RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14743
(86 letters)
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase
A {Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 47.0 bits (111), Expect = 7e-09
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQK 61
AI N +LD + +I D M+PV +IAG +I++GD G YV++ + V + +
Sbjct: 21 AIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEW 80
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase
A {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 46.7 bits (110), Expect = 8e-09
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYK 54
A D KNLD Q+ +++D M+ G +I +GD G YV++ +
Sbjct: 17 ACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD 69
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains
1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 44.0 bits (103), Expect = 1e-07
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 2 AILDNDFMKNLDMTQIREIVDCMYPVEYI-AGSIIIKEGDVGSIVYVMEGKKYKVPGSMQ 60
+L + +L T RE+ + + G+++ +G+ G+ Y++ V +
Sbjct: 11 ELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK 70
Query: 61 KVPGPMQ 67
V +
Sbjct: 71 GVVCTLH 77
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium
loti [TaxId: 381]}
Length = 133
Score = 41.7 bits (97), Expect = 8e-07
Identities = 13/72 (18%), Positives = 23/72 (31%)
Query: 8 FMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQ 67
+ L + EIV + AG++I + G+ G ++ + V GP
Sbjct: 18 LFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGPGA 77
Query: 68 KVPGPMQKVPGP 79
P
Sbjct: 78 FFGEMALISGEP 89
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 41.0 bits (95), Expect = 2e-06
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 2 AILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVME 49
+ + +R+I C Y G + ++GD+G+ Y +
Sbjct: 25 RLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVL 72
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase
A {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 40.6 bits (94), Expect = 2e-06
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 8 FMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKV 55
F+K+L++++ ++VD + Y G II +GD +++E + ++
Sbjct: 9 FLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRI 56
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 38.3 bits (88), Expect = 2e-05
Identities = 12/80 (15%), Positives = 27/80 (33%)
Query: 1 MAILDNDFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQ 60
+ L D L+ + + + P S + EGD+ + ++ + K K+
Sbjct: 1 LGHLLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGV 60
Query: 61 KVPGPMQKVPGPMQKVPGPM 80
+ ++ P Q
Sbjct: 61 YGRFHISRIVKPGQFFGMRP 80
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase
A {Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 36.7 bits (84), Expect = 5e-05
Identities = 12/78 (15%), Positives = 30/78 (38%)
Query: 7 DFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPM 66
+++LD + + D + PV++ G I+ +G+ G +++ V + +
Sbjct: 8 SILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFV 67
Query: 67 QKVPGPMQKVPGPMQKLS 84
+ G + L
Sbjct: 68 EVGRLGPSDYFGEIALLM 85
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 35.2 bits (80), Expect = 2e-04
Identities = 6/61 (9%), Positives = 20/61 (32%)
Query: 16 QIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQK 75
+ + + +Y + S +I +G+ +Y + V ++ +
Sbjct: 5 TLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDF 64
Query: 76 V 76
+
Sbjct: 65 I 65
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
TM1171, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 129
Score = 34.9 bits (79), Expect = 2e-04
Identities = 8/62 (12%), Positives = 22/62 (35%)
Query: 16 QIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQK 75
+++++ C + + G I+ + D V ++ K + P+Q
Sbjct: 2 DLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQI 61
Query: 76 VP 77
+
Sbjct: 62 IA 63
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 34.8 bits (79), Expect = 3e-04
Identities = 7/59 (11%), Positives = 17/59 (28%)
Query: 16 QIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQ 74
+ +++ + Y A S II GD ++ + + +
Sbjct: 4 HLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGD 62
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 139
Score = 30.4 bits (67), Expect = 0.013
Identities = 8/59 (13%), Positives = 20/59 (33%)
Query: 16 QIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPMQKVPGPMQ 74
++R ++ GS +I G+ + + + K K+ + + G
Sbjct: 16 KLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNS 74
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 132
Score = 27.7 bits (60), Expect = 0.11
Identities = 6/75 (8%), Positives = 19/75 (25%)
Query: 7 DFMKNLDMTQIREIVDCMYPVEYIAGSIIIKEGDVGSIVYVMEGKKYKVPGSMQKVPGPM 66
+ L + GS++ + V+V+ + +V ++ +
Sbjct: 5 NIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISL 64
Query: 67 QKVPGPMQKVPGPMQ 81
+
Sbjct: 65 FYLTSGDMFCMHSGC 79
>d2ex2a1 e.3.1.3 (A:22-477) DD-carboxypeptidase DacB {Escherichia
coli [TaxId: 562]}
Length = 456
Score = 25.2 bits (54), Expect = 1.0
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 33 SIIIKEGDVGSIVYVMEGKKYKVPGSMQKV 62
++++++ + ++ +P S QKV
Sbjct: 16 ALMVQKVGASAPAIDYHSQQMALPASTQKV 45
>d1w5da1 e.3.1.3 (A:5-462) Penicillin-binding protein DacC
{Bacillus subtilis [TaxId: 1423]}
Length = 458
Score = 25.3 bits (54), Expect = 1.2
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 33 SIIIKEGDVGSIVYVMEGKKYKVPGSMQKV 62
I ++ + G+++Y G P S K+
Sbjct: 23 GITVRSAETGAVLYEHSGDTRMRPASSLKL 52
>d1w79a1 e.3.1.3 (A:1-467) D-alanyl-D-alanine carboxypeptidase Dac
{Actinomadura sp. [TaxId: 1989]}
Length = 467
Score = 24.1 bits (51), Expect = 2.8
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 33 SIIIKEGDVGSIVYVMEGKKYKVPGSMQKV 62
+++ + G +Y +G + +P S K+
Sbjct: 24 GVVVVDTATGEELYSRDGGEQLLPASNMKL 53
>d2zcwa2 b.82.3.2 (A:6-117) Transcriptional regulator TTHA1359,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 112
Score = 23.4 bits (49), Expect = 3.4
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 27 VEYIAGSIIIKEGDVGSI--VYVME 49
V + AG +I+ G G Y +
Sbjct: 3 VSFKAGDVILYPGVPGPRDRAYRVL 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.403
Gapped
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 331,365
Number of extensions: 13905
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 18
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)