Query psy14742
Match_columns 66
No_of_seqs 139 out of 1176
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 19:29:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ocp_A PRKG1 protein; serine/t 99.3 5.8E-12 2E-16 71.1 6.2 56 3-58 67-122 (139)
2 3pna_A CAMP-dependent protein 99.3 1.5E-11 5E-16 70.6 6.7 55 3-57 82-136 (154)
3 3ukn_A Novel protein similar t 99.2 1.9E-11 6.6E-16 73.3 5.9 56 3-58 119-176 (212)
4 4f8a_A Potassium voltage-gated 99.2 4.4E-11 1.5E-15 68.3 7.0 56 3-58 71-128 (160)
5 4f7z_A RAP guanine nucleotide 99.2 8.9E-12 3.1E-16 88.8 4.9 61 3-64 382-443 (999)
6 3shr_A CGMP-dependent protein 99.2 3.1E-11 1.1E-15 75.4 6.8 54 3-56 83-136 (299)
7 2qcs_B CAMP-dependent protein 99.2 1.1E-10 3.8E-15 72.4 7.3 55 3-57 83-137 (291)
8 3mdp_A Cyclic nucleotide-bindi 99.2 7.5E-11 2.6E-15 66.1 6.0 56 3-58 50-113 (142)
9 3of1_A CAMP-dependent protein 99.2 5.1E-11 1.8E-15 71.9 5.4 56 3-58 169-225 (246)
10 3idb_B CAMP-dependent protein 99.1 1.1E-10 3.9E-15 67.2 6.4 55 3-57 82-140 (161)
11 3of1_A CAMP-dependent protein 99.1 2.4E-11 8.2E-16 73.4 3.6 55 3-57 51-105 (246)
12 2ptm_A Hyperpolarization-activ 99.1 8.8E-11 3E-15 69.8 5.0 56 3-58 115-171 (198)
13 2pqq_A Putative transcriptiona 99.1 3.3E-10 1.1E-14 63.8 6.6 56 3-58 49-109 (149)
14 3shr_A CGMP-dependent protein 99.1 2.3E-10 8E-15 71.4 6.6 56 3-58 201-262 (299)
15 4din_B CAMP-dependent protein 99.1 8.6E-11 2.9E-15 76.6 4.7 55 3-57 174-228 (381)
16 3b02_A Transcriptional regulat 99.1 4.9E-10 1.7E-14 66.3 7.1 56 3-59 20-80 (195)
17 3bpz_A Potassium/sodium hyperp 99.1 8.6E-11 2.9E-15 70.1 3.7 56 3-58 116-171 (202)
18 2qcs_B CAMP-dependent protein 99.1 5.3E-10 1.8E-14 69.3 7.4 55 3-57 201-261 (291)
19 3gyd_A CNMP-BD protein, cyclic 99.1 2E-10 7E-15 68.1 4.7 56 3-58 83-143 (187)
20 4din_B CAMP-dependent protein 99.0 6.9E-10 2.4E-14 72.3 6.7 55 3-57 292-352 (381)
21 3d0s_A Transcriptional regulat 99.0 9.5E-10 3.2E-14 66.1 6.5 56 3-58 50-110 (227)
22 1o7f_A CAMP-dependent RAP1 gua 99.0 9.9E-10 3.4E-14 72.2 6.9 55 3-57 382-438 (469)
23 2z69_A DNR protein; beta barre 99.0 5.4E-10 1.8E-14 63.3 4.9 56 3-58 56-117 (154)
24 3tnp_B CAMP-dependent protein 99.0 7.7E-10 2.6E-14 73.0 6.4 55 3-57 189-247 (416)
25 2d93_A RAP guanine nucleotide 99.0 2.4E-10 8.1E-15 64.1 3.2 56 3-58 61-117 (134)
26 4ava_A Lysine acetyltransferas 99.0 4.2E-10 1.4E-14 71.3 4.6 55 3-57 57-115 (333)
27 4ev0_A Transcription regulator 99.0 1.2E-09 4.2E-14 65.0 6.3 56 3-58 43-103 (216)
28 2oz6_A Virulence factor regula 99.0 1.9E-09 6.5E-14 63.7 6.8 56 3-58 34-98 (207)
29 3e97_A Transcriptional regulat 99.0 1.3E-09 4.5E-14 65.6 6.1 55 3-57 50-109 (231)
30 3tnp_B CAMP-dependent protein 99.0 1.2E-09 3.9E-14 72.2 6.0 55 3-57 311-376 (416)
31 1zyb_A Transcription regulator 99.0 2.3E-09 8E-14 64.9 6.9 56 3-58 64-125 (232)
32 3dn7_A Cyclic nucleotide bindi 99.0 2E-09 6.9E-14 63.3 6.3 56 3-58 51-112 (194)
33 1vp6_A CNBD, cyclic-nucleotide 99.0 5.3E-10 1.8E-14 62.5 3.6 54 3-58 55-108 (138)
34 3ryp_A Catabolite gene activat 98.9 2.9E-09 1E-13 63.1 6.9 56 3-58 40-101 (210)
35 3fx3_A Cyclic nucleotide-bindi 98.9 2E-09 6.8E-14 65.0 5.8 56 3-58 55-115 (237)
36 2gau_A Transcriptional regulat 98.9 1.7E-09 5.7E-14 65.2 5.2 56 3-58 54-114 (232)
37 3kcc_A Catabolite gene activat 98.9 4E-09 1.4E-13 65.1 7.0 56 3-58 90-151 (260)
38 3iwz_A CAP-like, catabolite ac 98.9 5.5E-09 1.9E-13 62.6 7.4 56 3-58 55-116 (230)
39 1o5l_A Transcriptional regulat 98.9 4.4E-09 1.5E-13 63.0 6.2 56 3-58 43-104 (213)
40 1o7f_A CAMP-dependent RAP1 gua 98.8 1E-08 3.4E-13 67.4 7.3 55 3-58 86-147 (469)
41 2zcw_A TTHA1359, transcription 98.8 7.9E-09 2.7E-13 61.3 6.2 52 3-55 28-84 (202)
42 3dv8_A Transcriptional regulat 98.8 1.3E-08 4.3E-13 60.6 6.9 56 3-58 47-109 (220)
43 3dkw_A DNR protein; CRP-FNR, H 98.8 1.5E-09 5E-14 65.0 2.3 56 3-58 53-114 (227)
44 4f7z_A RAP guanine nucleotide 98.8 1.1E-08 3.6E-13 73.2 6.9 53 3-56 86-145 (999)
45 3la7_A Global nitrogen regulat 98.8 2.1E-08 7.3E-13 61.1 7.1 56 3-58 64-126 (243)
46 1wgp_A Probable cyclic nucleot 98.7 4.2E-09 1.4E-13 58.8 1.8 56 3-58 50-120 (137)
47 3e6c_C CPRK, cyclic nucleotide 98.7 7.9E-08 2.7E-12 58.6 7.0 52 3-57 53-109 (250)
48 3cf6_E RAP guanine nucleotide 98.7 3.2E-08 1.1E-12 69.3 5.8 55 3-57 77-133 (694)
49 2bgc_A PRFA; bacterial infecti 98.6 2E-07 6.7E-12 56.6 7.3 54 3-57 39-100 (238)
50 3beh_A MLL3241 protein; transm 98.5 1.3E-08 4.5E-13 65.5 0.0 54 3-58 272-325 (355)
51 2fmy_A COOA, carbon monoxide o 98.5 4.5E-07 1.5E-11 54.1 6.6 49 3-58 48-100 (220)
52 1ft9_A Carbon monoxide oxidati 98.3 1.3E-06 4.5E-11 52.2 5.9 49 3-58 44-96 (222)
53 2vpv_A Protein MIF2, MIF2P; nu 92.9 0.69 2.4E-05 27.3 6.8 51 4-58 114-164 (166)
54 2pyt_A Ethanolamine utilizatio 89.4 0.67 2.3E-05 26.0 4.2 46 4-55 79-124 (133)
55 3cew_A Uncharacterized cupin p 88.5 1.8 6.1E-05 23.2 6.9 55 4-62 52-106 (125)
56 3es4_A Uncharacterized protein 88.1 0.41 1.4E-05 26.8 2.6 27 4-30 65-91 (116)
57 2b8m_A Hypothetical protein MJ 87.6 0.96 3.3E-05 24.0 3.9 26 4-29 51-76 (117)
58 3l2h_A Putative sugar phosphat 86.8 2.8 9.5E-05 23.5 5.8 26 3-29 71-96 (162)
59 3es1_A Cupin 2, conserved barr 86.4 1.4 4.8E-05 26.0 4.5 50 4-58 103-153 (172)
60 3h8u_A Uncharacterized conserv 86.1 2 6.9E-05 22.9 4.8 47 4-54 64-111 (125)
61 3bcw_A Uncharacterized protein 86.1 0.68 2.3E-05 25.7 2.8 26 4-29 72-97 (123)
62 2fqp_A Hypothetical protein BP 86.1 1.9 6.5E-05 22.2 4.5 50 4-56 43-93 (97)
63 1sfn_A Conserved hypothetical 86.0 4.1 0.00014 24.7 6.9 48 3-54 189-236 (246)
64 1o5u_A Novel thermotoga mariti 84.9 1.2 4.2E-05 23.7 3.4 25 4-29 53-78 (101)
65 1rc6_A Hypothetical protein YL 84.3 4.3 0.00015 24.7 6.2 49 4-56 85-133 (261)
66 3lwc_A Uncharacterized protein 84.2 3.5 0.00012 22.4 8.1 49 3-56 62-110 (119)
67 2i45_A Hypothetical protein; n 82.7 3.6 0.00012 21.3 5.0 47 4-56 52-99 (107)
68 2ozj_A Cupin 2, conserved barr 82.5 3.7 0.00013 21.4 7.9 49 4-58 62-110 (114)
69 2bnm_A Epoxidase; oxidoreducta 82.4 4.4 0.00015 23.3 5.4 26 4-29 144-172 (198)
70 3rns_A Cupin 2 conserved barre 81.8 6.3 0.00022 23.5 6.7 50 4-59 61-110 (227)
71 1v70_A Probable antibiotics sy 81.4 3.7 0.00013 20.6 6.2 25 4-29 53-77 (105)
72 3i7d_A Sugar phosphate isomera 80.9 5.8 0.0002 22.5 6.1 25 4-29 69-93 (163)
73 4axo_A EUTQ, ethanolamine util 80.8 6.1 0.00021 22.8 7.5 47 4-56 88-134 (151)
74 1o4t_A Putative oxalate decarb 80.1 5.4 0.00018 21.7 5.6 25 4-29 82-106 (133)
75 1yhf_A Hypothetical protein SP 79.1 5 0.00017 20.8 7.9 50 4-59 64-113 (115)
76 2gu9_A Tetracenomycin polyketi 78.4 5.1 0.00017 20.4 6.2 48 4-55 48-95 (113)
77 1x82_A Glucose-6-phosphate iso 78.2 6.1 0.00021 23.1 5.1 50 3-55 99-152 (190)
78 3myx_A Uncharacterized protein 77.6 2.6 8.9E-05 26.2 3.4 27 4-30 190-216 (238)
79 1sfn_A Conserved hypothetical 77.5 9.5 0.00033 23.1 6.3 47 4-56 72-118 (246)
80 2f4p_A Hypothetical protein TM 77.5 6.2 0.00021 21.9 4.8 51 3-56 71-121 (147)
81 3fjs_A Uncharacterized protein 76.9 6.5 0.00022 20.8 6.9 47 4-56 60-106 (114)
82 1sef_A Conserved hypothetical 76.9 5.7 0.00019 24.4 4.8 49 4-56 88-136 (274)
83 1vj2_A Novel manganese-contain 76.8 5.7 0.0002 21.3 4.4 49 4-56 72-120 (126)
84 2o8q_A Hypothetical protein; c 76.8 4 0.00014 22.0 3.8 48 3-55 67-115 (134)
85 4e2g_A Cupin 2 conserved barre 76.0 4.7 0.00016 21.3 3.9 25 4-29 65-89 (126)
86 1sef_A Conserved hypothetical 76.0 11 0.00038 23.1 7.9 50 3-56 206-256 (274)
87 1sq4_A GLXB, glyoxylate-induce 75.2 8.6 0.00029 23.9 5.4 49 4-56 94-142 (278)
88 3kgz_A Cupin 2 conserved barre 74.6 9.5 0.00032 21.7 5.5 44 4-51 68-111 (156)
89 4b29_A Dimethylsulfoniopropion 74.6 6.4 0.00022 24.2 4.6 56 3-62 155-211 (217)
90 2opk_A Hypothetical protein; p 74.2 7.8 0.00027 20.5 4.8 40 4-46 57-97 (112)
91 3h7j_A Bacilysin biosynthesis 73.2 13 0.00043 22.4 6.4 47 4-54 170-216 (243)
92 3d82_A Cupin 2, conserved barr 72.5 7.4 0.00025 19.5 5.9 47 4-56 54-100 (102)
93 3jzv_A Uncharacterized protein 70.5 13 0.00044 21.3 5.4 47 4-54 77-123 (166)
94 2qjv_A Uncharacterized IOLB-li 67.6 21 0.0007 22.6 7.0 58 3-60 52-113 (270)
95 4i4a_A Similar to unknown prot 66.9 12 0.00041 19.7 6.5 52 4-59 58-109 (128)
96 2oa2_A BH2720 protein; 1017534 66.8 14 0.00047 20.3 5.4 49 4-55 68-121 (148)
97 3ht1_A REMF protein; cupin fol 65.7 13 0.00044 19.9 4.2 25 4-29 63-89 (145)
98 2q30_A Uncharacterized protein 64.3 4 0.00014 20.8 1.9 45 4-54 59-104 (110)
99 1dgw_A Canavalin; duplicated s 62.6 8.6 0.00029 22.2 3.2 26 4-29 65-93 (178)
100 1juh_A Quercetin 2,3-dioxygena 62.0 6.5 0.00022 25.2 2.8 49 4-58 276-324 (350)
101 1y9q_A Transcriptional regulat 60.4 21 0.00072 20.3 7.1 25 4-29 130-154 (192)
102 2pfw_A Cupin 2, conserved barr 60.1 16 0.00055 18.8 7.7 46 4-55 58-103 (116)
103 3ibm_A Cupin 2, conserved barr 59.5 22 0.00075 20.2 8.3 50 3-56 79-129 (167)
104 1y3t_A Hypothetical protein YX 58.2 30 0.001 21.3 6.4 26 3-29 242-267 (337)
105 2arc_A ARAC, arabinose operon 53.2 25 0.00086 18.9 4.3 25 4-29 42-66 (164)
106 4h7l_A Uncharacterized protein 52.9 14 0.00047 21.5 2.9 26 3-29 69-96 (157)
107 2vqa_A SLL1358 protein, MNCA; 52.6 22 0.00076 22.3 4.1 27 3-29 258-288 (361)
108 3bu7_A Gentisate 1,2-dioxygena 50.1 27 0.00093 23.1 4.3 26 3-29 317-342 (394)
109 2xlg_A SLL1785 protein, CUCA; 48.8 11 0.00038 23.1 2.2 47 3-52 67-132 (239)
110 1yfu_A 3-hydroxyanthranilate-3 47.8 42 0.0014 19.9 6.8 53 4-61 59-115 (174)
111 1lr5_A Auxin binding protein 1 47.6 34 0.0012 18.9 5.9 50 3-55 64-122 (163)
112 1sq4_A GLXB, glyoxylate-induce 46.9 48 0.0017 20.4 6.8 26 3-29 215-240 (278)
113 2vec_A YHAK, pirin-like protei 45.9 51 0.0018 20.4 8.0 49 5-58 207-255 (256)
114 3d0j_A Uncharacterized protein 45.4 24 0.00083 20.2 3.1 51 3-58 53-110 (140)
115 1fi2_A Oxalate oxidase, germin 43.4 33 0.0011 19.9 3.7 26 4-29 97-129 (201)
116 2d40_A Z3393, putative gentisa 43.1 39 0.0013 21.7 4.2 26 3-29 291-316 (354)
117 1zvf_A 3-hydroxyanthranilate 3 39.8 59 0.002 19.3 6.9 53 4-61 58-117 (176)
118 1uij_A Beta subunit of beta co 39.6 47 0.0016 21.9 4.2 26 4-29 73-101 (416)
119 1j58_A YVRK protein; cupin, de 39.0 37 0.0013 21.6 3.6 37 4-43 103-143 (385)
120 2cav_A Protein (canavalin); vi 35.2 45 0.0015 22.3 3.6 26 4-29 110-138 (445)
121 2oyz_A UPF0345 protein VPA0057 34.3 30 0.001 18.5 2.2 40 6-50 47-87 (94)
122 3nw4_A Gentisate 1,2-dioxygena 29.8 1.2E+02 0.0041 19.9 7.5 48 3-56 302-349 (368)
123 3s7i_A Allergen ARA H 1, clone 28.8 86 0.003 20.8 4.2 27 4-30 68-97 (418)
124 4e2q_A Ureidoglycine aminohydr 27.7 1.1E+02 0.0039 19.0 6.9 47 2-52 209-255 (266)
125 2o1q_A Putative acetyl/propion 27.1 31 0.0011 19.1 1.6 27 4-31 68-96 (145)
126 3lag_A Uncharacterized protein 26.0 11 0.00038 19.6 -0.5 26 4-29 42-69 (98)
127 2ea7_A 7S globulin-1; beta bar 25.1 91 0.0031 20.7 3.8 26 4-29 85-113 (434)
128 1zrr_A E-2/E-2' protein; nicke 23.6 41 0.0014 19.7 1.7 26 4-29 104-132 (179)
129 2jve_A PROD1; LY-6, three-fing 22.6 78 0.0027 16.2 2.4 27 36-62 29-55 (91)
130 2y0o_A Probable D-lyxose ketol 21.6 1.3E+02 0.0045 17.6 6.6 55 2-62 82-156 (175)
131 2e9q_A 11S globulin subunit be 21.4 1.4E+02 0.0047 20.1 4.1 26 4-29 347-377 (459)
132 1fxz_A Glycinin G1; proglycini 20.8 1.5E+02 0.005 20.1 4.1 27 3-29 362-393 (476)
133 1tq5_A Protein YHHW; bicupin, 20.7 1.5E+02 0.0052 18.0 6.4 45 5-59 186-230 (242)
134 2d5f_A Glycinin A3B4 subunit; 20.0 1.5E+02 0.0052 20.1 4.1 26 4-29 392-422 (493)
No 1
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.30 E-value=5.8e-12 Score=71.05 Aligned_cols=56 Identities=48% Similarity=0.772 Sum_probs=50.9
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++.++++.+..+.+|++|||.+++.+.+++++++|.++|.++.++..
T Consensus 67 ~y~i~~G~v~~~~~g~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~ 122 (139)
T 3ocp_A 67 VYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQ 122 (139)
T ss_dssp EEEEEECCEEEEETTEEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHH
T ss_pred EEEEEeCEEEEEECCEEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHH
Confidence 48999999999999999999999999999999999999999999999777776643
No 2
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.27 E-value=1.5e-11 Score=70.63 Aligned_cols=55 Identities=27% Similarity=0.502 Sum_probs=50.2
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEe
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~ 57 (66)
-|+|.+|.+++++.++.+..+.+|++||+.+++.+.+++++++|.++|.++.++.
T Consensus 82 ~y~i~~G~v~~~~~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~ 136 (154)
T 3pna_A 82 FYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDR 136 (154)
T ss_dssp EEEEEESCEEEEETTEEEEEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEH
T ss_pred EEEEEecEEEEEECCEEEEEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeH
Confidence 4899999999999989999999999999999999999999999999977666654
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.23 E-value=1.9e-11 Score=73.35 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=50.8
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCC--ceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNC--KRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~--~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++...+..+..+++|++|||.+++.+. +++++++|.++|+++.++..
T Consensus 119 ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i~~~ 176 (212)
T 3ukn_A 119 IYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLK 176 (212)
T ss_dssp EEEEEECCEEEESSSCEEEEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEEEHH
T ss_pred EEEEEecEEEEEECCeEEEEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEEeHH
Confidence 489999999999888889999999999999999997 99999999999887777643
No 4
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.22 E-value=4.4e-11 Score=68.31 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=50.5
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccC--CceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYN--CKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~--~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++...+..+..+.+|++||+.+++.+ .+++++++|.++|.++.++..
T Consensus 71 ~y~i~~G~v~~~~~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~ 128 (160)
T 4f8a_A 71 LCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRD 128 (160)
T ss_dssp EEEEEESEEEEEETTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHH
T ss_pred EEEEEeeEEEEEECCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHH
Confidence 48999999999998899999999999999999988 799999999999777776643
No 5
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.22 E-value=8.9e-12 Score=88.85 Aligned_cols=61 Identities=28% Similarity=0.309 Sum_probs=51.2
Q ss_pred eEEEEccEEEEEECC-EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEeecCCCcc
Q psy14742 3 DRILSKGRVEVSREN-KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRTSGDNE 64 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~-~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~~~~~~~ 64 (66)
-|||.+|.|+|++.+ ..+..|++||+|||++++.+.||.+|++|.++ .|.+|.++++.|++
T Consensus 382 ~YIIlsG~V~V~~~~~~~v~~L~~Gd~FGElALL~~~PR~aTV~a~~d-~c~fl~i~k~df~~ 443 (999)
T 4f7z_A 382 WYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLRED-NCHFLRVDKEDGNR 443 (999)
T ss_dssp EEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCSCBCSSEEEESSS-SEEEEEEEHHHHHH
T ss_pred EEEEEeeEEEEEEcCCcceEEecCCCcccchhhccCCCeeEEEEEecC-ceEEEEeeHHHHHH
Confidence 499999999999875 67899999999999999999999999999986 24455556666654
No 6
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.22 E-value=3.1e-11 Score=75.41 Aligned_cols=54 Identities=50% Similarity=0.792 Sum_probs=49.4
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
-|+|.+|.+++.++++.+..+.+|++|||.+++.+.||+++++|.++|.++.++
T Consensus 83 ~yiI~~G~v~v~~~g~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~ 136 (299)
T 3shr_A 83 VYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAID 136 (299)
T ss_dssp EEEEEESCEEEEETTEEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEEC
T ss_pred EEEEEEEEEEEEECCEEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEc
Confidence 499999999999999999999999999999999999999999999996665554
No 7
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.17 E-value=1.1e-10 Score=72.40 Aligned_cols=55 Identities=27% Similarity=0.502 Sum_probs=50.1
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEe
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~ 57 (66)
-|+|.+|.+++..+++.+..+.+|++|||.+++.+.+++++++|.++|.++.++.
T Consensus 83 ~y~i~~G~v~~~~~g~~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~ 137 (291)
T 2qcs_B 83 FYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDR 137 (291)
T ss_dssp EEEEEECCEEEEETTEEEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEH
T ss_pred EEEEeeeEEEEEECCeEEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEh
Confidence 4899999999999888899999999999999999999999999999977666654
No 8
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.17 E-value=7.5e-11 Score=66.07 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=47.0
Q ss_pred eEEEEccEEEEEEC---C--EE---EEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KY---LSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~---v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++. + .. +..+.+|++|||.+++.+.+++++++|.++|+++.++.+
T Consensus 50 ~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 113 (142)
T 3mdp_A 50 LMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGA 113 (142)
T ss_dssp EEEEEESCEEEECC---------CEEEEECTTCEECGGGSSTTCBCSSEEEESSCEEEEEEEHH
T ss_pred EEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechHHHcCCCCceEEEEECCcEEEEEEeHH
Confidence 48999999999763 2 35 889999999999999999999999999999777776643
No 9
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.16 E-value=5.1e-11 Score=71.94 Aligned_cols=56 Identities=25% Similarity=0.409 Sum_probs=49.5
Q ss_pred eEEEEccEEEEEECCE-EEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRENK-YLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~-~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++.+. .+..+.+|++|||.+++.+.||+++++|.++|.++.++..
T Consensus 169 ~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~ 225 (246)
T 3of1_A 169 FYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKS 225 (246)
T ss_dssp EEEEEECEEEEEETTTEEEEEEETTCEECHHHHHHTCBCSSEEEESSCEEEEEEEHH
T ss_pred EEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhCCCCcccEEEECCCEEEEEEeHH
Confidence 4899999999998754 7899999999999999999999999999999777766543
No 10
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.15 E-value=1.1e-10 Score=67.18 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=48.0
Q ss_pred eEEEEccEEEEEEC--C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEe
Q psy14742 3 DRILSKGRVEVSRE--N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~--~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~ 57 (66)
-|+|.+|.+++... + ..+..+.+|++|||.+++.+.+++++++|.++|.++.++.
T Consensus 82 ~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~ 140 (161)
T 3idb_B 82 FYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDR 140 (161)
T ss_dssp EEEEEESEEEEEEEETTEEEEEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEH
T ss_pred EEEEEeCEEEEEEcCCCCeEEEEEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeH
Confidence 48999999999763 3 4688999999999999999999999999999977776654
No 11
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.4e-11 Score=73.40 Aligned_cols=55 Identities=29% Similarity=0.444 Sum_probs=49.4
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEe
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~ 57 (66)
-|+|.+|.+++...++.+..+.+|++|||.+++.+.+++++++|.++|.++.++.
T Consensus 51 ~y~i~~G~v~v~~~~~~~~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~ 105 (246)
T 3of1_A 51 FYVVEKGTVDFYVNDNKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDR 105 (246)
T ss_dssp EEEEEECCEEEESTTSCCEEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEEH
T ss_pred EEEEEeeEEEEEECCEEEEecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEEh
Confidence 4899999999998887789999999999999999999999999999976666553
No 12
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.12 E-value=8.8e-11 Score=69.82 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=49.6
Q ss_pred eEEEEccEEEEEEC-CEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE-NKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~-~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++... ++.+..+++|++|||.+++.+.+++++++|.++|+++.++..
T Consensus 115 ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i~~~ 171 (198)
T 2ptm_A 115 MFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQ 171 (198)
T ss_dssp EEEEEECCEEEECTTSCEEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEEEHH
T ss_pred EEEEEeCEEEEEecCCeEEEEecCCCEechHHHcCCCccceEEEEeeEEEEEEEeHH
Confidence 48999999999864 568899999999999999999999999999999888777643
No 13
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.10 E-value=3.3e-10 Score=63.75 Aligned_cols=56 Identities=25% Similarity=0.410 Sum_probs=48.0
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.++++.. + ..+..+.+|++||+.+++.+.+++++++|.++|+++.++..
T Consensus 49 ~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 109 (149)
T 2pqq_A 49 LYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHG 109 (149)
T ss_dssp EEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGTSCEECSSEEEESSCEEEEEEEGG
T ss_pred EEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhcCCCCcceEEEEccceEEEEEeHH
Confidence 48999999999863 2 46889999999999999999999999999999777766643
No 14
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.10 E-value=2.3e-10 Score=71.39 Aligned_cols=56 Identities=34% Similarity=0.385 Sum_probs=49.1
Q ss_pred eEEEEccEEEEEECC------EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSREN------KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~------~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++.. ..+..+++|++|||.+++.+.+|+++++|.++|.++.++..
T Consensus 201 ~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~ 262 (299)
T 3shr_A 201 FFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRD 262 (299)
T ss_dssp EEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGGSSSEECSSEEEESSSEEEEEEEHH
T ss_pred EEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHHhCCCCcceEEEECCCEEEEEEeHH
Confidence 489999999998753 57889999999999999999999999999999777776643
No 15
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.09 E-value=8.6e-11 Score=76.59 Aligned_cols=55 Identities=29% Similarity=0.518 Sum_probs=50.3
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEe
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~ 57 (66)
-|+|.+|.+++++.++.+..+.+|++|||++++.+.||+++++|.++|.++.++.
T Consensus 174 ~yiI~~G~v~v~~~~~~v~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~ 228 (381)
T 4din_B 174 FYVVDQGEVDVYVNGEWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDR 228 (381)
T ss_dssp EEECSSSEEEEEETTEEEEEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEH
T ss_pred EEEEEeeEEEEEECCeEeeeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEch
Confidence 4899999999999999999999999999999999999999999999977666654
No 16
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.08 E-value=4.9e-10 Score=66.31 Aligned_cols=56 Identities=23% Similarity=0.197 Sum_probs=48.2
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEeec
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRT 59 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~~ 59 (66)
-|+|.+|.+++++. + ..+..+.||++||| +++.+.+++++++|.++|+++.++...
T Consensus 20 ~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 20 LYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred EEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 49999999999863 2 46889999999999 999999999999999998777776543
No 17
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.08 E-value=8.6e-11 Score=70.15 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=47.5
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++...+.....+++|++|||.+++.+.+++++++|.++|+++.++..
T Consensus 116 ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~~~ 171 (202)
T 3bpz_A 116 MYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVD 171 (202)
T ss_dssp EEEEEECEEEEECTTSCCEEEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHH
T ss_pred EEEEeccEEEEEECCCeEEEEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEEHH
Confidence 48999999999865433347899999999999999999999999999888777643
No 18
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.07 E-value=5.3e-10 Score=69.33 Aligned_cols=55 Identities=27% Similarity=0.356 Sum_probs=47.6
Q ss_pred eEEEEccEEEEEEC---C---EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEe
Q psy14742 3 DRILSKGRVEVSRE---N---KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~---~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~ 57 (66)
-|+|.+|.+++.+. + ..+..+++|++|||.+++.+.+|+++++|.++|.++.++.
T Consensus 201 ~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~ 261 (291)
T 2qcs_B 201 FFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDR 261 (291)
T ss_dssp EEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGGTCCCCCSSEEEEEEEEEEEEEEH
T ss_pred EEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHHcCCCCcceEEEECCcEEEEEEcH
Confidence 49999999999853 2 4689999999999999999999999999999977766654
No 19
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.05 E-value=2e-10 Score=68.08 Aligned_cols=56 Identities=14% Similarity=0.334 Sum_probs=48.4
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.++++.. + ..+..+.+|++|||.+++.+.+++++++|.++|+++.++..
T Consensus 83 ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~ 143 (187)
T 3gyd_A 83 LLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRD 143 (187)
T ss_dssp EEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHH
T ss_pred EEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHH
Confidence 48999999999864 2 46889999999999999999999999999999777776543
No 20
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.02 E-value=6.9e-10 Score=72.30 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=48.3
Q ss_pred eEEEEccEEEEEECC------EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEe
Q psy14742 3 DRILSKGRVEVSREN------KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~------~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~ 57 (66)
-|+|.+|.+++++.. ..+..+++|++|||.+++.+.||+++++|.++|.++.++.
T Consensus 292 ~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all~~~~r~~tv~A~~~~~ll~i~~ 352 (381)
T 4din_B 292 FYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDR 352 (381)
T ss_dssp EEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGGSCCBCSSEEEESSCBEEEEEEH
T ss_pred EEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHhCCCCceeEEEEcCCEEEEEEeH
Confidence 499999999998751 3688999999999999999999999999999977776654
No 21
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.01 E-value=9.5e-10 Score=66.09 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=48.6
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++. + ..+..+.||++||+.+++.+.+++++++|.++|+++.++..
T Consensus 50 ~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~ 110 (227)
T 3d0s_A 50 LYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRD 110 (227)
T ss_dssp EEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHHHSCSCCSSEEEESSCEEEEEEEHH
T ss_pred EEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHHcCCCCceeEEEEcccEEEEEEeHH
Confidence 48999999999863 3 46889999999999999999999999999999877777643
No 22
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.01 E-value=9.9e-10 Score=72.23 Aligned_cols=55 Identities=27% Similarity=0.317 Sum_probs=49.0
Q ss_pred eEEEEccEEEEEECC-EEEEEeCCCCEEeccccccCCceeEEEEEcc-ceEEEEEEe
Q psy14742 3 DRILSKGRVEVSREN-KYLSTLAPGKVFGELAILYNCKRTATIKVHW-TLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~-~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~-~~~v~~l~~ 57 (66)
-|||.+|.+++++.+ ..+..+.+|++|||.+++.+.+++++++|.+ +|.++.++.
T Consensus 382 ~yiI~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~ 438 (469)
T 1o7f_A 382 WYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDK 438 (469)
T ss_dssp EEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEH
T ss_pred EEEEEEeEEEEEEcCCeeEEEecCCCEEEEehhhcCCCceEEEEEecCCEEEEEEcH
Confidence 489999999999875 4889999999999999999999999999998 677776654
No 23
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.00 E-value=5.4e-10 Score=63.27 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=47.5
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCc-eeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCK-RTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~-r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++. + ..+..+.+|++||+.+++.+.+ +.++++|.++|+++.++..
T Consensus 56 ~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 117 (154)
T 2z69_A 56 FYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNK 117 (154)
T ss_dssp EEEEEESCEEEECCCC-----CCEEECTTEEESGGGGGSSCSBCSSEEEESSSEEEEEEEHH
T ss_pred EEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhccCCCCCceEEEEccceEEEEECHH
Confidence 48999999999863 2 3578999999999999999988 9999999999888777654
No 24
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.00 E-value=7.7e-10 Score=73.01 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=47.3
Q ss_pred eEEEEccEEEEEEC----CEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEe
Q psy14742 3 DRILSKGRVEVSRE----NKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~----~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~ 57 (66)
-|||.+|.++++.. ...+..+.+|++|||++++.+.+|+++++|.++|.++.++.
T Consensus 189 ~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r 247 (416)
T 3tnp_B 189 FYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDR 247 (416)
T ss_dssp EEEEEECEEEEEEECSSCEEEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEH
T ss_pred EEEEEeeEEEEEEecCCCEEEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEee
Confidence 49999999999864 25688999999999999999999999999999966655543
No 25
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=98.99 E-value=2.4e-10 Score=64.09 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=47.0
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEE-EEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATI-KVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv-~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++.+.....+.+|++||+.+++.+.++.+++ +|.++|.++.++..
T Consensus 61 ~y~i~~G~v~~~~~~g~~~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 117 (134)
T 2d93_A 61 WYVILNGTVEISHPDGKVENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQ 117 (134)
T ss_dssp EEECCBSCEEEECSSSCEEEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHH
T ss_pred EEEEEeCEEEEEcCCCcEEEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHH
Confidence 489999999998753222779999999999999999999898 99999887777643
No 26
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=98.99 E-value=4.2e-10 Score=71.25 Aligned_cols=55 Identities=29% Similarity=0.381 Sum_probs=47.9
Q ss_pred eEEEEccEEEEEECC----EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEe
Q psy14742 3 DRILSKGRVEVSREN----KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~----~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~ 57 (66)
-|+|.+|.+++++.+ ..+..+.+|++|||.+++.+.+++++++|.++|+++.++.
T Consensus 57 ~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~~~i~~ 115 (333)
T 4ava_A 57 FLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGR 115 (333)
T ss_dssp EEEEEECCEEEEEECTTCCEEEEEECTTCEESHHHHHHTCBCSSEEEESSCEEEEEECH
T ss_pred EEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHHhcCCCCceEEEEEecCEEEEEEcH
Confidence 499999999998742 4788999999999999999999999999999977666654
No 27
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=98.99 E-value=1.2e-09 Score=64.97 Aligned_cols=56 Identities=25% Similarity=0.399 Sum_probs=48.7
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.++++.. + ..+..++||++||+.+++.+.+++++++|.++|+++.++..
T Consensus 43 ~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~ 103 (216)
T 4ev0_A 43 LYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFRE 103 (216)
T ss_dssp EEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHHHCCBCSSEEEESSSEEEEEEEHH
T ss_pred EEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhcCCCCcceEEEEcCCEEEEEEcHH
Confidence 48999999999864 3 47889999999999999999999999999999877777643
No 28
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=98.97 E-value=1.9e-09 Score=63.75 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=46.6
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCC----ceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNC----KRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~----~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++. + ..+..+.||++||+.+++.+. +++++++|.++|+++.++..
T Consensus 34 ~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~ 98 (207)
T 2oz6_A 34 LFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYA 98 (207)
T ss_dssp EEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEEEEEEHH
T ss_pred EEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCcceEEEECCcEEEEEECHH
Confidence 48999999999863 2 468899999999999999887 89999999999887777643
No 29
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=98.97 E-value=1.3e-09 Score=65.59 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=47.9
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEe
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~ 57 (66)
-|+|.+|.++++.. + ..+..++||++||+.+++.+.+++++++|.++|+++.++.
T Consensus 50 ~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~ 109 (231)
T 3e97_A 50 LHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHR 109 (231)
T ss_dssp EEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTTTCCCCCCEEEEESSCEEEEEECH
T ss_pred EEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHHhCCCCceEEEEECCcEEEEEEeH
Confidence 58999999999864 2 4688999999999999999999999999999987776654
No 30
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=98.96 E-value=1.2e-09 Score=72.17 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=47.2
Q ss_pred eEEEEccEEEEEEC---------C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEe
Q psy14742 3 DRILSKGRVEVSRE---------N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---------~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~ 57 (66)
-|||.+|.+++++. + ..+..+++|++|||.+++.+.+|+++++|.++|.++.++.
T Consensus 311 ~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~ 376 (416)
T 3tnp_B 311 FFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDV 376 (416)
T ss_dssp EEEEEEEEEEEECC------------CEEEEECTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEH
T ss_pred EEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEH
Confidence 49999999999754 2 3688999999999999999999999999999977666654
No 31
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=98.96 E-value=2.3e-09 Score=64.93 Aligned_cols=56 Identities=7% Similarity=0.065 Sum_probs=48.4
Q ss_pred eEEEEccEEEEEEC-----CEEEEEeCCCCEEeccccccCCc-eeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE-----NKYLSTLAPGKVFGELAILYNCK-RTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~-----~~~v~~l~~G~~fGe~~l~~~~~-r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++. ...+..+.+|++|||.+++.+.+ ++++++|.++|+++.++..
T Consensus 64 ~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~ 125 (232)
T 1zyb_A 64 LCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKA 125 (232)
T ss_dssp EEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHH
T ss_pred EEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehHHhCCCCCCceEEEEccceEEEEEEHH
Confidence 48999999999863 25788999999999999999987 9999999999888777643
No 32
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=98.96 E-value=2e-09 Score=63.30 Aligned_cols=56 Identities=11% Similarity=-0.066 Sum_probs=47.5
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEecc-ccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGEL-AILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~-~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.++++.. + ..+..+.||++|||. +++.+.|++++++|.++|+++.++..
T Consensus 51 ~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~~i~~~ 112 (194)
T 3dn7_A 51 NYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYT 112 (194)
T ss_dssp EEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHHHHHTCBCSSEEEESSCEEEEEEEHH
T ss_pred EEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHHHhcCCCCceEEEEECCEEEEEEeHH
Confidence 48999999999863 2 467899999999997 77888999999999999887777643
No 33
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=98.95 E-value=5.3e-10 Score=62.49 Aligned_cols=54 Identities=33% Similarity=0.441 Sum_probs=46.8
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.++++..+ ...+.+|++||+.+++.+.+++++++|.++|+++.++..
T Consensus 55 ~y~i~~G~v~~~~~~--~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 108 (138)
T 1vp6_A 55 MFFVVEGSVSVATPN--PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSA 108 (138)
T ss_dssp EEEEEESCEEECSSS--CEEECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEHH
T ss_pred EEEEEeeEEEEEeCC--cceECCCCEeeehHhccCCCceeEEEECCCEEEEEECHH
Confidence 489999999998766 357999999999999999999999999999877776643
No 34
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=98.95 E-value=2.9e-09 Score=63.06 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=48.2
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCC-ceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNC-KRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~-~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.++++.. + ..+..+.||++||+.+++.+. +++++++|.++|+++.++..
T Consensus 40 ~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~ 101 (210)
T 3ryp_A 40 LYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYK 101 (210)
T ss_dssp EEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCSSEEEESSCEEEEEEEHH
T ss_pred EEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEEEEcHH
Confidence 48999999999864 2 468899999999999999987 89999999999887777643
No 35
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=98.93 E-value=2e-09 Score=65.03 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=48.6
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.++++.. + ..+..++||++||+.+++.+.+++++++|.++|+++.++..
T Consensus 55 ~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~ 115 (237)
T 3fx3_A 55 IHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSP 115 (237)
T ss_dssp EEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHHHHTCCCSSEEEESSSEEEEEEEHH
T ss_pred EEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHHhcCCCCCceEEECCceEEEEEcHH
Confidence 48999999999873 2 47889999999999999999999999999999877776643
No 36
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=98.92 E-value=1.7e-09 Score=65.19 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=48.0
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++. + ..+..+.||++||+.+++.+.+++++++|.++|+++.++..
T Consensus 54 ~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~ 114 (232)
T 2gau_A 54 LFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVE 114 (232)
T ss_dssp EEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEHH
T ss_pred EEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCCCCcceEEEEecceEEEEEEHH
Confidence 48999999999853 2 47899999999999999999999999999999888777643
No 37
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=98.92 E-value=4e-09 Score=65.09 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=48.2
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCC-ceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNC-KRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~-~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++. + ..+..+.||++||+.+++.+. +++++++|.++|+++.++..
T Consensus 90 ~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~~i~~~ 151 (260)
T 3kcc_A 90 LYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYK 151 (260)
T ss_dssp EEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCCSEEEESSCEEEEEEEHH
T ss_pred EEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCceEEEECCCeEEEEEcHH
Confidence 48999999999864 2 468899999999999999987 89999999999877776643
No 38
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=98.92 E-value=5.5e-09 Score=62.63 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=47.6
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCC-ceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNC-KRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~-~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++. + ..+..++||++|||.+++.+. +++++++|.++|+++.++..
T Consensus 55 ~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~ 116 (230)
T 3iwz_A 55 LYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYE 116 (230)
T ss_dssp EEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEEEEHH
T ss_pred EEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEEEeHH
Confidence 48999999999863 2 468899999999999999874 79999999999887777643
No 39
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=98.89 E-value=4.4e-09 Score=63.01 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=48.0
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCC-ceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNC-KRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~-~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++. + ..+..+.+|++||+.+++.+. +++++++|.++|+++.++..
T Consensus 43 ~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~ 104 (213)
T 1o5l_A 43 VLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKE 104 (213)
T ss_dssp EEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEEEEHH
T ss_pred EEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCCCCceEEEEEccceEEEEEeHH
Confidence 48999999999863 2 468899999999999999876 89999999999888777654
No 40
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=98.85 E-value=1e-08 Score=67.43 Aligned_cols=55 Identities=27% Similarity=0.254 Sum_probs=47.9
Q ss_pred eEEEEccEEEEEEC---C----EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N----KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~----~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++. + ..+..+++|++|||.+ +.+.+++++++|.++|.++.++..
T Consensus 86 ~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~ 147 (469)
T 1o7f_A 86 WYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQE 147 (469)
T ss_dssp EEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHH
T ss_pred EEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHH
Confidence 48999999999874 2 5789999999999999 999999999999999777766643
No 41
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.84 E-value=7.9e-09 Score=61.26 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=45.7
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEE
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSW 55 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l 55 (66)
-|+|.+|.++++.. + ..+..+.||++||+ +++.+.+++++++|.++|+++.+
T Consensus 28 ~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~v~~i 84 (202)
T 2zcw_A 28 AYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVRLEPL 84 (202)
T ss_dssp CEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEEEEEC
T ss_pred EEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEEEEEE
Confidence 48999999999863 2 46889999999999 88889999999999999887776
No 42
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=98.83 E-value=1.3e-08 Score=60.65 Aligned_cols=56 Identities=13% Similarity=0.038 Sum_probs=48.1
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCE--EeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKV--FGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~--fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++++. + ..+..++||++ ||+.+++.+.|++++++|.++|+++.++..
T Consensus 47 ~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 109 (220)
T 3dv8_A 47 LLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAE 109 (220)
T ss_dssp EEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEEEEEHH
T ss_pred EEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEEEEEHH
Confidence 48999999999863 2 46789999999 799999999999999999999877776643
No 43
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=98.81 E-value=1.5e-09 Score=65.05 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=48.3
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCc-eeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCK-RTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~-r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.++++.. + ..+..++||++||+.+++.+.+ ++++++|.++|+++.++.+
T Consensus 53 ~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~ 114 (227)
T 3dkw_A 53 FYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNK 114 (227)
T ss_dssp EEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTTTTTCSBCSSCEEESSCCEEEEEESH
T ss_pred EEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHhcCCCCCCceEEEEcCcEEEEEEeHH
Confidence 48999999999764 2 4678899999999999999988 9999999999888777654
No 44
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.81 E-value=1.1e-08 Score=73.18 Aligned_cols=53 Identities=30% Similarity=0.302 Sum_probs=45.7
Q ss_pred eEEEEccEEEEEEC-------CEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 3 DRILSKGRVEVSRE-------NKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 3 ~~iI~~G~v~v~~~-------~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
=|||++|.|.|... +..+..+.+|+.||| +++.+.||++|++|.++|+++.++
T Consensus 86 fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~ 145 (999)
T 4f7z_A 86 WYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIE 145 (999)
T ss_dssp EEEEEESEEEEEECSSSCTTSCEEEEEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEE
T ss_pred EEEEEeeEEEEEEecCCCCCCceeEEEecCCcchhh-hhccCCCcceEEEeccceEEEEEE
Confidence 49999999999864 257899999999999 899999999999999997655554
No 45
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=98.80 E-value=2.1e-08 Score=61.11 Aligned_cols=56 Identities=29% Similarity=0.248 Sum_probs=47.0
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCc--eeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCK--RTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~--r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.++++.. + ..+..+.||++||+.+++.+.+ +.++++|.++|+++.++..
T Consensus 64 ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~ 126 (243)
T 3la7_A 64 VYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIE 126 (243)
T ss_dssp EEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCCEEEEESSSEEEEEEEHH
T ss_pred EEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcceEEEEEccceEEEEEcHH
Confidence 48999999999863 2 4688999999999999998876 5689999999887777643
No 46
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=98.71 E-value=4.2e-09 Score=58.83 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=43.6
Q ss_pred eEEEEccEEEEEEC--C--EEE--EEeCCCCEEecccc---ccCCc------eeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE--N--KYL--STLAPGKVFGELAI---LYNCK------RTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~--~--~~v--~~l~~G~~fGe~~l---~~~~~------r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++... + ..+ ..+.+|++|||.++ +.+.+ ++++++|.++|+++.++..
T Consensus 50 ~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~ 120 (137)
T 1wgp_A 50 MLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIAD 120 (137)
T ss_dssp EEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHH
T ss_pred EEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHH
Confidence 48999999997632 2 233 49999999999995 77764 5789999999887777643
No 47
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=98.68 E-value=7.9e-08 Score=58.61 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=44.0
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEe
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~ 57 (66)
-|+|.+|.+++++. + ..+..+.||++||+ ++.+. ++++++|.++|+++.++.
T Consensus 53 ~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l~~~-~~~~~~A~~~~~v~~i~~ 109 (250)
T 3e6c_C 53 MIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LYPTG-NNIYATAMEPTRTCWFSE 109 (250)
T ss_dssp EEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CSCCS-CCEEEEESSSEEEEEECH
T ss_pred EEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ecCCC-CceEEEEcccEEEEEEcH
Confidence 58999999999864 2 46889999999999 77777 999999999987777654
No 48
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=98.68 E-value=3.2e-08 Score=69.25 Aligned_cols=55 Identities=27% Similarity=0.317 Sum_probs=49.5
Q ss_pred eEEEEccEEEEEECC-EEEEEeCCCCEEeccccccCCceeEEEEEcc-ceEEEEEEe
Q psy14742 3 DRILSKGRVEVSREN-KYLSTLAPGKVFGELAILYNCKRTATIKVHW-TLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~-~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~-~~~v~~l~~ 57 (66)
-|+|.+|.+++++.+ ..+..+.+|++|||.+++.+.+++++++|.+ +|+++.++.
T Consensus 77 lyiIlsG~V~v~~~g~~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~ 133 (694)
T 3cf6_E 77 WYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDK 133 (694)
T ss_dssp EEEEEESEEEEEETTTEEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEH
T ss_pred EEEEEEEEEEEEEeCCEEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeH
Confidence 489999999999876 5789999999999999999999999999999 588887764
No 49
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=98.61 E-value=2e-07 Score=56.56 Aligned_cols=54 Identities=9% Similarity=-0.075 Sum_probs=41.9
Q ss_pred eEEEEccEEEEEEC---C--EEEEEeCCCCEEeccccccCCce--eEEEEEc-cceEEEEEEe
Q psy14742 3 DRILSKGRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKR--TATIKVH-WTLNLKSWGS 57 (66)
Q Consensus 3 ~~iI~~G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~r--~~tv~A~-~~~~v~~l~~ 57 (66)
-|+|.+|.+++++. + ..+..+ ||++||+.+++.+.++ +.++.|. ++|+++.++.
T Consensus 39 ~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v~~i~~ 100 (238)
T 2bgc_A 39 CIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKI 100 (238)
T ss_dssp EEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEEEEEEH
T ss_pred EEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcCcceeEEEEEcceEEEEEeH
Confidence 48999999999873 2 467788 9999999999988764 5667777 4766666654
No 50
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.50 E-value=1.3e-08 Score=65.49 Aligned_cols=54 Identities=33% Similarity=0.441 Sum_probs=0.0
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.+++...+ ...+++|++|||.+++.+.+++++++|.++|+++.++.+
T Consensus 272 ly~I~~G~v~v~~~~--~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~ 325 (355)
T 3beh_A 272 MFFVVEGSVSVATPN--PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSA 325 (355)
T ss_dssp --------------------------------------------------------
T ss_pred EEEEEeeEEEEEECC--eeEECCCCEEeehHHhCCCCcceEEEECccEEEEEEeHH
Confidence 489999999998766 358999999999999999999999999999777766644
No 51
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=98.49 E-value=4.5e-07 Score=54.12 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=40.7
Q ss_pred eEEEEccEEEEEEC--C--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSRE--N--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~--~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.++++.. + ..+..+.||++||+ +++++++|.++|+++.++..
T Consensus 48 ~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~-------~~~~~~~A~~~~~v~~i~~~ 100 (220)
T 2fmy_A 48 VFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT-------HTRAFIQAMEDTTILYTDIR 100 (220)
T ss_dssp EEEEEESEEEEEEECSSCEEEEEEEETTCEEES-------CSSSEEEESSSEEEEEEEHH
T ss_pred EEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC-------ccceEEEEcCcEEEEEEeHH
Confidence 48999999999532 3 46889999999999 78899999999888777643
No 52
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=98.33 E-value=1.3e-06 Score=52.21 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=40.3
Q ss_pred eEEEEccEEEEEE--CC--EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSR--EN--KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~--~~--~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|+|.+|.++++. ++ ..+..++||++|| .+++++++|.++|+++.++..
T Consensus 44 ~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG-------~~~~~~~~A~~~~~v~~i~~~ 96 (222)
T 1ft9_A 44 VFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-------MHSGCLVEATERTEVRFADIR 96 (222)
T ss_dssp EEEEEESEEEEEEEETTEEEEEEEEETTCEEE-------SCSSCEEEESSCEEEEEECHH
T ss_pred EEEEEecEEEEEECCCCCEEEEEEcCCCCEec-------CCCCEEEEEccceEEEEEeHH
Confidence 4999999999963 23 4678999999999 688999999999877776543
No 53
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=92.91 E-value=0.69 Score=27.28 Aligned_cols=51 Identities=14% Similarity=-0.024 Sum_probs=34.6
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
++|++|.+++...++.. .+.+||.|= +-.+.++...-...+++++++....
T Consensus 114 ~yVLeG~v~vtl~g~~~-~L~~Gds~~---iP~g~~H~~~N~~d~~Arll~Vq~~ 164 (166)
T 2vpv_A 114 FHVIQGIVEVTVCKNKF-LSVKGSTFQ---IPAFNEYAIANRGNDEAKMFFVQVT 164 (166)
T ss_dssp EEEEESEEEEEETTEEE-EEETTCEEE---ECTTCEEEEEECSSSCEEEEEEEEE
T ss_pred EEEEEeEEEEEECCEEE-EEcCCCEEE---ECCCCCEEEEECCCCCEEEEEEEEE
Confidence 68899999999988653 799999753 2234555555555556666665543
No 54
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=89.40 E-value=0.67 Score=25.97 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=29.5
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSW 55 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l 55 (66)
++|++|.+++..+++.. .+++||.|= +-.+.++... ..++++.+..
T Consensus 79 ~~VLeG~~~l~~~g~~~-~l~~GD~i~---~p~g~~h~~~--~~~~~~~l~v 124 (133)
T 2pyt_A 79 DMVLEGELHVRHEGETM-IAKAGDVMF---IPKGSSIEFG--TPTSVRFLYV 124 (133)
T ss_dssp EEEEEEEEEEEETTEEE-EEETTCEEE---ECTTCEEEEE--EEEEEEEEEE
T ss_pred EEEEECEEEEEECCEEE-EECCCcEEE---ECCCCEEEEE--eCCCEEEEEE
Confidence 68899999999887664 799999763 2223444443 3345444433
No 55
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=88.53 E-value=1.8 Score=23.17 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=34.5
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEeecCCC
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRTSGD 62 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~~~~~ 62 (66)
|+|++|.+.+..+++. ..+++||++= +-.+.++.......+++.++.+..+...+
T Consensus 52 ~~vl~G~~~~~i~~~~-~~l~~Gd~i~---i~~~~~H~~~~~~~~~~~~~~i~~~~~~~ 106 (125)
T 3cew_A 52 YGILSGKGFITIDGEK-IELQAGDWLR---IAPDGKRQISAASDSPIGFLCIQVKAGSL 106 (125)
T ss_dssp EEEEEEEEEEEETTEE-EEEETTEEEE---ECTTCCEEEEEBTTBCEEEEEEEEETTCC
T ss_pred EEEEeCEEEEEECCEE-EEeCCCCEEE---ECCCCcEEEEcCCCCCEEEEEEEcCCccc
Confidence 5699999999888765 4688988752 22345554433333456666666665544
No 56
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=88.06 E-value=0.41 Score=26.76 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=21.6
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEe
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFG 30 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fG 30 (66)
+.|++|++.+...+.....+++||.|-
T Consensus 65 ~~iLeG~~~lt~ddG~~~~l~aGD~~~ 91 (116)
T 3es4_A 65 FVVVEGEALYSQADADPVKIGPGSIVS 91 (116)
T ss_dssp EEEEECCEEEEETTCCCEEECTTEEEE
T ss_pred EEEEEeEEEEEeCCCeEEEECCCCEEE
Confidence 689999999988754446799999763
No 57
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=87.57 E-value=0.96 Score=23.95 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
++|++|.+.+...++....+++||.+
T Consensus 51 ~~Vl~G~~~~~i~~~~~~~l~~Gd~i 76 (117)
T 2b8m_A 51 LIIIKGEMTLTLEDQEPHNYKEGNIV 76 (117)
T ss_dssp EEEEESEEEEEETTSCCEEEETTCEE
T ss_pred EEEEeCEEEEEECCEEEEEeCCCCEE
Confidence 57899999998877654478898875
No 58
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=86.80 E-value=2.8 Score=23.51 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=21.4
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
-++|++|.+++...++. ..+++||.+
T Consensus 71 ~~~Vl~G~~~~~~~~~~-~~l~~Gd~i 96 (162)
T 3l2h_A 71 AVYVLSGKGTLTMENDQ-YPIAPGDFV 96 (162)
T ss_dssp EEEEEESCEEEEETTEE-EEECTTCEE
T ss_pred EEEEEEEEEEEEECCEE-EEeCCCCEE
Confidence 37899999999888765 579999975
No 59
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=86.44 E-value=1.4 Score=26.01 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=32.4
Q ss_pred EEEEccEEEEEEC-CEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 4 RILSKGRVEVSRE-NKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 4 ~iI~~G~v~v~~~-~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
.+|++|++++... ++ ...|++||.+ - -.+.++...-...++++++++-..
T Consensus 103 ~~VLeGel~l~ld~ge-~~~L~~GDsi-~---~~g~~H~~~N~g~~~ar~l~V~~P 153 (172)
T 3es1_A 103 GIVLEGEIELELDDGA-KRTVRQGGII-V---QRGTNHLWRNTTDKPCRIAFILIE 153 (172)
T ss_dssp EEEEESCEEEECGGGC-EEEECTTCEE-E---ECSCCBEEECCSSSCEEEEEEEEE
T ss_pred EEEEeCEEEEEECCCe-EEEECCCCEE-E---eCCCcEEEEeCCCCCEEEEEEEcC
Confidence 4899999999877 44 3579999997 2 234555554444455555554433
No 60
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=86.11 E-value=2 Score=22.85 Aligned_cols=47 Identities=13% Similarity=-0.016 Sum_probs=28.3
Q ss_pred EEEEccEEEEEE-CCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEE
Q psy14742 4 RILSKGRVEVSR-ENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKS 54 (66)
Q Consensus 4 ~iI~~G~v~v~~-~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~ 54 (66)
++|++|.+++.. .++. ..+++||.+= +-.+.++.......+++.++.
T Consensus 64 ~~Vl~G~~~~~~~~~~~-~~l~~Gd~~~---i~~~~~H~~~n~~~~~~~~l~ 111 (125)
T 3h8u_A 64 WTVISGEAEYHQGNGIV-THLKAGDIAI---AKPGQVHGAMNSGPEPFIFVS 111 (125)
T ss_dssp EEEEECEEEEECSTTCE-EEEETTEEEE---ECTTCCCEEEECSSSCEEEEE
T ss_pred EEEEEeEEEEEECCCeE-EEeCCCCEEE---ECCCCEEEeEeCCCCCEEEEE
Confidence 579999999987 4543 5688998742 233455554433334444443
No 61
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=86.11 E-value=0.68 Score=25.70 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=20.0
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
++|++|++.+...+.....+++||.+
T Consensus 72 ~~Vl~G~~~l~~~~g~~~~l~~GD~~ 97 (123)
T 3bcw_A 72 CHIIEGEARLVDPDGTVHAVKAGDAF 97 (123)
T ss_dssp EEEEEEEEEEECTTCCEEEEETTCEE
T ss_pred EEEEEEEEEEEECCCeEEEECCCCEE
Confidence 68999999998744333579999976
No 62
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=86.06 E-value=1.9 Score=22.16 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=29.8
Q ss_pred EEEEccEEEEEECCE-EEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 4 RILSKGRVEVSRENK-YLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~-~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
++|++|.+++...+. ....+++||.+=. -.+.++.......+++.++...
T Consensus 43 ~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~---p~~~~H~~~N~g~~~~~~l~v~ 93 (97)
T 2fqp_A 43 VPMTTGPLLLETPEGSVTSQLTRGVSYTR---PEGVEHNVINPSDTEFVFVEIE 93 (97)
T ss_dssp EESSCEEEEEEETTEEEEEEECTTCCEEE---CTTCEEEEECCSSSCEEEEEEE
T ss_pred EEEeecEEEEEeCCCCEEEEEcCCCEEEe---CCCCcccCEeCCCCcEEEEEEE
Confidence 468999999988774 4568999987632 1234444333223344444443
No 63
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=85.99 E-value=4.1 Score=24.73 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=32.5
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEE
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKS 54 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~ 54 (66)
.++|++|+..+..+++.. .+++||++- +-.+.++.....-.++++.++
T Consensus 189 ~~~vLeG~~~~~~~~~~~-~l~~GD~~~---~~~~~pH~~~n~g~~~~~yl~ 236 (246)
T 1sfn_A 189 GLLMLEGEGLYKLEENYY-PVTAGDIIW---MGAHCPQWYGALGRNWSKYLL 236 (246)
T ss_dssp EEEEEECEEEEEETTEEE-EEETTCEEE---ECTTCCEEEEEESSSCEEEEE
T ss_pred EEEEEECEEEEEECCEEE-EcCCCCEEE---ECCCCCEEEEcCCCCCEEEEE
Confidence 578999999998887764 799999742 333456655555555554443
No 64
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=84.92 E-value=1.2 Score=23.72 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEccEEEEEEC-CEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRE-NKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~-~~~v~~l~~G~~f 29 (66)
++|++|.+.+..+ ++. ..+++||.+
T Consensus 53 ~~Vl~G~~~~~i~~g~~-~~l~~GD~i 78 (101)
T 1o5u_A 53 CYILEGKVEVTTEDGKK-YVIEKGDLV 78 (101)
T ss_dssp EEEEEEEEEEEETTCCE-EEEETTCEE
T ss_pred EEEEeCEEEEEECCCCE-EEECCCCEE
Confidence 6899999999887 543 579999975
No 65
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=84.33 E-value=4.3 Score=24.70 Aligned_cols=49 Identities=12% Similarity=-0.022 Sum_probs=31.6
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
.+|++|++++...++. ..|++||.+= +-.+.++.......++++++++.
T Consensus 85 ~~Vl~G~l~~~~~~~~-~~L~~Gd~~~---~~~~~~H~~~N~~~~~~~~l~v~ 133 (261)
T 1rc6_A 85 LYVISGNITAKAEGKT-FALSEGGYLY---CPPGSLMTFVNAQAEDSQIFLYK 133 (261)
T ss_dssp EEEEESEEEEEETTEE-EEEETTEEEE---ECTTCCCEEEECSSSCEEEEEEE
T ss_pred EEEEEeEEEEEECCEE-EEECCCCEEE---ECCCCCEEEEeCCCCCEEEEEEE
Confidence 5799999999988764 5799998753 22345555444334455555544
No 66
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=84.21 E-value=3.5 Score=22.40 Aligned_cols=49 Identities=18% Similarity=0.083 Sum_probs=31.0
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
-++|++|++++..+++. ..+++||.+= +-.+.++..+... ++++++++-
T Consensus 62 ~~~Vl~G~~~~~~~g~~-~~l~~GD~v~---ip~g~~H~~~~~~-~~~~~l~v~ 110 (119)
T 3lwc_A 62 VMIVLEGRLSVSTDGET-VTAGPGEIVY---MPKGETVTIRSHE-EGALTAYVT 110 (119)
T ss_dssp EEEEEEEEEEEEETTEE-EEECTTCEEE---ECTTCEEEEEEEE-EEEEEEEEE
T ss_pred EEEEEeCEEEEEECCEE-EEECCCCEEE---ECCCCEEEEEcCC-CCeEEEEEE
Confidence 36899999999887764 4799999752 2234555444332 445555443
No 67
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=82.66 E-value=3.6 Score=21.29 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=30.6
Q ss_pred EEEEccEEEEEECC-EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 4 RILSKGRVEVSREN-KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 4 ~iI~~G~v~v~~~~-~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
++|++|.+++...+ +. ..+++||.+ -+-.+.++.... .+++.++++.
T Consensus 52 ~~Vl~G~~~~~~~~~~~-~~l~~Gd~~---~ip~~~~H~~~~--~~~~~~l~i~ 99 (107)
T 2i45_A 52 LFAVEGDMAVDFADGGS-MTIREGEMA---VVPKSVSHRPRS--ENGCSLVLIE 99 (107)
T ss_dssp EEESSSCEEEEETTSCE-EEECTTEEE---EECTTCCEEEEE--EEEEEEEEEE
T ss_pred EEEEeCEEEEEECCCcE-EEECCCCEE---EECCCCcEeeEe--CCCeEEEEEE
Confidence 67899999998877 54 579999875 223345555443 3455555544
No 68
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=82.52 E-value=3.7 Score=21.42 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=31.9
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
++|++|.+++...++. ..+++||.+ -+-.+.++... +.+++.++.+-..
T Consensus 62 ~~vl~G~~~~~i~~~~-~~l~~Gd~i---~i~~~~~H~~~--~~~~~~~~~i~~~ 110 (114)
T 2ozj_A 62 YLILQGEAVITFDDQK-IDLVPEDVL---MVPAHKIHAIA--GKGRFKMLQITLI 110 (114)
T ss_dssp EEEEEEEEEEEETTEE-EEECTTCEE---EECTTCCBEEE--EEEEEEEEEEEEC
T ss_pred EEEEeCEEEEEECCEE-EEecCCCEE---EECCCCcEEEE--eCCCcEEEEEEEc
Confidence 6899999999888764 469999874 22234555543 3456655555443
No 69
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=82.42 E-value=4.4 Score=23.30 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=20.7
Q ss_pred EEEEccEEEEEECCE---EEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRENK---YLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~---~v~~l~~G~~f 29 (66)
++|++|.+++...+. ....+++||.+
T Consensus 144 ~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~ 172 (198)
T 2bnm_A 144 LFVLEGEIHMKWGDKENPKEALLPTGASM 172 (198)
T ss_dssp EEEEESCEEEEESCTTSCEEEEECTTCEE
T ss_pred EEEEeeeEEEEECCcCCcccEEECCCCEE
Confidence 678999999988771 34589999986
No 70
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=81.77 E-value=6.3 Score=23.53 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=34.4
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEeec
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRT 59 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~~ 59 (66)
.+|++|.+++...++. ..+++||++ -+-.+.++. +.|.+++.++.+..+.
T Consensus 61 ~~Vl~G~~~~~i~~~~-~~l~~Gd~~---~~p~~~~H~--~~a~~~~~~l~i~~~~ 110 (227)
T 3rns_A 61 YYCFNGNGEIFIENNK-KTISNGDFL---EITANHNYS--IEARDNLKLIEIGEKI 110 (227)
T ss_dssp EEEEESEEEEEESSCE-EEEETTEEE---EECSSCCEE--EEESSSEEEEEEEECC
T ss_pred EEEEeCEEEEEECCEE-EEECCCCEE---EECCCCCEE--EEECCCcEEEEEEeec
Confidence 5789999999888765 578898864 233345554 5677887777665553
No 71
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=81.39 E-value=3.7 Score=20.56 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=20.1
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
++|++|.+.+..+++. ..+++||.+
T Consensus 53 ~~v~~G~~~~~~~~~~-~~l~~Gd~~ 77 (105)
T 1v70_A 53 YYALEGEVVVRVGEEE-ALLAPGMAA 77 (105)
T ss_dssp EEEEESCEEEEETTEE-EEECTTCEE
T ss_pred EEEEeCEEEEEECCEE-EEeCCCCEE
Confidence 5899999998887754 578999875
No 72
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=80.94 E-value=5.8 Score=22.54 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
++|++|.+++...++. ..+++||.+
T Consensus 69 ~~Vl~G~~~~~~~~~~-~~l~~GD~i 93 (163)
T 3i7d_A 69 VMVTEGALVLVDDQGE-HPMVPGDCA 93 (163)
T ss_dssp EEEEESCEEEEETTEE-EEECTTCEE
T ss_pred EEEEECEEEEEECCEE-EEeCCCCEE
Confidence 7899999999888764 579999875
No 73
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=80.77 E-value=6.1 Score=22.76 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=29.6
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
++|++|.+++..+++. ..+++||.| -+-.+.+...... ++++++++.
T Consensus 88 ~yVLeG~~~l~i~g~~-~~l~~GD~i---~iP~G~~h~~~n~--~~a~~l~V~ 134 (151)
T 4axo_A 88 DYVIDGTLDIIIDGRK-VSASSGELI---FIPKGSKIQFSVP--DYARFIYVT 134 (151)
T ss_dssp EEEEEEEEEEEETTEE-EEEETTCEE---EECTTCEEEEEEE--EEEEEEEEE
T ss_pred EEEEEeEEEEEECCEE-EEEcCCCEE---EECCCCEEEEEeC--CCEEEEEEE
Confidence 6789999999987754 579999975 2223344443333 555555443
No 74
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=80.11 E-value=5.4 Score=21.69 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=20.1
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
++|++|.+.+..+++. ..+++||.+
T Consensus 82 ~~Vl~G~~~~~i~~~~-~~l~~Gd~i 106 (133)
T 1o4t_A 82 YYILLGEGVFHDNGKD-VPIKAGDVC 106 (133)
T ss_dssp EEEEESEEEEEETTEE-EEEETTEEE
T ss_pred EEEEeCEEEEEECCEE-EEeCCCcEE
Confidence 6899999999888764 468898875
No 75
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=79.14 E-value=5 Score=20.78 Aligned_cols=50 Identities=8% Similarity=0.061 Sum_probs=32.5
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEeec
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRT 59 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~~ 59 (66)
++|++|.+.+..+++. ..+.+|+.+= +-.+.++. ..+.++++++.+-+..
T Consensus 64 ~~vl~G~~~~~~~~~~-~~l~~Gd~~~---ip~~~~H~--~~~~~~~~~~~v~~~~ 113 (115)
T 1yhf_A 64 VTILSGLAEITIDQET-YRVAEGQTIV---MPAGIPHA--LYAVEAFQMLLVVVKP 113 (115)
T ss_dssp EEEEESEEEEEETTEE-EEEETTCEEE---ECTTSCEE--EEESSCEEEEEEEECS
T ss_pred EEEEeCEEEEEECCEE-EEECCCCEEE---ECCCCCEE--EEECCCceEEEEEEcc
Confidence 6789999999887765 4688998752 22334444 4455676666655443
No 76
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=78.36 E-value=5.1 Score=20.43 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=29.1
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSW 55 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l 55 (66)
++|++|.+++...++. ..+++||.+= +-.+.++.......+++.++.+
T Consensus 48 ~~vl~G~~~~~~~~~~-~~l~~Gd~~~---i~~~~~H~~~~~~~~~~~~~~v 95 (113)
T 2gu9_A 48 LFVVDGAGEAIVDGHT-QALQAGSLIA---IERGQAHEIRNTGDTPLKTVNF 95 (113)
T ss_dssp EEEEECCEEEEETTEE-EEECTTEEEE---ECTTCCEEEECCSSSCEEEEEE
T ss_pred EEEEeCEEEEEECCEE-EEeCCCCEEE---ECCCCcEEeEcCCCCCEEEEEE
Confidence 6789999999887764 4689998752 2233445433332334444444
No 77
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=78.23 E-value=6.1 Score=23.07 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=29.5
Q ss_pred eEEEEccEEEEEECCE----EEEEeCCCCEEeccccccCCceeEEEEEccceEEEEE
Q psy14742 3 DRILSKGRVEVSRENK----YLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSW 55 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~----~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l 55 (66)
-++|++|...+...+. ....+++||.+ .+-.+.++.......+++.++.+
T Consensus 99 ~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v---~ip~g~~H~~~N~g~~~~~~l~v 152 (190)
T 1x82_A 99 VYVALKGKGGMLLQTPEGDAKWISMEPGTVV---YVPPYWAHRTVNIGDEPFIFLAI 152 (190)
T ss_dssp EEEEEESCEEEEEECTTCCEEEEEECTTCEE---EECTTCEEEEEECSSSCEEEEEE
T ss_pred EEEEEcCEEEEEEcCcCCcEEEEEECCCcEE---EECCCCeEEEEECCcccEEEEEE
Confidence 3789999999876542 24679999975 22234455433333344444433
No 78
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=77.63 E-value=2.6 Score=26.18 Aligned_cols=27 Identities=33% Similarity=0.246 Sum_probs=21.1
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEe
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFG 30 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fG 30 (66)
+.|++|++.+...+..-..+++||.|-
T Consensus 190 ~~ILeG~v~lt~~~G~~~~~~aGD~~~ 216 (238)
T 3myx_A 190 MNLIEGRVVLSLENGSSLTVNTGDTVF 216 (238)
T ss_dssp EEEEECCEEEEETTSCEEEECTTCEEE
T ss_pred EEEEEeEEEEEeCCCCEEEECCCCEEE
Confidence 578999999988754346799999763
No 79
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=77.51 E-value=9.5 Score=23.09 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=30.8
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
.+|++|++++...++. ..|++||.+= +-.+.++..... ++++++++.
T Consensus 72 ~~Vl~G~~~~~~~~~~-~~l~~Gd~~~---~p~~~~H~~~n~--~~~~~l~v~ 118 (246)
T 1sfn_A 72 AFVLSGEVDVAVGGET-RTLREYDYVY---LPAGEKHMLTAK--TDARVSVFE 118 (246)
T ss_dssp EEEEEEEEEEECSSCE-EEECTTEEEE---ECTTCCCEEEEE--EEEEEEEEE
T ss_pred EEEEECEEEEEECCEE-EEECCCCEEE---ECCCCCEEEEeC--CCEEEEEEE
Confidence 4689999999887764 5799998753 333455554433 555555554
No 80
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=77.46 E-value=6.2 Score=21.93 Aligned_cols=51 Identities=18% Similarity=0.022 Sum_probs=30.6
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
-++|++|.+.+...++....+.+||.+= +-.+.++.......+++.++.+.
T Consensus 71 ~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~l~v~ 121 (147)
T 2f4p_A 71 ILIVTRGKGFYQERGKPARILKKGDVVE---IPPNVVHWHGAAPDEELVHIGIS 121 (147)
T ss_dssp EEEEEEEEEEEEETTSCCEEEETTCEEE---ECTTCCEEEEEBTTBCEEEEEEE
T ss_pred EEEEEeCEEEEEECCEEEEEECCCCEEE---ECCCCcEEeEeCCCCCEEEEEEE
Confidence 3678999999988765434688998752 22345554444333444444443
No 81
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=76.90 E-value=6.5 Score=20.84 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=31.4
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
+++++|.+++..+++. ..+++||.+= +-.+.++. +.+.+++.++++-
T Consensus 60 ~~Vl~G~~~~~i~~~~-~~l~~Gd~i~---ip~~~~H~--~~~~~~~~~~~~~ 106 (114)
T 3fjs_A 60 IQCLEGEVEIGVDGAQ-RRLHQGDLLY---LGAGAAHD--VNAITNTSLLVTV 106 (114)
T ss_dssp EEEEESCEEEEETTEE-EEECTTEEEE---ECTTCCEE--EEESSSEEEEEEE
T ss_pred EEEEECEEEEEECCEE-EEECCCCEEE---ECCCCcEE--EEeCCCcEEEEEE
Confidence 6899999999888774 5789998742 22334453 5566776655543
No 82
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=76.87 E-value=5.7 Score=24.43 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=30.0
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
.+|++|++++...++. ..|++||.+= +-.+.++.......++++++++.
T Consensus 88 ~~Vl~G~l~~~~~~~~-~~L~~GD~~~---~~~~~~H~~~N~~~~~~~~l~v~ 136 (274)
T 1sef_A 88 VYVIDGRLRVSDGQET-HELEAGGYAY---FTPEMKMYLANAQEADTEVFLYK 136 (274)
T ss_dssp EEEEESEEEEECSSCE-EEEETTEEEE---ECTTSCCEEEESSSSCEEEEEEE
T ss_pred EEEEEeEEEEEECCEE-EEECCCCEEE---ECCCCCEEEEeCCCCCEEEEEEE
Confidence 5789999999887754 4799998753 22334444433333445554443
No 83
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=76.84 E-value=5.7 Score=21.27 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=28.4
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
++|++|.+++..+++. ..+.+||.+= +-.+.++.......+++.++.+.
T Consensus 72 ~~Vl~G~~~~~i~~~~-~~l~~Gd~i~---ip~g~~H~~~~~~~~~~~~l~v~ 120 (126)
T 1vj2_A 72 IFVLKGKLTVLKEQGE-ETVEEGFYIF---VEPNEIHGFRNDTDSEVEFLCLI 120 (126)
T ss_dssp EEEEESEEEEECSSCE-EEEETTEEEE---ECTTCCEEEECCSSSCEEEEEEE
T ss_pred EEEEEeEEEEEECCEE-EEECCCCEEE---ECCCCcEEeEeCCCCCEEEEEEE
Confidence 6789999988777654 4688888652 22234554433333344444443
No 84
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=76.78 E-value=4 Score=21.96 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=29.5
Q ss_pred eEEEEccEEEEEECC-EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEE
Q psy14742 3 DRILSKGRVEVSREN-KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSW 55 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~-~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l 55 (66)
-++|++|.+.+...+ +. ..+++||.+ -+-.+.++....... ++.++.+
T Consensus 67 ~~~vl~G~~~~~~~~~~~-~~l~~Gd~~---~ip~g~~H~~~~~~~-~~~~l~~ 115 (134)
T 2o8q_A 67 LFYVLRGWVEFEYEDIGA-VMLEAGGSA---FQPPGVRHRELRHSD-DLEVLEI 115 (134)
T ss_dssp EEEEEESEEEEEETTTEE-EEEETTCEE---ECCTTCCEEEEEECT-TCEEEEE
T ss_pred EEEEEeCEEEEEECCcEE-EEecCCCEE---EECCCCcEEeEeCCC-CeEEEEE
Confidence 368999999998887 54 579999875 222345555443322 4444433
No 85
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=76.04 E-value=4.7 Score=21.30 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
++|++|.+++...++. ..+++|+.+
T Consensus 65 ~~vl~G~~~~~~~~~~-~~l~~Gd~~ 89 (126)
T 4e2g_A 65 GVMLEGTLELTIGEET-RVLRPGMAY 89 (126)
T ss_dssp EEEEEECEEEEETTEE-EEECTTEEE
T ss_pred EEEEEeEEEEEECCEE-EEeCCCCEE
Confidence 6889999999888765 578999875
No 86
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=76.00 E-value=11 Score=23.09 Aligned_cols=50 Identities=12% Similarity=0.007 Sum_probs=33.1
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEc-cceEEEEEE
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVH-WTLNLKSWG 56 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~-~~~~v~~l~ 56 (66)
-++|++|+.++..+++. ..+++||.+ -+-.+.++....... +++..+++.
T Consensus 206 ~~yVl~G~~~~~i~~~~-~~l~~GD~i---~i~~~~~H~~~n~~~~~~~~~l~~~ 256 (274)
T 1sef_A 206 GAYLISGQGMYNLDNEW-YPVEKGDYI---FMSAYVPQAAYAVGREEPLMYVYSK 256 (274)
T ss_dssp EEEEEECEEEEEETTEE-EEEETTCEE---EECTTCCEEEEEECSSSCEEEEEEE
T ss_pred EEEEEeCEEEEEECCEE-EEECCCCEE---EECCCCCEEEEeCCCCCCEEEEEEE
Confidence 36899999999888765 478999975 222345665544444 555555553
No 87
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=75.21 E-value=8.6 Score=23.86 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=30.6
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
++|++|++++..+++. ..+++||++= +-.+.++.......++++++.+.
T Consensus 94 ~~Vl~G~l~v~v~g~~-~~L~~GD~i~---ip~~~~H~~~N~g~~~~~~l~v~ 142 (278)
T 1sq4_A 94 LFVVEGELSLTLQGQV-HAMQPGGYAF---IPPGADYKVRNTTGQHTRFHWIR 142 (278)
T ss_dssp EEEEESCEEEEESSCE-EEECTTEEEE---ECTTCCEEEECCSSSCEEEEEEE
T ss_pred EEEEeCEEEEEECCEE-EEECCCCEEE---ECCCCcEEEEECCCCCEEEEEEE
Confidence 6799999999888764 4799998742 22344554433333455554443
No 88
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=74.65 E-value=9.5 Score=21.65 Aligned_cols=44 Identities=14% Similarity=0.044 Sum_probs=27.8
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLN 51 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~ 51 (66)
++|++|.+++..+++. ..+++||.+ -+-.+.++.......+++.
T Consensus 68 ~~Vl~G~~~v~v~g~~-~~l~~Gd~i---~ip~~~~H~~~n~g~~~~~ 111 (156)
T 3kgz_A 68 VMIHRGHGQCLVGETI-SDVAQGDLV---FIPPMTWHQFRANRGDCLG 111 (156)
T ss_dssp EEEEEEEEEEEETTEE-EEEETTCEE---EECTTCCEEEECCSSSCEE
T ss_pred EEEEeCEEEEEECCEE-EEeCCCCEE---EECCCCcEEeEeCCCCCEE
Confidence 5799999999888764 468898875 2223455554433334433
No 89
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=74.60 E-value=6.4 Score=24.22 Aligned_cols=56 Identities=21% Similarity=0.153 Sum_probs=34.6
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceE-EEEEEeecCCC
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLN-LKSWGSRTSGD 62 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~-v~~l~~~~~~~ 62 (66)
-|+|++|.++....+.....+++|+.+ -.-.+.++... ...++.. +++|.-+.+.|
T Consensus 155 iy~VLsG~~e~~v~~g~~~~l~pGd~v---~ipsgv~Ha~r-t~dePllalwvW~G~~~~~ 211 (217)
T 4b29_A 155 LYSVVSGRALFHLRNAPDLMLEPGQTR---FHPANAPHAMT-TLTDPILTLVLWRGAGLGD 211 (217)
T ss_dssp EEEEEEECEEEEETTSCCEEECTTCEE---EECTTCCEEEE-CCSSCEEEEEEEESTTTTC
T ss_pred EEEEEeCCEEEEECCCCEEecCCCCEE---EcCCCCceeEE-ECCccEEEEEEEeCCCCCC
Confidence 589999999998885555679999874 22234555554 2334432 45565544443
No 90
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=74.21 E-value=7.8 Score=20.50 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=26.2
Q ss_pred EEEEccEEEEEECCEEE-EEeCCCCEEeccccccCCceeEEEEE
Q psy14742 4 RILSKGRVEVSRENKYL-STLAPGKVFGELAILYNCKRTATIKV 46 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v-~~l~~G~~fGe~~l~~~~~r~~tv~A 46 (66)
++|++|.+++...++.. ..+++||.+= +-.+.++......
T Consensus 57 ~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~---ipa~~~H~~~n~~ 97 (112)
T 2opk_A 57 VMVVSGSAGIECEGDTAPRVMRPGDWLH---VPAHCRHRVAWTD 97 (112)
T ss_dssp EEEEESCEEEEETTCSSCEEECTTEEEE---ECTTCCEEEEEEC
T ss_pred EEEEeCeEEEEECCEEEEEEECCCCEEE---ECCCCcEEEEeCC
Confidence 68899999998876541 4699998753 2234555544333
No 91
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=73.16 E-value=13 Score=22.39 Aligned_cols=47 Identities=11% Similarity=-0.023 Sum_probs=29.7
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKS 54 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~ 54 (66)
++|++|.+++..++... .+++||.+= +-.+.++.......+++.++.
T Consensus 170 ~~Vl~G~~~~~i~~~~~-~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~l~ 216 (243)
T 3h7j_A 170 GICIGGGYDMTVEGCTV-EMKFGTAYF---CEPREDHGAINRSEKESKSIN 216 (243)
T ss_dssp EEECSSCEEEEETTEEE-EECTTCEEE---ECTTCCEEEEECSSSCEEEEE
T ss_pred EEEEECEEEEEECCEEE-EECCCCEEE---ECCCCcEEeEeCCCCCEEEEE
Confidence 67899999998888654 599999753 223455554433334444443
No 92
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=72.47 E-value=7.4 Score=19.47 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=29.0
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
+++++|.+.+...++. ..+++|+.+ -+-.+.++.... .+++.++++.
T Consensus 54 ~~v~~G~~~~~~~~~~-~~l~~Gd~~---~ip~~~~H~~~~--~~~~~~l~i~ 100 (102)
T 3d82_A 54 FIVMEGTLQIAFRDQN-ITLQAGEMY---VIPKGVEHKPMA--KEECKIMIIE 100 (102)
T ss_dssp EEEEESEEEEECSSCE-EEEETTEEE---EECTTCCBEEEE--EEEEEEEEEE
T ss_pred EEEEeCEEEEEECCEE-EEEcCCCEE---EECCCCeEeeEc--CCCCEEEEEE
Confidence 6789999998776653 457888864 222334554433 3566666554
No 93
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=70.46 E-value=13 Score=21.35 Aligned_cols=47 Identities=17% Similarity=0.071 Sum_probs=29.0
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKS 54 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~ 54 (66)
++|++|..++..+++. ..+++||.+ -+-.+.++.......+++.+++
T Consensus 77 ~~Vl~G~~~~~v~g~~-~~l~~GD~i---~ip~g~~H~~~n~~~~~~~~l~ 123 (166)
T 3jzv_A 77 VMILKGRGHAMVGRAV-SAVAPYDLV---TIPGWSWHQFRAPADEALGFLC 123 (166)
T ss_dssp EEEEEECEEEEETTEE-EEECTTCEE---EECTTCCEEEECCTTSCEEEEE
T ss_pred EEEEeCEEEEEECCEE-EEeCCCCEE---EECCCCcEEeEeCCCCCEEEEE
Confidence 5789999999888764 578999875 2223455544333334444333
No 94
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=67.63 E-value=21 Score=22.63 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=38.7
Q ss_pred eEEEEccEEEEEECCEEEEEe-CCCCEEecc---ccccCCceeEEEEEccceEEEEEEeecC
Q psy14742 3 DRILSKGRVEVSRENKYLSTL-APGKVFGEL---AILYNCKRTATIKVHWTLNLKSWGSRTS 60 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l-~~G~~fGe~---~l~~~~~r~~tv~A~~~~~v~~l~~~~~ 60 (66)
+.|.+.|.+.+..+++....+ +.-++|-+. ++--..-..+++.|.+++++.+.+-...
T Consensus 52 ~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~~v~sAp~~ 113 (270)
T 2qjv_A 52 CLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLELAVCSAPGF 113 (270)
T ss_dssp EEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEEEEEEEECC
T ss_pred EEEEecceEEEEECCEEEeccccccccccCCCCcEEEECCCCEEEEEecCCceEEEEeeecC
Confidence 467888999998888765553 345666654 2222222368899999988888775543
No 95
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=66.94 E-value=12 Score=19.68 Aligned_cols=52 Identities=8% Similarity=0.041 Sum_probs=31.2
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEeec
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRT 59 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~~ 59 (66)
++|++|...+..+++. ..+++|+.+= +-.+.++.......+++..+.+.++.
T Consensus 58 ~~v~~G~~~~~i~~~~-~~l~~Gd~~~---i~~~~~H~~~~~~~~~~~~~~i~f~~ 109 (128)
T 4i4a_A 58 FIVIQGNAIIRINDED-FPVTKGDLII---IPLDSEHHVINNNQEDFHFYTIWWDK 109 (128)
T ss_dssp EEEEESEEEEEETTEE-EEEETTCEEE---ECTTCCEEEEECSSSCEEEEEEEECH
T ss_pred EEEEeCEEEEEECCEE-EEECCCcEEE---ECCCCcEEeEeCCCCCEEEEEEEECH
Confidence 5789999999888764 4688888642 22234454333333445555555443
No 96
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=66.78 E-value=14 Score=20.31 Aligned_cols=49 Identities=14% Similarity=0.003 Sum_probs=28.9
Q ss_pred EEEEccEEEEEECCEE-----EEEeCCCCEEeccccccCCceeEEEEEccceEEEEE
Q psy14742 4 RILSKGRVEVSRENKY-----LSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSW 55 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~-----v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l 55 (66)
++|++|.+.+...+.. -..+.+||.+ -+-.+.++.......+++.++.+
T Consensus 68 ~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i---~ip~g~~H~~~n~~~~~~~~l~i 121 (148)
T 2oa2_A 68 LRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI---LIPAGTWHNVRNTGNRPLKLYSI 121 (148)
T ss_dssp EEEEESEEEEEEESBTTBCCEEEEEETTCEE---EECTTCEEEEEECSSSCEEEEEE
T ss_pred EEEEeCEEEEEECCccccceeeEEECCCCEE---EECCCCcEEEEECCCCCEEEEEE
Confidence 5799999999776543 2578999864 22234555443333334444444
No 97
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=65.72 E-value=13 Score=19.88 Aligned_cols=25 Identities=12% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEEccEEEEE--ECCEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVS--RENKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~--~~~~~v~~l~~G~~f 29 (66)
++|++|.+++. ..++. ..+++||.+
T Consensus 63 ~~vl~G~~~~~~~~~~~~-~~l~~Gd~~ 89 (145)
T 3ht1_A 63 IYVLEGSMGLVLPDQGRT-EEVGPGEAI 89 (145)
T ss_dssp EEEEEECEEEEEGGGTEE-EEECTTCEE
T ss_pred EEEEEeEEEEEEeECCEE-EEECCCCEE
Confidence 46899999988 66643 579999875
No 98
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=64.32 E-value=4 Score=20.85 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=27.5
Q ss_pred EEEEccEEEEEEC-CEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEE
Q psy14742 4 RILSKGRVEVSRE-NKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKS 54 (66)
Q Consensus 4 ~iI~~G~v~v~~~-~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~ 54 (66)
+++++|.+++... ++. ..+++||.+= +-.+.++. ..+.+++.++.
T Consensus 59 ~~vl~G~~~~~~~~~~~-~~l~~Gd~~~---ip~~~~H~--~~~~~~~~~l~ 104 (110)
T 2q30_A 59 IVVLEGEGEFVGDGDAV-IPAPRGAVLV---APISTPHG--VRAVTDMKVLV 104 (110)
T ss_dssp EEEEESCEEEECGGGCE-EEECTTEEEE---EETTSCEE--EEESSSEEEEE
T ss_pred EEEEeCEEEEEeCCCEE-EEECCCCEEE---eCCCCcEE--EEEcCCcEEEE
Confidence 5899999998776 443 4689998642 22334443 34455554433
No 99
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=62.64 E-value=8.6 Score=22.18 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=19.6
Q ss_pred EEEEccEEEEEEC---CEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRE---NKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~---~~~v~~l~~G~~f 29 (66)
++|++|++++... +.....+++||++
T Consensus 65 ~yVl~G~~~v~v~~~~~~~~~~l~~GDv~ 93 (178)
T 1dgw_A 65 VLVLEGQAILVLVNPDGRDTYKLDQGDAI 93 (178)
T ss_dssp EEEEESEEEEEEEETTEEEEEEEETTEEE
T ss_pred EEEEeEEEEEEEEeCCCcEEEEECCCCEE
Confidence 6789999888653 2456689999975
No 100
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=62.03 E-value=6.5 Score=25.21 Aligned_cols=49 Identities=18% Similarity=0.019 Sum_probs=31.4
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
++|++|.+++..+++.-..+++||.| -+-.+.++. +.+.++. ..+|-+.
T Consensus 276 ~~vleG~~~i~i~g~~~~~l~~Gd~~---~iPag~~h~--~~~~~~~-~~~l~~~ 324 (350)
T 1juh_A 276 FQVQEGRVVVQIGDYAATELGSGDVA---FIPGGVEFK--YYSEAYF-SKVLFVS 324 (350)
T ss_dssp EEEEESCEEEEETTSCCEEECTTCEE---EECTTCCEE--EEESSSS-EEEEEEE
T ss_pred EEEEeeEEEEEECCeEEEEeCCCCEE---EECCCCCEE--EEecCCe-EEEEEEe
Confidence 78999999999988334589999874 333445554 4455542 3444333
No 101
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=60.44 E-value=21 Score=20.28 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.6
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
++|++|.+++...++. ..+++||.+
T Consensus 130 ~~Vl~G~~~~~~~~~~-~~l~~GD~i 154 (192)
T 1y9q_A 130 IHVLEGIMKVFFDEQW-HELQQGEHI 154 (192)
T ss_dssp EEEEESCEEEEETTEE-EEECTTCEE
T ss_pred EEEEEeEEEEEECCEE-EEeCCCCEE
Confidence 6789999999887765 479999975
No 102
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=60.08 E-value=16 Score=18.76 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=29.4
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSW 55 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l 55 (66)
++|++|.+++..+++. ..+++||.+ -+-.+.++. ..+.+++.++.+
T Consensus 58 ~~vl~G~~~~~~~~~~-~~l~~Gd~~---~ip~~~~H~--~~~~~~~~~l~v 103 (116)
T 2pfw_A 58 SYVVEGEFHVNVDGVI-KVLTAGDSF---FVPPHVDHG--AVCPTGGILIDT 103 (116)
T ss_dssp EEEEEECEEEEETTEE-EEECTTCEE---EECTTCCEE--EEESSCEEEEEE
T ss_pred EEEEeeEEEEEECCEE-EEeCCCCEE---EECcCCcee--eEeCCCcEEEEE
Confidence 6789999998887764 579999874 222334444 344556555444
No 103
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=59.46 E-value=22 Score=20.17 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=31.9
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEE-ccceEEEEEE
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKV-HWTLNLKSWG 56 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A-~~~~~v~~l~ 56 (66)
-++|++|.+++..+++. ..+++||.+ -+-.+.++...... .+++.++++-
T Consensus 79 ~~~Vl~G~~~~~i~~~~-~~l~~Gd~i---~ip~~~~H~~~n~~~~~~~~~l~i~ 129 (167)
T 3ibm_A 79 VVMVVRGHAEVVLDDRV-EPLTPLDCV---YIAPHAWHQIHATGANEPLGFLCIV 129 (167)
T ss_dssp EEEEEESEEEEEETTEE-EEECTTCEE---EECTTCCEEEEEESSSCCEEEEEEE
T ss_pred EEEEEeCEEEEEECCEE-EEECCCCEE---EECCCCcEEEEeCCCCCCEEEEEEE
Confidence 36899999999888764 578999875 23334556544443 4454444443
No 104
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=58.23 E-value=30 Score=21.30 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=21.3
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
-++|++|++++..+++. ..+++||+|
T Consensus 242 ~~~vl~G~~~~~i~~~~-~~l~~GD~~ 267 (337)
T 1y3t_A 242 TFYCLEGQMTMWTDGQE-IQLNPGDFL 267 (337)
T ss_dssp EEEEEESCEEEEETTEE-EEECTTCEE
T ss_pred EEEEEeCEEEEEECCEE-EEECCCCEE
Confidence 36899999999888765 579999976
No 105
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=53.20 E-value=25 Score=18.91 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=18.8
Q ss_pred EEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
.++.+|...+..+++. -.+++|+.|
T Consensus 42 ~~v~~G~~~~~i~~~~-~~l~~Gd~~ 66 (164)
T 2arc_A 42 NLTIRGQGVVKNQGRE-FVCRPGDIL 66 (164)
T ss_dssp EEEEEECEEEEETTEE-EEECTTCEE
T ss_pred EEEEEeEEEEEECCEE-EEecCCeEE
Confidence 4678999888887765 367888764
No 106
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=52.86 E-value=14 Score=21.52 Aligned_cols=26 Identities=4% Similarity=-0.028 Sum_probs=20.8
Q ss_pred eEEEEc--cEEEEEECCEEEEEeCCCCEE
Q psy14742 3 DRILSK--GRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 3 ~~iI~~--G~v~v~~~~~~v~~l~~G~~f 29 (66)
-|+|++ |..++..+++. ..+++||.+
T Consensus 69 ~~yVLe~~G~g~v~idge~-~~l~~GD~v 96 (157)
T 4h7l_A 69 IYVVLDHAAHATIELNGQS-YPLTKLLAI 96 (157)
T ss_dssp EEEEEEECTTCEEEETTEE-EECCTTEEE
T ss_pred EEEEEecCcEEEEEECCEE-EEeCCCCEE
Confidence 378899 99999888865 468998864
No 107
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=52.61 E-value=22 Score=22.32 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=21.0
Q ss_pred eEEEEccEEEEEE---CCE-EEEEeCCCCEE
Q psy14742 3 DRILSKGRVEVSR---ENK-YLSTLAPGKVF 29 (66)
Q Consensus 3 ~~iI~~G~v~v~~---~~~-~v~~l~~G~~f 29 (66)
-++|++|.+.+.. +++ ....+++||+|
T Consensus 258 ~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~ 288 (361)
T 2vqa_A 258 WQYVLDGEMDLTVFASEGKASVSRLQQGDVG 288 (361)
T ss_dssp EEEEEESCEEEEEECSTTCEEEEEECTTCEE
T ss_pred EEEEEeCEEEEEEEcCCCcEEEEEECCCCEE
Confidence 4689999999876 454 35689999986
No 108
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=50.15 E-value=27 Score=23.10 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=20.5
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
-|+|++|+..+..+++. ..+++||+|
T Consensus 317 v~~VleG~G~~~V~ge~-~~~~~GD~~ 342 (394)
T 3bu7_A 317 IYNVAKGQGYSIVGGKR-FDWSEHDIF 342 (394)
T ss_dssp EEEEEECCEEEEETTEE-EEECTTCEE
T ss_pred EEEEEeCeEEEEECCEE-EEEeCCCEE
Confidence 37899999877777654 578999986
No 109
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=48.79 E-value=11 Score=23.07 Aligned_cols=47 Identities=13% Similarity=0.038 Sum_probs=27.8
Q ss_pred eEEEEccEEEEEE--------CCE-----------EEEEeCCCCEEeccccccCCceeEEEEEccceEE
Q psy14742 3 DRILSKGRVEVSR--------ENK-----------YLSTLAPGKVFGELAILYNCKRTATIKVHWTLNL 52 (66)
Q Consensus 3 ~~iI~~G~v~v~~--------~~~-----------~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v 52 (66)
-++|++|.+++.. .+. ....+++||++= +-.+.++.......+++++
T Consensus 67 ~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~---iP~g~~H~~~N~~~~~~~~ 132 (239)
T 2xlg_A 67 WFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIY---SPNHYMHGFVNPTDKTLPI 132 (239)
T ss_dssp EEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEE---ECTTEEEEEECCSSSCEEE
T ss_pred EEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEE---ECCCCCEEEEeCCCCCEEE
Confidence 3688999999877 444 156899998742 2233444433333344555
No 110
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=47.81 E-value=42 Score=19.93 Aligned_cols=53 Identities=8% Similarity=0.002 Sum_probs=33.9
Q ss_pred EEEEccEEEEEEC--C-EEEEEeCCCCEEeccccccCCceeEEEEEcc-ceEEEEEEeecCC
Q psy14742 4 RILSKGRVEVSRE--N-KYLSTLAPGKVFGELAILYNCKRTATIKVHW-TLNLKSWGSRTSG 61 (66)
Q Consensus 4 ~iI~~G~v~v~~~--~-~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~-~~~v~~l~~~~~~ 61 (66)
+++++|.+.+... + ..-..+++||.|= +-.+.+++. ++.+ ++.++++...+..
T Consensus 59 FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~---lP~gvpH~P--~r~~~e~~~lviE~~r~~ 115 (174)
T 1yfu_A 59 FYQLRGNAYLNLWVDGRRERADLKEGDIFL---LPPHVRHSP--QRPEAGSACLVIERQRPA 115 (174)
T ss_dssp EEEEESCEEEEEEETTEEEEEEECTTCEEE---ECTTCCEEE--EBCCTTCEEEEEEECCCT
T ss_pred EEEEeeEEEEEEEcCCceeeEEECCCCEEE---eCCCCCcCc--cccCCCCEEEEEEeCCCC
Confidence 6889999988543 3 2345799998862 223344433 2344 6788888877654
No 111
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=47.61 E-value=34 Score=18.87 Aligned_cols=50 Identities=14% Similarity=-0.013 Sum_probs=29.6
Q ss_pred eEEEEccEEEEEECCE--------EEEEeCCCCEEeccccccCCceeEEEEE-ccceEEEEE
Q psy14742 3 DRILSKGRVEVSRENK--------YLSTLAPGKVFGELAILYNCKRTATIKV-HWTLNLKSW 55 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~--------~v~~l~~G~~fGe~~l~~~~~r~~tv~A-~~~~~v~~l 55 (66)
-++|++|...+...+. ....+++||++ -+-.+.++...... .+++.++.+
T Consensus 64 ~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i---~ip~~~~H~~~n~~~~~~~~~l~i 122 (163)
T 1lr5_A 64 VFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF---SIPVNDPHQVWNSDEHEDLQVLVI 122 (163)
T ss_dssp EEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE---EECTTCCEEEECCCSSSCEEEEEE
T ss_pred EEEEEeCEEEEEECCccccccCccEEEEeCCCCEE---EECCCCcEEeEeCCCCCCEEEEEE
Confidence 3689999999987761 34579999875 22234555443332 334444443
No 112
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=46.92 E-value=48 Score=20.40 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=21.3
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
.++|++|+..+..+++. ..+++||++
T Consensus 215 ~~~il~G~~~~~~~~~~-~~v~~GD~~ 240 (278)
T 1sq4_A 215 GLYVLEGKAVYRLNQDW-VEVEAGDFM 240 (278)
T ss_dssp EEEEEECEEEEEETTEE-EEEETTCEE
T ss_pred EEEEEeCEEEEEECCEE-EEeCCCCEE
Confidence 58999999998887765 578999975
No 113
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=45.94 E-value=51 Score=20.40 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=30.2
Q ss_pred EEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 5 iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
++.+|.+++--.+..-..+.+|+.. .+.+ ....++.|.++++++++++.
T Consensus 207 ~v~~G~v~v~g~~~~~~~l~~gd~~----~l~~-~~~l~l~a~~~a~~LL~dl~ 255 (256)
T 2vec_A 207 QSIHGKFHALTHHEEKAALTCGDGA----FIRD-EANITLVADSPLRALLIDLP 255 (256)
T ss_dssp EEEESCEEEEETTEEEEEECTTCEE----EEES-CSEEEEEESSSEEEEEEEEC
T ss_pred EEEECEEEECCccccceEECCCCEE----EECC-CCeEEEEeCCCCEEEEEEec
Confidence 3567877764322112347777743 2332 23567888889999999875
No 114
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=45.36 E-value=24 Score=20.24 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=32.0
Q ss_pred eEEEEccEEEEEECC-------EEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEee
Q psy14742 3 DRILSKGRVEVSREN-------KYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSR 58 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~-------~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~ 58 (66)
-|++++|++.+.-.+ .....++||++| .+-....- +-.|.++|.++++...
T Consensus 53 ~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~y----vVPkGveH-~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 53 QFILSAGKAILITAEKENDKFNIELTLMEKGKVY----NVPAECWF-YSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEEEEESCEEEEEEEEETTEEEEEEEECCTTCCE----EECTTCEE-EEEECTTCEEEEEEES
T ss_pred EEEEEecEEEEEEecCcCCCCccceEEecCCCEE----EeCCCccC-cccCCCceEEEEEEeC
Confidence 489999999985431 224578998754 33222221 2345678888888754
No 115
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=43.38 E-value=33 Score=19.90 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=19.2
Q ss_pred EEEEccEEEEEEC------CE-EEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRE------NK-YLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~------~~-~v~~l~~G~~f 29 (66)
++|++|.+++... ++ ....+++||+|
T Consensus 97 ~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~ 129 (201)
T 1fi2_A 97 GMVMKGELLVGILGSLDSGNKLYSRVVRAGETF 129 (201)
T ss_dssp EEEEESEEEEEEECCGGGTTCEEEEEEETTCEE
T ss_pred EEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEE
Confidence 6789999988653 33 25689999976
No 116
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=43.06 E-value=39 Score=21.66 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=21.2
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEE
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVF 29 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~f 29 (66)
-|+|++|+.++..+++. ..+++||+|
T Consensus 291 v~~v~~G~g~~~v~~~~-~~~~~GD~~ 316 (354)
T 2d40_A 291 IYHVVEGSGQVIIGNET-FSFSAKDIF 316 (354)
T ss_dssp EEEEEEEEEEEEETTEE-EEEETTCEE
T ss_pred EEEEEeCeEEEEECCEE-EEEcCCCEE
Confidence 47899999999887754 578999986
No 117
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=39.80 E-value=59 Score=19.35 Aligned_cols=53 Identities=11% Similarity=-0.028 Sum_probs=33.8
Q ss_pred EEEEccEEEEEEC--C----E-EEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEeecCC
Q psy14742 4 RILSKGRVEVSRE--N----K-YLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRTSG 61 (66)
Q Consensus 4 ~iI~~G~v~v~~~--~----~-~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~~~~ 61 (66)
+++++|.+.+... + + .--.+++||.|= +-.+.+++-. +..++..+++...+..
T Consensus 58 Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfl---lP~gvpHsP~--r~~e~v~lviErkR~~ 117 (176)
T 1zvf_A 58 FYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYL---LPGNVPHSPV--RFADTVGIVVEQDRPG 117 (176)
T ss_dssp EEEEESCEEEEEEECSSSSCEEEEEEECTTEEEE---ECTTCCEEEE--ECTTCEEEEEEECCCS
T ss_pred EEEEeCEEEEEEEcCCCcccceeeEEECCCCEEE---cCCCCCcCCc--ccCCcEEEEEEecCCC
Confidence 6889999888543 3 1 345799988762 2233444332 2467788888877764
No 118
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=39.64 E-value=47 Score=21.93 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=19.7
Q ss_pred EEEEccEEEEEE---CCEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSR---ENKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~---~~~~v~~l~~G~~f 29 (66)
++|++|+..+.. .+.....+++||++
T Consensus 73 ~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 101 (416)
T 1uij_A 73 LFVLSGRAILTLVNNDDRDSYNLHPGDAQ 101 (416)
T ss_dssp EEEEESCEEEEEECSSCEEEEEECTTEEE
T ss_pred EEEEeeEEEEEEEECCCCeEEEecCCCEE
Confidence 688999988865 23456789999986
No 119
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=38.98 E-value=37 Score=21.57 Aligned_cols=37 Identities=8% Similarity=0.193 Sum_probs=24.0
Q ss_pred EEEEccEEEEEE---CCEE-EEEeCCCCEEeccccccCCceeEE
Q psy14742 4 RILSKGRVEVSR---ENKY-LSTLAPGKVFGELAILYNCKRTAT 43 (66)
Q Consensus 4 ~iI~~G~v~v~~---~~~~-v~~l~~G~~fGe~~l~~~~~r~~t 43 (66)
++|++|++++.. +++. ...+++||++ -+-.+.++...
T Consensus 103 ~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~---~ip~g~~H~~~ 143 (385)
T 1j58_A 103 AYMIYGSARVTIVDEKGRSFIDDVGEGDLW---YFPSGLPHSIQ 143 (385)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEEEETTEEE---EECTTCCEEEE
T ss_pred EEEEeeeEEEEEEeCCCcEEEEEeCCCCEE---EECCCCeEEEE
Confidence 578999999977 4442 4589999875 22234555443
No 120
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=35.23 E-value=45 Score=22.32 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=19.7
Q ss_pred EEEEccEEEEEE--CC-EEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSR--EN-KYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~--~~-~~v~~l~~G~~f 29 (66)
++|++|+..+.. .+ .....+++||++
T Consensus 110 ~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 138 (445)
T 2cav_A 110 VLVLEGQAILVLVNPDGRDTYKLDQGDAI 138 (445)
T ss_dssp EEEEESEEEEEEEETTEEEEEEEETTEEE
T ss_pred EEEEeCEEEEEEEeCCCCEEEEecCCCEE
Confidence 688999988754 22 466789999986
No 121
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=34.28 E-value=30 Score=18.55 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=25.1
Q ss_pred EEccEEEEEECCE-EEEEeCCCCEEeccccccCCceeEEEEEccce
Q psy14742 6 LSKGRVEVSRENK-YLSTLAPGKVFGELAILYNCKRTATIKVHWTL 50 (66)
Q Consensus 6 I~~G~v~v~~~~~-~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~ 50 (66)
|++|.+++...+. .-..+.+|+.|-- ......++++.+++
T Consensus 47 vvsG~~~V~lpg~~ew~~~~aGesF~V-----pans~F~l~v~~~~ 87 (94)
T 2oyz_A 47 VVKGALVVKRVGEADWTTYSSGESFDV-----EGNSSFELQVKDAT 87 (94)
T ss_dssp EEESEEEEEETTCSSCEEEETTCEEEE-----CSSEEEEEEESSCE
T ss_pred EEEeEEEEEcCCCCcCEEECCCCEEEE-----CCCCEEEEEEcccE
Confidence 6778888877653 3456778887732 23445667776663
No 122
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=29.84 E-value=1.2e+02 Score=19.89 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=30.8
Q ss_pred eEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEE
Q psy14742 3 DRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWG 56 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~ 56 (66)
-|.|.+|+-.+..+++. ...++||+|= +-...+ .+..+.+++.++.++
T Consensus 302 Vy~V~eG~G~~~I~~~~-~~w~~gD~fv---vP~w~~--h~~~n~~~a~Lf~~~ 349 (368)
T 3nw4_A 302 VFQVFEGAGAVVMNGET-TKLEKGDMFV---VPSWVP--WSLQAETQFDLFRFS 349 (368)
T ss_dssp EEEEEESCEEEEETTEE-EEECTTCEEE---ECTTCC--EEEEESSSEEEEEEE
T ss_pred EEEEEeCcEEEEECCEE-EEecCCCEEE---ECCCCc--EEEEeCCCEEEEEEe
Confidence 37889999888888765 4689999873 222233 344556775554443
No 123
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=28.82 E-value=86 Score=20.82 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEccEEEEEE---CCEEEEEeCCCCEEe
Q psy14742 4 RILSKGRVEVSR---ENKYLSTLAPGKVFG 30 (66)
Q Consensus 4 ~iI~~G~v~v~~---~~~~v~~l~~G~~fG 30 (66)
++|++|+..+.. ++.....+++||+|-
T Consensus 68 ~yV~~G~g~~g~V~~~~~~~~~l~~GDv~~ 97 (418)
T 3s7i_A 68 LVIQQGQATVTVANGNNRKSFNLDEGHALR 97 (418)
T ss_dssp EEEEESEEEEEEECSSCEEEEEEETTEEEE
T ss_pred EEEEEeeEEEEEEecCCEEEEEecCCCEEE
Confidence 678899887754 245678899999863
No 124
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=27.67 E-value=1.1e+02 Score=18.98 Aligned_cols=47 Identities=9% Similarity=-0.018 Sum_probs=30.2
Q ss_pred ceEEEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEE
Q psy14742 2 RDRILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNL 52 (66)
Q Consensus 2 ~~~iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v 52 (66)
-+++|++|+.....++.. ..+++||++ -+-...++.....=.++++-
T Consensus 209 h~~~vL~G~g~y~l~~~~-~~V~~GD~i---~~~~~~~h~~~n~G~e~~~y 255 (266)
T 4e2q_A 209 HGLLLLEGQGIYRLGDNW-YPVQAGDVI---WMAPFVPQWYAALGKTRSRY 255 (266)
T ss_dssp EEEEEEECEEEEEETTEE-EEEETTCEE---EECTTCCEEEEEESSSCEEE
T ss_pred eEEEEEeceEEEEECCEE-EEecCCCEE---EECCCCcEEEEeCCCCCEEE
Confidence 368999999888777653 468899974 23334666555444455433
No 125
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=27.06 E-value=31 Score=19.10 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=14.6
Q ss_pred EEEEccEEEEEECCEEE--EEeCCCCEEec
Q psy14742 4 RILSKGRVEVSRENKYL--STLAPGKVFGE 31 (66)
Q Consensus 4 ~iI~~G~v~v~~~~~~v--~~l~~G~~fGe 31 (66)
++|++|..+.. .+... ..+++|+++=.
T Consensus 68 ~~VL~G~~~~~-~g~~~~~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 68 YFLTKGKMDVR-GGKAAGGDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEEEEEET-TCGGGTSEEEESSEEEEE
T ss_pred EEEEEeEEEEc-CCCEecceEeCCCEEEEE
Confidence 57778877632 22111 34667776543
No 126
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=26.00 E-value=11 Score=19.58 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=15.4
Q ss_pred EEEEccEEEEEECC--EEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSREN--KYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~~--~~v~~l~~G~~f 29 (66)
|+|.+|.+.+...+ .....+.+|+.+
T Consensus 42 ~~v~~G~~~v~~~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 42 VPMADGEMTIVAPDGTRSLAQLKTGRSY 69 (98)
T ss_dssp EESSCBC-CEECTTSCEECCCBCTTCCE
T ss_pred EEEeccEEEEEeCCCceEEEEecCCcEE
Confidence 56668888776654 233457777653
No 127
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=25.06 E-value=91 Score=20.72 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=19.5
Q ss_pred EEEEccEEEEEEC---CEEEEEeCCCCEE
Q psy14742 4 RILSKGRVEVSRE---NKYLSTLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~---~~~v~~l~~G~~f 29 (66)
++|++|+..+... ......+++||++
T Consensus 85 ~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 113 (434)
T 2ea7_A 85 LVVLNGTAVLTLVNPDSRDSYILEQGHAQ 113 (434)
T ss_dssp EEEEESEEEEEEECSSCEEEEEEETTEEE
T ss_pred EEEEecEEEEEEEeCCCCEEEEeCCCCEE
Confidence 7899999887542 2456789999886
No 128
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=23.56 E-value=41 Score=19.70 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=17.7
Q ss_pred EEEEccEEEEEE--CCEEE-EEeCCCCEE
Q psy14742 4 RILSKGRVEVSR--ENKYL-STLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~--~~~~v-~~l~~G~~f 29 (66)
++|++|+..... +++.. ..+++||++
T Consensus 104 ~~Vl~G~g~~~i~~~d~~~~~~l~~GDli 132 (179)
T 1zrr_A 104 RFFVEGAGLFCLHIGDEVFQVLCEKNDLI 132 (179)
T ss_dssp EEEEESCCCCCEECSSCEEEEECCCSCEE
T ss_pred EEEEcceEEEEEEeCCEEEEEEECCCCEE
Confidence 678888877643 44433 358999986
No 129
>2jve_A PROD1; LY-6, three-finger snake toxin, UPAR, CD59, LIMB regeneration; NMR {Notophthalmus viridescens}
Probab=22.61 E-value=78 Score=16.16 Aligned_cols=27 Identities=15% Similarity=-0.236 Sum_probs=21.2
Q ss_pred cCCceeEEEEEccceEEEEEEeecCCC
Q psy14742 36 YNCKRTATIKVHWTLNLKSWGSRTSGD 62 (66)
Q Consensus 36 ~~~~r~~tv~A~~~~~v~~l~~~~~~~ 62 (66)
.+..|+.+--|.+.+++++..++-++.
T Consensus 29 ngddrtvttcaeeqtrclfvqlpysei 55 (91)
T 2jve_A 29 NGDDRTVTTCAEEQTRCLFVQLPYSEI 55 (91)
T ss_dssp SSSCCEEEEECSTTCEEEEEECSSSEE
T ss_pred cCCCceeehhhhhhceeEEEECCHHHH
Confidence 346788888888889999998877654
No 130
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=21.63 E-value=1.3e+02 Score=17.59 Aligned_cols=55 Identities=16% Similarity=0.009 Sum_probs=32.5
Q ss_pred ceEEEEccEEEEEECCEE--------------------EEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEeecCC
Q psy14742 2 RDRILSKGRVEVSRENKY--------------------LSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRTSG 61 (66)
Q Consensus 2 ~~~iI~~G~v~v~~~~~~--------------------v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~~~~ 61 (66)
-++++..|.++++..+.. .-.++||+.+ .+..+.++...+ .++. +++....+.+
T Consensus 82 E~~ivr~G~v~l~~~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesv---tIppg~~H~f~a--geeg-vli~EvSt~~ 155 (175)
T 2y0o_A 82 ETFRCRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQY---TIPPNTKHWFQA--GEEG-AVVTEMSSTS 155 (175)
T ss_dssp EEEEEEEEEEEEEESSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEE---EECTTCCEEEEE--EEEE-EEEEEEEECC
T ss_pred eeEEEecCEEEEEECCccccCcceeccCCceeeecCCcEEEECCCCEE---EECCCCcEEEEe--CCCC-EEEEEEeCCC
Confidence 357889999998876422 2478998874 333455665544 2222 5555554444
Q ss_pred C
Q psy14742 62 D 62 (66)
Q Consensus 62 ~ 62 (66)
+
T Consensus 156 d 156 (175)
T 2y0o_A 156 T 156 (175)
T ss_dssp C
T ss_pred C
Confidence 3
No 131
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=21.44 E-value=1.4e+02 Score=20.12 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=19.0
Q ss_pred EEEEccEEEEEECC----EEE-EEeCCCCEE
Q psy14742 4 RILSKGRVEVSREN----KYL-STLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~~----~~v-~~l~~G~~f 29 (66)
++|++|.+.+...+ ..+ ..+.+||+|
T Consensus 347 ~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~ 377 (459)
T 2e9q_A 347 MYATRGNARVQVVDNFGQSVFDGEVREGQVL 377 (459)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred EEEEeeEEEEEEEeCCCCEEEeeEEeCCcEE
Confidence 67889998886542 333 469999986
No 132
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=20.77 E-value=1.5e+02 Score=20.05 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=19.2
Q ss_pred eEEEEccEEEEEECC----EE-EEEeCCCCEE
Q psy14742 3 DRILSKGRVEVSREN----KY-LSTLAPGKVF 29 (66)
Q Consensus 3 ~~iI~~G~v~v~~~~----~~-v~~l~~G~~f 29 (66)
-++|++|.+.+...+ .. -..+++||+|
T Consensus 362 i~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 362 IIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp EEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred EEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 368899999986532 23 2469999986
No 133
>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12
Probab=20.67 E-value=1.5e+02 Score=17.96 Aligned_cols=45 Identities=9% Similarity=0.194 Sum_probs=27.7
Q ss_pred EEEccEEEEEECCEEEEEeCCCCEEeccccccCCceeEEEEEccceEEEEEEeec
Q psy14742 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKVHWTLNLKSWGSRT 59 (66)
Q Consensus 5 iI~~G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~r~~tv~A~~~~~v~~l~~~~ 59 (66)
++.+|.+++ ++. .+.+|+.. .+.+ ....++.|.+++++++++...
T Consensus 186 ~v~~G~v~v--~g~---~l~~gd~~----~~~~-~~~l~l~a~~~a~~Ll~~~~~ 230 (242)
T 1tq5_A 186 QVVKGNVTI--NGV---KASTSDGL----AIWD-EQAISIHADSDSEVLLFDLPP 230 (242)
T ss_dssp EEEESEEEE--TTE---EEETTCEE----EEES-CSCEEEEESSSEEEEEEEECC
T ss_pred EEccCcEEE--CCE---EeCCCCEE----EECC-CCeEEEEeCCCCEEEEEECCc
Confidence 355777665 333 35566532 2322 234678888899999998764
No 134
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=20.03 E-value=1.5e+02 Score=20.11 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEEccEEEEEECC----EEE-EEeCCCCEE
Q psy14742 4 RILSKGRVEVSREN----KYL-STLAPGKVF 29 (66)
Q Consensus 4 ~iI~~G~v~v~~~~----~~v-~~l~~G~~f 29 (66)
++|++|.+.+...+ ..+ ..+++||+|
T Consensus 392 ~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~ 422 (493)
T 2d5f_A 392 IYVTRGKGRVRVVNAQGNAVFDGELRRGQLL 422 (493)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred EEEEeceEEEEEEcCCCCEEEeEEEcCCCEE
Confidence 78999999886532 333 569999986
Done!