RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14739
(360 letters)
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 471 bits (1213), Expect = e-168
Identities = 194/288 (67%), Positives = 228/288 (79%), Gaps = 22/288 (7%)
Query: 61 KSLDVRIPKKYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRK 120
++ + + ++RILITGGAGFVGSHL DKLM+ GHEVTVVDNFFTGRK
Sbjct: 6 HHHHHSSGRENLYFQGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK 65
Query: 121 ENVEHWFGHPNFEIIHQDIVTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINM 180
NVEHW GH NFE+I+ D+V PL++EVD+IYHLASPASPP+YM+NP+KT+KTNTIGT+NM
Sbjct: 66 RNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNM 125
Query: 181 LGLAKRVGAKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYA 240
LGLAKRVGA++L ASTSEVYGDPEVHPQ E YWGHVNPIGPRACYDE KRVAET+CYAY
Sbjct: 126 LGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYM 185
Query: 241 RHEDLSVRVARIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPH 300
+ E + VRVARIFNT+GPRMHMNDGRVVSNFI+QAL+ E +T
Sbjct: 186 KQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLT------------------ 227
Query: 301 SFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
VYG G+QTR+FQYV+DLV+GL+ALMNSN + PVNLGNP EH+IL
Sbjct: 228 ----VYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTIL 271
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 407 bits (1049), Expect = e-143
Identities = 68/285 (23%), Positives = 119/285 (41%), Gaps = 46/285 (16%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGH-EVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI--- 139
R+LI G GF+G+HL ++L+ H EV +D + + + HP+F + DI
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISIH 57
Query: 140 ---VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAKILFAST 196
+ + D + L + A+P Y NP++ + + + ++ + +I+F ST
Sbjct: 58 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 117
Query: 197 SEVYGDPEVHPQPETYWGH-VNPIG-PRACYDEAKRVAETLCYAYARHEDLSVRVARIFN 254
SEVYG E + V P+ PR Y +K++ + + +AY E L + R FN
Sbjct: 118 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 177
Query: 255 TYGPRMH------MNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGL 308
GPR+ + R ++ I+ + I +
Sbjct: 178 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIK----------------------LIDG 215
Query: 309 GNQTRSFQYVTDLVDGLIALMNSNYTL----PVNLGNP-TEHSIL 348
G Q R F + D ++ L ++ + +N+GNP E SI
Sbjct: 216 GKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIE 260
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 396 bits (1019), Expect = e-138
Identities = 65/304 (21%), Positives = 118/304 (38%), Gaps = 49/304 (16%)
Query: 66 RIPKKYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEH 125
+ + +++LI G GF+G HL +++ + T +
Sbjct: 8 HMGTLEAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTD---RLGD 64
Query: 126 WFGHPNFEIIHQDI------VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTIN 179
H DI V + D I L + A+P Y+ P++ + + +
Sbjct: 65 LVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLP 124
Query: 180 MLGLAKRVGAKILFASTSEVYG---DPEVHPQPETY-WGHVNPIGPRACYDEAKRVAETL 235
++ A + G ++F STSEVYG D + P +G +N PR Y +K++ + +
Sbjct: 125 IVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINK--PRWIYACSKQLMDRV 182
Query: 236 CYAYARHEDLSVRVARIFNTYGPRMH------MNDGRVVSNFIIQALRNETITSDSSKSF 289
+ Y L+ + R FN GP + RVV+ F+ +R E I+
Sbjct: 183 IWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENIS------- 234
Query: 290 TKFWDTLYIPHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTL----PVNLGNPT-E 344
+ G+Q R+F YV D + L+ ++ ++ + N+GNP
Sbjct: 235 ---------------LVDGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNN 279
Query: 345 HSIL 348
S+
Sbjct: 280 FSVR 283
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 391 bits (1006), Expect = e-136
Identities = 64/291 (21%), Positives = 118/291 (40%), Gaps = 37/291 (12%)
Query: 70 KYPSVKFQDY--QSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWF 127
Y ++ + Y +I ITG GF+ SH+ +L GH V D + E++
Sbjct: 15 TYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDM 71
Query: 128 GHPNFEIIHQDIVT---PLFVEVDEIYHLASPASPPHYMF-NPVKTIKTNTIGTINMLGL 183
F ++ ++ + VD +++LA+ ++ N + NT+ + NM+
Sbjct: 72 FCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEA 131
Query: 184 AKRVG-AKILFASTSEVYGDPEVHPQPETY--WGHVNPIGPRACYDEAKRVAETLCYAYA 240
A+ G + +AS++ +Y + + P P+ + K E LC Y
Sbjct: 132 ARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYN 191
Query: 241 RHEDLSVRVARIFNTYGPRMHMNDGR--VVSNFIIQALRNE-TITSDSSKSFTKFWDTLY 297
+ + R+ R N YGP GR + F +A +
Sbjct: 192 KDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFE--------------- 236
Query: 298 IPHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
++G G QTRSF ++ + V+G++ L S++ PVN+G+ S+
Sbjct: 237 -------MWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMN 280
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 344 bits (884), Expect = e-117
Identities = 69/302 (22%), Positives = 113/302 (37%), Gaps = 46/302 (15%)
Query: 68 PKKYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMG-HEVTVVDNFFTGRKENVEHW 126
P + + +++ GGAGFVGS+LV +L+ +G ++V VVDN + K NV
Sbjct: 18 GSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPD- 76
Query: 127 FGHPNFEIIHQDI-----VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINML 181
HP I + L E D ++HLA+ + +P+ + NT+ T+ +
Sbjct: 77 --HPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLY 134
Query: 182 GLAKRVGA--KILFASTSEVYGD-PEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYA 238
K K+++++ + + V+ + Y +K E
Sbjct: 135 ERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVY 194
Query: 239 YARHEDLSVRVARIFNTYGPRMHMNDGR-----------VVSNFIIQALRNETITSDSSK 287
Y + L AR N YGP + GR V FI +AL+ +
Sbjct: 195 YHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLP----- 249
Query: 288 SFTKFWDTLYIPHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNY-TLPVNLGNPTEHS 346
+ G TR F +V D+ +GLIA N+ + E S
Sbjct: 250 -----------------LENGGVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETS 292
Query: 347 IL 348
I
Sbjct: 293 IA 294
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 329 bits (847), Expect = e-112
Identities = 85/273 (31%), Positives = 117/273 (42%), Gaps = 40/273 (14%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVE---HWFGHPNFEIIHQ 137
K RILITGGAGF+G HL L+ G EVTV+D+ E + P E+ +
Sbjct: 6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEER 65
Query: 138 DIVTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGA-KILFAST 196
D+ +V +YHLAS S P P+ + N ++L L VG K++ ST
Sbjct: 66 DL-----SDVRLVYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPKVVVGST 119
Query: 197 SEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDL-SVRVARIFNT 255
EVYG + P PE +P+ PR+ Y +K E + A+ R V + R FN
Sbjct: 120 CEVYGQADTLPTPED-----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNV 174
Query: 256 YGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSF 315
YGP + +V L + V G G Q R F
Sbjct: 175 YGPGERPD--ALVPRLCANLLTRNELP----------------------VEGDGEQRRDF 210
Query: 316 QYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
Y+TD+VD L+AL N VN G+ S+
Sbjct: 211 TYITDVVDKLVALANRPLPSVVNFGSGQSLSVN 243
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 280 bits (720), Expect = 2e-93
Identities = 86/274 (31%), Positives = 131/274 (47%), Gaps = 43/274 (15%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
RI++TGGAGF+GSHLVDKL+ +G+EV VVDN +GR+E V +P+ E+ +D+
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKDYS 56
Query: 144 FVE---VDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-ILFASTSEV 199
+ D ++H A+ P+ N + T N+L A++ G + ++FAS+S V
Sbjct: 57 WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTV 116
Query: 200 YGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPR 259
YGD +V P PE P P + Y AK E +C YAR + R N GPR
Sbjct: 117 YGDADVIPTPEEE-----PYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 171
Query: 260 MHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYVT 319
+ V+ +FI++ RN + +V G G Q +S+ YV
Sbjct: 172 L---RHGVIYDFIMKLRRNPNV---------------------LEVLGDGTQRKSYLYVR 207
Query: 320 DLVDGLIALMNSNYTL-----PVNLGNPTEHSIL 348
D V+ +A + +N+GN +L
Sbjct: 208 DAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVL 241
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 220 bits (562), Expect = 3e-69
Identities = 68/296 (22%), Positives = 117/296 (39%), Gaps = 44/296 (14%)
Query: 70 KYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHW--- 126
+Y ++ + + LITG AGF+GS+L++ L+ + +V +DNF TG + N++
Sbjct: 15 RYEELRKELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSL 74
Query: 127 ---FGHPNFEIIHQDI-----VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTI 178
NF+ I DI VD + H A+ S P + +P+ + TN G +
Sbjct: 75 VSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFL 134
Query: 179 NMLGLAKRVGAK-ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCY 237
NML A+ + +A++S YGD P+ E G P+ P Y K V E
Sbjct: 135 NMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGK--PLSP---YAVTKYVNELYAD 189
Query: 238 AYARHEDLSVRVARIFNTYGPRM--HMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDT 295
++R S R FN +G R + V+ + ++ + +
Sbjct: 190 VFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVY------------- 236
Query: 296 LYIPHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTLP---VNLGNPTEHSIL 348
+ G G +R F Y+ + V + + N+ S+
Sbjct: 237 ---------INGDGETSRDFCYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLN 283
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 215 bits (550), Expect = 5e-68
Identities = 52/271 (19%), Positives = 91/271 (33%), Gaps = 47/271 (17%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
+I +TGG GF+G ++V+ + G+ ++ + N ++E D
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAIN--------DYEYRVSDYTLED 55
Query: 144 FVE----VDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-ILFASTSE 198
+ VD + HLA+ + N I T N+ I++AST
Sbjct: 56 LINQLNDVDAVVHLAATRGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTIS 111
Query: 199 VYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGP 258
Y D P E P Y +K E + Y+R + L ++ R + YG
Sbjct: 112 AYSDETSLPWNEKE-----LPLPDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGF 166
Query: 259 RMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYV 318
N+ +++ F QA E +T ++ R F Y
Sbjct: 167 NEK-NNY-MINRFFRQAFHGEQLT----------------------LHANSVAKREFLYA 202
Query: 319 TDLVDGLIALMNSNYTLPV-NLGNPTEHSIL 348
D +I + N+G+ +
Sbjct: 203 KDAAKSVIYALKQEKVSGTFNIGSGDALTNY 233
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 211 bits (540), Expect = 2e-66
Identities = 74/272 (27%), Positives = 121/272 (44%), Gaps = 43/272 (15%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI---- 139
I++TGGAGF+GSH+VDKL +E+ V+DN +G +E V + ++ D+
Sbjct: 3 LIVVTGGAGFIGSHVVDKL-SESNEIVVIDNLSSGNEEFV-----NEAARLVKADLAADD 56
Query: 140 VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-ILFASTSE 198
+ +E++H+A+ NP + + N + T +L ++ G I+F STS
Sbjct: 57 IKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTST 116
Query: 199 VYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGP 258
VYG+ +V P PE Y +PI Y +K E L +Y D+ + R N G
Sbjct: 117 VYGEAKVIPTPEDY--PTHPISL---YGASKLACEALIESYCHTFDMQAWIYRFANVIGR 171
Query: 259 RMHMNDGRVVSNFIIQALRN-ETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQY 317
R V+ +FI++ RN E + + G G Q +S+ Y
Sbjct: 172 RS---THGVIYDFIMKLKRNPEELE----------------------ILGNGEQNKSYIY 206
Query: 318 VTDLVDG-LIALMNSNYTLPVNLGNPTEHSIL 348
++D VD L L N+G+ + +
Sbjct: 207 ISDCVDAMLFGLRGDERVNIFNIGSEDQIKVK 238
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 200 bits (512), Expect = 8e-62
Identities = 72/296 (24%), Positives = 118/296 (39%), Gaps = 44/296 (14%)
Query: 70 KYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHW--- 126
+Y + Q S + LITG AGF+GS+L++KL+ + V +DNF TG + N++
Sbjct: 13 RYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTL 72
Query: 127 ---FGHPNFEIIHQDI-----VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTI 178
F I DI + VD + H A+ S P + +P+ T TN G +
Sbjct: 73 VSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFL 132
Query: 179 NMLGLAKRVGAK-ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCY 237
N+L AK + +A++S YGD P+ E G+ P+ P Y K V E
Sbjct: 133 NILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGN--PLSP---YAVTKYVNEIYAQ 187
Query: 238 AYARHEDLSVRVARIFNTYGPRM--HMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDT 295
YAR R FN +G R + V+ + L+ + +
Sbjct: 188 VYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVY------------- 234
Query: 296 LYIPHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTLP---VNLGNPTEHSIL 348
+ G G +R F Y+ +++ I + + N+ ++
Sbjct: 235 ---------INGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLN 281
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 199 bits (507), Expect = 2e-58
Identities = 69/308 (22%), Positives = 128/308 (41%), Gaps = 46/308 (14%)
Query: 60 LKSLDVRIPKKYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMG-HEVTVVDNFFTG 118
++L + + S + + R+LI G GF+G+HL ++L+ +EV +D
Sbjct: 293 AQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI---- 348
Query: 119 RKENVEHWFGHPNFEIIHQDI------VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKT 172
+ + + HP+F + DI + + D + L + A+P Y NP++ +
Sbjct: 349 GSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFEL 408
Query: 173 NTIGTINMLGLAKRVGAKILFASTSEVYGDPEVHPQPETYWGHV-NPIG-PRACYDEAKR 230
+ + ++ + +I+F STSEVYG E + + P+ PR Y +K+
Sbjct: 409 DFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQ 468
Query: 231 VAETLCYAYARHEDLSVRVARIFNTYGPRM------HMNDGRVVSNFIIQALRNETITSD 284
+ + + +AY E L + R FN GPR+ + R ++ I+ + I
Sbjct: 469 LLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIK-- 526
Query: 285 SSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYVTDLVDGLIALM-NSNYTLP---VNLG 340
+ G Q R F + D ++ L ++ N+ +N+G
Sbjct: 527 --------------------LIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIG 566
Query: 341 NPT-EHSI 347
NP E SI
Sbjct: 567 NPENEASI 574
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 184 bits (469), Expect = 9e-56
Identities = 59/290 (20%), Positives = 103/290 (35%), Gaps = 55/290 (18%)
Query: 70 KYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGH 129
+ S +++ ITG G +GSH+ + L+ G +V +DNF TGR+E+++ H
Sbjct: 9 HHSSGLVPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKD---H 65
Query: 130 PNFEIIHQDI-----VTPLF--VEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLG 182
PN + I V L ++ D + H A+ P + TN +G N++
Sbjct: 66 PNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPD---DWYNDTLTNCVGGSNVVQ 122
Query: 183 LAKRVGAK-ILFASTSEVYGD-PEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYA 240
AK+ ++ T+ YG P P + NP + Y +K E Y
Sbjct: 123 AAKKNNVGRFVYFQTALCYGVKPIQQPVRLDH--PRNP--ANSSYAISKSANED----YL 174
Query: 241 RHEDLSVRVARIFNTYGPRMHMNDGR--VVSNFIIQALRNETITSDSSKSFTKFWDTLYI 298
+ L R+ N GPR + F + +
Sbjct: 175 EYSGLDFVTFRLANVVGPR-----NVSGPLPIFFQRLSEGKKCF---------------- 213
Query: 299 PHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
+ R F +V DL + ++ + + T+ +I
Sbjct: 214 ---------VTKARRDFVFVKDLARATVRAVDGVGHGAYHFSSGTDVAIK 254
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 180 bits (458), Expect = 1e-53
Identities = 68/291 (23%), Positives = 113/291 (38%), Gaps = 52/291 (17%)
Query: 77 QDYQSKRRILITGGAGFVGSHLVDKLMLMG--HEVTVVDNFFTGRK------ENVEHWFG 128
D + ILITGGAGFVGS+L +V V+D F + ++ H+
Sbjct: 5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKN 64
Query: 129 HPNF--EIIHQDIVTPLFVE------VDEIYHLASPASPPHYMFNPVKTIKTNTIGTINM 180
F E+I DI PL + D ++H A+ + M N +KTN +N+
Sbjct: 65 LIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNL 122
Query: 181 LGLAKRVGAKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYA 240
L +A+ AK+++AS++ VYG+ + P P Y +K + + +
Sbjct: 123 LEIARSKKAKVIYASSAGVYGNTKA-PNVVG-----KNESPENVYGFSKLCMD--EFVLS 174
Query: 241 RHEDLSVRVARIFNTYGPRMHMNDGR---VVSNFIIQALRNETITSDSSKSFTKFWDTLY 297
D R FN YGPR + +V + A+ + +
Sbjct: 175 HSNDNVQVGLRYFNVYGPREF-YKEKTASMVLQLALGAMAFKEVK--------------- 218
Query: 298 IPHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
++ G Q R F Y+ D++ + M + + N+G S
Sbjct: 219 -------LFEFGEQLRDFVYIEDVIQANVKAMKAQKSGVYNVGYSQARSYN 262
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 175 bits (446), Expect = 2e-52
Identities = 76/281 (27%), Positives = 116/281 (41%), Gaps = 49/281 (17%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
R+L+TGGAGF+GSH+V+ L+ G EV V+DN TG++ENV D+
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRDKE 56
Query: 144 FVE-------VDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGA-KILFAS 195
VE + H A+ AS + +PV + N +G +N+L ++ G K++FAS
Sbjct: 57 GVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFAS 116
Query: 196 TSE-VYGD-PEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIF 253
T +YG+ PE ET+ P P Y +K E Y + L R
Sbjct: 117 TGGAIYGEVPEGERAEETW--PPRPKSP---YAASKAAFEHYLSVYGQSYGLKWVSLRYG 171
Query: 254 NTYGPRM-HMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGL---- 308
N YGPR + VV+ F + L+ +T +Y
Sbjct: 172 NVYGPRQDPHGEAGVVAIFAERVLKGLPVT----------------------LYARKTPG 209
Query: 309 -GNQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
R + YV D+ + + S + N+G H+
Sbjct: 210 DEGCVRDYVYVGDVAEAHALALFSLEGI-YNVGTGEGHTTR 249
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 171 bits (436), Expect = 1e-51
Identities = 56/242 (23%), Positives = 83/242 (34%), Gaps = 41/242 (16%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI--- 139
R+L+TG AG VGS + L + HEV + D G E + EI+ D+
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEA--------HEEIVACDLADA 54
Query: 140 --VTPLFVEVDEIYHLA--SPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-ILFA 194
V L + D I HL S P + ++ N IG N+ A+ +G I+FA
Sbjct: 55 QAVHDLVKDCDGIIHLGGVSVERPWN------DILQANIIGAYNLYEAARNLGKPRIVFA 108
Query: 195 STSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFN 254
S++ G + +T P Y +K E L Y D+ RI +
Sbjct: 109 SSNHTIGYYPRTTRIDTEVP-RRPDSL---YGLSKCFGEDLASLYYHKFDIETLNIRIGS 164
Query: 255 TYGPRM-HMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTR 313
+ +S L + T VYG T
Sbjct: 165 CFPKPKDARMMATWLSVDDFMRLMKRAFVAPKLG--------------CTVVYGASANTE 210
Query: 314 SF 315
S+
Sbjct: 211 SW 212
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 171 bits (435), Expect = 6e-51
Identities = 57/273 (20%), Positives = 96/273 (35%), Gaps = 39/273 (14%)
Query: 85 ILITGGAGFVGSHLVDKLMLMG-HEVTVVDNFFTGRK-ENVEHWFGHPNFEIIHQDIVTP 142
I++TGGAGF+GS++V L G ++ VVDN G K N+ + + +D +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD--LNIADYMDKEDFLIQ 59
Query: 143 LFVE-----VDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAKILFASTS 197
+ V+ I+H + +S + + + N + +L L+AS++
Sbjct: 60 IMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLYASSA 117
Query: 198 EVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYG 257
YG + P+ Y +K + + + + R FN YG
Sbjct: 118 ATYGGRTSDFIESR--EYEKPLNV---YGYSKFLFDEYVRQILPEANSQIVGFRYFNVYG 172
Query: 258 PRM-HMNDGR-VVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSF 315
PR H V + Q E+ G N R F
Sbjct: 173 PREGHKGSMASVAFHLNTQLNNGESPKL---------------------FEGSENFKRDF 211
Query: 316 QYVTDLVDGLIALMNSNYTLPVNLGNPTEHSIL 348
YV D+ D + + + + NLG S
Sbjct: 212 VYVGDVADVNLWFLENGVSGIFNLGTGRAESFQ 244
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 172 bits (437), Expect = 8e-51
Identities = 65/322 (20%), Positives = 112/322 (34%), Gaps = 48/322 (14%)
Query: 36 SPLITRLRGDLNFANERIKILEEKLKSLDVRIPKKYPSVKFQDYQSKRRILITGGAGFVG 95
S L+ R G A + + + + S D+ R I++TGGAGF+G
Sbjct: 9 SGLVPRGSGMKETAAAKFE--RQHMDSPDL-------GTGGGSGIEGRMIIVTGGAGFIG 59
Query: 96 SHLVDKLMLMG-HEVTVVDNFFTGRK-ENVEHWFGHPNFEIIHQDIVTPLFVE-----VD 148
S++V L G ++ VVDN G K N+ + + +D + + V+
Sbjct: 60 SNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKEDFLIQIMAGEEFGDVE 117
Query: 149 EIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAKILFASTSEVYGDPEVHPQ 208
I+H + +S + + + N + +L L+AS++ YG
Sbjct: 118 AIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFI 175
Query: 209 PETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPRM-HMNDGR- 266
+ P+ + +K + + + + R FN YGPR H
Sbjct: 176 ESRE--YEKPLNV---FGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMAS 230
Query: 267 VVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYVTDLVDGLI 326
V + Q E+ L+ G N R F YV D+ D +
Sbjct: 231 VAFHLNTQLNNGESP-------------KLF--------EGSENFKRDFVYVGDVADVNL 269
Query: 327 ALMNSNYTLPVNLGNPTEHSIL 348
+ + + NLG S
Sbjct: 270 WFLENGVSGIFNLGTGRAESFQ 291
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 171 bits (435), Expect = 2e-50
Identities = 50/268 (18%), Positives = 82/268 (30%), Gaps = 68/268 (25%)
Query: 84 RILITGGAGFVGSHLVDKLMLMG-HEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTP 142
I+ITG GFVG +L L H + V ++ +
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTK-------------------EEELES 42
Query: 143 LFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAKILFASTSEVYGD 202
++ D I HLA P + + N ++L + R K +S +
Sbjct: 43 ALLKADFIVHLAGVNRPE----HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQAT 98
Query: 203 PEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPRMHM 262
+ NP Y E+K E L YA +V + R N +G
Sbjct: 99 QD------------NP------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKP 140
Query: 263 NDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYVTDLV 322
N V++ F + RNE I N + YV D+V
Sbjct: 141 NYNSVIATFCYKIARNEEIQ-----------------------VNDRNVELTLNYVDDIV 177
Query: 323 DGLIALMNSNYTL---PVNLGNPTEHSI 347
+ + T+ + N + ++
Sbjct: 178 AEIKRAIEGTPTIENGVPTVPNVFKVTL 205
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 167 bits (425), Expect = 4e-49
Identities = 63/278 (22%), Positives = 99/278 (35%), Gaps = 60/278 (21%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
RILITGGAG +GS+L++ + GHE+ V+DNF TG++E + +I +
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPP---VAGLSVIEGSVTDAG 78
Query: 144 FVE-------VDEIYHLA----SPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-I 191
+E + H A P N G+IN+ A + G K +
Sbjct: 79 LLERAFDSFKPTHVVHSAAAYKDPDDWAEDAAT-------NVQGSINVAKAASKAGVKRL 131
Query: 192 LFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVAR 251
L T+ YG P P P P P Y +K E D+ V R
Sbjct: 132 LNFQTALCYGRPATVPIPIDS-----PTAPFTSYGISKTAGEAFLMMS----DVPVVSLR 182
Query: 252 IFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQ 311
+ N GPR+ + + F + + + + +
Sbjct: 183 LANVTGPRLAIG---PIPTFYKRLKAGQ------------------------KCFC-SDT 214
Query: 312 TRSFQYVTDLVDG-LIALMNSNYTLPVNLGNPTEHSIL 348
R F ++D + ++L T N+ HSI
Sbjct: 215 VRDFLDMSDFLAIADLSLQEGRPTGVFNVSTGEGHSIK 252
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 160 bits (408), Expect = 6e-47
Identities = 46/254 (18%), Positives = 78/254 (30%), Gaps = 34/254 (13%)
Query: 84 RILITGGAGFVGSHLVDKLM-LMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTP 142
+ILI G G +G+ L KL L G E + + + V + + +
Sbjct: 4 KILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNS-GPFEVVNALDFNQIEH 62
Query: 143 LFVE--VDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVG-AKILFASTSEV 199
L + +IY +A+ S NP N ++L LAK KI + S+ V
Sbjct: 63 LVEVHKITDIYLMAALLS-ATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAV 121
Query: 200 YGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPR 259
+G + P Y +K+ E C Y + VR R
Sbjct: 122 FGPTTPKENTP----QYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWS 177
Query: 260 MHMNDGR--VVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQY 317
G + +A+ ++ + Y
Sbjct: 178 TPPGGGTTDYAVDIFYKAIADKKYE----------------------CFLSSETKMPMMY 215
Query: 318 VTDLVDGLIALMNS 331
+ D +D I +M +
Sbjct: 216 MDDAIDATINIMKA 229
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 158 bits (402), Expect = 5e-46
Identities = 52/254 (20%), Positives = 86/254 (33%), Gaps = 39/254 (15%)
Query: 85 ILITGGAGFVGSHLVDKLMLM-GHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
IL+TG +G +G+ LV L G + + + ++ ++ ++D +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITL----DVSNRDEIDRA 57
Query: 144 FVE--VDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGA-KILFASTSEVY 200
+ +D I+HLA S +P K N GT N+L AK+ K++ ST V+
Sbjct: 58 VEKYSIDAIFHLAGILS-AKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVF 116
Query: 201 G-DPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPR 259
G + + P PR + K AE L Y L VR R +
Sbjct: 117 GPETPKNKVPSIT-----ITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYK 171
Query: 260 MHMNDG--RVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQY 317
G A++ E Y N+ Y
Sbjct: 172 AEPTAGTTDYAVEIFYYAVKREKYK----------------------CYLAPNRALPMMY 209
Query: 318 VTDLVDGLIALMNS 331
+ D + L+ L +
Sbjct: 210 MPDALKALVDLYEA 223
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 151 bits (383), Expect = 8e-44
Identities = 48/244 (19%), Positives = 83/244 (34%), Gaps = 41/244 (16%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI- 139
+ +R+L+TG AG +G + ++L M + + D ++ PN E + D+
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADL------SPLDPA--GPNEECVQCDLA 53
Query: 140 ----VTPLFVEVDEIYHLA--SPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-IL 192
V + D I HL S P + ++ N IG N+ A+ G I+
Sbjct: 54 DANAVNAMVAGCDGIVHLGGISVEKPFE------QILQGNIIGLYNLYEAARAHGQPRIV 107
Query: 193 FASTSEVYGD-PEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVAR 251
FAS++ G P+ P P Y +K E L Y + R
Sbjct: 108 FASSNHTIGYYPQTERLGPDV-----PARPDGLYGVSKCFGENLARMYFDKFGQETALVR 162
Query: 252 IFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQ 311
I + N+ R++S + D + + V+G
Sbjct: 163 IGSCTPEP---NNYRMLSTWFSHD--------DFVSLIEAVFRAPVLGCPV--VWGASAN 209
Query: 312 TRSF 315
+
Sbjct: 210 DAGW 213
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 144 bits (365), Expect = 2e-40
Identities = 48/267 (17%), Positives = 77/267 (28%), Gaps = 54/267 (20%)
Query: 84 RILITGGAGFVGSHLVDKLMLMG-------HEVTVVDNFFTGRKENVEHWFGHPNFEIIH 136
I I G AG VG L +L+ G + T++D F +
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF-----SGAVDARA 70
Query: 137 QDIVTPLFVE------VDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGA- 189
D+ P E D I+HLA+ S + K + N GT + +
Sbjct: 71 ADLSAPGEAEKLVEARPDVIFHLAAIVSGEA-ELDFDKGYRINLDGTRYLFDAIRIANGK 129
Query: 190 -----KILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHED 244
+++F S+ V+G P +P P+ + P Y K + E L Y+R
Sbjct: 130 DGYKPRVVFTSSIAVFGAPLPYPIPDEF-----HTTPLTSYGTQKAICELLLSDYSRRGF 184
Query: 245 LSVRVARIFNTYGPRMHMNDGR--VVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSF 302
R+ N SN + + L +
Sbjct: 185 FDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAV-------------------- 224
Query: 303 TQVYGLGNQTRSFQYVTDLVDGLIALM 329
+ + V LI
Sbjct: 225 --LPVPESIRHWHASPRSAVGFLIHGA 249
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 132 bits (334), Expect = 2e-35
Identities = 55/323 (17%), Positives = 88/323 (27%), Gaps = 81/323 (25%)
Query: 77 QDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKEN-------------- 122
+ R+++ GG G+ G L +EV +VDN ++
Sbjct: 6 HHHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIH 65
Query: 123 ----VEHWFGHPNFEIIHQDI-----VTPLFVE--VDEIYHLASPASPPHYMFNP---VK 168
+ E+ DI + F D + H S P+ M + V
Sbjct: 66 DRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVY 125
Query: 169 TIKTNTIGTINMLGLAKR--VGAKILFASTSEVYGDPEVHPQPETY---------WGHVN 217
T N IGT+N+L K ++ T YG P + E Y
Sbjct: 126 TQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEGYITITHNGRTDTLPY 184
Query: 218 PIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPRMH---------------M 262
P + Y +K + + YG +
Sbjct: 185 PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDA 244
Query: 263 NDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYVTDLV 322
G ++ F +QA +T VYG G QTR + + D V
Sbjct: 245 VFGTALNRFCVQAAVGHPLT----------------------VYGKGGQTRGYLDIRDTV 282
Query: 323 DGLIA----LMNSNYTLPVNLGN 341
+ + N
Sbjct: 283 QCVEIAIANPAKAGEFRVFNQFT 305
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 117 bits (295), Expect = 3e-30
Identities = 71/278 (25%), Positives = 110/278 (39%), Gaps = 55/278 (19%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFF-TGRKENVEHWFGHPNFEIIHQDI-- 139
++LITGG GF+GS+L + G ++ V DN G +N+ NFE +H DI
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 61
Query: 140 ---VTPLFVE--VDEIYHLA-------SPASPPHYMFNPVKTIKTNTIGTINMLGLAKR- 186
VT L + D +HLA S + NP + N GT+N+L ++
Sbjct: 62 KNDVTRLITKYMPDSCFHLAGQVAMTTS-------IDNPCMDFEINVGGTLNLLEAVRQY 114
Query: 187 -VGAKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEA------------KRVAE 233
I+++ST++VYGD E + + YDE+ K A+
Sbjct: 115 NSNCNIIYSSTNKVYGDLE-QYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAAD 173
Query: 234 TLCYAYARHEDLSVRVARIFNTYGPRMH-MNDGRVVSNFIIQALRNETITSDSSKSFTKF 292
YAR L+ V R + YG R D V F +A+ + + +K FT
Sbjct: 174 QYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIK---NGINKPFT-- 228
Query: 293 WDTLYIPHSFTQVYGLGNQTRSFQYVTDLVDGLIALMN 330
+ G G Q R + D++ +
Sbjct: 229 ------------ISGNGKQVRDVLHAEDMISLYFTALA 254
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 108 bits (272), Expect = 4e-27
Identities = 32/262 (12%), Positives = 66/262 (25%), Gaps = 52/262 (19%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI- 139
+ + + G G +G H + GH++ + R + + E ++
Sbjct: 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVL-----IHRPSSQIQRLAYLEPECRVAEML 66
Query: 140 ----VTPLFVEVDEIYHLASPAS----PPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK- 190
+ +D + A + T +
Sbjct: 67 DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEV------ASALGQTNPFYAACLQARVPR 120
Query: 191 ILFASTSEVYG-DPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRV 249
IL+ ++ P+ P E + P ++ Y K + AR L V +
Sbjct: 121 ILYVGSAYAMPRHPQGLPGHEGLFYDSLP-SGKSSYVLCKWALDEQAREQAR-NGLPVVI 178
Query: 250 ARIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFTQVYGLG 309
G D + +I A+ N +T
Sbjct: 179 GIPGMVLGEL----DIGPTTGRVITAIGNGEMT------------------------HYV 210
Query: 310 NQTRSFQYVTDLVDGLIALMNS 331
R+ + GL+ +
Sbjct: 211 AGQRNVIDAAEAGRGLLMALER 232
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 100 bits (251), Expect = 3e-24
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 85 ILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI----- 139
ILI GGAG++GSH V KL+ G V VVDN TG ++ + + + D+
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI-----TEGAKFYNGDLRDKAF 58
Query: 140 VTPLFVE--VDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-ILFAST 196
+ +F + ++ + H A+ + M P++ N G + +L + +F+ST
Sbjct: 59 LRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSST 118
Query: 197 SEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFN 254
+ YG+ +V E NP Y E K E + + Y++ +L ++ R FN
Sbjct: 119 AATYGEVDVDLITEET--MTNPTNT---YGETKLAIEKMLHWYSQASNLRYKIFRYFN 171
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 93.0 bits (232), Expect = 1e-21
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 56/257 (21%)
Query: 84 RILITGGAGFVGSHLV------DKLMLMGHEVTVVDNF-FTGRKENVEHWFGHPNFEIIH 136
R+L+TGGAGF+GSH V + EV V+D+ + G + N+ P +H
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 137 QDI-----VTPLFVEVDEIYHLA-------SPASPPHYMFNPVKTIKTNTIGTINMLGLA 184
DI + VD I H A S A + +TN GT +L A
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVF-------TETNVQGTQTLLQCA 114
Query: 185 KRVGA-KILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHE 243
G +++ ST++VYG W +P+ P + Y +K ++ + AY R
Sbjct: 115 VDAGVGRVVHVSTNQVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY 169
Query: 244 DLSVRVARIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYIPHSFT 303
L VR+ R N YGP H +++ F+ L T +P
Sbjct: 170 GLDVRITRCCNNYGPYQHPE--KLIPLFVTNLLDGGT-----------------LP---- 206
Query: 304 QVYGLGNQTRSFQYVTD 320
+YG G R + + D
Sbjct: 207 -LYGDGANVREWVHTDD 222
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 92.6 bits (231), Expect = 2e-21
Identities = 64/265 (24%), Positives = 103/265 (38%), Gaps = 69/265 (26%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGH---EVTVVDNF-FTGRKENVEHWFGHPNFEIIH 136
++L+TGG GF+GS+ + + +L H EV +D + N++ P + +
Sbjct: 2 HSMKLLVTGGMGFIGSNFI-RYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVK 60
Query: 137 QDI-----VTPLFVEVDEIYHLA-------SPASPPHYMFNPVKTIKTNTIGTINMLGLA 184
D+ V L +VD + HLA S +SP +F + +N IGT +L
Sbjct: 61 GDVADYELVKELVRKVDGVVHLAAESHVDRSISSP--EIF-----LHSNVIGTYTLLESI 113
Query: 185 KRVGAKILF--ASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARH 242
+R ++ F ST EVYGD + + + + P + Y K ++ L + R
Sbjct: 114 RRENPEVRFVHVSTDEVYGD-----ILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRT 168
Query: 243 EDLSVRVARIFNTYGPRMH-------MNDGRVVSNFIIQALRNETITSDSSKSFTKFWDT 295
+L+ + R N YGP II+A I
Sbjct: 169 YNLNASITRCTNNYGPYQFPEKLIPKT---------IIRASLGLKI-------------- 205
Query: 296 LYIPHSFTQVYGLGNQTRSFQYVTD 320
P +YG G R + YV D
Sbjct: 206 ---P-----IYGTGKNVRDWLYVED 222
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 85.7 bits (213), Expect = 6e-19
Identities = 57/204 (27%), Positives = 83/204 (40%), Gaps = 32/204 (15%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGH---EVTVVDNF-FTGRKENVEHWFGHPNFEIIH 136
+ I++TGGAGF+GS+ V + H VTV+D + G K N+E E++
Sbjct: 3 QFKNIIVTGGAGFIGSNFV-HYVYNNHPDVHVTVLDKLTYAGNKANLEA-ILGDRVELVV 60
Query: 137 QDI-----VTPLFVEVDEIYHLA-------SPASPPHYMFNPVKTIKTNTIGTINMLGLA 184
DI V L + D I H A S P + I TN IGT +L A
Sbjct: 61 GDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPF-------IHTNFIGTYTLLEAA 113
Query: 185 KRVGAKILFASTSEVYGD-------PEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCY 237
++ + ST EVYGD P P + P + Y K ++ +
Sbjct: 114 RKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVK 173
Query: 238 AYARHEDLSVRVARIFNTYGPRMH 261
A+ R + ++ N YGP H
Sbjct: 174 AWVRSFGVKATISNCSNNYGPYQH 197
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 84.9 bits (211), Expect = 9e-19
Identities = 53/199 (26%), Positives = 75/199 (37%), Gaps = 25/199 (12%)
Query: 72 PSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPN 131
+ R LITG AGFVG +L + L EV + PN
Sbjct: 2 RGSHHHHHHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAK---------LPN 52
Query: 132 FEIIHQDI-----VTPLFVEV--DEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLA 184
E+I DI V + ++ D I+HLA+ +S N T TN GT+++L
Sbjct: 53 VEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAV 112
Query: 185 KRVGAKILF--ASTSEVYG--DPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYA 240
+ +SE YG PE P E N + P + Y +K L Y
Sbjct: 113 RDSNLDCRILTIGSSEEYGMILPEESPVSEE-----NQLRPMSPYGVSKASVGMLARQYV 167
Query: 241 RHEDLSVRVARIFNTYGPR 259
+ + + R FN GP
Sbjct: 168 KAYGMDIIHTRTFNHIGPG 186
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 84.8 bits (211), Expect = 1e-18
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 48/201 (23%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNF-------------FTGRKENVEHWF 127
+K IL+TGGAG++GSH +L+ G++V + DN TG+
Sbjct: 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKT------- 56
Query: 128 GHPNFE---IIHQDIVTPLFVE--VDEIYHLA-------SPASPPHYMFNPVKTIKTNTI 175
P F + + + +F + H A S A P Y N N
Sbjct: 57 --PAFHETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRN-------NLD 107
Query: 176 GTINMLGLAKRVGAK-ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAET 234
+++L + + K I+F+S++ VYG PE P ET+ P+ Y + K +AE
Sbjct: 108 SLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQ 162
Query: 235 LCYAYAR-HEDLSVRVARIFN 254
+ V R FN
Sbjct: 163 ILRDVEAADPSWRVATLRYFN 183
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 79.9 bits (198), Expect = 6e-17
Identities = 67/272 (24%), Positives = 102/272 (37%), Gaps = 71/272 (26%)
Query: 76 FQDYQSKRRILITGGAGFVGSHLVDKLMLM---GHEVTVVDNF-FTGRKENVEHWFGHPN 131
+ IL+TGGAGF+GS+ V ML +++ D ++G NV+ HPN
Sbjct: 18 LYFQSNAMNILVTGGAGFIGSNFV-HYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPN 76
Query: 132 FEIIHQDI-----VTPLFVE--VDEIYHLA-------SPASPPHYMFNPVKTIKTNTIGT 177
+ + +I + + E V I + A S +P + TN IGT
Sbjct: 77 YYFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPF-------YDTNVIGT 129
Query: 178 INMLGLAKRVGAKILF--ASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETL 235
+ +L L K+ ST EVYG + P+ P + Y +K A+ +
Sbjct: 130 VTLLELVKKYPHI-KLVQVSTDEVYGSLG----KTGRFTEETPLAPNSPYSSSKASADMI 184
Query: 236 CYAYARHEDLSVRVARIFNTYGPRMH-------MNDGRVVSNFIIQALRNETITSDSSKS 288
AY + L V V R N YGP + M + AL +
Sbjct: 185 ALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLM---------VTNALEGKK-------- 227
Query: 289 FTKFWDTLYIPHSFTQVYGLGNQTRSFQYVTD 320
+P +YG G R + +VTD
Sbjct: 228 ---------LP-----LYGDGLNVRDWLHVTD 245
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 79.9 bits (198), Expect = 6e-17
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 37/198 (18%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRK---------ENVEHWFGH-PN 131
++L+TGGAG++GSH V +L+ G+ V+DNF + V+ G
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61
Query: 132 FE---IIHQDIVTPLFVE--VDEIYHLA-------SPASPPHYMFNPVKTIKTNTIGTIN 179
FE I+ Q + LF + + H A S P Y N GTI
Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-------NLTGTIQ 114
Query: 180 MLGLAKRVGAK-ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRAC-YDEAKRVAETLCY 237
+L + K G K ++F+S++ VYG+P+ P E + P G Y ++K E +
Sbjct: 115 LLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH-----PTGGCTNPYGKSKFFIEEMIR 169
Query: 238 AYAR-HEDLSVRVARIFN 254
+ + + + R FN
Sbjct: 170 DLCQADKTWNAVLLRYFN 187
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 79.4 bits (197), Expect = 7e-17
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 49/199 (24%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNF-------------FTGRKENVEHWFGHP 130
R+L+TGG+G++GSH +L+ GH+V ++DN G+ P
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKH---------P 52
Query: 131 NFE---IIHQDIVTPLFVE--VDEIYHLA-------SPASPPHYMFNPVKTIKTNTIGTI 178
F I ++ ++T + + +D + H A S P Y N N GT+
Sbjct: 53 TFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTL 105
Query: 179 NMLGLAKRVGAK-ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRAC-YDEAKRVAETLC 236
++ + K +F+S++ VYGD P E++ P G Y ++K + E +
Sbjct: 106 RLISAMRAANVKNFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQIL 160
Query: 237 YAYAR-HEDLSVRVARIFN 254
+ D S+ + R FN
Sbjct: 161 TDLQKAQPDWSIALLRYFN 179
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 80.9 bits (200), Expect = 7e-17
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 35/205 (17%)
Query: 73 SVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE---NVEHWFG- 128
+ + Q + + +L+TGGAG++GSH V +L+ G++ V DN + +E
Sbjct: 2 TAQLQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKH 61
Query: 129 HPNFE---IIHQDIVTPLFVE--VDEIYHLA-------SPASPPHYMFNPVKTIKTNTIG 176
H F + + + +F E +D + H A S P Y N N +G
Sbjct: 62 HIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHN-------NILG 114
Query: 177 TINMLGLAKRVGAK-ILFASTSEVYGDPEVHPQ----PETYWGHVNPIGPRACYDEAKRV 231
T+ +L L ++ +F+S++ VYGD P PE P+GP Y K
Sbjct: 115 TVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC-----PLGPTNPYGHTKYA 169
Query: 232 AETLC--YAYARHEDLSVRVARIFN 254
E + + + + R FN
Sbjct: 170 IENILNDLYNSDKKSWKFAILRYFN 194
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 79.4 bits (195), Expect = 1e-16
Identities = 33/210 (15%), Positives = 57/210 (27%), Gaps = 17/210 (8%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI--- 139
LI G G +G+ L + L L + R+ W + DI
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPA-WHEDNPINYVQCDISDP 60
Query: 140 --VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK---ILFA 194
+ ++ H+ + + N+ N+L I
Sbjct: 61 DDSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQ 118
Query: 195 STSEVYGDPEVHPQPETYWGHVNPIG---PRACYDEAKRVAET-LCYAYARHEDLSVRVA 250
+ + Y P H P PR Y E + + E L+ V
Sbjct: 119 TGRKHYMGP--FESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKEGLTWSVH 176
Query: 251 RIFNTYGPRMHMNDGRVVSNFIIQALRNET 280
R N +G + V + + A+
Sbjct: 177 RPGNIFGFSPYSMMNLVGTLCVYAAICKHE 206
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 77.7 bits (192), Expect = 4e-16
Identities = 43/216 (19%), Positives = 72/216 (33%), Gaps = 54/216 (25%)
Query: 81 SKRRILITGGAGFVGSHLVDKLML-MGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI 139
S R+L+ GGAG++GSH V L+ H V +VD+ ++ + Q
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 140 VTPL--------FVEVD--------EIY----------HLA-------SPASPPHYMFNP 166
D ++ H+ S P Y N
Sbjct: 61 GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDN- 119
Query: 167 VKTIKTNTIGTINMLGLAKRVGAK-ILFASTSEVYGDPEVH-------PQPETYWGHVNP 218
N +G + +L I+F+S++ ++G+P + P +P
Sbjct: 120 ------NVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINA--KKSP 171
Query: 219 IGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFN 254
P Y E+K +AE + A + R FN
Sbjct: 172 ESP---YGESKLIAERMIRDCAEAYGIKGICLRYFN 204
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 75.1 bits (185), Expect = 6e-16
Identities = 27/200 (13%), Positives = 64/200 (32%), Gaps = 24/200 (12%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI 139
+ ++I++ G +GFVGS L+++ + G EVT V E ++ + + ++ D+
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAV----VRHPEKIK--IENEHLKVKKADV 55
Query: 140 -----VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-ILF 193
V + D + +P + + ++ K+ G L
Sbjct: 56 SSLDEVCEVCKGADAVISAFNPGWNNPDI------YDETIKVYLTIIDGVKKAGVNRFLM 109
Query: 194 ASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIF 253
+ ++ P K + E + +++
Sbjct: 110 VGGAGSLFIAPGLRLMDS------GEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPA 163
Query: 254 NTYGPRMHMNDGRVVSNFII 273
P + R+ + +I
Sbjct: 164 ADMRPGVRTGRYRLGKDDMI 183
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 76.0 bits (187), Expect = 1e-15
Identities = 52/285 (18%), Positives = 96/285 (33%), Gaps = 60/285 (21%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVV-------DNFFT--GRKENVEHWFGHPNFE 133
+R+ +TG GF G L L MG V + F + ++ G +
Sbjct: 10 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIG----D 65
Query: 134 IIHQDIVTPLFVEV--DEIYHLASPASP---PHYMFNPVKTIKTNTIGTINMLGLAKRVG 188
I Q+ + E + ++H+A A P Y PV+T TN +GT+ +L + VG
Sbjct: 66 IRDQNKLLESIREFQPEIVFHMA--AQPLVRLSYS-EPVETYSTNVMGTVYLLEAIRHVG 122
Query: 189 AK--ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARH---- 242
++ ++ + Y + E +G Y +K AE + +Y
Sbjct: 123 GVKAVVNITSDKCYDNKEWIWGYREN----EAMGGYDPYSNSKGCAELVTSSYRNSFFNP 178
Query: 243 -----EDLSVRVARIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLY 297
+V R N G R+V + + +++ + +
Sbjct: 179 ANYGQHGTAVATVRAGNVIGGG-DWALDRIVPDILRAFEQSQPVIIRN------------ 225
Query: 298 IPHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNP 342
+ R +Q+V + + G + L YT
Sbjct: 226 -----------PHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEG 259
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2
PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 73.3 bits (181), Expect = 1e-14
Identities = 66/279 (23%), Positives = 104/279 (37%), Gaps = 84/279 (30%)
Query: 84 RILITGGAGFVGSHLVDKLMLM--GHEVTVVDNF-FTGRKENVEHWFGHPNFEIIHQDI- 139
+ILITGGAGF+GS +V + ++ V +D + G E++ + H DI
Sbjct: 2 KILITGGAGFIGSAVV-RHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 140 ----VTPLFVE--VDEIYHLA----------SPASPPHYMFNPVKTIKTNTIGTINMLGL 183
+T +F + D + HLA PA+ F I+TN +GT +L +
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAA-----F-----IETNIVGTYALLEV 110
Query: 184 AKRVGAKILFA----------STSEVYGD-----PEVHPQPETYWGHVNPIGPRACYDEA 228
A++ + + ST EVYGD + + P + Y +
Sbjct: 111 ARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSAS 170
Query: 229 KRVAETLCYAYARHEDLSVRVARIFNTYGPRMH-------MNDGRVVSNFIIQALRNETI 281
K ++ L A+ R L V N YGP + I+ AL +
Sbjct: 171 KASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLV---------ILNALEGKP- 220
Query: 282 TSDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYVTD 320
+P +YG G+Q R + YV D
Sbjct: 221 ----------------LP-----IYGKGDQIRDWLYVED 238
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 70.3 bits (172), Expect = 1e-13
Identities = 41/211 (19%), Positives = 64/211 (30%), Gaps = 45/211 (21%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVV-----------------DNFFTGRKENV 123
R +L+TG GF+G +LV +L+ + F +G E +
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELL 131
Query: 124 EHW--------------FGHPNFEIIHQDIVTPLFVEVDEIYHLASPASPPHYMFNP-VK 168
H+ P+ + Q + L VD I A+ + P +
Sbjct: 132 RHFKELAADRLEVVAGDKSEPDLGL-DQPMWRRLAETVDLIVDSAAMVN-----AFPYHE 185
Query: 169 TIKTNTIGTINMLGLAKRVGAK-ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRAC--- 224
N GT ++ +A K + ST++V E E V
Sbjct: 186 LFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGW 245
Query: 225 ---YDEAKRVAETLCYAYARHEDLSVRVARI 252
Y +K E L L V V R
Sbjct: 246 AGGYGTSKWAGEVLLREANDLCALPVAVFRC 276
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase,
rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas
aeruginosa} SCOP: c.2.1.2
Length = 335
Score = 68.7 bits (169), Expect = 3e-13
Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 37/183 (20%)
Query: 75 KFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVV----DNFFTGRKENVEHWFGHP 130
R L+TG G G++L L+ G+ V + + R +
Sbjct: 7 HHHHGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWR---LRELGIEG 63
Query: 131 NFEIIHQDI-----VTPLFVEV--DEIYHLAS----PASPPHYMF-NPVKTIKTNTIGTI 178
+ + D+ V ++ E+Y+LA+ AS + PV T + +G
Sbjct: 64 DIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGAS-----WNQPVTTGVVDGLGVT 118
Query: 179 NMLGLAKRVGAKILF--ASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLC 236
++L ++ + F ASTSE++G + Q E P PR+ Y AK
Sbjct: 119 HLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAK------L 167
Query: 237 YAY 239
Y +
Sbjct: 168 YGH 170
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 63.1 bits (153), Expect = 9e-12
Identities = 23/190 (12%), Positives = 56/190 (29%), Gaps = 15/190 (7%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
+I I G G GS ++++ GHEVT + H + I+ +DI
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTA----IVRNAGKITQ--THKDINILQKDIFDLT 55
Query: 144 FVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAKILFASTSEVYGDP 203
++ + + + + +++ + + L
Sbjct: 56 LSDLSDQNVVVDAYGISP------DEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQI 109
Query: 204 EVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPRMHMN 263
+ + Y A+ A+ L + + + S + P
Sbjct: 110 DEDGNT---LLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPGERTG 166
Query: 264 DGRVVSNFII 273
D ++ + ++
Sbjct: 167 DYQIGKDHLL 176
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 64.2 bits (157), Expect = 1e-11
Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 40/195 (20%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEV--TVVDNFFTGRKENVEHWFGHPNF---EII 135
K+ + GG GFV S LV L+ G+ V TV D ++ V H +I
Sbjct: 8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRD---PDNQKKVSHLLELQELGDLKIF 64
Query: 136 HQDIVTP-LFVE----VDEIYHLASPASPPHYMFNPVKTIKTNTI-----GTINMLGLA- 184
D+ F D ++H+A+P + + + + I G +N++
Sbjct: 65 RADLTDELSFEAPIAGCDFVFHVATP------VHFASEDPENDMIKPAIQGVVNVMKACT 118
Query: 185 -----KRVGAKILFASTSEVYGDPEVHPQP---ETYWGHVNPIG----PRACYDEAKRVA 232
KRV IL +S + V + E W + + P Y +K +A
Sbjct: 119 RAKSVKRV---ILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLA 175
Query: 233 ETLCYAYARHEDLSV 247
E + +A ++ +
Sbjct: 176 EKAAWKFAEENNIDL 190
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase,
lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A
{Aquifex aeolicus} PDB: 2z95_A*
Length = 345
Score = 63.4 bits (155), Expect = 2e-11
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 29/173 (16%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVD----NFFTGRKENVEHWFGHPNFEIIH 136
S +R LITG G G++L L+ G+EV D F + R ++ + +IIH
Sbjct: 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWR---LKELGIENDVKIIH 58
Query: 137 QDI-----VTPLFVEV--DEIYHLASPASPPHYMF-NPVKTIKTNTIGTINMLGLAKRVG 188
D+ + +V DE+Y+LA+ S F P+ T + + IG + +L + V
Sbjct: 59 MDLLEFSNIIRTIEKVQPDEVYNLAA-QSFVGVSFEQPILTAEVDAIGVLRILEALRTVK 117
Query: 189 AKILF--ASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAY 239
F ASTSE++G + PQ E P PR+ Y AK + +
Sbjct: 118 PDTKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVAK------LFGH 159
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 62.7 bits (153), Expect = 4e-11
Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 38/183 (20%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEV--TVVDNFFTGRKENVEHWFGHP---NFE-I 134
+L+TG GFV SH+V++L+ G++V T + N++ + FE
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS---ASKLANLQKRWDAKYPGRFETA 66
Query: 135 IHQDIVTP-LFVE----VDEIYHLASPAS---PPHYMFNPVKTIKTNTIGTINMLGLA-- 184
+ +D++ + E + H+AS S + P I GT+N L A
Sbjct: 67 VVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTP--AIG----GTLNALRAAAA 120
Query: 185 ----KRVGAKILFASTSEVYGDPEVHPQP---ETYWGHVNPIGPRACYDEAKRVAETLCY 237
KR +L +ST E W N + + +
Sbjct: 121 TPSVKRF---VLTSSTVSALIPKPNVEGIYLDEKSW---NLESIDKAKTLPESDPQKSLW 174
Query: 238 AYA 240
YA
Sbjct: 175 VYA 177
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 60.3 bits (147), Expect = 2e-10
Identities = 43/189 (22%), Positives = 70/189 (37%), Gaps = 30/189 (15%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEV--TVVDNFFTGRKENVEHWFGHP----NFEII 135
K R+ +TGG GF+GS ++ L+ G+ V T+ + RK +V P
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRAD--PERKRDVSFLTNLPGASEKLHFF 58
Query: 136 HQDIVTP-LFVE----VDEIYHLASPASPPHYMFNPVK-TIKTNTIGTINML------GL 183
+ D+ P F I+H ASP + P + K G + +L
Sbjct: 59 NADLSNPDSFAAAIEGCVGIFHTASPI--DFAVSEPEEIVTKRTVDGALGILKACVNSKT 116
Query: 184 AKRVGAKILFASTSEVYGD-PEVHPQPETYWGHVNPIG----PRACYDEAKRVAETLCYA 238
KR I +S S V + + E+ W V+ + Y +K +AE
Sbjct: 117 VKRF---IYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLE 173
Query: 239 YARHEDLSV 247
+ + V
Sbjct: 174 FGEQNGIDV 182
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 60.3 bits (147), Expect = 2e-10
Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 31/190 (16%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEV--TVVDNFFTGRKENVEHWFGHP----NFEI 134
+ +TG +GF+GS LV +L+ G+ V TV D + V+H P + +
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRD---PTNVKKVKHLLDLPKAETHLTL 60
Query: 135 IHQDIVTP-LFVE----VDEIYHLASPASPPHYMFNPVK-TIKTNTIGTINML------G 182
D+ F E ++H+A+P +P IK G + ++
Sbjct: 61 WKADLADEGSFDEAIKGCTGVFHVATPM--DFESKDPENEVIKPTIEGMLGIMKSCAAAK 118
Query: 183 LAKRVGAKILFASTSEVYGDPE-VHPQPETYWGHVNPIG----PRACYDEAKRVAETLCY 237
+R+ + +S V + E+ W + Y +K +AE +
Sbjct: 119 TVRRL---VFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAW 175
Query: 238 AYARHEDLSV 247
YA+ ++
Sbjct: 176 KYAKENNIDF 185
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 58.9 bits (143), Expect = 3e-10
Identities = 31/214 (14%), Positives = 68/214 (31%), Gaps = 45/214 (21%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI---- 139
+I I G G VG L+ L +++ RK E + N + +H D+
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAG-----ARKV--EQVPQYNNVKAVHFDVDWTP 54
Query: 140 --VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-ILFAST 196
+ +D I +++ +K + G + ++ A++ K + ST
Sbjct: 55 EEMAKQLHGMDAIINVSG--------SGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106
Query: 197 SEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLS---VRVARIF 253
PE + + Y AK A+ + +L ++ +
Sbjct: 107 IFS-LQPEKWIGAGF-----DALKD---YYIAKHFADL---YLTKETNLDYTIIQPGALT 154
Query: 254 N---TYGPRMHMNDGRVVS-----NFIIQALRNE 279
T ++ + + I + + +
Sbjct: 155 EEEATGLIDINDEVSASNTIGDVADTIKELVMTD 188
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 58.2 bits (141), Expect = 8e-10
Identities = 43/208 (20%), Positives = 62/208 (29%), Gaps = 40/208 (19%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGR-KENVEHWFGHPNFEIIHQDI 139
S +ILI G G +G L +L GHEVT R + + ++ D
Sbjct: 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTG-----LRRSAQPMPAGVQTLIADVTRPDT 55
Query: 140 VTPLFVEVDEIYHLASPAS---PPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-ILFAS 195
+ + EI AS HY + G N L + + + F S
Sbjct: 56 LASIVHLRPEILVYCVAASEYSDEHYR-------LSYVEGLRNTLSALEGAPLQHVFFVS 108
Query: 196 TSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNT 255
++ VYG E + AE L S + R
Sbjct: 109 STGVYGQEVEEWLDEDTP--PIAKDFSG---KRMLEAEALL------AAYSSTILRFSGI 157
Query: 256 YGP-RMHM----------NDGRVVSNFI 272
YGP R+ M +N I
Sbjct: 158 YGPGRLRMIRQAQTPEQWPARNAWTNRI 185
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium,
rossman-fold, short-chain dehydrogenase/reductase, SDR,
structural genomics,lyase; HET: NDP GDP; 1.84A {Homo
sapiens} SCOP: c.2.1.2
Length = 375
Score = 58.4 bits (142), Expect = 9e-10
Identities = 56/189 (29%), Positives = 81/189 (42%), Gaps = 35/189 (18%)
Query: 72 PSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVD----NFFTGRKENV---E 124
K+ + LITG G GS+L + L+ G+EV + +F TGR E++
Sbjct: 14 RENKYFQGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNP 73
Query: 125 HWFGHPNFEIIHQDI-----VTPLFVEV--DEIYHLASPASPPHYMF-NPVKTIKTNTIG 176
N ++ + D+ + + EV EIY+L + S F T + +G
Sbjct: 74 QAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGA-QSHVKISFDLAEYTADVDGVG 132
Query: 177 TINML------GLAKRVGAKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKR 230
T+ +L GL V K ASTSE+YG + PQ ET P PR+ Y AK
Sbjct: 133 TLRLLDAVKTCGLINSV--KFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAK- 184
Query: 231 VAETLCYAY 239
YAY
Sbjct: 185 -----LYAY 188
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 55.8 bits (135), Expect = 2e-09
Identities = 34/202 (16%), Positives = 58/202 (28%), Gaps = 43/202 (21%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI---- 139
+I I G G G + + + G+EVTV+ R + G ++ D+
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVL-----VRDSSRLPSEGPRPAHVVVGDVLQAA 59
Query: 140 -VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-ILFASTS 197
V D + L N + + G N++ K G ++ +++
Sbjct: 60 DVDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112
Query: 198 EVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLS---VRVARIFN 254
+ DP P + + R L V I +
Sbjct: 113 FLLWDPTKVP---------PRLQA---VTDDHIRMH----KVLRESGLKYVAVMPPHIGD 156
Query: 255 TYGPRMH----MNDGRVVSNFI 272
P DGR S I
Sbjct: 157 --QPLTGAYTVTLDGRGPSRVI 176
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 57.4 bits (139), Expect = 3e-09
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI 139
S + ITG G VG L +L GHEV + ++ F P +
Sbjct: 145 GSPLTVAITGSRGLVGRALTAQLQTGGHEVIQL----VRKEPKPGKRFWDP------LNP 194
Query: 140 VTPLFVEVDEIYHLA 154
+ L D + HLA
Sbjct: 195 ASDLLDGADVLVHLA 209
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 55.4 bits (134), Expect = 4e-09
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 25/154 (16%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI---V 140
R+L+ G G V +L+ +L GHE +E +I+ ++
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEPVA----MVRNEEQGPELRERGASDIVVANLEEDF 78
Query: 141 TPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-ILFASTSEV 199
+ F +D + A + P KTI + G I + A++ G K + S+
Sbjct: 79 SHAFASIDAVVFAAG-SGPH---TGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT 134
Query: 200 YGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAE 233
DP+ P + Y AKR+A+
Sbjct: 135 -VDPDQGP---------MNMRH---YLVAKRLAD 155
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 54.3 bits (130), Expect = 1e-08
Identities = 18/181 (9%), Positives = 43/181 (23%), Gaps = 24/181 (13%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIH-----QD 138
+I + G G GS +V + GHEV V R + + +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAV-----VR--DPQKAADRLGATVATLVKEPLV 54
Query: 139 IVTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK-ILFASTS 197
+ VD + S + + +++ L + + ++
Sbjct: 55 LTEADLDSVDAVVDALSVPWGSGRGY-------LHLDFATHLVSLLRNSDTLAVFILGSA 107
Query: 198 EVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYG 257
+ HP + + +++ +
Sbjct: 108 SLAMPGADHPMILDFPESAASQPWYD----GALYQYYEYQFLQMNANVNWIGISPSEAFP 163
Query: 258 P 258
Sbjct: 164 S 164
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain
dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Length = 381
Score = 55.0 bits (133), Expect = 1e-08
Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 34/193 (17%)
Query: 68 PKKYPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVD----NFFTGRKENV 123
P + ++ LITG G GS+L + L+ G+EV + NF T R ++
Sbjct: 14 SITAPKADSTVVEPRKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHI 73
Query: 124 ---EHWFGHPNFEIIHQDI-----VTPLFVEV--DEIYHLASPASPPHYMF-NPVKTIKT 172
H ++ + D+ + + DE+Y+LA+ S F P T
Sbjct: 74 YIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLAA-QSHVAVSFEIPDYTADV 132
Query: 173 NTIGTINML------GLAKRVGAKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYD 226
G + +L + K A +SE++G PQ ET P PR+ Y
Sbjct: 133 VATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSET-----TPFHPRSPYA 186
Query: 227 EAKRVAETLCYAY 239
+K C A+
Sbjct: 187 ASK------CAAH 193
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A
{Escherichia coli} SCOP: c.2.1.2
Length = 372
Score = 53.4 bits (129), Expect = 4e-08
Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 40/177 (22%)
Query: 86 LITGGAGFVGSHLVDKLMLMGHEVTVVD----NFFTGRKENVEH-----WFGHPNFEIIH 136
LITG G GS+L + L+ G+EV + +F T R V+H +P F + +
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTER---VDHIYQDPHTCNPKFHLHY 61
Query: 137 QDI-----VTPLFVEV--DEIYHLASPASPPHYMF-NPVKTIKTNTIGTINML------G 182
D+ +T + EV DE+Y+L + S F +P T + +GT+ +L G
Sbjct: 62 GDLSDTSNLTRILREVQPDEVYNLGA-MSHVAVSFESPEYTADVDAMGTLRLLEAIRFLG 120
Query: 183 LAKRVGAKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAY 239
L K+ + ASTSE+YG + PQ ET P PR+ Y AK YAY
Sbjct: 121 LEKKT--RFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAK------LYAY 164
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 49.1 bits (117), Expect = 6e-07
Identities = 32/171 (18%), Positives = 51/171 (29%), Gaps = 32/171 (18%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI- 139
+ +L+TG +G G + KL + + E G ++ DI
Sbjct: 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG--LVRSAQGKEKIGG--EADVFIGDIT 58
Query: 140 ----VTPLFVEVDEIYHLAS-------------PASPPHYMFNPVKTIKTNTIGTINMLG 182
+ P F +D + L S P + + + IG N +
Sbjct: 59 DADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQID 118
Query: 183 LAKRVGAKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAE 233
AK G K + G HP + G+ KR AE
Sbjct: 119 AAKVAGVK-HIVVVGSMGGTNPDHPLNKLGNGN---------ILVWKRKAE 159
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 49.6 bits (119), Expect = 7e-07
Identities = 53/232 (22%), Positives = 79/232 (34%), Gaps = 46/232 (19%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKEN----VEHWFGHPNFEIIH 136
+ ILITGG G G V K+ L + + R E + F P
Sbjct: 20 DNQTILITGGTGSFGKCFVRKV-LDTTNAKKIIVY--SRDELKQSEMAMEFNDPRMRFFI 76
Query: 137 QDI-----VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVG-AK 190
D+ + VD H A+ P +NP++ IKTN +G N++ + ++
Sbjct: 77 GDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQ 136
Query: 191 ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYA---YARHEDLSV 247
++ ST D +P +N Y K ++ L + +
Sbjct: 137 VIALST-----DKAANP--------IN------LYGATKLCSDKLFVSANNFKGSSQTQF 177
Query: 248 RVARIFNTYGPRMHMNDGRVVSNFIIQALRNE---TITSDSSKSFTKFWDTL 296
V R N G R G VV F IT T+FW TL
Sbjct: 178 SVVRYGNVVGSR-----GSVVPFFKKLVQNKASEIPIT---DIRMTRFWITL 221
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 46.6 bits (110), Expect = 3e-06
Identities = 30/216 (13%), Positives = 56/216 (25%), Gaps = 48/216 (22%)
Query: 84 RILITGGAGFVGSHLVDKLMLM-GHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTP 142
I I G AG + L L+ +T+ + H +I P
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGR--QLKTRIPPEIIDHERVTVIEGSFQNP 64
Query: 143 LFVE-----VDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAKILFASTS 197
+E + ++ A + +++ R + + +
Sbjct: 65 GXLEQAVTNAEVVFVGAMESGS----------------DMASIVKALSRXNIRRVIGVSM 108
Query: 198 EVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLS---VRVARIFN 254
G P W N Y + +R A R +L+ +R+ ++N
Sbjct: 109 --AGLSGEFPVALEKWTFDNLPIS---YVQGERQAR----NVLRESNLNYTILRLTWLYN 159
Query: 255 -------TYGPRMHMNDGRVVS-----NFIIQALRN 278
P + VS I L
Sbjct: 160 DPEXTDYELIPEGAQFNDAQVSREAVVKAIFDILHA 195
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-05
Identities = 45/382 (11%), Positives = 110/382 (28%), Gaps = 127/382 (33%)
Query: 44 GDLNFANERI-KILEEKL-KSLDVRIPKKYPSVKFQDYQSKRRILITGGAGFVGSHLVDK 101
G+ + + I + E+ + D +D Q + +++ +D
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFD-----------CKDVQDMPKSILS-------KEEIDH 53
Query: 102 LMLMGHEVTVVDNFF----TGRKENVEHWFG---HPNFEIIHQDI---------VTPLFV 145
+++ V+ F + ++E V+ + N++ + I +T +++
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 146 E-VDEIYHLASPASPPH-YMFNPVKTIKT--------NTIGTINMLGLAKRVGAKILFAS 195
E D +Y+ + + P ++ + +LG K +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----V--- 166
Query: 196 TSEVYGDPEVHPQPE--TYWGHVNPIGPRACYDEAKRVAETLCY---------------A 238
+V +V + + +W +N + + + + L Y
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW--LN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 239 YARHEDLSVRVARIF--NTYGPRM-----HMNDGRVVSNFIIQA--L---RNETIT---- 282
R + + R+ Y ++ + + + F + L R + +T
Sbjct: 224 KLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 283 ---------SDSSKSFTKFWDTLYIPHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNY 333
S + T + + + Q
Sbjct: 283 AATTTHISLDHHSMTLTPD-EVKSL---LLKYLDCRPQ---------------------- 316
Query: 334 TLP--VNLGNPTEHSILACKLK 353
LP V NP SI+A ++
Sbjct: 317 DLPREVLTTNPRRLSIIAESIR 338
Score = 36.0 bits (82), Expect = 0.019
Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 45/237 (18%)
Query: 131 NFEIIH-QDIVTPLFV--EVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRV 187
NF+ QD+ + E+D I S +F + + + + + R+
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ--KFVEEVLRI 89
Query: 188 GAKILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHED--- 244
K L + P Y + + Y++ + A+ Y +R +
Sbjct: 90 NYKFLMSPIKTEQRQPS--MMTRMYIEQRDRL-----YNDNQVFAK---YNVSRLQPYLK 139
Query: 245 -----LSVRVARIFNTYGPRMHMN-DGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYI 298
L +R A+ G + G+ + + + F FW
Sbjct: 140 LRQALLELRPAKNVLIDG----VLGSGKTW--VALDVCLSYKV--QCKMDFKIFWLN--- 188
Query: 299 PHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTLPVNLGNPTEHSILACKLKYK 355
L N + L L+ ++ N+T + + + I + + + +
Sbjct: 189 ---------LKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 45.1 bits (107), Expect = 2e-05
Identities = 40/199 (20%), Positives = 68/199 (34%), Gaps = 56/199 (28%)
Query: 77 QDYQSKRRILITGGAGFVGSHLV--------DKLMLMGH-EVTVVDNFFTGRKENVEHWF 127
Q S+ R L+ GGAG +G + KL ++ E +N ++ + F
Sbjct: 30 QSVVSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDISE----NNMVELVRD-IRSSF 84
Query: 128 GHPNFEI--IHQDIVTPLFVE-------VDEIYHLASPASPPH-------YMFNPVKTIK 171
G+ N + DI + + D + +L++ F ++ I
Sbjct: 85 GYINGDFQTFALDIGSIEYDAFIKADGQYDYVLNLSA-----LKHVRSEKDPFTLMRMID 139
Query: 172 TNTIGTINMLGLAKRVGAKILFA-STSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKR 230
N T + + GAK F ST D +P VN +G +KR
Sbjct: 140 VNVFNTDKTIQQSIDAGAKKYFCVST-----DKAANP--------VNMMGA------SKR 180
Query: 231 VAETLCYAYARHEDLS-VR 248
+ E + +S R
Sbjct: 181 IMEMFLMRKSEEIAISTAR 199
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 42.5 bits (100), Expect = 9e-05
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 19/119 (15%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMG--HEVTVVDNFFTGRKENVEHWFGHPNFEIIHQD 138
+ + I G +G G L+ +++ G +VT++ GR++ + N D
Sbjct: 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLI-----GRRKLTFDEEAYKNVNQEVVD 71
Query: 139 I-----VTPLFVEVDEIYHL--ASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAK 190
F D + + F V + + LAK G K
Sbjct: 72 FEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRV-----DRDYVLKSAELAKAGGCK 125
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 42.1 bits (99), Expect = 1e-04
Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 35/175 (20%)
Query: 68 PKKYPSVKFQDYQSKR--RILITGGAGFVGSHLVDKLML-MGHEVTVVDNFFTGRKENVE 124
+ S + Y +LI G G + H++++L + T+ R+
Sbjct: 7 HHHHSSGRENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLF-----ARQPAKI 61
Query: 125 HWFGHPNFEIIHQDI-----VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTIN 179
H N +II D+ + D +Y + +
Sbjct: 62 HKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDLDI--------------QANS 107
Query: 180 MLGLAKRVGAK-ILFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAE 233
++ K K ++F + +Y + P W + + R A
Sbjct: 108 VIAAMKACDVKRLIFVLSLGIYDEV---PGKFVEWNNAVI----GEPLKPFRRAA 155
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 42.6 bits (100), Expect = 1e-04
Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 20/138 (14%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVV---DNFFTGRKENVEHWFGHPNFEIIHQ 137
K R+LI GG G++G +V+ + +GH V+ + K + +F ++I
Sbjct: 3 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 62
Query: 138 DI-----VTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAKIL 192
+ + +VD + + H++ +K ++ K G
Sbjct: 63 SLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVE-----------AIKEAGNIKR 111
Query: 193 FASTSEVYGDPEVHPQPE 210
F SE DP++
Sbjct: 112 FL-PSEFGMDPDIMEHAL 128
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 42.6 bits (100), Expect = 1e-04
Identities = 31/177 (17%), Positives = 50/177 (28%), Gaps = 24/177 (13%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVT 141
+L G G+ L L G + T R + E +
Sbjct: 5 TGTLLSFG-HGYTARVLSRALAPQGWRIIG-----TSRNPDQMEAIRASGAEPLLWPGEE 58
Query: 142 PLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAKILFASTSEVYG 201
P V HL +P + + + + + + ST+ VYG
Sbjct: 59 PSLDGVT---HLLISTAPDSGGDPVLAALG-------DQIAARAAQFRWVGYLSTTAVYG 108
Query: 202 DPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGP 258
D + ET + P R R + +L + V R+ YGP
Sbjct: 109 DHDGAWVDETT--PLTPTAARG------RWRVMAEQQWQAVPNLPLHVFRLAGIYGP 157
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP;
1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A*
1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Length = 321
Score = 42.2 bits (100), Expect = 2e-04
Identities = 59/307 (19%), Positives = 97/307 (31%), Gaps = 81/307 (26%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFT-GRKENVEHWFGHPNFEIIHQDI 139
+K+R+ I G G VGS + +L G R E ++
Sbjct: 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDV-----ELVLRTRDE----------LNLLDSRA 46
Query: 140 VTPLFVEVDEIYHLASPASPPHYMFN--------------PVKTIKTNTIGTINMLGLAK 185
V F ++ P I N + N++ A
Sbjct: 47 VHDFFASER-----------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAH 95
Query: 186 RVGA-KILFASTSEVYGDPEVHPQP--ETYW--GHVNPIGPRACYDEAKRVAETLCYAYA 240
+ K+LF +S +Y P++ QP E+ G + P Y AK LC +Y
Sbjct: 96 QNDVNKLLFLGSSCIY--PKLAKQPMAESELLQGTLEPT--NEPYAIAKIAGIKLCESYN 151
Query: 241 RHEDLSVRVARIFNTYGPRM--HMNDGRVVSNFIIQALRNETITSDSSKSFTKFWDTLYI 298
R R N YGP H ++ V+ + +F +
Sbjct: 152 RQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALL-----------------RRFHEATAQ 194
Query: 299 PHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTL----------PVNLGNPTEHSI- 347
V+G G R F +V D+ I +M + + +N+G + +I
Sbjct: 195 KAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIR 254
Query: 348 -LACKLK 353
LA +
Sbjct: 255 ELAQTIA 261
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 41.4 bits (97), Expect = 3e-04
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVV 112
S+ RIL+ G G++G H+ + +GH ++
Sbjct: 3 SRSRILLIGATGYIGRHVAKASLDLGHPTFLL 34
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB:
3l4b_A*
Length = 155
Score = 39.5 bits (93), Expect = 4e-04
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 76 FQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDN 114
Q + I+I G G +GS + + GH V VVD
Sbjct: 13 MSKKQKSKYIVIFG-CGRLGSLIANLASSSGHSVVVVDK 50
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 41.1 bits (95), Expect = 4e-04
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI 139
+ + +L+ G+GFV +D L G +VTV K+ G + I D+
Sbjct: 2 ATKSVLM-LGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA---GVQHSTPISLDV 56
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 40.0 bits (94), Expect = 4e-04
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGHEVTVV 112
+ +R+L+ G G G HL+D+++ V+
Sbjct: 3 STPKRVLLAGATGLTGEHLLDRILSEPTLAKVI 35
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 40.6 bits (95), Expect = 5e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVV 112
++ +ILI G G +G H+V + G+ +
Sbjct: 1 TENKILILGPTGAIGRHIVWASIKAGNPTYAL 32
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 38.2 bits (89), Expect = 6e-04
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMG-HEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI 139
+ I + G AG +G + L + VTV D+ + D
Sbjct: 5 RWNICVVG-AGKIGQMIAALLKTSSNYSVTVADH----DLAALAV-LNRMGVATKQVDA 57
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 39.9 bits (93), Expect = 8e-04
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGHEVTV 111
K +ILI GG G++G+H+V + +GH V
Sbjct: 9 GMKSKILIFGGTGYIGNHMVKGSLKLGHPTYV 40
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 40.0 bits (93), Expect = 8e-04
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVV 112
K R+LI G GF+G + + ++
Sbjct: 9 PKGRVLIAGATGFIGQFVATASLDAHRPTYIL 40
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD,
RCK domain, potassium transport, potassium channel,
KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii}
SCOP: c.2.1.9
Length = 140
Score = 37.5 bits (88), Expect = 0.001
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDN 114
I+I G G VG L L GH++ ++D
Sbjct: 6 YIIIAG-IGRVGYTLAKSLSEKGHDIVLIDI 35
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 38.7 bits (91), Expect = 0.002
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 73 SVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE 121
S K + +ILITG G +G + +L EV T ++
Sbjct: 3 SDKIHHHHHHMKILITGANGQLGREIQKQLKGKNVEV-----IPTDVQD 46
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 38.4 bits (89), Expect = 0.002
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVV 112
+I+I GG G++G +V + H +
Sbjct: 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIY 34
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.002
Identities = 40/196 (20%), Positives = 63/196 (32%), Gaps = 72/196 (36%)
Query: 42 LRGDLNFANERIKILEEKLKSLDVRIPKKYPSVKFQDYQSKRRILITGGAGF--VG---- 95
L G LN + K +S RIP F S+R++ F V
Sbjct: 386 LYG-LNLTLRKAKAPSGLDQS---RIP-------F----SERKL--KFSNRFLPVASPFH 428
Query: 96 SHL----VDKLM--LMGHEVTV--------VDNFFTGRKENVEHWFGHPNFEIIHQDIVT 141
SHL D + L+ + V+ V + F G + ++ I
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS-----------DLRVLSGSISE 477
Query: 142 PLFVEVDEIYHL------ASPASPPHYM-FNPVKTIKTNTIGTINMLG-LAKRV----GA 189
+ VD I L + H + F P G + LG L R G
Sbjct: 478 RI---VDCIIRLPVKWETTTQFKATHILDFGP---------GGASGLGVLTHRNKDGTGV 525
Query: 190 KILFASTSEVYGDPEV 205
+++ A T ++ D +
Sbjct: 526 RVIVAGTLDINPDDDY 541
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 38.3 bits (88), Expect = 0.003
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 82 KRRILITGGAGFVGSHLVDKL-MLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDI 139
+ +L+ G+GFV ++D L VTV N + + I D+
Sbjct: 23 GKNVLL-LGSGFVAQPVIDTLAANDDINVTVACR----TLANAQALAKPSGSKAISLDV 76
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 37.6 bits (88), Expect = 0.005
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDN 114
+I+I G AG VG L + L+ +++T+VD
Sbjct: 5 KIIILG-AGQVGGTLAENLVGENNDITIVDK 34
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 35.0 bits (81), Expect = 0.012
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHW 126
++ + G G G +V +L MGHEV VD +E V +
Sbjct: 6 NKQFAVIG-LGRFGGSIVKELHRMGHEVLAVDI----NEEKVNAY 45
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 35.9 bits (84), Expect = 0.013
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKE 121
K R++ITG G +G L ++L +++ + +K
Sbjct: 5 KERVIITGANGQLGKQLQEELNPEEYDI-----YPFDKKL 39
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 35.2 bits (82), Expect = 0.021
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 29/124 (23%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPL 143
R LITG +G +G L L + V ++ G ++ +
Sbjct: 2 RTLITGASGQLGIELSRLLSERHEVIKVYNS---------SEIQGGYKLDLTDFPRLEDF 52
Query: 144 FVEV--DEIYHLA---------SPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAKIL 192
++ D I + A K K N +++ K + + I+
Sbjct: 53 IIKKRPDVIINAAAMTDVDKCEI---------EKEKAYKINAEAVRHIVRAGKVIDSYIV 103
Query: 193 FAST 196
ST
Sbjct: 104 HIST 107
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 34.9 bits (81), Expect = 0.028
Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 26/125 (20%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEV--TVVDNFFTGRKENVEHWFGHPNFEIIHQDI 139
RR+L+TG G +G + + ++ ++ +
Sbjct: 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQ----------VNLLDSNA 51
Query: 140 VTPLFVEV--DEIYHLASPASPPHYMF------NPVKTIKTNTIGTINMLGLAKRVGAKI 191
V + + I H A A P + N + N+ A VGA +
Sbjct: 52 VHHIIHDFQPHVIVHCA--A----ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFL 105
Query: 192 LFAST 196
++ S+
Sbjct: 106 IYISS 110
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 33.0 bits (76), Expect = 0.050
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHW 126
+ ++ G G LV +L G +V VD KE +E
Sbjct: 6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDK----SKEKIELL 45
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 33.8 bits (77), Expect = 0.077
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
++LI G AG +G + L +V + D
Sbjct: 14 GRHMKVLILG-AGNIGRAIAWDL-KDEFDVYIGD 45
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin
A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB:
2iv3_A*
Length = 342
Score = 33.6 bits (77), Expect = 0.093
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 19/93 (20%)
Query: 89 GGAGFVGSHLVDKLMLMGHEVTVV--------DNFFT----GRKENVEHWFGHPNFEIIH 136
GG +V ++L+D L+ +GHEV ++ T G E +E W + +++H
Sbjct: 30 GGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRTADVDVVH 89
Query: 137 --QDIVTPLFVEVDEI-----YHLASPASPPHY 162
V +H + P
Sbjct: 90 DHSGGVIGPAGLPPGTAFISSHHFTTRPVNPVG 122
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 32.9 bits (74), Expect = 0.12
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTV 111
R+ + GG G +G L +L +GHE+ V
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVV 29
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 32.6 bits (75), Expect = 0.15
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVV 112
I++TG G +G+H+ ++ + + +
Sbjct: 2 NIMLTGATGHLGTHITNQAIANHIDHFHI 30
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 32.6 bits (75), Expect = 0.15
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQD 138
+++I GG +L ++ + V +++ +E E + IIH D
Sbjct: 2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINK----DRELCEEFAKKLKATIIHGD 51
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 32.6 bits (75), Expect = 0.16
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 85 ILITGGAGFVGSHLVDKLMLMGHEVTVV 112
I +TG G +G ++ L+ ++
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQII 30
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 31.9 bits (73), Expect = 0.28
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 85 ILITGGAGFVGSHLVDKLM--LMGHEVTVV 112
I ITG G +G ++++ LM + ++ +
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAI 31
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium
smegmatis} PDB: 2we7_A
Length = 386
Score = 31.7 bits (72), Expect = 0.34
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 77 QDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
Y + R+L+ G A + + + +G+ VTV D
Sbjct: 199 SSYAPRPRMLVFG-AIDFAAAVAQQGAFLGYRVTVCD 234
>3on5_A BH1974 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
oxidoreductase; 2.80A {Bacillus halodurans}
Length = 362
Score = 31.7 bits (72), Expect = 0.34
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 77 QDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIH 136
Y K R++I G AG LV +G V D R E F EII
Sbjct: 194 HIYSPKERLIIFG-AGPDVPPLVTFASNVGFYTVVTD----WRPNQCEKHFFPDADEIIV 248
Query: 137 QD 138
Sbjct: 249 DF 250
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 31.8 bits (71), Expect = 0.35
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDN 114
K+RI I G AG G HL L +VTV +
Sbjct: 20 HMKKRIGIVG-AGTAGLHLGLFLRQHDVDVTVYTD 53
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 30.8 bits (70), Expect = 0.36
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQD 138
G + + + +L G VTV+ N + +E N ++I D
Sbjct: 10 GHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-GDNADVIPGD 57
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 30.9 bits (70), Expect = 0.54
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDN 114
++ + G G G + +G V V
Sbjct: 159 QVAVLG-LGRTGMTIARTFAALGANVKVGAR 188
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 30.9 bits (70), Expect = 0.63
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGHEVTVV 112
Q K+ I + G G G+ L+ +GH V
Sbjct: 3 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQ 35
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 30.4 bits (68), Expect = 0.66
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTV 111
+ + I G G G L K++ G+ V
Sbjct: 19 QGVVCI-FGTGDFGKSLGLKMLQCGYSVVF 47
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 30.4 bits (69), Expect = 0.73
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
+I+I GG G +G L G+ ++++D
Sbjct: 22 HKIVIVGGYGKLGGLFARYLRASGYPISILD 52
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain,
PSI-2, NYSGXRC, structur genomics, protein structure
initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 30.4 bits (69), Expect = 0.76
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVE 124
RI I G AG VG +L +L L G + V+ R ++
Sbjct: 5 RICIVG-AGAVGGYLGARLALAGEAINVL-----ARGATLQ 39
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 30.4 bits (69), Expect = 0.88
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 79 YQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQD 138
+++TG +G VGS V L +G++V V +GR+ + I+ +D
Sbjct: 144 RPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAV----SGRESTHGYLKSLGANRILSRD 199
Query: 139 IVTP 142
Sbjct: 200 EFAE 203
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 30.3 bits (69), Expect = 0.91
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEH 125
++ I G AG VG + L GHEV ++ R ++V+
Sbjct: 21 KVAIMG-AGAVGCYYGGMLARAGHEVILI-----ARPQHVQA 56
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 30.2 bits (69), Expect = 0.99
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPLFVEVDE 149
G G V L KL G ++ V D K V + + + + V D
Sbjct: 180 GLGNVAKALCKKLNTEGAKLVVTDV----NKAAVSAAVAEEGADAVAPNAI--YGVTCD- 232
Query: 150 IYHLASPA 157
I+ +P
Sbjct: 233 IF---APC 237
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.1
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 51 ER--IKILEEKLKSLDVRIPKKYPSVKFQ 77
E+ +K L+ LK + P++ +
Sbjct: 18 EKQALKKLQASLK---LYADDSAPALAIK 43
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 29.8 bits (66), Expect = 1.2
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 73 SVKFQDYQSKRRILITG------GAGFVGSHLVDKLMLMGHEVTVVD 113
S K + + G G G +G + + GHEVT
Sbjct: 3 SDKIHHHHHHENLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYG 49
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 30.1 bits (68), Expect = 1.3
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVE 124
R+LI G +G VG+ + + VT ++ E
Sbjct: 186 RVLILGASGGVGTFAIQVMKAWDAHVTA-----VCSQDASE 221
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 29.6 bits (67), Expect = 1.4
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVE 124
K +L+TG G VG V L G++V TG +E +
Sbjct: 151 KGSVLVTGATGGVGGIAVSMLNKRGYDVVAS----TGNREAAD 189
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 29.8 bits (68), Expect = 1.5
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
++ + + + G G +G +D L+ M V V +
Sbjct: 145 ENSQTVAVIGA-GPIGMEAIDFLVKMKKTVHVFE 177
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A
{Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Length = 499
Score = 29.7 bits (67), Expect = 1.5
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 88 TGGAGFVGSHLVDKLMLMGHEVTVV-----DNFFTGRKENVEHWFGHPNFEIIHQDIVTP 142
GG + L MG +V ++ D + ++++ I+
Sbjct: 32 FGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGD 91
Query: 143 LFVEVDEIY 151
F+ +E++
Sbjct: 92 KFLPKEELW 100
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 29.8 bits (68), Expect = 1.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTVVD 113
G+G++G + G +VTV+D
Sbjct: 156 GSGYIGIEAAEAFAKAGKKVTVID 179
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 29.5 bits (67), Expect = 1.6
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 80 QSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
KRR+L+ G G +G + L G+++ VV
Sbjct: 143 AGKRRVLLLGA-GLIGCEFANDLSSGGYQLDVVA 175
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 28.9 bits (64), Expect = 1.7
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 85 ILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPN 131
+LITG A S L L+ GH++ D ++ N
Sbjct: 19 VLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENNQLIGSCPSV 65
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 29.4 bits (67), Expect = 1.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTVVD 113
GAG+V +++ L G T++
Sbjct: 155 GAGYVSLEVLENLYERGLHPTLIH 178
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 29.5 bits (67), Expect = 1.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTVVD 113
GAG++G L + G EV ++D
Sbjct: 201 GAGYIGVELAEAFQRKGKEVVLID 224
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 29.4 bits (67), Expect = 1.9
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTVVD 113
G+G++G+ L + + V ++D
Sbjct: 156 GSGYIGAELAEAYSNQNYNVNLID 179
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 29.4 bits (65), Expect = 2.0
Identities = 12/101 (11%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 18 AQQYGDYNVRYDDNVLE---DSPLITRLRGDLNFANERIKILEEKLKSLDVRIPKKYPSV 74
+ + D+++ D+ + + D N + + + E L+ L+ R+
Sbjct: 211 SLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNT---- 266
Query: 75 KFQDYQSKRRILITGG-AGFVGSHLVDKLMLMGHEVTVVDN 114
++ +++ GG A + + + +N
Sbjct: 267 -LNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNN 306
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 29.2 bits (66), Expect = 2.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 82 KRRILIT-----GGAGFVGSHLVDKLMLMGHEVTVV 112
K +I IT GG+G VG+ L +L GHE+ +
Sbjct: 15 KLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFI 50
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 29.1 bits (66), Expect = 2.3
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTVVD 113
G GF+G +++ L +G + T+++
Sbjct: 158 GGGFIGLEMMESLHHLGIKTTLLE 181
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 28.8 bits (65), Expect = 2.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 74 VKFQDYQSKRRILITGGAGFVGSHLV 99
V + ILI GGAG VGS V
Sbjct: 164 VNKPVPGAAPAILIVGGAGGVGSIAV 189
>3bre_A Probable two-component response regulator; protein-nucleotide
complex, signaling protein; HET: C2E; 2.40A {Pseudomonas
aeruginosa} PDB: 3i5a_A*
Length = 358
Score = 28.9 bits (65), Expect = 2.5
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 24/86 (27%)
Query: 211 TYWGHVNPIGPRACYDEA-KRVAETLCYAYARHEDLSVRVARIFNTYG--------PRMH 261
T+ GH G DEA ++VA + +R DL AR YG P
Sbjct: 219 TF-GH--VAG-----DEALRQVAGAIREGCSRSSDL---AAR----YGGEEFAMVLPGTS 263
Query: 262 MNDGRVVSNFIIQALRNETITSDSSK 287
R+++ + + + + I+ D +
Sbjct: 264 PGGARLLAEKVRRTVESLQISHDQPR 289
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 29.0 bits (66), Expect = 2.5
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTVVD 113
G G +G + + + +G +V +++
Sbjct: 193 GGGAIGLEMAETFVELGKKVRMIE 216
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 29.1 bits (66), Expect = 2.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTVVD 113
G GF+G +V+ L G EVT+V+
Sbjct: 194 GGGFIGVEMVENLRERGIEVTLVE 217
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 28.4 bits (64), Expect = 2.6
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 31/138 (22%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIV 140
+ +IL+ G +G +GS + ++L EV GR G +I + D +
Sbjct: 2 NAMKILLIGASGTLGSAVKERL-EKKAEVIT-----AGRHS------GDVTVDITNIDSI 49
Query: 141 TPLFVEVDEIYHLASPA-----------SPPHYMFNPVKTIKTNTIGTINMLGLAKRV-- 187
++ +V ++ + S +P TI + G IN++ L
Sbjct: 50 KKMYEQVGKVDAIVSATGSATFSPLTELTPEKNA----VTISSKLGGQINLVLLGIDSLN 105
Query: 188 --GAKILFASTSEVYGDP 203
G+ L
Sbjct: 106 DKGSFTLTTGIMMEDPIV 123
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ,
hydrolase/transferase complex; 1.50A {Pseudomonas
aeruginosa} PDB: 2faq_A* 2far_A*
Length = 309
Score = 28.6 bits (64), Expect = 2.8
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 218 PIGPRACYDEAKRVAETLC-YAYARHEDLSV-------RVARIF 253
P+ R +DE K A+ + + + RV +IF
Sbjct: 183 PLERRHGWDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIF 226
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 29.0 bits (66), Expect = 2.9
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTVVD 113
G G++G + + G VT++
Sbjct: 155 GGGYIGIEMAEAFAAQGKNVTMIV 178
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 28.4 bits (63), Expect = 2.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTV 111
G+G L +L+ G +V V
Sbjct: 35 GSGDFARSLATRLVGSGFKVVV 56
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics,
riken structural genomics/proteomics in RSGI, TIM
barrel, unknown function; 1.85A {Thermus thermophilus}
PDB: 3ayt_A
Length = 254
Score = 28.6 bits (64), Expect = 3.1
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 205 VHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVARIFNTYGPRMHM 262
H G + P + A +AE L R L VR+ + N++ P
Sbjct: 95 FHS------GIPHGRTPEEALERALPLAEALGLVVRRARTLGVRLL-LENSHEPHPEA 145
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 28.5 bits (64), Expect = 3.1
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 81 SKRRILITGGAGFVGSHLVDKL 102
K+ +++ GG G G + L
Sbjct: 4 DKKLVVVFGGTGAQGGSVARTL 25
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 28.7 bits (64), Expect = 3.3
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
++ ++ G G VG L G EV +
Sbjct: 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCG 150
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 28.5 bits (63), Expect = 3.4
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 81 SKRRILITGGAGFVGSHLVDKLMLMGHEVTVVDN 114
+ + I G G +G+ + K+ H + ++
Sbjct: 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEI 43
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like
family; putative rossmann-like dehydrogenase, structural
genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Length = 232
Score = 28.5 bits (63), Expect = 3.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTVV 112
G ++ +KL +GH VTV+
Sbjct: 13 DDGSSTVNMAEKLDSVGHYVTVL 35
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 28.4 bits (64), Expect = 3.7
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 77 QDYQSKRRILITGGAGFVGSHLV 99
++ + +LI GAG VGS
Sbjct: 146 RNENEGKTLLIINGAGGVGSIAT 168
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 71 YPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
P + S + + I G G VG + L G +V+V +
Sbjct: 15 VPRGSHMNLLSDKNVAII-GGGPVGLTMAKLLQQNGIDVSVYE 56
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 28.1 bits (63), Expect = 3.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
RR+L+ GG G +GS V V +D
Sbjct: 8 RRVLVYGGRGALGSRCVQAFRARNWWVASID 38
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 28.4 bits (64), Expect = 3.9
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEH 125
+ +L+TG G VGS V L G+ V TG+ ++
Sbjct: 150 RGPVLVTGATGGVGSLAVSMLAKRGYTVEAS----TGKAAEHDY 189
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 28.5 bits (62), Expect = 4.0
Identities = 23/194 (11%), Positives = 43/194 (22%), Gaps = 14/194 (7%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTVVD--NFFTGR---KENVEHWF--GHPNFEI 134
I I G G G L GH+V + D GR K + G F
Sbjct: 2 TVPIAIIG-TGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTA 60
Query: 135 IH---QDIVTPLFVEVDEIYHLASPASPPHYMFNPVKTIKTNTIGTINMLGLAKRVGAKI 191
V + + +P + +G M + + + +
Sbjct: 61 RDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPSPDEQVRWVGKPGMSAITRAMRGDM 120
Query: 192 LFASTSEVYGDPEVHPQPETYWGHVNPIGPRACYDEAKRVAETLCYAYARHEDLSVRVAR 251
+ + + EV E + + + +
Sbjct: 121 PVSFSCRI---TEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAAAPKLASVV 177
Query: 252 IFNTYGPRMHMNDG 265
P +
Sbjct: 178 AGVKMDPTWAVALA 191
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 28.3 bits (64), Expect = 4.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTV 111
IL+ G G VG L L +G+ + +
Sbjct: 2 NILLFGKTGQVGWELQRSLAPVGNLIAL 29
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 28.0 bits (63), Expect = 4.1
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
+ IL+ GG+G +G+ +V +D
Sbjct: 23 KNILVLGGSGALGAEVVKFFKSKSWNTISID 53
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 28.4 bits (64), Expect = 4.2
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 87 ITGGAG-FVGSHLVDKLMLMGHEVTVVDNFFTGRKENVEHWFGHPNFEIIHQDIVTPLFV 145
+GG ++ +L G EV + + + N +I+ +
Sbjct: 40 DSGGMNVYI-LSTATELAKQGIEVDIYTRATRPSQGEIVRV--AENLRVINIAAGPYEGL 96
Query: 146 EVDEIY 151
+E+
Sbjct: 97 SKEELP 102
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 28.1 bits (62), Expect = 4.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTV 111
G G VG + L +GHEVT+
Sbjct: 26 GTGTVGRTMAGALADLGHEVTI 47
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase,
primase, NHEJ, transferase; 1.65A {Mycobacterium
tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Length = 303
Score = 28.2 bits (63), Expect = 4.2
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 8/44 (18%)
Query: 218 PIGPRACYDEAKRVAETLC-YAYARHEDLSV-------RVARIF 253
P+ A +A+ + L R ++F
Sbjct: 185 PLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVF 228
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 28.5 bits (64), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 82 KRRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
KR +++ F+ L +KL GHEVT+V
Sbjct: 529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVS 560
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 28.0 bits (62), Expect = 5.2
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVVDN 114
+ + G G VG + K +G +V V
Sbjct: 156 ANVAVLG-LGRVGMSVARKFAALGAKVKVGAR 186
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, protein
structure initiative; 2.30A {Staphylococcus aureus
subsp}
Length = 294
Score = 28.0 bits (63), Expect = 5.4
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
+ I G G VG+ + +L T++
Sbjct: 4 SVAIIG-PGAVGTTIAYELQQSLPHTTLIG 32
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 27.7 bits (62), Expect = 5.5
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 84 RILITGGAGFVGSHLVDKL---MLMGHEVTVVDN 114
R+ +TG AG + L+ ++ ++G + V+
Sbjct: 7 RVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQ 40
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 27.9 bits (63), Expect = 5.7
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 90 GAGFVGSHLVDKLMLMGHEVTVVD 113
G G VG L G ++ V D
Sbjct: 182 GLGAVGGSLASLAAEAGAQLLVAD 205
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 27.9 bits (63), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
R+LI GG G +G L G V++V+
Sbjct: 146 SRLLIVGG-GVIGLELAATARTAGVHVSLVE 175
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase,
lipopolysaccharide biosynthesis, family GT-4,
glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia
coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Length = 374
Score = 27.7 bits (62), Expect = 6.1
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 89 GGAGFVGSHLVDKLMLMGHEVTVV 112
GG + + GH V V
Sbjct: 14 GGLQRDFMRIASTVAARGHHVRVY 37
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
glycosyltransferase, rossmann fold, complex; HET: GDP;
2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Length = 406
Score = 27.6 bits (62), Expect = 6.3
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 84 RILI--------TGGAGFVGSHLVDKLMLMGHEVTVV 112
RI + GG L + L GHEV+V+
Sbjct: 22 RIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVL 58
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 27.5 bits (62), Expect = 6.5
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
+ ++ G G++G L G VT+++
Sbjct: 153 KNAVV-IGGGYIGLEAAAVLTKFGVNVTLLE 182
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 28.0 bits (62), Expect = 6.8
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 76 FQDYQSKRRILITGGAGFVGSHLVDKLMLMG-HEVTVVD 113
Q ++L+ GAG +G L+ L L G ++ V+D
Sbjct: 405 LQFLLDTCKVLV-IGAGGLGCELLKNLALSGFRQIHVID 442
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 27.6 bits (62), Expect = 7.0
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
RI I G AG +G + L G +V +
Sbjct: 4 RIAIVG-AGALGLYYGALLQRSGEDVHFLL 32
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure,
alpha-beta structure, structural genomics, protein
structure initiative; HET: MSE; 2.00A {Enterococcus
faecalis}
Length = 316
Score = 27.6 bits (62), Expect = 7.0
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
+I I G AG +GS L L G++VT++D
Sbjct: 5 KIAIAG-AGAMGSRLGIMLHQGGNDVTLID 33
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 27.6 bits (62), Expect = 7.1
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 71 YPSVKFQDYQSKRRILITGGAGFVGSHLVDKLMLMG--HEVTVVD 113
S + ++ +I + G G +G + G + ++D
Sbjct: 3 SKSWANHENKTVNKITVVG-GGELGIACTLAISAKGIADRLVLLD 46
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 27.6 bits (62), Expect = 7.3
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 78 DYQSKRRILITGGAGFVGSHLVDKLMLM--GHEVTVVD 113
Y ++ ++ I G AG +GS++ +M + + D
Sbjct: 4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYD 41
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 27.4 bits (60), Expect = 7.7
Identities = 11/112 (9%), Positives = 31/112 (27%), Gaps = 11/112 (9%)
Query: 63 LDVRIPKKYPSVKFQDYQSKRRILI----------TGGAGFVGSHLVDKLMLMGHEVTVV 112
++ IP+ P +R+ + GG L ++ + ++
Sbjct: 27 IETSIPEITPFNARTSSIKGKRLNLLVPSINQEHMFGGISTA-LKLFEQFDNKKFKKRII 85
Query: 113 DNFFTGRKENVEHWFGHPNFEIIHQDIVTPLFVEVDEIYHLASPASPPHYMF 164
T ++++ + V ++ Y+ P +
Sbjct: 86 LTDATPNPKDLQSFKSFKYVMPEEDKDFALQIVPFNDRYNRTIPVAKHDIFI 137
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 27.5 bits (61), Expect = 8.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 84 RILITGGAGFVGSHLVDKL 102
I ++G AG + +HL+ KL
Sbjct: 34 NIAVSGAAGMISNHLLFKL 52
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex,
multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1
PDB: 3puj_A 3c98_A
Length = 594
Score = 27.6 bits (60), Expect = 8.1
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 15/126 (11%)
Query: 248 RVARIFNTYGPRMHMNDGRVVSNFIIQALRNETITSDSSKSFTKFWD------------- 294
+ F + ++ AL NE + S ++K +
Sbjct: 86 SLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVY 145
Query: 295 TLYIPHSFTQVYGLGNQTRSFQYVTDLVDGLIALMNSNYTLPVN--LGNPTEHSILACKL 352
+L SF Y + L + + L + P G ++++LA +
Sbjct: 146 SLDSADSFQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLI 205
Query: 353 KYKCKH 358
+ K
Sbjct: 206 QDKLDA 211
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase,
NADP, pantothenate BIOS PSI-2, protein structure
initiative; 1.90A {Methylococcus capsulatus}
Length = 320
Score = 27.2 bits (61), Expect = 8.2
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 84 RILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
IL+ G G +GS L GH V+VV
Sbjct: 4 NILVIG-TGAIGSFYGALLAKTGHCVSVVS 32
>3tg7_A Hexon protein, late protein 2; adenovirus structural protein, with
NEW finding featuring PO binding to human coagulation
factor X; 1.57A {Human adenovirus 5} PDB: 2bvi_F 1p30_A
1vsz_A 3iyn_A 1p2z_A* 2obe_A
Length = 951
Score = 27.6 bits (61), Expect = 8.4
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 171 KTNTIGTINMLGLAK-RVGAKILFASTSEVYGDPEVHPQP---ETYW--GHVNPIGPRAC 224
KT+ G G+ + G +I + Y D P+P E+ W +N R
Sbjct: 164 KTHVFGQAPYSGINITKEGIQIGVEGQTPKYADKTFQPEPQIGESQWYETEINHAAGRVL 223
Query: 225 YDEAKRVAETLCY-AYAR 241
CY +YA+
Sbjct: 224 KKTTP---MKPCYGSYAK 238
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 27.5 bits (62), Expect = 8.5
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 83 RRILITGGAGFVGSHLVDKLMLMGHEVTVVD 113
R+LI GG G +G + +G VT+++
Sbjct: 144 TRLLIVGG-GLIGCEVATTARKLGLSVTILE 173
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 27.1 bits (61), Expect = 9.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 90 GAGFVGSHLVDKLML-MGHEVTVVDN 114
G+G+VG L ++L + +EVT+VD
Sbjct: 7 GSGYVG--LSLGVLLSLQNEVTIVDI 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.416
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,660,717
Number of extensions: 347413
Number of successful extensions: 1282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 204
Length of query: 360
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 265
Effective length of database: 4,049,298
Effective search space: 1073063970
Effective search space used: 1073063970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)