Query psy14743
Match_columns 86
No_of_seqs 231 out of 1141
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:30:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mdp_A Cyclic nucleotide-bindi 99.5 2.9E-14 1E-18 88.2 6.6 76 2-77 7-91 (142)
2 1vp6_A CNBD, cyclic-nucleotide 99.5 1E-13 3.4E-18 85.7 5.5 71 3-74 13-83 (138)
3 3ocp_A PRKG1 protein; serine/t 99.4 1.5E-13 5.3E-18 85.4 5.6 72 3-74 25-97 (139)
4 4f8a_A Potassium voltage-gated 99.4 6.1E-13 2.1E-17 83.8 8.1 76 3-78 29-105 (160)
5 3of1_A CAMP-dependent protein 99.4 2.1E-13 7.1E-18 91.0 5.6 73 2-74 8-81 (246)
6 3idb_B CAMP-dependent protein 99.4 3.7E-13 1.3E-17 85.7 6.3 74 3-77 40-119 (161)
7 2z69_A DNR protein; beta barre 99.4 7.1E-13 2.4E-17 82.9 7.5 74 3-76 14-93 (154)
8 1zyb_A Transcription regulator 99.4 1.4E-12 4.9E-17 87.5 9.3 77 2-78 19-103 (232)
9 2pqq_A Putative transcriptiona 99.4 6.5E-13 2.2E-17 82.5 7.1 76 2-77 6-87 (149)
10 3pna_A CAMP-dependent protein 99.4 3.1E-13 1.1E-17 85.6 5.7 72 3-74 40-112 (154)
11 4ev0_A Transcription regulator 99.4 7.3E-13 2.5E-17 87.2 7.5 72 3-74 1-78 (216)
12 2d93_A RAP guanine nucleotide 99.4 7E-13 2.4E-17 82.1 5.7 76 3-78 18-95 (134)
13 3dv8_A Transcriptional regulat 99.4 9.8E-13 3.4E-17 86.8 6.6 61 2-62 4-64 (220)
14 3iwz_A CAP-like, catabolite ac 99.4 1.3E-12 4.3E-17 86.8 6.8 76 2-77 12-93 (230)
15 2ptm_A Hyperpolarization-activ 99.4 8.2E-13 2.8E-17 86.8 5.6 72 3-74 73-146 (198)
16 3gyd_A CNMP-BD protein, cyclic 99.4 1.9E-12 6.6E-17 84.9 7.2 72 3-74 41-118 (187)
17 3dn7_A Cyclic nucleotide bindi 99.4 1.3E-12 4.3E-17 85.1 6.2 71 3-73 9-85 (194)
18 3ukn_A Novel protein similar t 99.4 2.3E-12 7.7E-17 85.5 7.5 76 3-78 77-153 (212)
19 3dkw_A DNR protein; CRP-FNR, H 99.4 1.3E-12 4.4E-17 86.6 6.3 74 3-76 11-90 (227)
20 3shr_A CGMP-dependent protein 99.3 1.7E-12 6E-17 89.6 6.7 77 2-78 40-117 (299)
21 1wgp_A Probable cyclic nucleot 99.3 1.4E-12 4.9E-17 80.5 5.5 73 2-74 7-86 (137)
22 3bpz_A Potassium/sodium hyperp 99.3 1.1E-12 3.8E-17 86.5 4.9 72 3-74 74-146 (202)
23 3fx3_A Cyclic nucleotide-bindi 99.3 1.9E-12 6.6E-17 86.5 6.1 72 3-74 13-90 (237)
24 3e97_A Transcriptional regulat 99.3 1.7E-12 5.8E-17 86.5 5.4 76 2-77 7-88 (231)
25 4ava_A Lysine acetyltransferas 99.3 4.3E-12 1.5E-16 89.0 7.1 73 3-75 15-92 (333)
26 3d0s_A Transcriptional regulat 99.3 1.7E-12 5.8E-17 86.3 4.6 72 3-74 8-85 (227)
27 4din_B CAMP-dependent protein 99.3 1.8E-12 6.1E-17 93.8 5.0 77 2-78 131-208 (381)
28 2qcs_B CAMP-dependent protein 99.3 3.5E-12 1.2E-16 87.5 6.0 77 2-78 40-117 (291)
29 3of1_A CAMP-dependent protein 99.3 6.1E-12 2.1E-16 83.8 6.3 73 3-75 127-201 (246)
30 1o7f_A CAMP-dependent RAP1 gua 99.3 9.8E-12 3.4E-16 90.6 7.7 74 3-77 44-125 (469)
31 3tnp_B CAMP-dependent protein 99.3 9.8E-12 3.4E-16 91.0 6.8 75 2-77 146-226 (416)
32 2gau_A Transcriptional regulat 99.3 7.7E-12 2.6E-16 83.3 5.7 70 5-74 14-89 (232)
33 2fmy_A COOA, carbon monoxide o 99.2 3.7E-12 1.3E-16 84.4 2.6 71 1-72 4-80 (220)
34 3shr_A CGMP-dependent protein 99.2 1.8E-11 6.2E-16 84.5 5.4 76 3-78 159-241 (299)
35 4f7z_A RAP guanine nucleotide 99.2 7.1E-11 2.4E-15 93.8 8.8 60 2-61 43-102 (999)
36 2qcs_B CAMP-dependent protein 99.2 1E-10 3.5E-15 80.2 8.4 75 3-77 159-240 (291)
37 1o7f_A CAMP-dependent RAP1 gua 99.2 6.8E-11 2.3E-15 86.2 7.7 76 3-78 339-417 (469)
38 1ft9_A Carbon monoxide oxidati 99.2 4.1E-12 1.4E-16 84.4 0.7 54 3-56 2-55 (222)
39 3ryp_A Catabolite gene activat 99.2 7.4E-11 2.5E-15 77.2 6.4 71 7-77 2-78 (210)
40 3tnp_B CAMP-dependent protein 99.1 1.6E-10 5.6E-15 84.6 8.4 77 2-78 268-356 (416)
41 2oz6_A Virulence factor regula 99.1 4.5E-10 1.5E-14 73.3 7.3 67 12-78 1-73 (207)
42 4din_B CAMP-dependent protein 99.0 8E-11 2.8E-15 85.1 3.0 75 3-77 250-331 (381)
43 3cf6_E RAP guanine nucleotide 99.0 3.4E-10 1.2E-14 88.1 6.6 72 3-74 34-108 (694)
44 3beh_A MLL3241 protein; transm 99.0 3.4E-11 1.1E-15 86.0 0.0 75 2-77 229-303 (355)
45 2bgc_A PRFA; bacterial infecti 99.0 7.2E-10 2.4E-14 74.5 6.5 68 10-77 2-76 (238)
46 4f7z_A RAP guanine nucleotide 99.0 1.1E-09 3.6E-14 87.1 7.9 76 3-78 339-417 (999)
47 3e6c_C CPRK, cyclic nucleotide 99.0 4.1E-10 1.4E-14 76.0 4.4 67 6-72 14-86 (250)
48 3kcc_A Catabolite gene activat 99.0 9.3E-10 3.2E-14 75.1 6.2 71 8-78 53-129 (260)
49 1o5l_A Transcriptional regulat 98.9 5.5E-10 1.9E-14 73.9 3.5 73 5-77 3-81 (213)
50 3la7_A Global nitrogen regulat 98.7 2E-08 7E-13 67.6 5.7 61 14-74 30-99 (243)
51 2zcw_A TTHA1359, transcription 98.5 1.1E-07 3.7E-12 62.1 3.4 42 21-62 2-45 (202)
52 3b02_A Transcriptional regulat 98.4 2.2E-07 7.5E-12 60.4 4.3 49 27-76 2-56 (195)
53 2xp1_A SPT6; transcription, IW 84.0 1.3 4.5E-05 29.1 3.9 45 4-54 12-59 (178)
54 3rns_A Cupin 2 conserved barre 83.1 2.7 9.2E-05 27.8 5.3 37 25-61 40-76 (227)
55 3fjs_A Uncharacterized protein 80.7 2.8 9.7E-05 24.6 4.3 37 25-61 39-75 (114)
56 3lwc_A Uncharacterized protein 78.3 4.1 0.00014 24.4 4.5 36 25-61 43-78 (119)
57 1yhf_A Hypothetical protein SP 75.2 5.3 0.00018 22.8 4.3 37 25-61 43-79 (115)
58 2ozj_A Cupin 2, conserved barr 75.0 3.4 0.00012 23.8 3.4 34 28-61 44-77 (114)
59 2gu9_A Tetracenomycin polyketi 72.7 5.7 0.00019 22.3 4.0 37 25-61 24-63 (113)
60 3rns_A Cupin 2 conserved barre 70.5 5.7 0.0002 26.1 4.0 38 25-62 156-193 (227)
61 3or8_A Transcription elongatio 70.1 6.2 0.00021 26.3 4.1 46 4-54 6-55 (197)
62 4e2g_A Cupin 2 conserved barre 69.9 6.1 0.00021 22.9 3.7 37 25-61 44-80 (126)
63 1v70_A Probable antibiotics sy 68.9 8 0.00027 21.1 4.0 37 25-61 31-68 (105)
64 2pfw_A Cupin 2, conserved barr 65.3 7.4 0.00025 22.1 3.4 37 25-61 37-73 (116)
65 3h8u_A Uncharacterized conserv 63.6 9.5 0.00033 22.1 3.7 36 25-60 42-79 (125)
66 1sfn_A Conserved hypothetical 62.9 8.5 0.00029 25.7 3.7 46 24-69 167-213 (246)
67 2fqp_A Hypothetical protein BP 60.2 5.6 0.00019 22.3 2.1 35 25-59 21-56 (97)
68 1o5u_A Novel thermotoga mariti 58.6 14 0.00048 21.4 3.8 45 12-58 20-65 (101)
69 3ibm_A Cupin 2, conserved barr 58.0 12 0.00042 23.4 3.7 36 26-61 60-95 (167)
70 2f4p_A Hypothetical protein TM 55.8 17 0.00059 22.0 4.0 37 25-61 51-87 (147)
71 3kvp_A Uncharacterized protein 55.3 15 0.0005 20.7 3.2 20 43-62 30-49 (72)
72 2b8m_A Hypothetical protein MJ 54.6 13 0.00044 21.2 3.2 37 26-62 31-67 (117)
73 1vj2_A Novel manganese-contain 54.1 11 0.00039 22.0 2.9 37 25-61 51-87 (126)
74 4e2q_A Ureidoglycine aminohydr 53.5 15 0.00052 25.4 3.8 46 24-69 188-234 (266)
75 3h7j_A Bacilysin biosynthesis 53.1 19 0.00065 23.7 4.1 39 24-62 36-74 (243)
76 1sq4_A GLXB, glyoxylate-induce 51.7 17 0.00059 24.7 3.8 46 24-69 193-239 (278)
77 1y9q_A Transcriptional regulat 51.3 23 0.00078 22.1 4.2 36 26-61 108-145 (192)
78 3i7d_A Sugar phosphate isomera 51.1 9.1 0.00031 23.9 2.2 37 25-61 46-84 (163)
79 2pyt_A Ethanolamine utilizatio 50.7 9.4 0.00032 23.3 2.2 34 26-61 61-94 (133)
80 2o1q_A Putative acetyl/propion 48.6 15 0.0005 22.6 2.8 33 24-56 46-78 (145)
81 1o4t_A Putative oxalate decarb 48.5 22 0.00076 21.0 3.6 37 25-61 60-97 (133)
82 4i4a_A Similar to unknown prot 48.0 18 0.0006 20.9 3.0 38 25-62 37-74 (128)
83 1sfn_A Conserved hypothetical 47.9 30 0.001 22.9 4.5 35 25-61 53-87 (246)
84 3d0j_A Uncharacterized protein 47.7 9.9 0.00034 24.1 1.9 43 36-78 44-90 (140)
85 3l2h_A Putative sugar phosphat 47.2 11 0.00037 23.1 2.0 38 25-62 49-88 (162)
86 1sef_A Conserved hypothetical 47.1 20 0.00069 24.1 3.6 39 25-63 185-224 (274)
87 3h7j_A Bacilysin biosynthesis 46.4 18 0.00062 23.9 3.2 37 26-62 149-186 (243)
88 3kgz_A Cupin 2 conserved barre 46.2 12 0.00042 23.3 2.2 35 27-61 49-83 (156)
89 2q30_A Uncharacterized protein 45.7 37 0.0013 18.7 4.3 34 25-58 36-71 (110)
90 2opk_A Hypothetical protein; p 45.2 15 0.00052 21.3 2.4 22 40-61 51-72 (112)
91 2bnm_A Epoxidase; oxidoreducta 44.4 16 0.00056 22.9 2.6 35 25-59 120-157 (198)
92 2oa2_A BH2720 protein; 1017534 43.2 48 0.0016 19.8 4.6 35 27-61 48-83 (148)
93 3cew_A Uncharacterized cupin p 43.1 17 0.00057 21.1 2.4 37 25-61 29-67 (125)
94 3jzv_A Uncharacterized protein 42.6 12 0.00039 23.7 1.7 35 27-61 58-92 (166)
95 3es1_A Cupin 2, conserved barr 42.3 18 0.00061 23.3 2.6 34 25-58 82-115 (172)
96 2vpv_A Protein MIF2, MIF2P; nu 41.8 12 0.00041 24.1 1.7 22 41-62 109-130 (166)
97 3bu7_A Gentisate 1,2-dioxygena 41.7 14 0.00047 27.0 2.1 36 27-62 299-334 (394)
98 1y3t_A Hypothetical protein YX 40.3 37 0.0013 22.9 4.1 36 25-60 49-85 (337)
99 1lr5_A Auxin binding protein 1 39.9 17 0.00056 22.3 2.1 35 25-59 44-78 (163)
100 3bcw_A Uncharacterized protein 39.5 16 0.00054 22.0 1.9 30 27-57 54-83 (123)
101 1j58_A YVRK protein; cupin, de 39.3 44 0.0015 23.3 4.5 34 25-58 260-294 (385)
102 1rc6_A Hypothetical protein YL 39.1 23 0.00078 23.6 2.8 39 25-63 182-221 (261)
103 2q1z_B Anti-sigma factor CHRR, 37.8 34 0.0011 22.1 3.4 31 24-54 127-157 (195)
104 2lyd_B Pacman protein; DCP1, X 36.3 15 0.00052 17.9 1.1 13 67-79 12-24 (38)
105 4e2q_A Ureidoglycine aminohydr 36.1 21 0.00072 24.6 2.3 36 25-60 73-109 (266)
106 1r1p_A GRB2-related adaptor pr 36.1 60 0.0021 18.3 4.2 35 3-42 6-41 (100)
107 4axo_A EUTQ, ethanolamine util 35.0 20 0.00068 22.6 1.9 21 41-61 83-103 (151)
108 4b29_A Dimethylsulfoniopropion 35.0 41 0.0014 22.7 3.5 32 27-58 137-168 (217)
109 3d82_A Cupin 2, conserved barr 34.7 25 0.00086 19.1 2.1 19 42-60 50-68 (102)
110 1yfu_A 3-hydroxyanthranilate-3 32.2 23 0.00078 23.2 1.8 38 41-78 54-91 (174)
111 2i45_A Hypothetical protein; n 32.0 22 0.00074 19.9 1.6 18 42-59 48-65 (107)
112 3e9v_A Protein BTG2; B-cell tr 30.3 95 0.0032 18.9 4.5 34 10-43 78-111 (120)
113 3nw4_A Gentisate 1,2-dioxygena 29.6 38 0.0013 24.5 2.8 39 25-63 106-145 (368)
114 2o8q_A Hypothetical protein; c 28.6 37 0.0013 19.7 2.2 18 42-59 64-81 (134)
115 2vqa_A SLL1358 protein, MNCA; 28.5 73 0.0025 21.9 4.1 33 25-57 237-270 (361)
116 2d0s_A Cytochrome C, cytochrom 27.7 31 0.0011 18.1 1.7 19 6-24 57-75 (79)
117 3us4_A Megakaryocyte-associate 27.6 83 0.0028 17.4 3.6 50 3-57 2-55 (98)
118 1dgw_A Canavalin; duplicated s 26.2 38 0.0013 21.3 2.1 35 24-58 43-77 (178)
119 2d40_A Z3393, putative gentisa 24.7 38 0.0013 23.9 2.0 31 25-55 103-133 (354)
120 2lnw_A VAV-2, guanine nucleoti 24.5 1.1E+02 0.0039 17.9 4.6 49 3-56 19-71 (122)
121 2kk6_A Proto-oncogene tyrosine 24.2 46 0.0016 19.6 2.1 43 8-57 20-65 (116)
122 3es4_A Uncharacterized protein 24.1 43 0.0015 20.2 2.0 32 27-59 47-78 (116)
123 3lag_A Uncharacterized protein 23.9 26 0.00088 19.9 0.9 35 25-59 20-55 (98)
124 3ht1_A REMF protein; cupin fol 23.7 26 0.00088 20.5 0.9 14 43-56 60-73 (145)
125 1juh_A Quercetin 2,3-dioxygena 23.4 49 0.0017 23.2 2.4 28 32-59 262-289 (350)
126 2qjv_A Uncharacterized IOLB-li 23.3 1.3E+02 0.0045 20.8 4.5 37 24-60 31-67 (270)
127 2dlz_A Protein VAV-2; RHO fami 23.1 84 0.0029 18.3 3.1 34 3-41 13-47 (118)
128 3ebr_A Uncharacterized RMLC-li 22.6 38 0.0013 21.2 1.6 33 24-56 44-76 (159)
129 2kno_A Tensin-like C1 domain-c 22.3 1.3E+02 0.0045 17.9 4.3 35 8-47 23-57 (131)
130 3eaz_A Tyrosine-protein kinase 22.3 92 0.0031 17.6 3.1 50 3-57 5-58 (106)
131 2qnk_A 3-hydroxyanthranilate 3 22.3 96 0.0033 21.8 3.7 37 25-62 210-246 (286)
132 3k2m_A Proto-oncogene tyrosine 22.2 81 0.0028 18.0 2.9 51 3-58 2-56 (112)
133 3mb2_A 4-oxalocrotonate tautom 21.8 30 0.001 18.4 0.8 25 1-25 1-25 (72)
134 1mil_A SHC adaptor protein; SH 21.4 51 0.0018 18.8 1.9 48 3-57 4-55 (104)
135 3cjx_A Protein of unknown func 21.3 64 0.0022 20.4 2.4 32 24-55 45-76 (165)
136 3ej9_A Alpha-subunit of trans- 21.1 34 0.0012 18.6 1.0 24 1-24 1-24 (76)
137 3v2d_0 50S ribosomal protein L 21.0 1.3E+02 0.0045 17.3 3.9 32 27-58 29-72 (85)
138 1zvf_A 3-hydroxyanthranilate 3 20.7 47 0.0016 21.8 1.7 38 41-78 53-94 (176)
139 2vif_A Suppressor of cytokine 20.4 1.3E+02 0.0045 18.0 3.7 44 8-56 27-73 (141)
140 2qnk_A 3-hydroxyanthranilate 3 20.2 38 0.0013 23.9 1.3 40 39-78 48-87 (286)
141 3o14_A Anti-ecfsigma factor, C 20.0 1.4E+02 0.0049 19.6 4.1 31 24-55 148-178 (223)
142 1ayg_A Cytochrome C-552; elect 20.0 52 0.0018 17.2 1.6 18 6-24 59-76 (80)
No 1
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.51 E-value=2.9e-14 Score=88.18 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=63.4
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc---------ccCccCcc
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG---------PMQKVPGP 72 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~---------~~~~~~~~ 72 (86)
.|+++++|++|++++++.++..+..+.|++|++|+++|+.++++|+|.+|.|+++..+.++.. .-+++||+
T Consensus 7 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~ 86 (142)
T 3mdp_A 7 RLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGV 86 (142)
T ss_dssp GGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECG
T ss_pred HHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEech
Confidence 478999999999999999999999999999999999999999999999999999875544321 24678888
Q ss_pred cCCCC
Q psy14743 73 MQKVP 77 (86)
Q Consensus 73 ~~~~~ 77 (86)
++-..
T Consensus 87 ~~~~~ 91 (142)
T 3mdp_A 87 SSLIK 91 (142)
T ss_dssp GGSST
T ss_pred HHHcC
Confidence 76553
No 2
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.45 E-value=1e-13 Score=85.72 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=62.7
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCcccCccCcccC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQ 74 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~~~~~~~~~~~ 74 (86)
|+++++|++|++++++.++..++.+.|++|++|+++|+..+++|+|.+|.++++..+ ...-.-+++||++.
T Consensus 13 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-~~~~~~G~~~G~~~ 83 (138)
T 1vp6_A 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-PVELGPGAFFGEMA 83 (138)
T ss_dssp HTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-CEEECTTCEECHHH
T ss_pred HHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-cceECCCCEeeehH
Confidence 688999999999999999999999999999999999999999999999999998766 22334566788764
No 3
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.43 E-value=1.5e-13 Score=85.41 Aligned_cols=72 Identities=61% Similarity=0.857 Sum_probs=61.9
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC-cccCccCcccC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP-GPMQKVPGPMQ 74 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~-~~~~~~~~~~~ 74 (86)
|+++++|++|++++++.++..+..+.|++|++|+++|+.++++|+|.+|.|++++.+.... -.-+++||+++
T Consensus 25 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~~~~~~G~~fGe~~ 97 (139)
T 3ocp_A 25 ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELA 97 (139)
T ss_dssp HHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTEEEEEECTTCEESCHH
T ss_pred HhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCEEEEEeCCCCEeccHH
Confidence 6789999999999999999999999999999999999999999999999999987553221 12457788765
No 4
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.43 E-value=6.1e-13 Score=83.80 Aligned_cols=76 Identities=12% Similarity=0.045 Sum_probs=64.6
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc-CcccCccCcccCCCCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV-PGPMQKVPGPMQKVPG 78 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~-~~~~~~~~~~~~~~~~ 78 (86)
|+++++|++|++++++.++..+..+.|++|++|+++|+.++++|+|.+|.|+++..+... .-.-+++||++.-..+
T Consensus 29 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fG~~~~~~~ 105 (160)
T 4f8a_A 29 FKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEA 105 (160)
T ss_dssp HTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEETTEEEEEEETTCEEECCTTTCS
T ss_pred HHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEECCEEEEEecCCCEeCcHHHhcC
Confidence 678999999999999999999999999999999999999999999999999998744222 1225678888765544
No 5
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.1e-13 Score=91.04 Aligned_cols=73 Identities=26% Similarity=0.358 Sum_probs=63.1
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC-cccCccCcccC
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP-GPMQKVPGPMQ 74 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~-~~~~~~~~~~~ 74 (86)
.|+++++|++|++++++.++..+..+.|++|++|+++||.++++|+|++|.|+++..+.... -.-+++||+++
T Consensus 8 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~g~~fGe~~ 81 (246)
T 3of1_A 8 SIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFGELA 81 (246)
T ss_dssp HHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTSCCEEECTTCEECHHH
T ss_pred HHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCEEEEecCCCCeeehhH
Confidence 47889999999999999999999999999999999999999999999999999997654331 12466778765
No 6
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.41 E-value=3.7e-13 Score=85.67 Aligned_cols=74 Identities=22% Similarity=0.264 Sum_probs=63.0
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC------cccCccCcccCCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP------GPMQKVPGPMQKV 76 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~------~~~~~~~~~~~~~ 76 (86)
|+++++|++|++++++.|+..+..+.|++|++|+++|+.++++|+|.+|.|+++. +..+. -.-+++||+++-.
T Consensus 40 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~fGe~~~~ 118 (161)
T 3idb_B 40 CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGELALM 118 (161)
T ss_dssp HTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCCEECGGGGT
T ss_pred HhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCCEechHHHH
Confidence 6789999999999999999999999999999999999999999999999999987 32221 1136688887655
Q ss_pred C
Q psy14743 77 P 77 (86)
Q Consensus 77 ~ 77 (86)
-
T Consensus 119 ~ 119 (161)
T 3idb_B 119 Y 119 (161)
T ss_dssp C
T ss_pred c
Confidence 4
No 7
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.41 E-value=7.1e-13 Score=82.88 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=62.6
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcccCCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPMQKV 76 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~~~~ 76 (86)
|+++++|++|++++++.++..+..+.|++|++|+++|+..+++|+|.+|.|++++.+.++.. .-+++||++.-.
T Consensus 14 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~ 93 (154)
T 2z69_A 14 LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMF 93 (154)
T ss_dssp HTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGGG
T ss_pred hhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhc
Confidence 67899999999999999999999999999999999999999999999999999975443321 246678877644
No 8
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.41 E-value=1.4e-12 Score=87.49 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=66.3
Q ss_pred CcccCcccCCCCHHHHHHHHhc--ceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCccc
Q psy14743 2 AILDNDFMKNLDMTQIREIVDC--MYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPM 73 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~--~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~ 73 (86)
.|+++++|++|++++++.+++. +..+.|++|++|+++||.++++|+|.+|.|++++.+.++.. .-+++||++
T Consensus 19 ~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~ 98 (232)
T 1zyb_A 19 TLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQ 98 (232)
T ss_dssp TGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGG
T ss_pred HHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeeh
Confidence 4789999999999999999998 99999999999999999999999999999999986654432 246788888
Q ss_pred CCCCC
Q psy14743 74 QKVPG 78 (86)
Q Consensus 74 ~~~~~ 78 (86)
.-..+
T Consensus 99 ~~~~~ 103 (232)
T 1zyb_A 99 SLFGM 103 (232)
T ss_dssp GGSSS
T ss_pred HHhCC
Confidence 75543
No 9
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.41 E-value=6.5e-13 Score=82.46 Aligned_cols=76 Identities=22% Similarity=0.276 Sum_probs=65.0
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC------cccCccCcccCC
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP------GPMQKVPGPMQK 75 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~------~~~~~~~~~~~~ 75 (86)
.|+++++|++|++++++.++..+..+.|++|++|+++|+..+++|+|.+|.++++..+.++. -.-++++|++.-
T Consensus 6 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~ 85 (149)
T 2pqq_A 6 VLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSL 85 (149)
T ss_dssp GGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGG
T ss_pred HhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHh
Confidence 36889999999999999999999999999999999999999999999999999998654332 224677888754
Q ss_pred CC
Q psy14743 76 VP 77 (86)
Q Consensus 76 ~~ 77 (86)
..
T Consensus 86 ~~ 87 (149)
T 2pqq_A 86 FD 87 (149)
T ss_dssp TS
T ss_pred cC
Confidence 43
No 10
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.41 E-value=3.1e-13 Score=85.58 Aligned_cols=72 Identities=28% Similarity=0.427 Sum_probs=61.7
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC-cccCccCcccC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP-GPMQKVPGPMQ 74 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~-~~~~~~~~~~~ 74 (86)
|+++++|++|++++++.++..+..+.|++|++|+++|+..+++|+|.+|.|+++..+.... -.-+++||+++
T Consensus 40 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fGe~~ 112 (154)
T 3pna_A 40 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELA 112 (154)
T ss_dssp HHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTEEEEEECTTCEECCHH
T ss_pred HHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECCEEEEEecCCCEeeehH
Confidence 6789999999999999999999999999999999999999999999999999998543221 12456677754
No 11
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.40 E-value=7.3e-13 Score=87.19 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=60.4
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC------cccCccCcccC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP------GPMQKVPGPMQ 74 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~------~~~~~~~~~~~ 74 (86)
|+++++|++|++++++.+...++.+.|++|++|+++|+..+++|+|.+|.|+++..+.++. -.-+++||++.
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehh
Confidence 5789999999999999999999999999999999999999999999999999998755443 12456777754
No 12
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.38 E-value=7e-13 Score=82.08 Aligned_cols=76 Identities=21% Similarity=0.178 Sum_probs=63.5
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEec-CCCEEEcCCCccCeEEEEEccEEEEEeecccc-CcccCccCcccCCCCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYI-AGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV-PGPMQKVPGPMQKVPG 78 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~-~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~-~~~~~~~~~~~~~~~~ 78 (86)
|+++++|+.|++++++.|+..+..+.|+ +|++|+++|+.++++|+|++|.|++++.+.+. .-.-+++||++.-..+
T Consensus 18 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~~~l~~G~~fG~~~~~~~ 95 (134)
T 2d93_A 18 MHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENLFMGNSFGITPTLDK 95 (134)
T ss_dssp HHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCEEEECTTCEESCCSSSCC
T ss_pred HhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcEEEecCCCccChhHhcCC
Confidence 5788999999999999999999999999 99999999999999999999999998633221 1225667888765443
No 13
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.37 E-value=9.8e-13 Score=86.77 Aligned_cols=61 Identities=11% Similarity=0.005 Sum_probs=56.8
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV 62 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~ 62 (86)
.|+++++|++|++++++.+...+..+.|++|++|+++|+..+++|+|.+|.|+++..+.++
T Consensus 4 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G 64 (220)
T 3dv8_A 4 FENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEG 64 (220)
T ss_dssp -CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTS
T ss_pred hHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCC
Confidence 4789999999999999999999999999999999999999999999999999999866544
No 14
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.37 E-value=1.3e-12 Score=86.77 Aligned_cols=76 Identities=12% Similarity=0.108 Sum_probs=57.5
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcccCC
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPMQK 75 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~~~ 75 (86)
.|++.++|.+|++++++.++..++.+.|++|++|+++||..+++|+|.+|.|++++.+.++.. .-+++||++.-
T Consensus 12 ~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~ 91 (230)
T 3iwz_A 12 TVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGL 91 (230)
T ss_dssp ----------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGG
T ss_pred hhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhh
Confidence 478899999999999999999999999999999999999999999999999999986655432 35678888765
Q ss_pred CC
Q psy14743 76 VP 77 (86)
Q Consensus 76 ~~ 77 (86)
..
T Consensus 92 ~~ 93 (230)
T 3iwz_A 92 FI 93 (230)
T ss_dssp TS
T ss_pred hc
Confidence 43
No 15
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.36 E-value=8.2e-13 Score=86.80 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=61.9
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc--CcccCccCcccC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV--PGPMQKVPGPMQ 74 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~--~~~~~~~~~~~~ 74 (86)
|+++++|++++++.++.|+..+..+.|.+|++|+++||.++++|+|.+|.|+++..+.+. .-.-+++||+++
T Consensus 73 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~ 146 (198)
T 2ptm_A 73 VASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEIC 146 (198)
T ss_dssp HHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHH
T ss_pred HhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechHH
Confidence 568999999999999999999999999999999999999999999999999998643321 123567888864
No 16
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.36 E-value=1.9e-12 Score=84.88 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=63.1
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC------cccCccCcccC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP------GPMQKVPGPMQ 74 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~------~~~~~~~~~~~ 74 (86)
|+++++|++|++++++.++..+..+.|++|++|+++|+.++++|+|.+|.|+++..+..+. -.-+++||+++
T Consensus 41 L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ 118 (187)
T 3gyd_A 41 VNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMS 118 (187)
T ss_dssp HTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHHH
T ss_pred HhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeHH
Confidence 6889999999999999999999999999999999999999999999999999998764332 12456788766
No 17
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.36 E-value=1.3e-12 Score=85.09 Aligned_cols=71 Identities=10% Similarity=-0.076 Sum_probs=61.8
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCccc
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPM 73 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~ 73 (86)
++.+++|.+|++++++.+.+.+..+.|++|++|+++||+.+++|+|.+|.|+++..+.++.. .-++++|++
T Consensus 9 ~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 9 INHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 46778999999999999999999999999999999999999999999999999987654432 235677765
No 18
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.35 E-value=2.3e-12 Score=85.47 Aligned_cols=76 Identities=12% Similarity=0.116 Sum_probs=65.2
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc-CcccCccCcccCCCCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV-PGPMQKVPGPMQKVPG 78 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~-~~~~~~~~~~~~~~~~ 78 (86)
|.++++|++++++.++.|+..++.+.|.+|++|+++||.++++|+|.+|.|+++..+... .-.-+++||+++-..+
T Consensus 77 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~ 153 (212)
T 3ukn_A 77 LLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKE 153 (212)
T ss_dssp GGGSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCEEECSCCSSS
T ss_pred HHhcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECCeEEEEecCCCCcCcHHhccC
Confidence 457999999999999999999999999999999999999999999999999999754221 1235788998876654
No 19
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.35 E-value=1.3e-12 Score=86.57 Aligned_cols=74 Identities=11% Similarity=0.145 Sum_probs=64.1
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCcc------cCccCcccCCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGP------MQKVPGPMQKV 76 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~~------~~~~~~~~~~~ 76 (86)
|+++++|++|++++++.++..++.+.|++|++|+++|+..+++|+|.+|.|+++..+.++... -+++||++.-.
T Consensus 11 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~ 90 (227)
T 3dkw_A 11 LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMF 90 (227)
T ss_dssp HTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTTT
T ss_pred HhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHhc
Confidence 678999999999999999999999999999999999999999999999999999865543222 45678877644
No 20
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.34 E-value=1.7e-12 Score=89.64 Aligned_cols=77 Identities=58% Similarity=0.798 Sum_probs=65.3
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC-cccCccCcccCCCCC
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP-GPMQKVPGPMQKVPG 78 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~-~~~~~~~~~~~~~~~ 78 (86)
.|+++++|++|++++++.|+..+..+.|++|++||++||.++.+|+|++|.|++++.+..+. -.-+.+||+++-+.+
T Consensus 40 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g~~~~~~~~G~~fGe~~ll~~ 117 (299)
T 3shr_A 40 AILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILYN 117 (299)
T ss_dssp HHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETTEEEEEECTTCEESCSGGGTT
T ss_pred HHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECCEEEEEeCCCCeeeHhHHhcC
Confidence 36789999999999999999999999999999999999999999999999999987653221 225678888875443
No 21
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.34 E-value=1.4e-12 Score=80.50 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=61.8
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeec--ccc-----CcccCccCcccC
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSM--QKV-----PGPMQKVPGPMQ 74 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~--~~~-----~~~~~~~~~~~~ 74 (86)
.|+++++|++|++++++.|+..++.+.|++|++|+++||..+++|+|.+|.|++.... ... .-.-+++||+++
T Consensus 7 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~ 86 (137)
T 1wgp_A 7 GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDEL 86 (137)
T ss_dssp SCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHH
T ss_pred HHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHH
Confidence 4789999999999999999999999999999999999999999999999999976322 111 223577888876
No 22
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.33 E-value=1.1e-12 Score=86.52 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=61.8
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeecc-ccCcccCccCcccC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQ-KVPGPMQKVPGPMQ 74 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~-~~~~~~~~~~~~~~ 74 (86)
|+++++|++++++.++.|+..+..+.|.+|++|+++||.++.+|+|.+|.|+++..+. ...-.-+++||+++
T Consensus 74 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~ 146 (202)
T 3bpz_A 74 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEIC 146 (202)
T ss_dssp HHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEECHHH
T ss_pred HhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeEEEEcCCCEeccHH
Confidence 5789999999999999999999999999999999999999999999999999986432 12233567888764
No 23
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.33 E-value=1.9e-12 Score=86.50 Aligned_cols=72 Identities=8% Similarity=0.032 Sum_probs=62.9
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcccC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPMQ 74 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~~ 74 (86)
|+++++|++|++++++.++..+..+.|++|++|+++|+..+++|+|.+|.|+++..+.++.. .-+++||++.
T Consensus 13 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~ 90 (237)
T 3fx3_A 13 ARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAV 90 (237)
T ss_dssp HTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHH
T ss_pred HhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHH
Confidence 68899999999999999999999999999999999999999999999999999986654432 2456777764
No 24
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.32 E-value=1.7e-12 Score=86.48 Aligned_cols=76 Identities=9% Similarity=0.149 Sum_probs=64.7
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcccCC
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPMQK 75 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~~~ 75 (86)
.|+++++|++|++++++.++..++.+.|++|++|+++|++.+++|+|.+|.|+++..+.++.. .-+++||++.-
T Consensus 7 ~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~ 86 (231)
T 3e97_A 7 DLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAV 86 (231)
T ss_dssp HHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTT
T ss_pred HHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHH
Confidence 368899999999999999999999999999999999999999999999999999986644322 24677888765
Q ss_pred CC
Q psy14743 76 VP 77 (86)
Q Consensus 76 ~~ 77 (86)
..
T Consensus 87 ~~ 88 (231)
T 3e97_A 87 LA 88 (231)
T ss_dssp TC
T ss_pred hC
Confidence 44
No 25
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.31 E-value=4.3e-12 Score=88.98 Aligned_cols=73 Identities=10% Similarity=0.184 Sum_probs=63.5
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC-----cccCccCcccCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP-----GPMQKVPGPMQK 75 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~-----~~~~~~~~~~~~ 75 (86)
|+++++|++|++++++.|+..++.+.|++|++||++||.++++|+|.+|.|++++.+.++. -.-+++||+++-
T Consensus 15 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~l 92 (333)
T 4ava_A 15 LAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIAL 92 (333)
T ss_dssp HTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHHH
T ss_pred HhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHHh
Confidence 6889999999999999999999999999999999999999999999999999998765432 124567787653
No 26
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.30 E-value=1.7e-12 Score=86.28 Aligned_cols=72 Identities=15% Similarity=0.330 Sum_probs=63.2
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcccC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPMQ 74 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~~ 74 (86)
|+++++|++|++++++.++..+..+.|++|++|+++||+++++|+|.+|.|++++.+.++.. .-+++||++.
T Consensus 8 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~ 85 (227)
T 3d0s_A 8 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELS 85 (227)
T ss_dssp HTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHH
T ss_pred HhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHH
Confidence 68899999999999999999999999999999999999999999999999999986554322 2466788764
No 27
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.30 E-value=1.8e-12 Score=93.76 Aligned_cols=77 Identities=29% Similarity=0.391 Sum_probs=66.1
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC-cccCccCcccCCCCC
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP-GPMQKVPGPMQKVPG 78 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~-~~~~~~~~~~~~~~~ 78 (86)
.|+++++|++|++++++.|++.+..+.|++|++||++||.++++|+|++|.|++++.+..+. -.-+++||+++-..+
T Consensus 131 ~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~~v~~l~~G~~fGe~all~~ 208 (381)
T 4din_B 131 AISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFGELALIYG 208 (381)
T ss_dssp HHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTEEEEEEESSCCBCGGGGTSC
T ss_pred HHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCeEeeeCCCCCEEEchHHhcC
Confidence 36789999999999999999999999999999999999999999999999999998654322 225678998875543
No 28
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.30 E-value=3.5e-12 Score=87.51 Aligned_cols=77 Identities=29% Similarity=0.431 Sum_probs=64.6
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc-CcccCccCcccCCCCC
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV-PGPMQKVPGPMQKVPG 78 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~-~~~~~~~~~~~~~~~~ 78 (86)
.|+++++|++|++++++.++..+..+.|++|++|+++||.++.+|+|++|.|+++..+... .-.-+++||+++-..+
T Consensus 40 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~g~~~~~l~~G~~fGe~~l~~~ 117 (291)
T 2qcs_B 40 AIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYG 117 (291)
T ss_dssp HTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEETTEEEEEECTTCEECGGGGTCC
T ss_pred HHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEECCeEEEEcCCCCccchHHHhcC
Confidence 3788999999999999999999999999999999999999999999999999999844211 1125678888765543
No 29
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.28 E-value=6.1e-12 Score=83.85 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=63.8
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc--cCcccCccCcccCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK--VPGPMQKVPGPMQK 75 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~--~~~~~~~~~~~~~~ 75 (86)
+++.++|+.++++++..++..+..+.|++|++|+++|+.++.+|+|.+|.+++++.+.. ..-.-+++||+++-
T Consensus 127 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~ 201 (246)
T 3of1_A 127 LKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVAL 201 (246)
T ss_dssp HHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHH
T ss_pred HhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHH
Confidence 46789999999999999999999999999999999999999999999999999987653 12235678898763
No 30
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.28 E-value=9.8e-12 Score=90.63 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=64.7
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc--------ccCccCcccC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG--------PMQKVPGPMQ 74 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~--------~~~~~~~~~~ 74 (86)
|+++++|++|++++++.|+..+..+.|++|++||++||.++++|+|++|.|++++.+.++.+ .-+++||+++
T Consensus 44 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~ 123 (469)
T 1o7f_A 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESI 123 (469)
T ss_dssp HTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGG
T ss_pred HhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhh
Confidence 67899999999999999999999999999999999999999999999999999987654421 2467888877
Q ss_pred CCC
Q psy14743 75 KVP 77 (86)
Q Consensus 75 ~~~ 77 (86)
..
T Consensus 124 -l~ 125 (469)
T 1o7f_A 124 -LD 125 (469)
T ss_dssp -GG
T ss_pred -hC
Confidence 44
No 31
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.26 E-value=9.8e-12 Score=91.05 Aligned_cols=75 Identities=23% Similarity=0.285 Sum_probs=64.0
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC------cccCccCcccCC
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP------GPMQKVPGPMQK 75 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~------~~~~~~~~~~~~ 75 (86)
.|+++++|++|+++++..|++.+..+.|++|++||++||.++++|+|++|.|+++... .+. -.-+++||+++-
T Consensus 146 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~-~G~~~~v~~l~~G~~fGe~al 224 (416)
T 3tnp_B 146 ACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKC-DGVGRCVGNYDNRGSFGELAL 224 (416)
T ss_dssp HHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEEC-SSCEEEEEEEESCCEECGGGG
T ss_pred HHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEec-CCCEEEEEEecCCCEEeeHHH
Confidence 3678999999999999999999999999999999999999999999999999998732 111 225678898875
Q ss_pred CC
Q psy14743 76 VP 77 (86)
Q Consensus 76 ~~ 77 (86)
+.
T Consensus 225 l~ 226 (416)
T 3tnp_B 225 MY 226 (416)
T ss_dssp TS
T ss_pred hc
Confidence 54
No 32
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.25 E-value=7.7e-12 Score=83.34 Aligned_cols=70 Identities=14% Similarity=0.053 Sum_probs=58.0
Q ss_pred cCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcccC
Q psy14743 5 DNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPMQ 74 (86)
Q Consensus 5 ~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~~ 74 (86)
++++|++|++++++.+++.+..+.|++|++|+++||..+++|+|.+|.|++++.+.++.. .-+++||++.
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~ 89 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRP 89 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeeh
Confidence 578999999999999999999999999999999999999999999999999976544322 2456777764
No 33
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.22 E-value=3.7e-12 Score=84.44 Aligned_cols=71 Identities=10% Similarity=0.186 Sum_probs=60.3
Q ss_pred CCcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcc
Q psy14743 1 MAILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGP 72 (86)
Q Consensus 1 m~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~ 72 (86)
+.|+++++|++|++++++.+++.+..+.|++|++|+++||.++++|+|.+|.|+++ .+.++.. .-+++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~ 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC
Confidence 45889999999999999999999999999999999999999999999999999995 3333322 13566666
No 34
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.20 E-value=1.8e-11 Score=84.50 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=65.6
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeec-cccC------cccCccCcccCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSM-QKVP------GPMQKVPGPMQK 75 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~-~~~~------~~~~~~~~~~~~ 75 (86)
|++.++|+.++++++..++..+..+.|++|++|+++||.++.+|+|.+|.|++++.+ .++. -.-+++||+++-
T Consensus 159 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~l 238 (299)
T 3shr_A 159 LKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKAL 238 (299)
T ss_dssp HTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGG
T ss_pred HhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHH
Confidence 578899999999999999999999999999999999999999999999999999876 2221 235788999876
Q ss_pred CCC
Q psy14743 76 VPG 78 (86)
Q Consensus 76 ~~~ 78 (86)
+.+
T Consensus 239 l~~ 241 (299)
T 3shr_A 239 QGE 241 (299)
T ss_dssp SSS
T ss_pred hCC
Confidence 544
No 35
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.18 E-value=7.1e-11 Score=93.84 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=55.9
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
.|+++.+|++|++.++..|+.+++...|++|++||++||.+++||||++|+|.|...+..
T Consensus 43 ~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 43 RLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 378899999999999999999999999999999999999999999999999999875433
No 36
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.18 E-value=1e-10 Score=80.18 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=64.2
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc-------CcccCccCcccCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV-------PGPMQKVPGPMQK 75 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~-------~~~~~~~~~~~~~ 75 (86)
++++++|+.++++++..++..+..+.|++|++|+++|+.++.+|+|.+|+|++++..... .-.-+++||+++-
T Consensus 159 l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~l 238 (291)
T 2qcs_B 159 LSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIAL 238 (291)
T ss_dssp HHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGG
T ss_pred HhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHH
Confidence 467899999999999999999999999999999999999999999999999998754322 1235789999875
Q ss_pred CC
Q psy14743 76 VP 77 (86)
Q Consensus 76 ~~ 77 (86)
..
T Consensus 239 l~ 240 (291)
T 2qcs_B 239 LM 240 (291)
T ss_dssp TC
T ss_pred cC
Confidence 54
No 37
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.17 E-value=6.8e-11 Score=86.18 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=63.8
Q ss_pred cccCcccCCCCHHHHHHHHhcceE-EEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc--CcccCccCcccCCCCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYP-VEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV--PGPMQKVPGPMQKVPG 78 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~-~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~--~~~~~~~~~~~~~~~~ 78 (86)
|+++++|++|++++++.++..+.. +.|++|++|+++||.++++|+|.+|.|++++.+... .-.-+++||+++-+-+
T Consensus 339 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~ 417 (469)
T 1o7f_A 339 LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVND 417 (469)
T ss_dssp HTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCC
T ss_pred HhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCEEEEehhhcC
Confidence 567899999999999999999975 599999999999999999999999999999865421 1225678999876544
No 38
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.16 E-value=4.1e-12 Score=84.44 Aligned_cols=54 Identities=11% Similarity=0.006 Sum_probs=52.6
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEE
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVP 56 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~ 56 (86)
|+++++|++|++++++.++..+..+.|++|++|+++|++.+++|+|.+|.|+++
T Consensus 2 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 55 (222)
T 1ft9_A 2 PPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY 55 (222)
T ss_dssp CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE
T ss_pred cccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE
Confidence 688999999999999999999999999999999999999999999999999996
No 39
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.15 E-value=7.4e-11 Score=77.18 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=57.0
Q ss_pred cccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcccCCCC
Q psy14743 7 DFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPMQKVP 77 (86)
Q Consensus 7 ~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~~~~~ 77 (86)
.+++.+++++++.+++.+..+.|++|++|+++|+..+++|+|.+|.|+++..+.++.. .-+++||++.-.-
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~ 78 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE 78 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTS
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhc
Confidence 4778899999999999999999999999999999999999999999999987654432 3467788876543
No 40
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.14 E-value=1.6e-10 Score=84.55 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=64.6
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc------c------CcccCcc
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK------V------PGPMQKV 69 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~------~------~~~~~~~ 69 (86)
.++++++|+.|+++++..++..+..+.|++|++|+++|+.++++|+|.+|.|++++.+.. + .-.-+++
T Consensus 268 ~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~ 347 (416)
T 3tnp_B 268 FIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQY 347 (416)
T ss_dssp SGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCE
T ss_pred HHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCE
Confidence 467889999999999999999999999999999999999999999999999999876542 1 1224788
Q ss_pred CcccCCCCC
Q psy14743 70 PGPMQKVPG 78 (86)
Q Consensus 70 ~~~~~~~~~ 78 (86)
||+++-+-+
T Consensus 348 fGE~all~~ 356 (416)
T 3tnp_B 348 FGELALVTN 356 (416)
T ss_dssp ESGGGGTCC
T ss_pred ecHHHHhCC
Confidence 999876643
No 41
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.07 E-value=4.5e-10 Score=73.27 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=56.4
Q ss_pred CCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcccCCCCC
Q psy14743 12 LDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPMQKVPG 78 (86)
Q Consensus 12 L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~~~~~~ 78 (86)
|++++++.++..+..+.|++|++|+++|+..+++|+|.+|.|+++..+.++.. .-+++||++.-..+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~ 73 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK 73 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcC
Confidence 68999999999999999999999999999999999999999999986654422 24678888765443
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.04 E-value=8e-11 Score=85.05 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=64.5
Q ss_pred cccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC-------cccCccCcccCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP-------GPMQKVPGPMQK 75 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~-------~~~~~~~~~~~~ 75 (86)
++++++|..++++++..++..+..+.|++|++|+++|+.++++|+|.+|.|++++...... -.-+++||+++-
T Consensus 250 L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~al 329 (381)
T 4din_B 250 LSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIAL 329 (381)
T ss_dssp HHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGG
T ss_pred hhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHH
Confidence 5678999999999999999999999999999999999999999999999999998653221 225688999875
Q ss_pred CC
Q psy14743 76 VP 77 (86)
Q Consensus 76 ~~ 77 (86)
+-
T Consensus 330 l~ 331 (381)
T 4din_B 330 LL 331 (381)
T ss_dssp GS
T ss_pred hC
Confidence 53
No 43
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.03 E-value=3.4e-10 Score=88.06 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=61.6
Q ss_pred cccCcccCCCCHHHHHHHHhcce-EEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC--cccCccCcccC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMY-PVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP--GPMQKVPGPMQ 74 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~-~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~--~~~~~~~~~~~ 74 (86)
|+++++|++|++++++.++..+. .+.|++|++||++||.++++|+|++|.|++++.+.... -.-+++||+++
T Consensus 34 L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g~~il~~l~~Gd~fGe~a 108 (694)
T 3cf6_E 34 LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLA 108 (694)
T ss_dssp HTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEECHHH
T ss_pred HHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeCCEEEEEeCCCCEeehHH
Confidence 67899999999999999999997 78999999999999999999999999999998754111 12466788764
No 44
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.01 E-value=3.4e-11 Score=86.02 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred CcccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCcccCccCcccCCCC
Q psy14743 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQKVP 77 (86)
Q Consensus 2 ~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~~~~~~~~~~~~~~ 77 (86)
.++++++|+++++++++.+...++.+.|++||+|++|||.++++|+|.+|.++++..+ ...-.-++++|+++-..
T Consensus 229 ~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~~~l~~G~~fGe~~~l~ 303 (355)
T 3beh_A 229 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-PVELGPGAFFGEMALIS 303 (355)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred hhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-eeEECCCCEEeehHHhC
Confidence 4678999999999999999999999999999999999999999999999999998876 33445677888875443
No 45
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.01 E-value=7.2e-10 Score=74.46 Aligned_cols=68 Identities=7% Similarity=0.017 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHh--cceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCcc-----cCccCcccCCCC
Q psy14743 10 KNLDMTQIREIVD--CMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGP-----MQKVPGPMQKVP 77 (86)
Q Consensus 10 ~~L~~~~l~~l~~--~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~~-----~~~~~~~~~~~~ 77 (86)
+++++++++.++. .+..++|++|++|+++||..+++|+|.+|.|++++.+.++... -+++||++.-..
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~G~~~Ge~~~~~ 76 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFID 76 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEEESSEEEESBCTT
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEcCCCEecchhhhc
Confidence 4789999999985 5899999999999999999999999999999999865543221 367888876544
No 46
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.99 E-value=1.1e-09 Score=87.11 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=63.8
Q ss_pred cccCcccCCCCHHHHHHHHhcceEE-EecCCCEEEcCCCccCeEEEEEccEEEEEeeccccC--cccCccCcccCCCCC
Q psy14743 3 ILDNDFMKNLDMTQIREIVDCMYPV-EYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVP--GPMQKVPGPMQKVPG 78 (86)
Q Consensus 3 L~~~~lF~~L~~~~l~~l~~~~~~~-~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~--~~~~~~~~~~~~~~~ 78 (86)
|.++++|++|+...++.++..+... .+++|++|++|||.++.+|||++|+|.|++...... -..++.||+++-+-+
T Consensus 339 L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~v~~L~~Gd~FGElALL~~ 417 (999)
T 4f7z_A 339 LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVND 417 (999)
T ss_dssp HTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCS
T ss_pred HHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcceEEecCCCcccchhhccC
Confidence 5788999999999999999999754 568899999999999999999999999997654322 236889999986644
No 47
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=98.98 E-value=4.1e-10 Score=76.03 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=56.8
Q ss_pred CcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCcc------cCccCcc
Q psy14743 6 NDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGP------MQKVPGP 72 (86)
Q Consensus 6 ~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~~------~~~~~~~ 72 (86)
..-|..|++++++.++..+..+.|++|++|+++|++++++|+|.+|.|+++..+.++... -+++||+
T Consensus 14 ~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~ 86 (250)
T 3e6c_C 14 IIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK 86 (250)
T ss_dssp SSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC
T ss_pred ccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee
Confidence 334589999999999999999999999999999999999999999999999876554322 3556666
No 48
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=98.97 E-value=9.3e-10 Score=75.12 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=55.5
Q ss_pred ccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcccCCCCC
Q psy14743 8 FMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPMQKVPG 78 (86)
Q Consensus 8 lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~~~~~~ 78 (86)
++..|++++++.++..+..+.|++|++|+++|+.++++|+|.+|.|++++.+.++.. .-+++||++.-..+
T Consensus 53 ~~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~ 129 (260)
T 3kcc_A 53 LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE 129 (260)
T ss_dssp ------CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTST
T ss_pred HcCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCC
Confidence 346789999999999999999999999999999999999999999999987654322 25678888775543
No 49
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=98.93 E-value=5.5e-10 Score=73.92 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=54.3
Q ss_pred cCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcccCCCC
Q psy14743 5 DNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPMQKVP 77 (86)
Q Consensus 5 ~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~~~~~ 77 (86)
.-|.|...++.+++.+...+..+.|++|++|+++|+..+++|+|.+|.|++++.+.++.. .-+++||++.-..
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~ 81 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFS 81 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTS
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhc
Confidence 347889999999999999999999999999999999999999999999999986554322 2567888887543
No 50
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=98.71 E-value=2e-08 Score=67.56 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=50.4
Q ss_pred HHHHHHHHhcce---EEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcccC
Q psy14743 14 MTQIREIVDCMY---PVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPMQ 74 (86)
Q Consensus 14 ~~~l~~l~~~~~---~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~~ 74 (86)
++.++.|...+. .+.|++|++|+++|+..+++|+|.+|.|+++..+.++.. .-+++||++.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~ 99 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLS 99 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHH
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchH
Confidence 677888888888 999999999999999999999999999999987655432 2355677654
No 51
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.45 E-value=1.1e-07 Score=62.06 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=34.9
Q ss_pred HhcceEEEecCCCEEEcCCCcc--CeEEEEEccEEEEEeecccc
Q psy14743 21 VDCMYPVEYIAGSIIIKEGDVG--SIVYVMEGKKYKVPGSMQKV 62 (86)
Q Consensus 21 ~~~~~~~~~~~Ge~I~~eGd~~--d~~yiI~~G~v~V~~~~~~~ 62 (86)
.+.+..+.|++|++|+++||+. +++|+|.+|.|+++..+.++
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G 45 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEG 45 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTS
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCC
Confidence 4567889999999999999999 99999999999999876544
No 52
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.42 E-value=2.2e-07 Score=60.36 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=39.4
Q ss_pred EEecCCCEEEcCCCccCeEEEEEccEEEEEeeccccCc------ccCccCcccCCC
Q psy14743 27 VEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPG------PMQKVPGPMQKV 76 (86)
Q Consensus 27 ~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~~~------~~~~~~~~~~~~ 76 (86)
++|++|++|+++|++++++|+|.+|.|++++.+.++.. .-+++||+ .-.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~ 56 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EAL 56 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhh
Confidence 68999999999999999999999999999986554322 24567777 543
No 53
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=83.97 E-value=1.3 Score=29.05 Aligned_cols=45 Identities=11% Similarity=0.288 Sum_probs=35.5
Q ss_pred ccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEEE---ccEEE
Q psy14743 4 LDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVME---GKKYK 54 (86)
Q Consensus 4 ~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI~---~G~v~ 54 (86)
-++|+|.+++..+.++++.. ..|+.|++....++++-+.. +|.+.
T Consensus 12 I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit~Kv~d~~~~ 59 (178)
T 2xp1_A 12 YKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLVIKFASDVFV 59 (178)
T ss_dssp GGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEEEEEETTEEE
T ss_pred ccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEEEEECCCcEE
Confidence 46899999999999999886 25999999999988755443 55544
No 54
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=83.08 E-value=2.7 Score=27.76 Aligned_cols=37 Identities=14% Similarity=-0.013 Sum_probs=31.7
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
....+.+|+.+=..--+.+.+++|++|+++++..++.
T Consensus 40 ~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~~ 76 (227)
T 3rns_A 40 SLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENNK 76 (227)
T ss_dssp EEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSCE
T ss_pred EEEEECCCCccCccccCCCEEEEEEeCEEEEEECCEE
Confidence 5667899999988888899999999999999876654
No 55
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=80.72 E-value=2.8 Score=24.58 Aligned_cols=37 Identities=8% Similarity=-0.041 Sum_probs=28.9
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
....+++|..+-.---+.+.+++|++|++++...++.
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~ 75 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGAQ 75 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEECCEE
Confidence 4567788888766556677999999999999876653
No 56
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=78.34 E-value=4.1 Score=24.40 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=26.7
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
...++++|..+-.- ...+.+++|++|++.+...++.
T Consensus 43 ~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~g~~ 78 (119)
T 3lwc_A 43 GYGRYAPGQSLTET-MAVDDVMIVLEGRLSVSTDGET 78 (119)
T ss_dssp EEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEETTEE
T ss_pred EEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEECCEE
Confidence 34567888765543 3778999999999999875543
No 57
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=75.16 E-value=5.3 Score=22.75 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=25.5
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
....+++|..+-.---....+++|++|++.+...++.
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~~ 79 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQET 79 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCEE
Confidence 3446677776543333466899999999999876543
No 58
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=74.99 E-value=3.4 Score=23.77 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=23.7
Q ss_pred EecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 28 EYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 28 ~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
.+++|..+-.-....+.+++|++|++.+...++.
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~~ 77 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITFDDQK 77 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEETTEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEECCEE
Confidence 3556665443344567899999999999876643
No 59
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=72.74 E-value=5.7 Score=22.26 Aligned_cols=37 Identities=3% Similarity=-0.234 Sum_probs=26.6
Q ss_pred eEEEecCCCEEEcC--CCc-cCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIIIKE--GDV-GSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~~e--Gd~-~d~~yiI~~G~v~V~~~~~~ 61 (86)
....+++|..+-.. --. ...+++|++|++.+...++.
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~~ 63 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGHT 63 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCEE
Confidence 45677888876543 333 67899999999998876543
No 60
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=70.53 E-value=5.7 Score=26.13 Aligned_cols=38 Identities=8% Similarity=-0.028 Sum_probs=28.9
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV 62 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~ 62 (86)
....+++|+.+-.--.+.+.+++|++|++.+...++..
T Consensus 156 ~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~~~ 193 (227)
T 3rns_A 156 TIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGKPF 193 (227)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCEEE
Confidence 45677888887655556778999999999998766543
No 61
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=70.11 E-value=6.2 Score=26.31 Aligned_cols=46 Identities=9% Similarity=0.318 Sum_probs=35.2
Q ss_pred ccCcccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCcc-CeEEE---EEccEEE
Q psy14743 4 LDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVG-SIVYV---MEGKKYK 54 (86)
Q Consensus 4 ~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~-d~~yi---I~~G~v~ 54 (86)
-++|+|++++-.+.++.++.. ..||+||+....+ |++-+ +.+|.+.
T Consensus 6 I~HP~F~n~~~~qAe~~L~~~-----~~Ge~iIRPSSkg~dhLtvTwKv~d~v~q 55 (197)
T 3or8_A 6 INHPYYFPFNGKQAEDYLRSK-----ERGDFVIRQSSRGDDHLAITWKLDKDLFQ 55 (197)
T ss_dssp CCCTTEECCCHHHHHHHHTTS-----CTTCEEEEECSSCTTEEEEEEEEETTEEE
T ss_pred cCCCCcCCCCHHHHHHHHhcC-----CCCCEEEeeCCCCCCcEEEEEEECCCcEE
Confidence 478999999999999998853 7899999999985 44433 3455443
No 62
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=69.88 E-value=6.1 Score=22.94 Aligned_cols=37 Identities=8% Similarity=-0.122 Sum_probs=26.7
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
....+++|..+-.---....+++|++|++.+...++.
T Consensus 44 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~ 80 (126)
T 4e2g_A 44 NWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEET 80 (126)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTEE
T ss_pred EEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCEE
Confidence 4566778877654444467899999999999876543
No 63
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=68.88 E-value=8 Score=21.12 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=24.9
Q ss_pred eEEEecCCCEEEcCCCc-cCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIIIKEGDV-GSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~-~d~~yiI~~G~v~V~~~~~~ 61 (86)
....+++|..+-.---. .+.+++|++|++.+...++.
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~~ 68 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEE 68 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCEE
Confidence 34567788776433323 35699999999998776543
No 64
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=65.25 E-value=7.4 Score=22.14 Aligned_cols=37 Identities=11% Similarity=-0.069 Sum_probs=25.2
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
...++++|..+-.---....+++|++|++.+...++.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~ 73 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGVI 73 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTEE
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCEE
Confidence 4566778876433223366799999999998875543
No 65
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=63.59 E-value=9.5 Score=22.07 Aligned_cols=36 Identities=6% Similarity=-0.148 Sum_probs=24.4
Q ss_pred eEEEecCCCEEEcCCCcc-CeEEEEEccEEEEEe-ecc
Q psy14743 25 YPVEYIAGSIIIKEGDVG-SIVYVMEGKKYKVPG-SMQ 60 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~-d~~yiI~~G~v~V~~-~~~ 60 (86)
....+++|..+-.---.. ..+++|++|++.+.. .++
T Consensus 42 ~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~ 79 (125)
T 3h8u_A 42 VVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGI 79 (125)
T ss_dssp EEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTC
T ss_pred EEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCe
Confidence 445677777765443443 678889999999986 443
No 66
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=62.88 E-value=8.5 Score=25.68 Aligned_cols=46 Identities=9% Similarity=-0.045 Sum_probs=34.2
Q ss_pred ceEEEecCCCEEEc-CCCccCeEEEEEccEEEEEeeccccCcccCcc
Q psy14743 24 MYPVEYIAGSIIIK-EGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKV 69 (86)
Q Consensus 24 ~~~~~~~~Ge~I~~-eGd~~d~~yiI~~G~v~V~~~~~~~~~~~~~~ 69 (86)
+...++++|..+=. +-....+.++|++|+..+..+++..+-..+++
T Consensus 167 ~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~~~~l~~GD~ 213 (246)
T 1sfn_A 167 VSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDI 213 (246)
T ss_dssp EEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEEEEEETTCE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCEEEEcCCCCE
Confidence 46778899987653 44567789999999999988877665554443
No 67
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=60.20 E-value=5.6 Score=22.34 Aligned_cols=35 Identities=9% Similarity=-0.081 Sum_probs=23.2
Q ss_pred eEEEecCCCEEEcCCCccC-eEEEEEccEEEEEeec
Q psy14743 25 YPVEYIAGSIIIKEGDVGS-IVYVMEGKKYKVPGSM 59 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d-~~yiI~~G~v~V~~~~ 59 (86)
...++++|...-.---..+ .+++|++|++++...+
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~ 56 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPE 56 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETT
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCC
Confidence 4556777776422222334 4999999999998765
No 68
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=58.57 E-value=14 Score=21.38 Aligned_cols=45 Identities=9% Similarity=-0.153 Sum_probs=29.8
Q ss_pred CCHHHHHHHHh-cceEEEecCCCEEEcCCCccCeEEEEEccEEEEEee
Q psy14743 12 LDMTQIREIVD-CMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGS 58 (86)
Q Consensus 12 L~~~~l~~l~~-~~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~ 58 (86)
.....+...-. ......+.+|..-.. -..+.+++|++|++.+...
T Consensus 20 ~~~~~l~~~g~~~~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~ 65 (101)
T 1o5u_A 20 PTPEKLKELSVEKWPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE 65 (101)
T ss_dssp CCHHHHHHHTGGGSCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET
T ss_pred CCccEEeeCCceEEEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC
Confidence 34444444422 234567788876544 4467899999999999876
No 69
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=58.02 E-value=12 Score=23.41 Aligned_cols=36 Identities=14% Similarity=-0.046 Sum_probs=24.4
Q ss_pred EEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 26 PVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 26 ~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
...+++|..+-.---....+++|++|++.+...++.
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~~ 95 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDRV 95 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCEE
Confidence 445666665433333477899999999999876643
No 70
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=55.77 E-value=17 Score=22.05 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=25.8
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
....+++|..+-.---....+++|++|++.+...++.
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~ 87 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKP 87 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSC
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEECCEE
Confidence 4556777776543333457899999999999876654
No 71
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=55.31 E-value=15 Score=20.73 Aligned_cols=20 Identities=20% Similarity=0.009 Sum_probs=17.3
Q ss_pred CeEEEEEccEEEEEeecccc
Q psy14743 43 SIVYVMEGKKYKVPGSMQKV 62 (86)
Q Consensus 43 d~~yiI~~G~v~V~~~~~~~ 62 (86)
.+|.++.+|.++|++.+++.
T Consensus 30 nhFgv~e~g~iKIykyde~t 49 (72)
T 3kvp_A 30 NHFGVMEDGYIKIYEYNESR 49 (72)
T ss_dssp TEEEEEETTEEEEEEEETTT
T ss_pred CEEEEEeCCEEEEEEeCCCC
Confidence 57899999999999988654
No 72
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=54.60 E-value=13 Score=21.25 Aligned_cols=37 Identities=8% Similarity=-0.017 Sum_probs=23.5
Q ss_pred EEEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc
Q psy14743 26 PVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV 62 (86)
Q Consensus 26 ~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~ 62 (86)
...+++|..+-.---....+++|++|++.+...++..
T Consensus 31 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~ 67 (117)
T 2b8m_A 31 HIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEP 67 (117)
T ss_dssp EEEEETTCBCCCEECSSCEEEEEEESEEEEEETTSCC
T ss_pred EEEECCCCcCCCEeCCCcEEEEEEeCEEEEEECCEEE
Confidence 3445666543211224567889999999998776554
No 73
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=54.11 E-value=11 Score=22.05 Aligned_cols=37 Identities=11% Similarity=-0.040 Sum_probs=24.1
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
....+++|..+-.---....+++|++|++.+...++.
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~ 87 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGE 87 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEECSSCE
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEECCEE
Confidence 3445566655433233467899999999998876543
No 74
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=53.47 E-value=15 Score=25.36 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=36.5
Q ss_pred ceEEEecCCCEEE-cCCCccCeEEEEEccEEEEEeeccccCcccCcc
Q psy14743 24 MYPVEYIAGSIII-KEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKV 69 (86)
Q Consensus 24 ~~~~~~~~Ge~I~-~eGd~~d~~yiI~~G~v~V~~~~~~~~~~~~~~ 69 (86)
+...++++|..|= .+--.-++-++|++|+..+..++++.+-..++|
T Consensus 188 ~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~~~~~~V~~GD~ 234 (266)
T 4e2q_A 188 IHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDV 234 (266)
T ss_dssp EEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEETTEEEEEETTCE
T ss_pred EEEEEECCCcCcCCceEcccceEEEEEeceEEEEECCEEEEecCCCE
Confidence 3567799999984 566667799999999999998888777666655
No 75
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=53.07 E-value=19 Score=23.75 Aligned_cols=39 Identities=0% Similarity=-0.206 Sum_probs=27.7
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc
Q psy14743 24 MYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV 62 (86)
Q Consensus 24 ~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~ 62 (86)
+....+++|..+-.---+...+++|++|++.+...++..
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~~~~ 74 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDVTR 74 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEETTEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEECCEEE
Confidence 344557888776554455778999999999998766543
No 76
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=51.70 E-value=17 Score=24.73 Aligned_cols=46 Identities=15% Similarity=-0.039 Sum_probs=34.6
Q ss_pred ceEEEecCCCEEEc-CCCccCeEEEEEccEEEEEeeccccCcccCcc
Q psy14743 24 MYPVEYIAGSIIIK-EGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKV 69 (86)
Q Consensus 24 ~~~~~~~~Ge~I~~-eGd~~d~~yiI~~G~v~V~~~~~~~~~~~~~~ 69 (86)
+...++++|..|=. +-..-.+.++|++|+..+..++++.+-..+++
T Consensus 193 ~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~~~~~v~~GD~ 239 (278)
T 1sq4_A 193 VNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDF 239 (278)
T ss_dssp EEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTEEEEEETTCE
T ss_pred EEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECCEEEEeCCCCE
Confidence 46788999999874 44444578999999999988887766555554
No 77
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=51.29 E-value=23 Score=22.14 Aligned_cols=36 Identities=8% Similarity=-0.236 Sum_probs=24.1
Q ss_pred EEEecCCCEEEc--CCCccCeEEEEEccEEEEEeeccc
Q psy14743 26 PVEYIAGSIIIK--EGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 26 ~~~~~~Ge~I~~--eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
...+++|...-. --...+.+++|++|++.+...++.
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~~ 145 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQW 145 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCEE
Confidence 345677776542 223346899999999999876543
No 78
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=51.10 E-value=9.1 Score=23.88 Aligned_cols=37 Identities=5% Similarity=-0.123 Sum_probs=25.1
Q ss_pred eEEEecCCCEEE--cCCCccCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIII--KEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~--~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
...++++|.... ..-...+.+++|++|++.+...++.
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~~ 84 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQGE 84 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCEE
Confidence 456677777542 2223346899999999999876654
No 79
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=50.70 E-value=9.4 Score=23.25 Aligned_cols=34 Identities=3% Similarity=-0.176 Sum_probs=23.4
Q ss_pred EEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 26 PVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 26 ~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
..++++|..-.. ...+.+++|++|++.+...++.
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~g~~ 94 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHEGET 94 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEETTEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEECCEE
Confidence 456777732222 2467899999999999876543
No 80
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=48.60 E-value=15 Score=22.59 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=25.8
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEccEEEEE
Q psy14743 24 MYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVP 56 (86)
Q Consensus 24 ~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~ 56 (86)
+...++++|..+-.-.-.+...++|++|+....
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~ 78 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR 78 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEET
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc
Confidence 456778888887766566788899999999953
No 81
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=48.46 E-value=22 Score=21.00 Aligned_cols=37 Identities=8% Similarity=-0.084 Sum_probs=25.1
Q ss_pred eEEEecCCCEEEcCCCc-cCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIIIKEGDV-GSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~-~d~~yiI~~G~v~V~~~~~~ 61 (86)
....+++|..+-.---. ...+++|++|++.+...++.
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~ 97 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKD 97 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEECCEE
Confidence 35677888765322222 36799999999999876543
No 82
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=47.95 E-value=18 Score=20.89 Aligned_cols=38 Identities=0% Similarity=-0.153 Sum_probs=24.3
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV 62 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~ 62 (86)
....+++|...-.---....+++|++|+..+...++..
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~~~ 74 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRINDEDF 74 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEETTEEE
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEECCEEE
Confidence 34455666543322234667999999999998766543
No 83
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=47.94 E-value=30 Score=22.94 Aligned_cols=35 Identities=11% Similarity=0.008 Sum_probs=25.8
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
...++++|...-..- ++.+++|++|++.+...++.
T Consensus 53 ~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~~~ 87 (246)
T 1sfn_A 53 FTAEMPAGAQATESV--YQRFAFVLSGEVDVAVGGET 87 (246)
T ss_dssp EEEEECTTCEEECCS--SEEEEEEEEEEEEEECSSCE
T ss_pred EEEEECCCCcCCCCc--eeEEEEEEECEEEEEECCEE
Confidence 456778887665442 77899999999999876543
No 84
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=47.69 E-value=9.9 Score=24.12 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=27.6
Q ss_pred EcCCCccCeEEEEEccEEEEEeecc-ccC---cccCccCcccCCCCC
Q psy14743 36 IKEGDVGSIVYVMEGKKYKVPGSMQ-KVP---GPMQKVPGPMQKVPG 78 (86)
Q Consensus 36 ~~eGd~~d~~yiI~~G~v~V~~~~~-~~~---~~~~~~~~~~~~~~~ 78 (86)
++.-+..|.+|+|++|++.+.-.+. +.+ +...=-+|+|--||-
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPk 90 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPA 90 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECT
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCC
Confidence 3444678999999999999976532 111 222234677777763
No 85
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=47.16 E-value=11 Score=23.09 Aligned_cols=38 Identities=5% Similarity=-0.126 Sum_probs=24.8
Q ss_pred eEEEecCCCE-E-EcCCCccCeEEEEEccEEEEEeecccc
Q psy14743 25 YPVEYIAGSI-I-IKEGDVGSIVYVMEGKKYKVPGSMQKV 62 (86)
Q Consensus 25 ~~~~~~~Ge~-I-~~eGd~~d~~yiI~~G~v~V~~~~~~~ 62 (86)
...++++|.. + ...-...+.+++|++|++.+...++..
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~ 88 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQY 88 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTEEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCEEE
Confidence 3456677763 1 122224678999999999998766443
No 86
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=47.07 E-value=20 Score=24.09 Aligned_cols=39 Identities=10% Similarity=-0.087 Sum_probs=27.6
Q ss_pred eEEEecCCCEEEc-CCCccCeEEEEEccEEEEEeeccccC
Q psy14743 25 YPVEYIAGSIIIK-EGDVGSIVYVMEGKKYKVPGSMQKVP 63 (86)
Q Consensus 25 ~~~~~~~Ge~I~~-eGd~~d~~yiI~~G~v~V~~~~~~~~ 63 (86)
...++++|..+-. .--..+.+++|++|++.+...++...
T Consensus 185 ~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~~~~ 224 (274)
T 1sef_A 185 HILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEWYP 224 (274)
T ss_dssp EEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTEEEE
T ss_pred EEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCEEEE
Confidence 4557788876633 33356789999999999987765443
No 87
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=46.40 E-value=18 Score=23.86 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=26.2
Q ss_pred EEEecC-CCEEEcCCCccCeEEEEEccEEEEEeecccc
Q psy14743 26 PVEYIA-GSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV 62 (86)
Q Consensus 26 ~~~~~~-Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~ 62 (86)
...+++ |..+-.---..+.+++|++|++.+...++..
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~ 186 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGCTV 186 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEETTEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEECCEEE
Confidence 345777 7665544445678999999999998766543
No 88
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=46.18 E-value=12 Score=23.34 Aligned_cols=35 Identities=9% Similarity=-0.099 Sum_probs=22.4
Q ss_pred EEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 27 VEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 27 ~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
..+++|..+-.---....+++|++|++++...++.
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g~~ 83 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLVGETI 83 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEETTEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEECCEE
Confidence 34455554332223456788999999999876644
No 89
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=45.67 E-value=37 Score=18.65 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=22.4
Q ss_pred eEEEecCCCEEEcCCCc-cCeE-EEEEccEEEEEee
Q psy14743 25 YPVEYIAGSIIIKEGDV-GSIV-YVMEGKKYKVPGS 58 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~-~d~~-yiI~~G~v~V~~~ 58 (86)
....+.+|..+-.---. ...+ ++|++|++.+...
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~ 71 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGD 71 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECG
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeC
Confidence 34567788776432222 2455 7999999999876
No 90
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=45.18 E-value=15 Score=21.27 Aligned_cols=22 Identities=0% Similarity=-0.186 Sum_probs=18.2
Q ss_pred CccCeEEEEEccEEEEEeeccc
Q psy14743 40 DVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 40 d~~d~~yiI~~G~v~V~~~~~~ 61 (86)
...+.+++|++|++++...++.
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~ 72 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDT 72 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCS
T ss_pred CCccEEEEEEeCeEEEEECCEE
Confidence 4577899999999999877654
No 91
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=44.39 E-value=16 Score=22.87 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=23.9
Q ss_pred eEEEecCCCEEE---cCCCccCeEEEEEccEEEEEeec
Q psy14743 25 YPVEYIAGSIII---KEGDVGSIVYVMEGKKYKVPGSM 59 (86)
Q Consensus 25 ~~~~~~~Ge~I~---~eGd~~d~~yiI~~G~v~V~~~~ 59 (86)
....+++|...- .--..++.+++|++|++.+...+
T Consensus 120 ~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~ 157 (198)
T 2bnm_A 120 LVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGD 157 (198)
T ss_dssp EEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESC
T ss_pred EEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECC
Confidence 344667776543 12334578999999999998776
No 92
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=43.25 E-value=48 Score=19.81 Aligned_cols=35 Identities=11% Similarity=-0.122 Sum_probs=23.0
Q ss_pred EEecCCCEEEc-CCCccCeEEEEEccEEEEEeeccc
Q psy14743 27 VEYIAGSIIIK-EGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 27 ~~~~~Ge~I~~-eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
..+++|..+-. .-...+.+++|++|++.+...+..
T Consensus 48 ~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~ 83 (148)
T 2oa2_A 48 MSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQ 83 (148)
T ss_dssp EEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBT
T ss_pred EEECCCCccCceECCCCcEEEEEEeCEEEEEECCcc
Confidence 35566654322 222345899999999999887765
No 93
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=43.12 E-value=17 Score=21.07 Aligned_cols=37 Identities=14% Similarity=-0.028 Sum_probs=22.6
Q ss_pred eEEEecCCCEEE--cCCCccCeEEEEEccEEEEEeeccc
Q psy14743 25 YPVEYIAGSIII--KEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 25 ~~~~~~~Ge~I~--~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
....+++|..+- ..-+..+.+|+|++|++.+...++.
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~~ 67 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGEK 67 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCEE
Confidence 345667776542 2222334567799999998776543
No 94
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=42.57 E-value=12 Score=23.74 Aligned_cols=35 Identities=9% Similarity=-0.160 Sum_probs=22.0
Q ss_pred EEecCCCEEEcCCCccCeEEEEEccEEEEEeeccc
Q psy14743 27 VEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 27 ~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~ 61 (86)
..+.+|..+-.---....+++|++|++.+...++.
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~~ 92 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRAV 92 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEETTEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEECCEE
Confidence 34555554332223456788899999999876543
No 95
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=42.31 E-value=18 Score=23.30 Aligned_cols=34 Identities=6% Similarity=-0.099 Sum_probs=22.8
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEee
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGS 58 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~ 58 (86)
....+++|...-.--.....+++|++|++.+...
T Consensus 82 ~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld 115 (172)
T 3es1_A 82 RVVDMLPGKESPMHRTNSIDYGIVLEGEIELELD 115 (172)
T ss_dssp EEEEECTTCBCCCBCCSEEEEEEEEESCEEEECG
T ss_pred EEEEECCCCCCCCeecCceEEEEEEeCEEEEEEC
Confidence 4556777764322223345688999999999876
No 96
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=41.83 E-value=12 Score=24.07 Aligned_cols=22 Identities=14% Similarity=-0.001 Sum_probs=17.6
Q ss_pred ccCeEEEEEccEEEEEeecccc
Q psy14743 41 VGSIVYVMEGKKYKVPGSMQKV 62 (86)
Q Consensus 41 ~~d~~yiI~~G~v~V~~~~~~~ 62 (86)
.++.+++|++|++.+...++..
T Consensus 109 ~gEE~~yVLeG~v~vtl~g~~~ 130 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVCKNKF 130 (166)
T ss_dssp SEEEEEEEEESEEEEEETTEEE
T ss_pred CceEEEEEEEeEEEEEECCEEE
Confidence 4677999999999998776533
No 97
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=41.74 E-value=14 Score=27.03 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=22.5
Q ss_pred EEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc
Q psy14743 27 VEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV 62 (86)
Q Consensus 27 ~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~ 62 (86)
..+++|+..-.---..+.+|+|++|+..+...++..
T Consensus 299 ~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V~ge~~ 334 (394)
T 3bu7_A 299 QMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGKRF 334 (394)
T ss_dssp EEECTTCBCCCEEESSCEEEEEEECCEEEEETTEEE
T ss_pred EEECCCCcCCCcccCCcEEEEEEeCeEEEEECCEEE
Confidence 344555544333334667999999999777655443
No 98
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=40.29 E-value=37 Score=22.90 Aligned_cols=36 Identities=6% Similarity=-0.168 Sum_probs=24.8
Q ss_pred eEEEecCCCEEE-cCCCccCeEEEEEccEEEEEeecc
Q psy14743 25 YPVEYIAGSIII-KEGDVGSIVYVMEGKKYKVPGSMQ 60 (86)
Q Consensus 25 ~~~~~~~Ge~I~-~eGd~~d~~yiI~~G~v~V~~~~~ 60 (86)
....+.+|...- ..-+..+.+++|++|++++...++
T Consensus 49 ~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~ 85 (337)
T 1y3t_A 49 VLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGE 85 (337)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTE
T ss_pred EEEEeCCCCCCCceeCCCceEEEEEEECEEEEEECCE
Confidence 345678877653 333337889999999999886543
No 99
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=39.86 E-value=17 Score=22.28 Aligned_cols=35 Identities=9% Similarity=-0.085 Sum_probs=22.7
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeec
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSM 59 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~ 59 (86)
....+++|..+-.---....+++|++|++.+...+
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~ 78 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGS 78 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECC
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECC
Confidence 34556777653211113456899999999998766
No 100
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=39.46 E-value=16 Score=22.02 Aligned_cols=30 Identities=10% Similarity=-0.075 Sum_probs=20.3
Q ss_pred EEecCCCEEEcCCCccCeEEEEEccEEEEEe
Q psy14743 27 VEYIAGSIIIKEGDVGSIVYVMEGKKYKVPG 57 (86)
Q Consensus 27 ~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~ 57 (86)
....+|..-....+ .+.+++|++|++.+..
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~ 83 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVD 83 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEEC
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEE
Confidence 34455555443322 3789999999999987
No 101
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=39.32 E-value=44 Score=23.31 Aligned_cols=34 Identities=9% Similarity=-0.182 Sum_probs=23.6
Q ss_pred eEEEecCCCEEEcCCCcc-CeEEEEEccEEEEEee
Q psy14743 25 YPVEYIAGSIIIKEGDVG-SIVYVMEGKKYKVPGS 58 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~-d~~yiI~~G~v~V~~~ 58 (86)
....+++|..+-..-... +.+++|++|++++...
T Consensus 260 ~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~ 294 (385)
T 1j58_A 260 ALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVF 294 (385)
T ss_dssp EEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEE
T ss_pred EEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEE
Confidence 445677777654332334 7899999999998765
No 102
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=39.11 E-value=23 Score=23.55 Aligned_cols=39 Identities=10% Similarity=-0.081 Sum_probs=26.7
Q ss_pred eEEEecCCCEEEc-CCCccCeEEEEEccEEEEEeeccccC
Q psy14743 25 YPVEYIAGSIIIK-EGDVGSIVYVMEGKKYKVPGSMQKVP 63 (86)
Q Consensus 25 ~~~~~~~Ge~I~~-eGd~~d~~yiI~~G~v~V~~~~~~~~ 63 (86)
...++++|..+-. .-...+.+++|++|++.+...++...
T Consensus 182 ~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~~~ 221 (261)
T 1rc6_A 182 HILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIP 221 (261)
T ss_dssp EEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSCEEE
T ss_pred EEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCEEEE
Confidence 5667788876432 22235689999999999987665443
No 103
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=37.80 E-value=34 Score=22.08 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=26.7
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEccEEE
Q psy14743 24 MYPVEYIAGSIIIKEGDVGSIVYVMEGKKYK 54 (86)
Q Consensus 24 ~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~ 54 (86)
+...+|++|..+-.-.-.+..+++|++|.+.
T Consensus 127 v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~ 157 (195)
T 2q1z_B 127 ARLLWIPGGQAVPDHGHRGLELTLVLQGAFR 157 (195)
T ss_dssp EEEEEECTTCBCCCCCCSSCEEEEEEESEEE
T ss_pred EEEEEECCCCCCCCcCCCCeEEEEEEEEEEE
Confidence 3567889999998888889999999999977
No 104
>2lyd_B Pacman protein; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=36.28 E-value=15 Score=17.87 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=10.2
Q ss_pred CccCcccCCCCCc
Q psy14743 67 QKVPGPMQKVPGP 79 (86)
Q Consensus 67 ~~~~~~~~~~~~~ 79 (86)
--+||-|-|+|-|
T Consensus 12 ap~p~qmp~lp~p 24 (38)
T 2lyd_B 12 APFPGQMPNLPKP 24 (38)
T ss_dssp CCCTTCCCCCCCC
T ss_pred CCCcccccCCCCC
Confidence 4578888888877
No 105
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=36.08 E-value=21 Score=24.64 Aligned_cols=36 Identities=6% Similarity=-0.160 Sum_probs=24.8
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEee-cc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGS-MQ 60 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~-~~ 60 (86)
...++++|..-=.....++.+.+|++|++.+... ++
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~ 109 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSS 109 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CC
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCc
Confidence 4567777765322234567899999999999886 44
No 106
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=36.06 E-value=60 Score=18.34 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=26.3
Q ss_pred cccCccc-CCCCHHHHHHHHhcceEEEecCCCEEEcCCCcc
Q psy14743 3 ILDNDFM-KNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVG 42 (86)
Q Consensus 3 L~~~~lF-~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~ 42 (86)
|...++| ..++.++.+.++... +.|..++++-+..
T Consensus 6 l~~~~Wyhg~isR~~Ae~lL~~~-----~~G~FLVR~S~~~ 41 (100)
T 1r1p_A 6 IEFPEWFHEGLSRHQAENLLMGK-----DIGFFIIRASQSS 41 (100)
T ss_dssp CTTTTTSCTTCCHHHHHHHHHTS-----CTTBEEEEECSSS
T ss_pred eccCCccccCCCHHHHHHHhcCC-----CCCEEEEEecCCC
Confidence 4555655 478999999988653 6899999987653
No 107
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=34.98 E-value=20 Score=22.64 Aligned_cols=21 Identities=5% Similarity=-0.203 Sum_probs=16.4
Q ss_pred ccCeEEEEEccEEEEEeeccc
Q psy14743 41 VGSIVYVMEGKKYKVPGSMQK 61 (86)
Q Consensus 41 ~~d~~yiI~~G~v~V~~~~~~ 61 (86)
..+.+++|++|++.+...++.
T Consensus 83 ~~eE~~yVLeG~~~l~i~g~~ 103 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIIIDGRK 103 (151)
T ss_dssp SSEEEEEEEEEEEEEEETTEE
T ss_pred CCcEEEEEEEeEEEEEECCEE
Confidence 466788899999999875543
No 108
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=34.96 E-value=41 Score=22.65 Aligned_cols=32 Identities=6% Similarity=-0.163 Sum_probs=21.2
Q ss_pred EEecCCCEEEcCCCccCeEEEEEccEEEEEee
Q psy14743 27 VEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGS 58 (86)
Q Consensus 27 ~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~ 58 (86)
..+.+|..+=.=--+.+.+|+|++|.+++...
T Consensus 137 v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~ 168 (217)
T 4b29_A 137 GYWGPGLDYGWHEHLPEELYSVVSGRALFHLR 168 (217)
T ss_dssp EEECSSCEEEEEECSSEEEEEEEEECEEEEET
T ss_pred EEECCCCcCCCCCCCCceEEEEEeCCEEEEEC
Confidence 33444444332234578999999999998766
No 109
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=34.67 E-value=25 Score=19.08 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=15.6
Q ss_pred cCeEEEEEccEEEEEeecc
Q psy14743 42 GSIVYVMEGKKYKVPGSMQ 60 (86)
Q Consensus 42 ~d~~yiI~~G~v~V~~~~~ 60 (86)
...+++|++|++.+...++
T Consensus 50 ~~e~~~v~~G~~~~~~~~~ 68 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFRDQ 68 (102)
T ss_dssp CCEEEEEEESEEEEECSSC
T ss_pred CcEEEEEEeCEEEEEECCE
Confidence 3789999999999886654
No 110
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=32.15 E-value=23 Score=23.21 Aligned_cols=38 Identities=5% Similarity=-0.143 Sum_probs=23.7
Q ss_pred ccCeEEEEEccEEEEEeeccccCcccCccCcccCCCCC
Q psy14743 41 VGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQKVPG 78 (86)
Q Consensus 41 ~~d~~yiI~~G~v~V~~~~~~~~~~~~~~~~~~~~~~~ 78 (86)
+.+.+|++++|.+.+...+........=-.|+|--+|.
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~ 91 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPP 91 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECT
T ss_pred CCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCC
Confidence 57899999999999987653112233333455555543
No 111
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=32.05 E-value=22 Score=19.93 Aligned_cols=18 Identities=11% Similarity=-0.121 Sum_probs=15.6
Q ss_pred cCeEEEEEccEEEEEeec
Q psy14743 42 GSIVYVMEGKKYKVPGSM 59 (86)
Q Consensus 42 ~d~~yiI~~G~v~V~~~~ 59 (86)
.+.+++|++|++.+...+
T Consensus 48 ~~E~~~Vl~G~~~~~~~~ 65 (107)
T 2i45_A 48 SDKVLFAVEGDMAVDFAD 65 (107)
T ss_dssp CCEEEEESSSCEEEEETT
T ss_pred CCEEEEEEeCEEEEEECC
Confidence 378999999999998776
No 112
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=30.32 E-value=95 Score=18.89 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHhcceEEEecCCCEEEcCCCccC
Q psy14743 10 KNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGS 43 (86)
Q Consensus 10 ~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d 43 (86)
.+|+.+++...+..--..-..+|++-++-|+.+.
T Consensus 78 sgl~~~~l~~~LP~eltlWvDPgeVs~R~GE~g~ 111 (120)
T 3e9v_A 78 IGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGS 111 (120)
T ss_dssp TTCCHHHHHHHSCTTEEEEEETTEEEEEESTTSC
T ss_pred hCCCHHHHHHhCCcccEEEECCCEEEEEecCCCe
Confidence 5677888877666666777899999999999763
No 113
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=29.59 E-value=38 Score=24.48 Aligned_cols=39 Identities=3% Similarity=-0.271 Sum_probs=27.2
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEE-EEeeccccC
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYK-VPGSMQKVP 63 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~-V~~~~~~~~ 63 (86)
....+.+|+.+-.---..+.+|+|++|+-. +..++++.+
T Consensus 106 ~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~~~~ 145 (368)
T 3nw4_A 106 AIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPVR 145 (368)
T ss_dssp EEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETTEEEE
T ss_pred EEEEECCCCccCceecccceEEEEEecceEEEEECCEEEE
Confidence 456778888766555567789999999985 555554443
No 114
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=28.64 E-value=37 Score=19.71 Aligned_cols=18 Identities=6% Similarity=-0.112 Sum_probs=15.4
Q ss_pred cCeEEEEEccEEEEEeec
Q psy14743 42 GSIVYVMEGKKYKVPGSM 59 (86)
Q Consensus 42 ~d~~yiI~~G~v~V~~~~ 59 (86)
.+.+++|++|++.+...+
T Consensus 64 ~~E~~~vl~G~~~~~~~~ 81 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEYED 81 (134)
T ss_dssp SCEEEEEEESEEEEEETT
T ss_pred CcEEEEEEeCEEEEEECC
Confidence 378999999999998766
No 115
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=28.51 E-value=73 Score=21.85 Aligned_cols=33 Identities=3% Similarity=-0.136 Sum_probs=23.9
Q ss_pred eEEEecCCCEEEcCCCc-cCeEEEEEccEEEEEe
Q psy14743 25 YPVEYIAGSIIIKEGDV-GSIVYVMEGKKYKVPG 57 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~-~d~~yiI~~G~v~V~~ 57 (86)
....+++|..+-..-.. .+.+++|++|++.+..
T Consensus 237 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v 270 (361)
T 2vqa_A 237 ALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTV 270 (361)
T ss_dssp EEEEECTTCEEEEEECSSCCEEEEEEESCEEEEE
T ss_pred EEEEECCCcccccccCCCCCEEEEEEeCEEEEEE
Confidence 45677888876432223 4789999999999876
No 116
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=27.74 E-value=31 Score=18.09 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.5
Q ss_pred CcccCCCCHHHHHHHHhcc
Q psy14743 6 NDFMKNLDMTQIREIVDCM 24 (86)
Q Consensus 6 ~~lF~~L~~~~l~~l~~~~ 24 (86)
.|-|..|++++++.|++.+
T Consensus 57 Mp~~~~Ls~~ei~~l~~yl 75 (79)
T 2d0s_A 57 MPPHPQVAEADIEKIVRWV 75 (79)
T ss_dssp BCCCTTSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 4557889999999998865
No 117
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A
Probab=27.64 E-value=83 Score=17.44 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=33.0
Q ss_pred cccCccc-CCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEE---EEEccEEEEEe
Q psy14743 3 ILDNDFM-KNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVY---VMEGKKYKVPG 57 (86)
Q Consensus 3 L~~~~lF-~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~y---iI~~G~v~V~~ 57 (86)
|...++| ..++.++.+.++.. -+.|..++++-+....-| +...|.++=++
T Consensus 2 L~~~~Wyhg~isr~~Ae~lL~~-----~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~ 55 (98)
T 3us4_A 2 LSLMPWFHGKISGQEAVQQLQP-----PEDGLFLVRESARHPGDYVLCVSFGRDVIHYR 55 (98)
T ss_dssp CTTCTTBCCSCCHHHHHHHTCS-----CCTTCEEEEECSSSTTCEEEEEEETTEEEEEE
T ss_pred CccCcccCCCCCHHHHHHHccC-----CCCcEEEEEeCCCCCCcEEEEEEECCceEEEE
Confidence 4556665 57899999988753 278999999876544333 33566665443
No 118
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=26.21 E-value=38 Score=21.28 Aligned_cols=35 Identities=0% Similarity=-0.050 Sum_probs=25.2
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEccEEEEEee
Q psy14743 24 MYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGS 58 (86)
Q Consensus 24 ~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~ 58 (86)
+....+++|...-.--..++.+++|++|++++...
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~ 77 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLV 77 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEE
Confidence 35667888877544433467899999999998654
No 119
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=24.73 E-value=38 Score=23.93 Aligned_cols=31 Identities=10% Similarity=-0.064 Sum_probs=21.7
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEE
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKV 55 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V 55 (86)
....+++|...-.---....+++|++|+..+
T Consensus 103 ~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~ 133 (354)
T 2d40_A 103 GLQLIMPGEVAPSHRHNQSALRFIVEGKGAF 133 (354)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEECSSCE
T ss_pred EEEEECCCCCcCCeecCcceEEEEEEEEEEE
Confidence 4566788877633223467899999999877
No 120
>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A
Probab=24.46 E-value=1.1e+02 Score=17.91 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=32.5
Q ss_pred cccCccc-CCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEE---EccEEEEE
Q psy14743 3 ILDNDFM-KNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVM---EGKKYKVP 56 (86)
Q Consensus 3 L~~~~lF-~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI---~~G~v~V~ 56 (86)
|...++| ..++.++.+.++... +.|..++++-+....-|++ ..|.++=+
T Consensus 19 l~~~~WyhG~isR~eAe~lL~~~-----~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~ 71 (122)
T 2lnw_A 19 YTAYPWFAGNMERQQTDNLLKSH-----ASGTYLIRERPAEAERFAISIKFNDEVKHI 71 (122)
T ss_dssp STTSTTBCCSCCHHHHHHHHHHS-----CTTBEEEEECCCSSEEEEEEEECSSCEEEE
T ss_pred cccCcCCCcCCCHHHHHHHhcCC-----CCCeEEEEeCCCCCCcEEEEEEeCCcEEEE
Confidence 4445554 588999999988652 6999999988755544433 34555433
No 121
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=24.16 E-value=46 Score=19.62 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=28.4
Q ss_pred ccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEE---EEEccEEEEEe
Q psy14743 8 FMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVY---VMEGKKYKVPG 57 (86)
Q Consensus 8 lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~y---iI~~G~v~V~~ 57 (86)
++..++.++.+.++. +.|..++++-+....-| +..+|.++=++
T Consensus 20 yhG~isR~eAe~lL~-------~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~ 65 (116)
T 2kk6_A 20 YHGAIPRIEAQELLK-------KQGDFLVRESHGKPGEYVLSVYSDGQRRHFI 65 (116)
T ss_dssp EEESCCHHHHHHTCC-------STTCEEEEECTTCTTCEEEEEEETTEEEEEE
T ss_pred ccCCCCHHHHHHHhc-------cCCcEEEEECCCCCCcEEEEEEECCeEEEEE
Confidence 345889999888875 58999999887543222 33456655443
No 122
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=24.08 E-value=43 Score=20.18 Aligned_cols=32 Identities=6% Similarity=-0.208 Sum_probs=21.5
Q ss_pred EEecCCCEEEcCCCccCeEEEEEccEEEEEeec
Q psy14743 27 VEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSM 59 (86)
Q Consensus 27 ~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~ 59 (86)
....+|..-+.. +..+.++.|++|++.+.-.+
T Consensus 47 We~tPG~~~~~~-~~~~E~~~iLeG~~~lt~dd 78 (116)
T 3es4_A 47 WMAEPGIYNYAG-RDLEETFVVVEGEALYSQAD 78 (116)
T ss_dssp EEECSEEEEECC-CSEEEEEEEEECCEEEEETT
T ss_pred EecCCceeECee-CCCcEEEEEEEeEEEEEeCC
Confidence 344555554444 33457999999999998754
No 123
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=23.92 E-value=26 Score=19.92 Aligned_cols=35 Identities=11% Similarity=-0.024 Sum_probs=23.8
Q ss_pred eEEEecCCCEEEcCCCccC-eEEEEEccEEEEEeec
Q psy14743 25 YPVEYIAGSIIIKEGDVGS-IVYVMEGKKYKVPGSM 59 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d-~~yiI~~G~v~V~~~~ 59 (86)
.+.++++|+.+=..--..+ ..|+|.+|.+++...+
T Consensus 20 ~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d 55 (98)
T 3lag_A 20 TEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPD 55 (98)
T ss_dssp EEEEECTTEECCSEECCSCEEEEESSCBC-CEECTT
T ss_pred EEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCC
Confidence 3566788887765544444 5788889999997655
No 124
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=23.67 E-value=26 Score=20.47 Aligned_cols=14 Identities=0% Similarity=-0.235 Sum_probs=10.2
Q ss_pred CeEEEEEccEEEEE
Q psy14743 43 SIVYVMEGKKYKVP 56 (86)
Q Consensus 43 d~~yiI~~G~v~V~ 56 (86)
..+++|++|++.+.
T Consensus 60 ~e~~~vl~G~~~~~ 73 (145)
T 3ht1_A 60 EHEIYVLEGSMGLV 73 (145)
T ss_dssp CEEEEEEEECEEEE
T ss_pred ceEEEEEEeEEEEE
Confidence 34456888888887
No 125
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=23.43 E-value=49 Score=23.18 Aligned_cols=28 Identities=7% Similarity=-0.052 Sum_probs=22.0
Q ss_pred CCEEEcCCCccCeEEEEEccEEEEEeec
Q psy14743 32 GSIIIKEGDVGSIVYVMEGKKYKVPGSM 59 (86)
Q Consensus 32 Ge~I~~eGd~~d~~yiI~~G~v~V~~~~ 59 (86)
|+.+=.=-.+.+.+++|++|+++|...+
T Consensus 262 g~~~~~h~~~~~~~~~vleG~~~i~i~g 289 (350)
T 1juh_A 262 TVTVPTWSFPGACAFQVQEGRVVVQIGD 289 (350)
T ss_dssp TSCCCCBCCSSCEEEEEEESCEEEEETT
T ss_pred CCCCCcccCCCcEEEEEEeeEEEEEECC
Confidence 4445444567889999999999999876
No 126
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=23.27 E-value=1.3e+02 Score=20.76 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=31.4
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEccEEEEEeecc
Q psy14743 24 MYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQ 60 (86)
Q Consensus 24 ~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~ 60 (86)
+....+++|+.+-.+-+.-+...++++|.+.|...++
T Consensus 31 f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~~g~ 67 (270)
T 2qjv_A 31 FDVWQLXAGESITLPSDERERCLVLVAGLASVXAADS 67 (270)
T ss_dssp EEEEEECTTCEEEECCSSEEEEEEEEESCEEEEETTE
T ss_pred EEEEEecCCCEEEecCCCcEEEEEEecceEEEEECCE
Confidence 4678889999988887777888899999999987765
No 127
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.09 E-value=84 Score=18.31 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=25.5
Q ss_pred cccCccc-CCCCHHHHHHHHhcceEEEecCCCEEEcCCCc
Q psy14743 3 ILDNDFM-KNLDMTQIREIVDCMYPVEYIAGSIIIKEGDV 41 (86)
Q Consensus 3 L~~~~lF-~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~ 41 (86)
|...++| ..++.++.+.++... +.|..++++-+.
T Consensus 13 l~~~~WyhG~isR~~Ae~lL~~~-----~~G~FLVR~S~~ 47 (118)
T 2dlz_A 13 YTAYPWFAGNMERQQTDNLLKSH-----ASGTYLIRERPA 47 (118)
T ss_dssp GGGSTTEEESCCHHHHHHHHHHS-----CTTBEEEECCSC
T ss_pred cccCCceecCCCHHHHHHHhcCC-----CCCEEEEEeCCC
Confidence 3445555 588999999988652 789999998764
No 128
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=22.63 E-value=38 Score=21.22 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=25.0
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEccEEEEE
Q psy14743 24 MYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVP 56 (86)
Q Consensus 24 ~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~ 56 (86)
....++++|..+-.-.-++...++|++|+.+..
T Consensus 44 v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~ 76 (159)
T 3ebr_A 44 ITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYK 76 (159)
T ss_dssp EEEEEECSSCBCCCEEESSCEEEEEEESCEEET
T ss_pred EEEEEECCCCCcccccCCCCEEEEEEEeEEEEe
Confidence 356778888887665556778888999998853
No 129
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Probab=22.31 E-value=1.3e+02 Score=17.86 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=25.6
Q ss_pred ccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEE
Q psy14743 8 FMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYV 47 (86)
Q Consensus 8 lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yi 47 (86)
++..++.++.+.++.. -+.|..++++-+....-|+
T Consensus 23 yhg~isR~eAe~lL~~-----~~~G~FLVR~S~s~~g~y~ 57 (131)
T 2kno_A 23 YKPHLSRDQAIALLKD-----KDPGAFLIRDSHSFQGAYG 57 (131)
T ss_dssp BCTTCCHHHHHHHHTT-----SCTTBEEEEECSSSTTEEE
T ss_pred eecCCCHHHHHHHhcC-----CCCCeEEEecCCCCCCCEE
Confidence 4568899999998864 2699999998865444443
No 130
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A
Probab=22.29 E-value=92 Score=17.57 Aligned_cols=50 Identities=12% Similarity=0.049 Sum_probs=32.9
Q ss_pred cccCccc-CCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEE---EEEccEEEEEe
Q psy14743 3 ILDNDFM-KNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVY---VMEGKKYKVPG 57 (86)
Q Consensus 3 L~~~~lF-~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~y---iI~~G~v~V~~ 57 (86)
|...++| ..++.++.+.++.. -+.|..++++-+....-| +...|.++=++
T Consensus 5 L~~~~Wyhg~isr~~Ae~lL~~-----~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~ 58 (106)
T 3eaz_A 5 LSLMPWFHGKITREQAERLLYP-----PETGLFLVRESTNYPGDYTLCVSSDGKVEHYR 58 (106)
T ss_dssp GGGCTTBCCSCCHHHHHHHTCS-----CCTTEEEEEECTTSTTCEEEEEEETTEEEEEE
T ss_pred cccCCCcCCCCCHHHHHHHhCC-----CCCCEEEEEECCCCCCcEEEEEEeCCceEEEE
Confidence 5566665 57899999998763 268999999876433323 33456665443
No 131
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=22.25 E-value=96 Score=21.82 Aligned_cols=37 Identities=14% Similarity=-0.020 Sum_probs=29.9
Q ss_pred eEEEecCCCEEEcCCCccCeEEEEEccEEEEEeecccc
Q psy14743 25 YPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKV 62 (86)
Q Consensus 25 ~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V~~~~~~~ 62 (86)
...-|.+|+.+..+... +.++-+++|+..|+..+...
T Consensus 210 eV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~~~q~~ 246 (286)
T 2qnk_A 210 QVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTMGGRRL 246 (286)
T ss_dssp EEEEECSEEEEECCCSS-CEEEEEEESCEEEEETTEEE
T ss_pred EEEEEcCCccccccCcC-cEEEEEEcCceEEEECCeEE
Confidence 34558899999988888 88999999999888766543
No 132
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A
Probab=22.21 E-value=81 Score=18.00 Aligned_cols=51 Identities=8% Similarity=0.071 Sum_probs=33.1
Q ss_pred cccCccc-CCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEE---EEEccEEEEEee
Q psy14743 3 ILDNDFM-KNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVY---VMEGKKYKVPGS 58 (86)
Q Consensus 3 L~~~~lF-~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~y---iI~~G~v~V~~~ 58 (86)
|...++| ..++.++.+.++.. -+.|..++++-+....-| +...|.++=++.
T Consensus 2 L~~~~Wyhg~isR~~Ae~lL~~-----~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I 56 (112)
T 3k2m_A 2 LEKHSWYHGPVSRNAAEYLLSS-----GINGSFLVRESESSPGQRSISLRYEGRVYHYRI 56 (112)
T ss_dssp GGGSTTEEESCCHHHHHHHTTT-----CCTTEEEEEECSSSTTCEEEEEEETTEEEEEEE
T ss_pred CccCcceeeCCCHHHHHHHhcc-----CCCceEEEEeCCCCCCCEEEEEEeCCcEEEEEE
Confidence 4555655 57899999988763 268999999886443333 334666654443
No 133
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=21.80 E-value=30 Score=18.38 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=20.2
Q ss_pred CCcccCcccCCCCHHHHHHHHhcce
Q psy14743 1 MAILDNDFMKNLDMTQIREIVDCMY 25 (86)
Q Consensus 1 m~L~~~~lF~~L~~~~l~~l~~~~~ 25 (86)
|.+-++.++.+.++++.+.|+..+.
T Consensus 1 MP~I~I~~~~grs~eqK~~L~~~it 25 (72)
T 3mb2_A 1 MLLLRITMLEGRSTEQKAELARALS 25 (72)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHH
Confidence 5666778889999999999887663
No 134
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*
Probab=21.42 E-value=51 Score=18.75 Aligned_cols=48 Identities=8% Similarity=0.186 Sum_probs=31.2
Q ss_pred cccCccc-CCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCe---EEEEEccEEEEEe
Q psy14743 3 ILDNDFM-KNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSI---VYVMEGKKYKVPG 57 (86)
Q Consensus 3 L~~~~lF-~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~---~yiI~~G~v~V~~ 57 (86)
|...++| ..++.++.+.++. +.|..++++-+.... +-+...|.++=++
T Consensus 4 l~~~~Wyhg~isR~~Ae~lL~-------~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~ 55 (104)
T 1mil_A 4 LRGEPWFHGKLSRREAEALLQ-------LNGDFLVRESTTTPGQYVLTGLQSGQPKHLL 55 (104)
T ss_dssp TTTCTTBCSSCCHHHHHTTCC-------STTEEEEEECCSSCSSEEEEEEETTEEEEEE
T ss_pred cccCCcCCCCCCHHHHHHHhc-------cCCcEEEEeCCCCCCCEEEEEEECCEEEEEE
Confidence 4555655 5789888888775 589999998765332 2233456665443
No 135
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=21.32 E-value=64 Score=20.39 Aligned_cols=32 Identities=6% Similarity=0.054 Sum_probs=25.8
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEccEEEE
Q psy14743 24 MYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKV 55 (86)
Q Consensus 24 ~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V 55 (86)
+....|++|..+-.-.-++....+|++|++..
T Consensus 45 v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~ 76 (165)
T 3cjx_A 45 VMRASFAPGLTLPLHFHTGTVHMYTISGCWYY 76 (165)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEESEEEE
T ss_pred EEEEEECCCCcCCcccCCCCEEEEEEEEEEEE
Confidence 45677888888776666788889999999986
No 136
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=21.09 E-value=34 Score=18.56 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=19.6
Q ss_pred CCcccCcccCCCCHHHHHHHHhcc
Q psy14743 1 MAILDNDFMKNLDMTQIREIVDCM 24 (86)
Q Consensus 1 m~L~~~~lF~~L~~~~l~~l~~~~ 24 (86)
|.+-++.++.+.++++.+.|....
T Consensus 1 MP~I~I~~~~Grs~eqK~~L~~~i 24 (76)
T 3ej9_A 1 MPMISCDMRYGRTDEQKRALSAGL 24 (76)
T ss_dssp -CEEEEEEETTCCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHH
Confidence 667778889999999999988766
No 137
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=21.00 E-value=1.3e+02 Score=17.33 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=24.0
Q ss_pred EEecCCCEEEcCCC------------ccCeEEEEEccEEEEEee
Q psy14743 27 VEYIAGSIIIKEGD------------VGSIVYVMEGKKYKVPGS 58 (86)
Q Consensus 27 ~~~~~Ge~I~~eGd------------~~d~~yiI~~G~v~V~~~ 58 (86)
....+|.+|++|-- ..+.+|.+.+|.|+..+.
T Consensus 29 q~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~ 72 (85)
T 3v2d_0 29 QVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDR 72 (85)
T ss_dssp CEECTTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEEEEC
T ss_pred eEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEEEEc
Confidence 34678888887643 256799999999998764
No 138
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=20.67 E-value=47 Score=21.76 Aligned_cols=38 Identities=8% Similarity=-0.100 Sum_probs=24.3
Q ss_pred ccCeEEEEEccEEEEEeecccc----CcccCccCcccCCCCC
Q psy14743 41 VGSIVYVMEGKKYKVPGSMQKV----PGPMQKVPGPMQKVPG 78 (86)
Q Consensus 41 ~~d~~yiI~~G~v~V~~~~~~~----~~~~~~~~~~~~~~~~ 78 (86)
+.+.+|++++|.+.+...+... .....=-.|+|--+|.
T Consensus 53 ~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~ 94 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPG 94 (176)
T ss_dssp SSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECT
T ss_pred CCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCC
Confidence 4568999999999998776321 1123334566665554
No 139
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}
Probab=20.35 E-value=1.3e+02 Score=18.01 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=29.7
Q ss_pred ccCCCCHHHHHHHHhcceEEEecCCCEEEcCCCccCeEEEE---EccEEEEE
Q psy14743 8 FMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVM---EGKKYKVP 56 (86)
Q Consensus 8 lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~eGd~~d~~yiI---~~G~v~V~ 56 (86)
++..++.++.+.++.. -+.|..++++-+.....|.+ ..|.++=+
T Consensus 27 yhG~isR~eAe~lL~~-----~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~ 73 (141)
T 2vif_A 27 YWGPITRWEAEGKLAN-----VPDGSFLVRDSSDDRYLLSLSFRSHGKTLHT 73 (141)
T ss_dssp BCCSCCHHHHHHHTTT-----SCTTCEEEEECSSTTCSEEEEEEETTEEEEE
T ss_pred cccCCCHHHHHHHhcC-----CCCceEEEEecCCCCCCEEEEEEECCEEEEE
Confidence 4468899999998864 26899999988765443333 34555433
No 140
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=20.22 E-value=38 Score=23.87 Aligned_cols=40 Identities=13% Similarity=0.010 Sum_probs=26.3
Q ss_pred CCccCeEEEEEccEEEEEeeccccCcccCccCcccCCCCC
Q psy14743 39 GDVGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQKVPG 78 (86)
Q Consensus 39 Gd~~d~~yiI~~G~v~V~~~~~~~~~~~~~~~~~~~~~~~ 78 (86)
-+..+.+|++++|...+...+........=-.|+|--+|+
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfllP~ 87 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPA 87 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEEECT
T ss_pred CCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEEeCC
Confidence 4568899999999999977663212233334566666664
No 141
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=20.04 E-value=1.4e+02 Score=19.58 Aligned_cols=31 Identities=16% Similarity=0.122 Sum_probs=24.1
Q ss_pred ceEEEecCCCEEEcCCCccCeEEEEEccEEEE
Q psy14743 24 MYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKV 55 (86)
Q Consensus 24 ~~~~~~~~Ge~I~~eGd~~d~~yiI~~G~v~V 55 (86)
.....+++|..+-.....+..+ +|++|.+.-
T Consensus 148 v~l~r~~~G~~~~~~~hgG~Ei-lVL~G~~~d 178 (223)
T 3o14_A 148 VTHRKLEPGANLTSEAAGGIEV-LVLDGDVTV 178 (223)
T ss_dssp EEEEEECTTCEEEECCSSCEEE-EEEEEEEEE
T ss_pred EEEEEECCCCccCCCCCCcEEE-EEEEeEEEE
Confidence 3567789999998887756665 889999873
No 142
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=20.03 E-value=52 Score=17.21 Aligned_cols=18 Identities=6% Similarity=0.115 Sum_probs=14.5
Q ss_pred CcccCCCCHHHHHHHHhcc
Q psy14743 6 NDFMKNLDMTQIREIVDCM 24 (86)
Q Consensus 6 ~~lF~~L~~~~l~~l~~~~ 24 (86)
.|-| .|++++++.|++.+
T Consensus 59 Mp~~-~Lsd~ei~~l~~yl 76 (80)
T 1ayg_A 59 MPPQ-NVTDAEAKQLAQWI 76 (80)
T ss_dssp BCCC-CCCHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHH
Confidence 4556 89999999998765
Done!