -------PIYGKGDQIRDWLYVEDHARAL 243
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 37/234 (15%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTP 142
+++ ITG G +GSH+ + L+ G +V +DNF TGR+ EH HPN + I
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRR---EHLKDHPNLTFVEGSIADH 78
Query: 143 LFV-------EVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKR--VGAKILF 193
V + D + H A+ P +N ++ AK+ VG + ++
Sbjct: 79 ALVNQLIGDLQPDAVVHTAASYKDPDDWYN---DTLTNCVGGSNVVQAAKKNNVG-RFVY 134
Query: 194 ASTSEVYGDPEVHP-QPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARI 252
T+ YG V P Q H PR + + ++++ Y + L R+
Sbjct: 135 FQTALCYG---VKPIQQPVRLDH-----PRNPANSSYAISKSANEDYLEYSGLDFVTFRL 186
Query: 253 FNTYGPR----------MHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTL 296
N GPR +++G+ F+ +A R+ D +++ + D +
Sbjct: 187 ANVVGPRNVSGPLPIFFQRLSEGK--KCFVTKARRDFVFVKDLARATVRAVDGV 238
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 79/202 (39%), Gaps = 27/202 (13%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
R LITG AGFVG +L + L EV F T R + PN E+I DI+
Sbjct: 14 RALITGVAGFVGKYLANHLTEQNVEV-----FGTSRNNEAK----LPNVEMISLDIMDSQ 64
Query: 144 FVEV-------DEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAK--RVGAKILFA 194
V+ D I+HLA+ +S N +L + + +IL
Sbjct: 65 RVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTI 124
Query: 195 STSEVYGD--PEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARI 252
+SE YG PE P E N + P + Y +K L Y + + + R
Sbjct: 125 GSSEEYGMILPEESPVSEE-----NQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRT 179
Query: 253 FNTYGPRMHMNDGRVVSNFIIQ 274
FN GP + G V +F Q
Sbjct: 180 FNHIGPGQSL--GFVTQDFAKQ 199
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 80/193 (41%), Gaps = 26/193 (13%)
Query: 86 LITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTG-RKENVEHWFG-----HPNFEIIHQDI 139
LITG G GS+L + L+ G+EV + + E V+H + +P F + + D+
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDL 64
Query: 140 -----VTPLFVEV--DEIY------HLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKR 186
+T + EV DE+Y H+A P Y + LGL K+
Sbjct: 65 SDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKK 124
Query: 187 VGAKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLS 246
+ ASTSE+YG + PQ ET P PR+ Y AK A + Y +
Sbjct: 125 T--RFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGMY 177
Query: 247 VRVARIFNTYGPR 259
+FN PR
Sbjct: 178 ACNGILFNHESPR 190
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 111/282 (39%), Gaps = 49/282 (17%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMG-HEVTVVDNFFTGRK------ENVEHWFGHPNFEII 135
R I++TGGAGF+GS++V L G ++ VVDN G K N+ + +F I
Sbjct: 47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLI- 105
Query: 136 HQDIVTPLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKILFAS 195
Q + F +V+ I+H + +S + + L + + L+AS
Sbjct: 106 -QIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS 162
Query: 196 TSEVYG-------DPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVR 248
++ YG + + +P +G+ + +DE R + L A ++ +
Sbjct: 163 SAATYGGRTSDFIESREYEKPLNVFGY-----SKFLFDEYVR--QILPEANSQ-----IV 210
Query: 249 VARIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGL 308
R FN YGPR + G + S + L + +S K F G
Sbjct: 211 GFRYFNVYGPR-EGHKGSMAS--VAFHLNTQLNNGESPKLFE----------------GS 251
Query: 309 GNQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSILAC 350
N R F YV D+ D + + + + NLG S A
Sbjct: 252 ENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTGRAESFQAV 293
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 110/280 (39%), Gaps = 49/280 (17%)
Query: 85 ILITGGAGFVGSHLVDKLMLMG-HEVTVVDNFFTGRK------ENVEHWFGHPNFEIIHQ 137
I++TGGAGF+GS++V L G ++ VVDN G K N+ + +F I Q
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLI--Q 59
Query: 138 DIVTPLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKILFASTS 197
+ F +V+ I+H + +S + + L + + L+AS++
Sbjct: 60 IMAGEEFGDVEAIFHEGAXSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSA 117
Query: 198 EVYG-------DPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVA 250
YG + + +P +G+ + +DE R + L A ++ +
Sbjct: 118 ATYGGRTSDFIESREYEKPLNVYGY-----SKFLFDEYVR--QILPEANSQ-----IVGF 165
Query: 251 RIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGN 310
R FN YGPR + G + S + L + +S K F G N
Sbjct: 166 RYFNVYGPR-EGHKGSMAS--VAFHLNTQLNNGESPKLFE----------------GSEN 206
Query: 311 QTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSILAC 350
R F YV D+ D + + + + NLG S A
Sbjct: 207 FKRDFVYVGDVADVNLWFLENGVSGIFNLGTGRAESFQAV 246
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 23/192 (11%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHW----FGHPN-FEII 135
S +R LITG G G++L L+ G+EV D R W G N +II
Sbjct: 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADR----RSGEFASWRLKELGIENDVKII 57
Query: 136 HQDIV-------TPLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVG 188
H D++ T V+ DE+Y+LA+ + P+ +L + V
Sbjct: 58 HMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVK 117
Query: 189 AKILF--ASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLS 246
F ASTSE++G + PQ E P PR+ Y AK + Y ++
Sbjct: 118 PDTKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVAKLFGHWITVNYREAYNMF 172
Query: 247 VRVARIFNTYGP 258
+FN P
Sbjct: 173 ACSGILFNHESP 184
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 81/199 (40%), Gaps = 29/199 (14%)
Query: 86 LITGGAGFVGSHLVDKLMLMGHEVTVV----DNFFTGRKENVEHWFGHP------NFEII 135
LITG G GS+L + L+ G+EV + +F TGR +EH + +P N ++
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGR---IEHLYKNPQAHIEGNMKLH 84
Query: 136 HQDI-----VTPLFVEVD--EIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVG 188
+ D+ + + EV EIY+L + + +L K G
Sbjct: 85 YGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCG 144
Query: 189 ----AKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHED 244
K ASTSE+YG + PQ ET P PR+ Y AK A + + +
Sbjct: 145 LINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKLYAYWIVVNFREAYN 199
Query: 245 LSVRVARIFNTYGPRMHMN 263
L +FN PR N
Sbjct: 200 LFAVNGILFNHESPRRGAN 218
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 86/211 (40%), Gaps = 38/211 (18%)
Query: 81 SKRRILITGGAGFVGSHLVDKLML-MGHEVTVVDNFFT--GRKENVE------------- 124
S R+L+ GGAG++GSH V L+ H V +VD+ G+ ++VE
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 125 --------HWFGHPNFEIIHQDIVTPLFVE---VDEIYHLASPASPPHYMFNPVXXXXXX 173
+ ++ ++D + +F +D + H+ + + + +P+
Sbjct: 61 GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNN 120
Query: 174 XXXXXXML-GLAKRVGAKILFASTSEVYGDPEVHPQPETYWGHVNPI------GPRACYD 226
+L + KI+F+S++ ++G+P + + + PI P + Y
Sbjct: 121 VVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTM----GSVSTNAEPIDINAKKSPESPYG 176
Query: 227 EAKRVAETLCYAYARHEDLSVRVARIFNTYG 257
E+K +AE + A + R FN G
Sbjct: 177 ESKLIAERMIRDCAEAYGIKGICLRYFNACG 207
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 22/203 (10%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
+I +TGG GF+G ++V+ + G+ ++ G K ++ + ++ + +D++ L
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSI-GNKAINDYEYRVSDYTL--EDLINQL 60
Query: 144 FVEVDEIYHLA----SPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAKILFASTSEV 199
+VD + HLA S + N + + + I++AST
Sbjct: 61 -NDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNI-------SNIVYASTISA 112
Query: 200 YGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPR 259
Y D P W P Y +K E + Y+R + L ++ R + YG
Sbjct: 113 YSDETSLP-----WNEKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYG-- 165
Query: 260 MHMNDGRVVSNFIIQALRNETIT 282
+ + ++ F QA E +T
Sbjct: 166 FNEKNNYXINRFFRQAFHGEQLT 188
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 104/281 (37%), Gaps = 44/281 (15%)
Query: 79 YQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQD 138
Y RIL+TGG+G VG + K++ G + D F K+ ++
Sbjct: 4 YFQSMRILVTGGSGLVGK-AIQKVVADGAGLPGEDWVFVSSKDA----------DLTDTA 52
Query: 139 IVTPLFVEVD--EIYHLASPASPPHYMFNPVXXXXXXXXXXXXM----LGLAKRVGA-KI 191
LF +V + HLA+ +F + M L A VGA K+
Sbjct: 53 QTRALFEKVQPTHVIHLAAMVGG---LFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKV 109
Query: 192 LFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVAR 251
+ ++ ++ D +P ET + P Y AKR+ + AY + +
Sbjct: 110 VSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVI 169
Query: 252 IFNTYGPRMHMN--DGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLG 309
N +GP + N DG V+ I + + S + T V+G G
Sbjct: 170 PTNVFGPHDNFNIEDGHVLPGLIHKV----HLAKSSGSALT--------------VWGTG 211
Query: 310 NQTRSFQYVTDLVDGLIALMNS-NYTLPV--NLGNPTEHSI 347
N R F Y DL I ++ N P+ ++G E SI
Sbjct: 212 NPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSI 252
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 104/281 (37%), Gaps = 44/281 (15%)
Query: 79 YQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQD 138
Y RIL+TGG+G VG + K++ G + D F K+ ++
Sbjct: 3 YFQSMRILVTGGSGLVGK-AIQKVVADGAGLPGEDWVFVSSKDA----------DLTDTA 51
Query: 139 IVTPLFVEVD--EIYHLASPASPPHYMFNPVXXXXXXXXXXXXM----LGLAKRVGA-KI 191
LF +V + HLA+ +F + M L A VGA K+
Sbjct: 52 QTRALFEKVQPTHVIHLAAMVGG---LFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKV 108
Query: 192 LFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVAR 251
+ ++ ++ D +P ET + P Y AKR+ + AY + +
Sbjct: 109 VSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVI 168
Query: 252 IFNTYGPRMHMN--DGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLG 309
N +GP + N DG V+ I + + S + T V+G G
Sbjct: 169 PTNVFGPHDNFNIEDGHVLPGLIHKV----HLAKSSGSALT--------------VWGTG 210
Query: 310 NQTRSFQYVTDLVDGLIALMNS-NYTLPV--NLGNPTEHSI 347
N R F Y DL I ++ N P+ ++G E SI
Sbjct: 211 NPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSI 251
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
R+L+ GG GF+G+ L L GHEVT+V
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVS 31
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPN----FEIIHQ 137
K R+ +TGG GF+GS ++ L+ G+ V RK +V P +
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNA 60
Query: 138 DIVTP-LFVEVDE----IYHLASP 156
D+ P F E I+H ASP
Sbjct: 61 DLSNPDSFAAAIEGCVGIFHTASP 84
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGH 107
K +ILI GG G++G+H+V + +GH
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGH 36
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGH 107
K +ILI GG G++G+H+V + +GH
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGH 36
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGH 107
K +ILI GG G++G+H+V + +GH
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGH 36
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGH 107
K +ILI GG G++G+H+V + +GH
Sbjct: 7 KSKILIFGGTGYIGNHMVKGSLKLGH 32
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI---- 139
R+L+TG AG VGS + L + HEV + D G E E EI+ D+
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHE--------EIVACDLADAQ 55
Query: 140 -VTPLFVEVDEIYHLAS 155
V L + D I HL
Sbjct: 56 AVHDLVKDCDGIIHLGG 72
>pdb|2A35|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
pdb|2A35|B Chain B, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
Length = 215
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 79 YQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEH 125
+ + +R+L+ G G G HL+D+++ E T+ RK EH
Sbjct: 2 HSTPKRVLLAGATGLTGEHLLDRIL---SEPTLAKVIAPARKALAEH 45
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 85 ILITGGAGFVGSHLVDKLMLMGHEV 109
+L+TG GFV SH+V++L+ G++V
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKV 38
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 85 ILITGGAGFVGSHLVDKLMLMGHEV 109
+L+TG GFV SH+V++L+ G++V
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKV 38
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTVV 112
K R+LI GG G++G +V+ + +GH V+
Sbjct: 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVL 34
>pdb|3NC3|A Chain A, Cyp134a1 Structure With A Closed Substrate Binding Loop
pdb|3NC3|B Chain B, Cyp134a1 Structure With A Closed Substrate Binding Loop
pdb|3NC5|A Chain A, Cyp134a1 Structure With An Open Substrate Binding Loop
pdb|3NC5|B Chain B, Cyp134a1 Structure With An Open Substrate Binding Loop
pdb|3NC6|A Chain A, Cyp134a1 1-Phenylimidazole Bound Structure
pdb|3NC6|B Chain B, Cyp134a1 1-Phenylimidazole Bound Structure
pdb|3NC7|A Chain A, Cyp134a1 2-Phenylimidazole Bound Structure
pdb|3NC7|B Chain B, Cyp134a1 2-Phenylimidazole Bound Structure
Length = 441
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 191 ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVA 250
I+F DPE QP+ + H +G ++ + A R L + H
Sbjct: 339 IVFCMIGAANRDPEAFEQPDVFNIHREDLGIKSAFSGAAR---HLAFGSGIH-------- 387
Query: 251 RIFNTYGPRMHMNDGRVVSNFIIQALRNETITSD 284
N G N+ +V+N ++ +RN + D
Sbjct: 388 ---NCVGTAFAKNEIEIVANIVLDKMRNIRLEED 418
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVV 112
++I++ G +GFVGS L+++ + G EVT V
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAV 34
>pdb|2IV3|A Chain A, Crystal Structure Of Avigt4, A Glycosyltransferase
Involved In Avilamycin A Biosynthesis
pdb|2IV3|B Chain B, Crystal Structure Of Avigt4, A Glycosyltransferase
Involved In Avilamycin A Biosynthesis
pdb|2IV3|C Chain C, Crystal Structure Of Avigt4, A Glycosyltransferase
Involved In Avilamycin A Biosynthesis
pdb|2IV3|D Chain D, Crystal Structure Of Avigt4, A Glycosyltransferase
Involved In Avilamycin A Biosynthesis
Length = 342
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 23/98 (23%)
Query: 53 IKILEEKLKSLDVRIPKK--YPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVT 110
++ L+ L ++ +R+P + SV Q Y GG +V ++L+D L+ +GHEV
Sbjct: 1 MRPLKVALVNIPLRVPGSDAWISVPPQGY---------GGIQWVVANLMDGLLELGHEVF 51
Query: 111 VVDN------------FFTGRKENVEHWFGHPNFEIIH 136
++ G E +E W + +++H
Sbjct: 52 LLGAPGSPAGRPGLTVVPAGEPEEIERWLRTADVDVVH 89
>pdb|1BDB|A Chain A, Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From
Pseudomonas Sp. Lb400
Length = 277
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 85 ILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
+LITGGA +G LVD+ + G +V V+D
Sbjct: 8 VLITGGASGLGRALVDRFVAEGAKVAVLD 36
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 51/228 (22%)
Query: 85 ILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPLF 144
+ +TG +GF+GS LV +L+ G+ V T K+ V+H P E H +
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKK-VKHLLDLPKAE-THLTLWKADL 65
Query: 145 VE---VDE-------IYHLASP-----ASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGA 189
+ DE ++H+A+P P + + P MLG+ K A
Sbjct: 66 ADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPT---------IEGMLGIMKSCAA 116
Query: 190 -----KILFASTSEVYGDPEVHPQP---ETYWGHVNPIGPRA----CYDEAKRVAETLCY 237
+++F S++ E H P E+ W + + Y +K +AE +
Sbjct: 117 AKTVRRLVFTSSAGTVNIQE-HQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAW 175
Query: 238 AYARHEDLSVRVARIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDS 285
YA+ ++ F T P + VV FI+ ++ IT+ S
Sbjct: 176 KYAKENNID------FITIIPTL------VVGPFIMSSMPPSLITALS 211
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGH 107
S+ RIL+ G G++G H+ + +GH
Sbjct: 3 SRSRILLIGATGYIGRHVAKASLDLGH 29
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 48 FANERIKILEEKLKSLDVRIPKKYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGH 107
N R+ IL+E LDV ++ + Q Q IL++ L D++ L+ H
Sbjct: 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI-H 220
Query: 108 EVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIV 140
T+V+ TG E ++ + N E + +++V
Sbjct: 221 NGTIVE---TGTVEELKERYKAQNIEEVFEEVV 250
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEV--TVVDNFFTGRKENVEHWFGHP---NFEIIH 136
K+ + GG GFV S LV L+ G+ V TV D ++ V H + +I
Sbjct: 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRD---PDNQKKVSHLLELQELGDLKIFR 65
Query: 137 QDIVTPLFVEV-----DEIYHLASPA-----SPPHYMFNP 166
D+ L E D ++H+A+P P + M P
Sbjct: 66 ADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKP 105
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 69/202 (34%), Gaps = 50/202 (24%)
Query: 85 ILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQ---DIVT 141
I+ITG GFVG +L K ++ H FE+ Q + +
Sbjct: 3 IVITGAKGFVGKNL---------------------KADLTSTTDHHIFEVHRQTKEEELE 41
Query: 142 PLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK--ILFASTSEV 199
++ D I HLA P H +L + R K IL +S+ +
Sbjct: 42 SALLKADFIVHLAGVNRPEH----DKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQA 97
Query: 200 YGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPR 259
D NP Y E+K E L YA +V + R N +G
Sbjct: 98 TQD--------------NP------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKW 137
Query: 260 MHMNDGRVVSNFIIQALRNETI 281
N V++ F + RNE I
Sbjct: 138 CKPNYNSVIATFCYKIARNEEI 159
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 69/202 (34%), Gaps = 50/202 (24%)
Query: 85 ILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQ---DIVT 141
I+ITG GFVG +L K ++ H FE+ Q + +
Sbjct: 3 IVITGAKGFVGKNL---------------------KADLTSTTDHHIFEVHRQTKEEELE 41
Query: 142 PLFVEVDEIYHLASPASPPHYMFNPVXXXXXXXXXXXXMLGLAKRVGAK--ILFASTSEV 199
++ D I HLA P H +L + R K IL +S+ +
Sbjct: 42 SALLKADFIVHLAGVNRPEH----DKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQA 97
Query: 200 YGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPR 259
D NP Y E+K E L YA +V + R N +G
Sbjct: 98 TQD--------------NP------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKW 137
Query: 260 MHMNDGRVVSNFIIQALRNETI 281
N V++ F + RNE I
Sbjct: 138 CKPNYNSVIATFCYKIARNEEI 159
>pdb|2Y93|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y93|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y99|A Chain A, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|2Y99|B Chain B, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|3ZV3|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV3|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV4|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV4|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV5|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV5|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV6|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
pdb|3ZV6|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
Length = 281
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 86 LITGGAGFVGSHLVDKLMLMGHEVTVVD 113
LITGGA +G LVD+ + G V V+D
Sbjct: 9 LITGGASGLGRALVDRFVAEGARVAVLD 36
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 347
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 102 LMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEI-IHQD 138
++ +GH++ + D FF K+ +H PN I IH D
Sbjct: 78 ILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHND 115
>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
pdb|4A27|B Chain B, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
Length = 349
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 181 LGLAKRVGAKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVA 232
L L K +G IL+ S++ V G+ + W V + P Y+E K +A
Sbjct: 225 LSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIA 276
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 67 IPKKYPSVKFQDYQ-SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVD-NFFTGRKENVE 124
IP P +K + S + F G + KL ++ ++ V++ N F + VE
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259
Query: 125 HWFGHPNFEIIHQDIVTPL 143
H N ++ D+ TPL
Sbjct: 260 INLAHNNLTLLPHDLFTPL 278
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 53/146 (36%), Gaps = 27/146 (18%)
Query: 190 KILFASTSEVYGDPEVHPQP----ETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDL 245
K+LF S +Y P++ QP E G + P Y AK LC +Y R
Sbjct: 101 KLLFLGASCIY--PKLAKQPMAESELLQGTLEPTNE--PYAIAKIAGIKLCESYNRQYGR 156
Query: 246 SVRVARIFNTYGPR--MHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFT 303
R N YGP H ++ V+ + R T+ S+
Sbjct: 157 DYRSVMPTNLYGPHDNFHPSNSHVIPALL---RRFHEATAQSAPDVV------------- 200
Query: 304 QVYGLGNQTRSFQYVTDLVDGLIALM 329
V+G G R F +V D+ I +M
Sbjct: 201 -VWGSGTPMREFLHVDDMAAASIHVM 225
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 35/220 (15%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGHEVTVV----DNFFTGRKENVEHWFGHPN---- 131
+ ++ LITG G GS+L + L+ G+EV + NF T R + H + P+
Sbjct: 26 EPRKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQR---INHIYIDPHNVNK 82
Query: 132 --FEIIHQDIVTPL-------FVEVDEIYHLASPA------SPPHYMFNPVXXXXXXXXX 176
++ + D+ ++ DE+Y+LA+ + P Y + V
Sbjct: 83 ALMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLE 142
Query: 177 XXXMLGLAKRVGAKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLC 236
+ K A +SE++G PQ ET P PR+ Y +K A
Sbjct: 143 AVRSHTIDSGRTVKYYQAGSSEMFGSTP-PPQSET-----TPFHPRSPYAASKCAAHWYT 196
Query: 237 YAYARHEDLSVRVARIFNTYGPRMHMNDGRVVSNFIIQAL 276
Y L +FN PR N V+ I +AL
Sbjct: 197 VNYREAYGLFACNGILFNHESPRRGEN---FVTRKITRAL 233
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 55 ILEEKLKSLDVRIPKKYPSVKFQDYQ---SKRRILITGGAGFVGSHLVDKLMLMGHEVTV 111
+ + + D +P + + D + KR +++ F+ L +KL GHEVT+
Sbjct: 499 LTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTI 558
Query: 112 V 112
V
Sbjct: 559 V 559
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 190 KILFASTSEVYGDPEVHPQP----ETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDL 245
K+LF +S +Y P++ QP E G + P Y AK LC +Y R
Sbjct: 101 KLLFLGSSCIY--PKLAKQPMAESELLQGTLEPTNE--PYAIAKIAGIKLCESYNRQYGR 156
Query: 246 SVRVARIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQV 305
R N YGP H N S+ I LR +F + V
Sbjct: 157 DYRSVMPTNLYGP--HDNFHPSNSHVIPALLR-------------RFHEATAQKAPDVVV 201
Query: 306 YGLGNQTRSFQYVTDLVDGLIALM 329
+G G R F +V D+ I +M
Sbjct: 202 WGSGTPMREFLHVDDMAAASIHVM 225
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 55 ILEEKLKSLDVRIPKKYPSVKFQDYQ---SKRRILITGGAGFVGSHLVDKLMLMGHEVTV 111
+ + + D +P + + D + KR +++ F+ L +KL GHEVT+
Sbjct: 499 LTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTI 558
Query: 112 V 112
V
Sbjct: 559 V 559
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 91 AGFVGSHLVDKLMLMGHEVTVVD-NFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
F G + KL +M +V++++ N F G VE H N + D+ TPL
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 56 LEEKLKSLDVRIPKKYPSVKFQDYQSKRRI---LITGGAGFVGSHLVDKLMLMGHEV 109
L + L L + +Y +D S R + L+TG GF+G++L++ L H +
Sbjct: 40 LPDNLSELQKIVXSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSHRI 96
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTV 111
G G +GS +V L+ MGH VTV
Sbjct: 37 GLGLMGSGIVSNLLKMGHTVTV 58
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 190 KILFASTSEVYGDPEVHPQP----ETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDL 245
K+LF +S +Y P++ QP E G + P Y AK LC +Y R
Sbjct: 101 KLLFLGSSCIY--PKLAKQPMAESELLQGTLEPTNE--PYAIAKIAGIKLCESYNRQYGR 156
Query: 246 SVRVARIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQV 305
R N YGP H N S+ I LR +F + V
Sbjct: 157 DYRSVMPTNLYGP--HDNFHPSNSHVIPALLR-------------RFHEATAQNAPDVVV 201
Query: 306 YGLGNQTRSFQYVTDLVDGLIALM 329
+G G R F +V D+ I +M
Sbjct: 202 WGSGTPMREFLHVDDMAAASIHVM 225
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 190 KILFASTSEVYGDPEVHPQP----ETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDL 245
K+LF +S +Y P++ QP E G + P Y AK LC +Y R
Sbjct: 101 KLLFLGSSCIY--PKLAKQPMAESELLQGTLEPTNE--PYAIAKIAGIKLCESYNRQYGR 156
Query: 246 SVRVARIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQV 305
R N YGP H N S+ I LR +F + V
Sbjct: 157 DYRSVMPTNLYGP--HDNFHPSNSHVIPALLR-------------RFHEATAQNAPDVVV 201
Query: 306 YGLGNQTRSFQYVTDLVDGLIALM 329
+G G R F +V D+ I +M
Sbjct: 202 WGSGTPMREFLHVDDMAAASIHVM 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,972,123
Number of Sequences: 62578
Number of extensions: 453411
Number of successful extensions: 1280
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1109
Number of HSP's gapped (non-prelim): 129
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)