BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14742
(66 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56
++ G+VEV++E L T+ PGKVFGELAILYNC RTAT+K +N+K W
Sbjct: 85 VMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKT--LVNVKLWA 134
Score = 32.0 bits (71), Expect = 0.089, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 5 ILSKGRVEVSRENK------YLSTLAPGKVFGELAILYNCKRTATI 44
I+SKG+V V+RE+ +L TL G FGE A+ RTA +
Sbjct: 203 IISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANV 248
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56
++ G+VEV++E L T+ PGKVFGELAILYNC RTAT+K +N+K W
Sbjct: 69 VMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKT--LVNVKLWA 118
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56
++ +G ++V N++ +++ G FGELA++Y R AT+K N+K WG
Sbjct: 84 VIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAK--TNVKLWG 133
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56
++ +G ++V N++ +++ G FGELA++Y R AT+K N+K WG
Sbjct: 81 VIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKA--KTNVKLWG 130
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 11 VEVSRENKYLSTLAPGKVFGELAILYNCKRTATI 44
VEV R L P FGE+A+L N R AT+
Sbjct: 218 VEVGR-------LGPSDYFGEIALLMNRPRAATV 244
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56
++ +G ++V N++ +++ G FGELA++Y R AT+K N+K WG
Sbjct: 91 VIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAK--TNVKLWG 140
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56
++ +G ++V N++ +++ G FGELA++Y R AT+K N+K WG
Sbjct: 83 VIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKA--KTNVKLWG 132
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 11 VEVSRENKYLSTLAPGKVFGELAILYNCKRTATI 44
VEV R L P FGE+A+L N R AT+
Sbjct: 220 VEVGR-------LGPSDYFGEIALLMNRPRAATV 246
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56
++ +G ++V N++ +++ G FGELA++Y R AT+K N+K WG
Sbjct: 85 VIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKA--KTNVKLWG 134
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56
++ +G V+V ++++ ++ G FGELA++Y R AT+K +LK WG
Sbjct: 176 VVDQGEVDVYVNGEWVTNISEGGSFGELALIYGTPRAATVKA--KTDLKLWG 225
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 11 VEVSRENKYLSTLAPGKVFGELAILYNCKRTATI 44
VEV R L P FGE+A+L N R AT+
Sbjct: 313 VEVGR-------LGPSDYFGEIALLLNRPRAATV 339
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit
Of Pka
Length = 246
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATI 44
++ KG V+ + +++ PG FGELA++YN R AT+
Sbjct: 53 VVEKGTVDFYVNDNKVNSSGPGSSFGELALMYNSPRAATV 92
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 8 KGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRTSGDNEM 65
+G V V+ N L PG FGE+A++ R+AT+ T++L S S D +M
Sbjct: 60 EGSVSVATPNPV--ELGPGAFFGEMALISGEPRSATVSAATTVSLLSL---HSADFQM 112
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 8 KGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRTSGDNEM 65
+G V V+ N L PG FGE+A++ R+AT+ T++L S S D +M
Sbjct: 64 EGSVSVATPNPV--ELGPGAFFGEMALISGEPRSATVSAATTVSLLSL---HSADFQM 116
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 8 KGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRTSGDNEM 65
+G V V+ N L PG FGE+A++ R+AT+ T++L S S D +M
Sbjct: 60 EGSVSVATPNPV--ELGPGAFFGEMALISGEPRSATVSAATTVSLLSL---HSADFQM 112
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 8 KGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRTSGDNEM 65
+G V V+ N L PG FGE+A++ R+AT+ T++L S S D +M
Sbjct: 62 EGSVSVATPNPV--ELGPGAFFGEMALISGEPRSATVSAATTVSLLSL---HSADFQM 114
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 8 KGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRTSGDNEM 65
+G V V+ N L PG FGE+A++ +AT+ T++L S S D +M
Sbjct: 62 EGSVSVATPNPV--ELGPGAFFGEMALISGEPESATVSAATTVSLLSL---HSADFQM 114
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 8 KGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57
+G V V+ N L PG FGE+A++ R+AT+ T++L S S
Sbjct: 277 EGSVSVATPNPV--ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHS 324
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 5 ILSKGRVEVSR-----ENKYLSTLAPGKVFGELAILYNCKRTAT 43
+++ G+V + R + + L+ L PG++FGE+++L +R+A+
Sbjct: 45 LVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSAS 88
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 8 KGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRTSGDNEM 65
+G V V+ N L PG FGE+A++ +AT+ T++L S S D +M
Sbjct: 62 EGSVSVATPNPV--ELGPGAFFGEMALISGEPWSATVSAATTVSLLSL---HSADFQM 114
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 29 FGELAILYNCKRTATI 44
FGELA++YN R ATI
Sbjct: 112 FGELALMYNTPRAATI 127
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 29 FGELAILYNCKRTATI 44
FGELA++YN R ATI
Sbjct: 118 FGELALMYNTPRAATI 133
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 29 FGELAILYNCKRTATI 44
FGELA++YN R ATI
Sbjct: 108 FGELALMYNTPRAATI 123
>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1253
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRTSGDN 63
++ +K R+ +S+ +KY L +FG++ I R H+ N W +SG +
Sbjct: 283 KLDAKKRINLSKIDKYFKQLQVVPLFGDMQI--ELARYIKTSAHYEENKSRWTCTSSGSS 340
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 29 FGELAILYNCKRTATI 44
FGELA++YN R ATI
Sbjct: 112 FGELALMYNTPRAATI 127
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 6 LSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+ G V V + + LA G FGE+ +L +RTA+++
Sbjct: 122 IQHGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTASVR 161
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 6 LSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+ G V V + + LA G FGE+ +L +RTA+++
Sbjct: 116 IQHGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTASVR 155
>pdb|4AVC|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVC|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 5 ILSKGRVEVSRENK----YLSTLAPGKVFGELAILYNCKRTATI 44
++S G EVS ++ PG + GE+A+L + R+AT+
Sbjct: 59 LISSGSAEVSHVGDDGVAIIARALPGXIVGEIALLRDSPRSATV 102
>pdb|4AVA|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 From Mycobacterium Tuberculosis
pdb|4AVB|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVB|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 5 ILSKGRVEVSRENK----YLSTLAPGKVFGELAILYNCKRTATI 44
++S G EVS ++ PG + GE+A+L + R+AT+
Sbjct: 59 LISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATV 102
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 29 FGELAILYNCKRTATI 44
FGELA++YN + ATI
Sbjct: 219 FGELALMYNTPKAATI 234
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 29 FGELAILYNCKRTATI 44
FGELA++YN + ATI
Sbjct: 219 FGELALMYNTPKAATI 234
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 6 LSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+ G V V + + LA G FGE+ +L +RTA ++
Sbjct: 116 IQHGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTARVR 155
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+L+KG E+ L+ G FGE+++L +RTA+++
Sbjct: 128 VLTKGNKEMK--------LSDGSYFGEISLLTRGRRTASVR 160
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+L+KG E+ L+ G FGE+ +L +RTA+++
Sbjct: 129 VLTKGNKEMK--------LSDGSYFGEICLLTRGRRTASVR 161
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+L+KG E+ L+ G FGE+ +L +RTA+++
Sbjct: 126 VLTKGNKEMK--------LSDGSYFGEICLLTRGRRTASVR 158
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+L+KG E+ L+ G FGE+ +L +RTA+++
Sbjct: 126 VLTKGNKEMK--------LSDGSYFGEICLLTRGRRTASVR 158
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+L+KG E+ L+ G FGE+ +L +RTA+++
Sbjct: 124 VLTKGNKEMK--------LSDGSYFGEICLLTRGRRTASVR 156
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+L+KG E+ L+ G FGE+ +L +RTA+++
Sbjct: 126 VLTKGNKEMK--------LSDGSYFGEICLLTRGRRTASVR 158
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 6 LSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+ G V V + L+ G FGE+ +L +RTA+++
Sbjct: 119 IQHGVVSVLTKGNKEXKLSDGSYFGEICLLTRGRRTASVR 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,860,098
Number of Sequences: 62578
Number of extensions: 54496
Number of successful extensions: 144
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 48
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)