RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14742
(66 letters)
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase;
HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Length = 139
Score = 66.6 bits (163), Expect = 2e-16
Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
++ G+VEV++E L T+ PGKVFGELAILYNC RTAT+K
Sbjct: 69 VMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVK 109
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit;
beta-barrel, CAMP-binding, catalytic subunit,
transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B*
3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Length = 154
Score = 64.3 bits (157), Expect = 3e-15
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
++ +G ++V N++ +++ G FGELA++Y R AT+K
Sbjct: 84 VIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVK 124
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit,
CAMP-dependent protein kinase catalytic subunit alpha;
PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus
norvegicus} PDB: 3idc_B*
Length = 161
Score = 60.8 bits (148), Expect = 7e-14
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 5 ILSKGRVEVSREN----KYLSTLAPGKVFGELAILYNCKRTATIKV 46
++ +G ++ + + + FGELA++YN R ATI
Sbjct: 84 VIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITA 129
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ
domain containing guanine nucleotide exchange factor 2,
PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Length = 134
Score = 60.1 bits (146), Expect = 8e-14
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKV 46
++ G VE+S + + L G FG L ++
Sbjct: 63 VILNGTVEISHPDGKVENLFMGNSFGITPTLDKQYMHGIVRT 104
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic
nucleotide binding domain, evolution, PKA signaling,
transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Length = 246
Score = 60.2 bits (146), Expect = 3e-13
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
++ KG V+ + +++ PG FGELA++YN R AT+
Sbjct: 53 VVEKGTVDFYVNDNKVNSSGPGSSFGELALMYNSPRAATVV 93
Score = 51.0 bits (122), Expect = 8e-10
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 5 ILSKGRVEVSREN-KYLSTLAPGKVFGELAILYNCKRTATIK 45
++ G V+VS++ ++ L FGE+A+L + R AT+
Sbjct: 171 LIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVT 212
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains,
cyclic nucleotide protein transferase, PKG; HET: CMP;
2.50A {Bos taurus}
Length = 299
Score = 59.9 bits (145), Expect = 7e-13
Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
++ G+VEV++E L T+ PGKVFGELAILYNC RTAT+K
Sbjct: 85 VMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVK 125
Score = 48.4 bits (115), Expect = 9e-09
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 5 ILSKGRVEVSRENK------YLSTLAPGKVFGELAILYNCKRTATIK 45
I+SKG+V V+RE+ +L TL G FGE A+ RTA +
Sbjct: 203 IISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVI 249
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2,
CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus
musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Length = 469
Score = 53.8 bits (128), Expect = 1e-10
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 5 ILSKGRVEVS-RENKYLSTLAPGKVFGELAILYNCKRTATIK 45
I+ KG V V + TL G FG+LA++ + R A+I
Sbjct: 384 IILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIV 425
Score = 38.4 bits (88), Expect = 4e-05
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 5 ILSKGRVEVSR-------ENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+ G ++V + + TL G FGE +IL N R ATI
Sbjct: 88 AVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIV 134
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB
tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A
{Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Length = 416
Score = 52.4 bits (125), Expect = 3e-10
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 5 ILSKGRVEVSREN----KYLSTLAPGKVFGELAILYNCKRTATIK 45
++ +G ++ + + + FGELA++YN + ATI
Sbjct: 191 VIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPKAATIT 235
Score = 44.3 bits (104), Expect = 3e-07
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 5 ILSKGRVEVSRENK-----------YLSTLAPGKVFGELAILYNCKRTATIK 45
I+ G V+++ + K ++ G+ FGELA++ N R A+
Sbjct: 313 IVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASAH 364
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2; CNBD, C-linker, pacemaker,
HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A
{Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A*
3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Length = 202
Score = 51.9 bits (125), Expect = 3e-10
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+ G V V + L+ G FGE+ +L +RTA+++
Sbjct: 118 FIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVR 158
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 51.3 bits (122), Expect = 9e-10
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
++ +G V+V ++++ ++ G FGELA++Y R AT+K
Sbjct: 176 VVDQGEVDVYVNGEWVTNISEGGSFGELALIYGTPRAATVK 216
Score = 47.8 bits (113), Expect = 2e-08
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 5 ILSKGRVEVSR------ENKYLSTLAPGKVFGELAILYNCKRTATIK 45
I+++G V + E + L P FGE+A+L N R AT+
Sbjct: 294 IITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVV 340
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG
potassium channel; dimer helical bundle beta barrel
core with cyclic AMP bound; HET: CMP; 1.70A
{Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A*
2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Length = 138
Score = 49.6 bits (119), Expect = 1e-09
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+ +G V V+ N L PG FGE+A++ R+AT+
Sbjct: 57 FVVEGSVSVATPNP--VELGPGAFFGEMALISGEPRSATVS 95
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic
nucleotide binding domain, C-linker, CAM SPHCN1, HCN;
HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Length = 198
Score = 48.4 bits (116), Expect = 7e-09
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 5 ILSKGRVEV-SRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
+ +G V++ + ++L+ G FGE+ +L +R A++K
Sbjct: 117 FIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTRERRVASVK 158
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit,
CAMP-dependent protein kinase, alpha-catalytic SU;
cyclic adenosine monophosphate; HET: SEP TPO ANP TAM;
2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Length = 291
Score = 48.1 bits (114), Expect = 1e-08
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIK 45
++ +G ++V N++ +++ G FGELA++Y R AT+K
Sbjct: 85 VIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVK 125
Score = 46.2 bits (109), Expect = 6e-08
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 5 ILSKGRVEVSR------ENKYLSTLAPGKVFGELAILYNCKRTATIK 45
I+ +G V + E + L P FGE+A+L N + AT+
Sbjct: 203 IILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVV 249
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable
regulatory domain of potassium channel, membrane PR
transport protein; 2.20A {Mus musculus}
Length = 160
Score = 47.3 bits (113), Expect = 1e-08
Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILY--NCKRTATIK 45
+ G +EV ++++ ++ L G VFG++ + A ++
Sbjct: 73 FVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVR 115
>3ukn_A Novel protein similar to vertebrate potassium VOL channel,
subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD,
CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB:
3ukt_B 3ukv_B
Length = 212
Score = 45.8 bits (109), Expect = 6e-08
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNC--KRTATIK 45
+ G +EV ++N L+ L G + G ++ K A +K
Sbjct: 121 FVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTNANVK 163
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide
binding protein, structural genomics; HET: MSE CMP;
1.79A {Methylobacillus flagellatus KT}
Length = 187
Score = 45.1 bits (107), Expect = 9e-08
Identities = 8/45 (17%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTATI 44
++ G V V ++ + ++ + G + GE++++ R+A+
Sbjct: 85 LILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASC 129
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling;
HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB:
4avb_A* 4avc_A*
Length = 333
Score = 41.9 bits (98), Expect = 2e-06
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 5 ILSKGRVEVSREN----KYLSTLAPGKVFGELAILYNCKRTATIKVH 47
++S G EVS ++ PG + GE+A+L + R+AT+
Sbjct: 59 LISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTI 105
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural
genomics, joint center for structural genomics; HET:
MSE; 1.90A {Geobacter metallireducens}
Length = 142
Score = 40.8 bits (96), Expect = 2e-06
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 5 ILSKGRVEVSRE--------NKYLSTLAPGKVFGELAILYNCKRTAT 43
+L +G VE+ N + ++ PG +FG +++ T++
Sbjct: 52 LLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSS 98
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 40.2 bits (94), Expect = 7e-06
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 5 ILSKGRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKV 46
+ +G V V+ N L PG FGE+A++ R+AT+
Sbjct: 274 FVVEGSVSVATPNP--VELGPGAFFGEMALISGEPRSATVSA 313
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces
coelicolor structural genomics, PSI-2, protein
structure initiative; 2.00A {Streptomyces coelicolor
A3}
Length = 149
Score = 39.6 bits (93), Expect = 8e-06
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTAT 43
++++G+V++ R + L+ + P ++ GEL++ RTAT
Sbjct: 51 VVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRTAT 94
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide
monophosphate, CNMP, CNMP-binding, structural genomics;
NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Length = 137
Score = 37.5 bits (87), Expect = 4e-05
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 15/56 (26%)
Query: 5 ILSKGRVEVSREN------KYLSTLAPGKVFGELAILYNC---------KRTATIK 45
+ +GR+E + S L G G+ + + T T+K
Sbjct: 52 FIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVK 107
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged
helix-turn-helix motif, DNA binding, transcription
activator; HET: CMP; 2.40A {Thermus thermophilus}
Length = 216
Score = 33.7 bits (78), Expect = 0.001
Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTAT 43
+++ G+V + R + + L+ L PG++FGE+++L +R+A+
Sbjct: 45 LVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSAS 88
>2z69_A DNR protein; beta barrel, dimerization helix, transcription
regulator; 2.10A {Pseudomonas aeruginosa}
Length = 154
Score = 33.4 bits (77), Expect = 0.001
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAIL 35
L G V++ R K L F E +
Sbjct: 58 YLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMF 93
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP),
dimer, inactive(APO, unliganded allostery, DNA binding,
cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB:
3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Length = 227
Score = 33.4 bits (77), Expect = 0.002
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTAT 43
I+ G+V++ R L+ + P +FGEL+I RT++
Sbjct: 52 IIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSS 95
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.86A {Deinococcus
geothermalis dsm 11300}
Length = 231
Score = 32.6 bits (75), Expect = 0.004
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTAT 43
+++ G V VSR + + L + V GE A+L + +R+A+
Sbjct: 52 LVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQERSAS 95
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding,
DNA-binding nucleotide-binding, transcription,
transcription regulation; HET: CMP; 1.66A {Escherichia
coli}
Length = 260
Score = 31.2 bits (71), Expect = 0.012
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILYNCK-RTAT 43
+ KG V V ++ LS L G GEL + + R+A
Sbjct: 92 YIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAW 136
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP),
allostery, DNA binding cyclic A transcription
regulator; HET: CMP; 1.60A {Escherichia coli} PDB:
2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A*
1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A
3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Length = 210
Score = 31.0 bits (71), Expect = 0.014
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILYNCK-RTAT 43
+ KG V V ++ LS L G GEL + + R+A
Sbjct: 42 YIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAW 86
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP
regulatory protein, structural genomi 2, protein
structure initiative; 2.20A {Ruegeria pomeroyi} PDB:
3h3z_A*
Length = 237
Score = 30.7 bits (70), Expect = 0.019
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTAT 43
++ G V++ R +S G+ FGE L N +
Sbjct: 57 VVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYPVS 100
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics,
porphyromona gingivalis, PSI, protein structure
initiative; 1.90A {Porphyromonas gingivalis} SCOP:
a.4.5.4 b.82.3.2
Length = 232
Score = 30.3 bits (69), Expect = 0.022
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTAT 43
L +G++++ RE + PG+ FG ++T
Sbjct: 56 YLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSST 99
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional
regulat transcription; HET: PR3; 2.3A {Listeria
monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A*
1omi_A
Length = 238
Score = 30.4 bits (69), Expect = 0.024
Identities = 5/44 (11%), Positives = 9/44 (20%), Gaps = 5/44 (11%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTAT 43
L G +++ + L V I
Sbjct: 41 FLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYY 84
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription,
transcription regulation; HET: BOG; 1.90A {Anabaena}
PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Length = 243
Score = 30.0 bits (68), Expect = 0.034
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILYN--CKRTAT 43
L KG V++SR ++ L VFG L++L R
Sbjct: 66 FLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYH 111
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural
genomics, joint center for structura genomics, JCSG;
2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4
b.82.3.2
Length = 232
Score = 29.5 bits (67), Expect = 0.049
Identities = 3/36 (8%), Positives = 10/36 (27%), Gaps = 5/36 (13%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAIL 35
L KG + + + + + ++
Sbjct: 66 FLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLF 101
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE
JCSG, PSI, protein structure initiative, joint center
for S genomics; 2.30A {Thermotoga maritima} SCOP:
b.82.3.2
Length = 213
Score = 29.1 bits (66), Expect = 0.062
Identities = 5/36 (13%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAIL 35
IL +G ++ + + + P ++ I
Sbjct: 45 ILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIF 80
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration;
HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense}
SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A
3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Length = 250
Score = 28.4 bits (64), Expect = 0.11
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAIL 35
L +G++++ K L + G+L
Sbjct: 55 FLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPT 90
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix,
transcription factor, CAMP-B proteins, CAMP receptor
protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.4 b.82.3.2
Length = 207
Score = 28.0 bits (63), Expect = 0.15
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 5 ILSKGRVEVSRENKY-----LSTLAPGKVFGELAIL----YNCKRTAT 43
+ KG V + E+ + L G FGEL + +R+A
Sbjct: 36 FIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAW 83
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary
phase, DNA-binding, transcription regulation; 1.50A
{Thermus thermophilus}
Length = 202
Score = 28.0 bits (63), Expect = 0.16
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 5 ILSKGRVEVSRENKY-----LSTLAPGKVFGELAIL 35
+ +G V + ++ L + PG FGE A+
Sbjct: 30 RVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEALF 65
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix,
homodimer, transcription regulator; 3.60A {Pseudomonas
aeruginosa}
Length = 227
Score = 27.6 bits (62), Expect = 0.20
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 5/41 (12%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILYNCKR 40
L G V++ R K L F E + +
Sbjct: 55 YLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPN 95
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity,
CRP, CLP, C-DI-GMP receptor, quorum SENS binding,
transcription; 2.30A {Xanthomonas campestris PV}
Length = 230
Score = 26.9 bits (60), Expect = 0.36
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 6/45 (13%)
Query: 5 ILSKGRVEVSREN-----KYLSTLAPGKVFGELAILY-NCKRTAT 43
+ G V + E L G+ GE+ + + R
Sbjct: 57 YVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTREVI 101
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme
sensor, catabolite gene activator protein; HET: HEM;
2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Length = 222
Score = 25.7 bits (57), Expect = 1.1
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 5 ILSKGRVEVSREN----KYLSTLAPGKVFGELA 33
++ GR+ V L L G +F +
Sbjct: 46 VVVDGRLRVYLVGEEREISLFYLTSGDMFCMHS 78
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken
structural genomics/proteomics in RSGI; 1.92A {Thermus
thermophilus} PDB: 2zdb_A
Length = 195
Score = 24.8 bits (55), Expect = 2.1
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 5 ILSKGRVEVSRENKY-----LSTLAPGKVFGELAIL 35
L +G V V L + PG FGE A+
Sbjct: 22 RLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEALE 57
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1;
DNA transcription regulator, DNA binding protein; HET:
HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB:
2hkx_A*
Length = 220
Score = 23.8 bits (52), Expect = 4.3
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 5 ILSKGRVEVSREN----KYLSTLAPGKVFGELA 33
++ GRV V L+ L G +F
Sbjct: 50 LVKSGRVRVYLAYEDKEFTLAILEAGDIFCTHT 82
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 23.9 bits (51), Expect = 4.6
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 3 DRILSKGRVEV--SRENKYLSTLAPGKVFG 30
+ G + + + YL G VF
Sbjct: 2 SHMAWPGPLLLKDRKGRAYLVFPKEGGVFH 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.397
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 954,753
Number of extensions: 39266
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 48
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)