RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14742
         (66 letters)



>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 136

 Score = 23.9 bits (51), Expect = 1.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 29  FGELAILYNCKRTATIK 45
           FGELA++Y   R AT+K
Sbjct: 90  FGELALIYGTPRAATVK 106


>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase
          A {Cow (Bos taurus) [TaxId: 9913]}
          Length = 132

 Score = 24.0 bits (51), Expect = 1.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 23 LAPGKVFGELAILYNCKRTATIK 45
          L P   FGE+A+L N  R AT+ 
Sbjct: 72 LGPSDYFGEIALLMNRPRAATVV 94


>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 266

 Score = 23.5 bits (50), Expect = 2.7
 Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 4/27 (14%)

Query: 3  DRILSKGRVEVSRENKYLSTLAPGKVF 29
          DR+L    +    E+++L  L   K  
Sbjct: 15 DRVL----LSFEDESEFLVDLEKDKKL 37


>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 264

 Score = 23.0 bits (49), Expect = 3.1
 Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 4/27 (14%)

Query: 3  DRILSKGRVEVSRENKYLSTLAPGKVF 29
          +R+     +  ++  +Y  +L PG  F
Sbjct: 8  ERVQ----LTDAKGRRYTMSLTPGAEF 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 234,960
Number of extensions: 7394
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 4
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)