Query psy14745
Match_columns 854
No_of_seqs 252 out of 569
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 19:33:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo9_A E3 SUMO-protein ligase 100.0 4.5E-53 1.6E-57 451.6 20.4 257 5-269 21-304 (360)
2 3i2d_A E3 SUMO-protein ligase 100.0 7.1E-51 2.4E-55 435.9 21.0 239 28-273 95-343 (371)
3 3htk_C E3 SUMO-protein ligase 98.8 9.8E-10 3.4E-14 114.5 3.6 79 165-245 168-248 (267)
4 2yu4_A E3 SUMO-protein ligase 97.5 5.1E-05 1.7E-09 66.6 3.1 67 178-246 7-80 (94)
5 2kr4_A Ubiquitin conjugation f 97.4 5.1E-05 1.7E-09 65.7 2.1 66 175-245 11-76 (85)
6 1wgm_A Ubiquitin conjugation f 97.2 0.00038 1.3E-08 62.1 5.1 66 175-245 19-85 (98)
7 2kre_A Ubiquitin conjugation f 97.0 0.00056 1.9E-08 61.2 4.4 65 176-245 27-91 (100)
8 1t1h_A Gspef-atpub14, armadill 96.9 0.00065 2.2E-08 56.4 4.1 64 178-245 8-71 (78)
9 2bay_A PRE-mRNA splicing facto 96.7 0.00039 1.3E-08 57.4 1.3 54 177-234 2-55 (61)
10 3ztg_A E3 ubiquitin-protein li 96.6 0.0013 4.4E-08 56.2 3.9 66 178-246 13-80 (92)
11 2f42_A STIP1 homology and U-bo 96.4 0.0018 6.2E-08 64.1 3.8 65 177-245 105-169 (179)
12 2c2l_A CHIP, carboxy terminus 96.3 0.0017 5.7E-08 64.5 3.0 64 178-245 208-271 (281)
13 2y43_A E3 ubiquitin-protein li 95.7 0.0089 3E-07 51.9 4.3 64 178-246 22-86 (99)
14 2ecw_A Tripartite motif-contai 95.6 0.003 1E-07 52.2 1.1 65 177-242 18-84 (85)
15 2ckl_B Ubiquitin ligase protei 95.5 0.0072 2.5E-07 57.1 3.4 69 175-247 51-121 (165)
16 2ckl_A Polycomb group ring fin 95.5 0.012 4.2E-07 51.9 4.6 64 178-246 15-83 (108)
17 3fl2_A E3 ubiquitin-protein li 95.3 0.012 4.2E-07 53.1 4.0 65 177-246 51-117 (124)
18 3lrq_A E3 ubiquitin-protein li 95.2 0.011 3.8E-07 52.0 3.2 65 178-246 22-87 (100)
19 1z6u_A NP95-like ring finger p 95.1 0.014 4.7E-07 55.4 4.0 65 178-247 78-144 (150)
20 2ecv_A Tripartite motif-contai 95.1 0.0056 1.9E-07 50.6 1.0 65 176-241 17-83 (85)
21 1jm7_A BRCA1, breast cancer ty 95.0 0.013 4.5E-07 51.3 3.3 64 179-245 22-86 (112)
22 1jm7_B BARD1, BRCA1-associated 94.7 0.015 5.1E-07 52.3 2.8 62 178-246 22-84 (117)
23 3hct_A TNF receptor-associated 94.7 0.024 8E-07 51.1 4.1 67 175-246 15-82 (118)
24 2ecy_A TNF receptor-associated 94.3 0.048 1.7E-06 44.0 4.8 52 176-232 13-65 (66)
25 2csy_A Zinc finger protein 183 94.3 0.046 1.6E-06 45.7 4.8 61 178-245 15-76 (81)
26 2egp_A Tripartite motif-contai 94.2 0.0051 1.7E-07 50.8 -1.3 61 178-241 12-77 (79)
27 2ysl_A Tripartite motif-contai 93.8 0.056 1.9E-06 43.9 4.3 56 175-233 17-73 (73)
28 3hcs_A TNF receptor-associated 93.2 0.062 2.1E-06 50.9 4.1 68 174-246 14-82 (170)
29 3l11_A E3 ubiquitin-protein li 93.1 0.029 9.8E-07 50.0 1.5 65 178-246 15-86 (115)
30 2yur_A Retinoblastoma-binding 92.9 0.041 1.4E-06 45.6 2.1 53 176-231 13-66 (74)
31 2djb_A Polycomb group ring fin 92.7 0.076 2.6E-06 43.6 3.4 52 177-233 14-66 (72)
32 1rmd_A RAG1; V(D)J recombinati 91.7 0.11 3.6E-06 46.3 3.3 64 178-246 23-88 (116)
33 4ayc_A E3 ubiquitin-protein li 91.0 0.13 4.5E-06 47.5 3.3 61 179-245 54-117 (138)
34 3knv_A TNF receptor-associated 89.2 0.075 2.6E-06 50.0 0.1 83 172-264 25-117 (141)
35 1g25_A CDK-activating kinase a 86.4 0.46 1.6E-05 38.1 3.1 52 179-234 4-60 (65)
36 2ct2_A Tripartite motif protei 86.4 0.46 1.6E-05 39.6 3.2 51 178-231 15-70 (88)
37 2ect_A Ring finger protein 126 86.1 0.44 1.5E-05 39.3 3.0 52 178-234 15-69 (78)
38 2xeu_A Ring finger protein 4; 86.0 0.29 9.9E-06 38.4 1.7 50 179-233 4-60 (64)
39 3ng2_A RNF4, snurf, ring finge 85.4 0.35 1.2E-05 38.9 1.9 50 179-233 11-67 (71)
40 2d8t_A Dactylidin, ring finger 84.9 0.2 6.8E-06 41.0 0.3 47 179-230 16-62 (71)
41 1chc_A Equine herpes virus-1 r 83.1 0.77 2.6E-05 36.8 3.1 45 179-228 6-51 (68)
42 2ysj_A Tripartite motif-contai 81.7 1 3.4E-05 35.8 3.2 46 175-223 17-63 (63)
43 2ecj_A Tripartite motif-contai 80.3 2 6.9E-05 33.1 4.4 43 178-223 15-58 (58)
44 4ap4_A E3 ubiquitin ligase RNF 79.8 0.97 3.3E-05 39.9 2.8 50 179-233 8-64 (133)
45 1x4j_A Ring finger protein 38; 79.1 0.92 3.2E-05 37.3 2.2 46 179-229 24-72 (75)
46 2ecm_A Ring finger and CHY zin 78.6 1.5 5.3E-05 33.5 3.2 44 180-228 7-54 (55)
47 2ep4_A Ring finger protein 24; 78.0 1.3 4.5E-05 36.1 2.8 46 178-228 15-63 (74)
48 1bor_A Transcription factor PM 77.2 1.8 6.2E-05 34.2 3.3 45 179-231 7-51 (56)
49 2ea6_A Ring finger protein 4; 74.2 1.5 5.1E-05 34.7 2.2 46 178-228 15-67 (69)
50 1iym_A EL5; ring-H2 finger, ub 70.7 2.6 8.8E-05 32.3 2.7 45 179-228 6-54 (55)
51 1e4u_A Transcriptional repress 69.8 5.8 0.0002 33.9 4.9 51 179-232 12-65 (78)
52 2kiz_A E3 ubiquitin-protein li 65.2 3.6 0.00012 33.0 2.6 46 179-229 15-63 (69)
53 1v87_A Deltex protein 2; ring- 63.5 4.8 0.00016 35.3 3.3 49 180-228 27-93 (114)
54 2ecg_A Baculoviral IAP repeat- 62.8 3.9 0.00013 33.9 2.5 43 178-229 25-68 (75)
55 4ap4_A E3 ubiquitin ligase RNF 57.5 3.2 0.00011 36.6 1.0 50 179-233 73-129 (133)
56 2ecn_A Ring finger protein 141 56.9 2 6.9E-05 34.6 -0.3 48 178-231 15-62 (70)
57 4ic3_A E3 ubiquitin-protein li 55.8 2.8 9.7E-05 34.8 0.4 41 179-228 25-66 (74)
58 2ecl_A Ring-box protein 2; RNF 55.8 5.2 0.00018 33.8 2.1 33 196-232 47-79 (81)
59 2vje_A E3 ubiquitin-protein li 51.0 6.5 0.00022 32.0 1.8 45 180-228 10-56 (64)
60 2vje_B MDM4 protein; proto-onc 50.6 6.4 0.00022 31.9 1.7 44 180-227 9-54 (63)
61 2yrc_A Protein transport prote 50.4 2 6.8E-05 35.9 -1.4 33 190-226 8-42 (59)
62 2l0b_A E3 ubiquitin-protein li 48.4 8.7 0.0003 32.9 2.3 46 179-229 41-89 (91)
63 3t6p_A Baculoviral IAP repeat- 42.6 5.6 0.00019 42.8 0.2 44 176-228 293-337 (345)
64 2y1n_A E3 ubiquitin-protein li 39.5 9.7 0.00033 42.0 1.5 49 178-231 332-381 (389)
65 2ea5_A Cell growth regulator w 37.4 18 0.00063 29.8 2.5 41 179-228 16-57 (68)
66 2yho_A E3 ubiquitin-protein li 35.4 9.1 0.00031 32.5 0.4 41 180-229 20-61 (79)
67 2j9u_B VPS36, vacuolar protein 34.0 13 0.00043 33.0 1.0 10 215-224 15-24 (76)
68 3m62_A Ubiquitin conjugation f 32.2 35 0.0012 41.7 4.7 63 178-244 891-953 (968)
69 1m2v_B SEC24, protein transpor 31.5 7.7 0.00026 46.8 -1.0 32 190-226 227-259 (926)
70 6rxn_A Rubredoxin; electron tr 31.2 13 0.00046 29.7 0.7 12 215-226 28-39 (46)
71 1pcx_A Protein transport prote 30.2 8.1 0.00028 45.8 -1.0 32 190-226 111-143 (810)
72 3efo_B SEC24 related gene fami 29.9 7.5 0.00026 45.9 -1.4 33 190-226 97-129 (770)
73 3eh2_A Protein transport prote 28.1 8.2 0.00028 45.5 -1.5 34 189-226 92-125 (766)
74 3dpl_R Ring-box protein 1; ubi 27.6 26 0.0009 31.6 2.0 34 193-230 69-102 (106)
75 1m2o_A SEC23, protein transpor 26.5 11 0.00039 44.3 -0.7 34 190-227 52-87 (768)
76 2v3b_B Rubredoxin 2, rubredoxi 26.2 20 0.00069 29.5 0.9 12 215-226 34-45 (55)
77 1e8j_A Rubredoxin; iron-sulfur 25.9 21 0.00071 29.1 0.9 12 215-226 34-45 (52)
78 2nut_A Protein transport prote 25.7 11 0.00039 44.3 -0.9 33 190-226 61-95 (769)
79 1yq2_A Beta-galactosidase; gly 25.6 37 0.0013 41.4 3.4 39 70-112 150-190 (1024)
80 3vk6_A E3 ubiquitin-protein li 25.5 19 0.00065 33.3 0.7 45 180-227 3-47 (101)
81 4rxn_A Rubredoxin; electron tr 25.4 19 0.00067 29.7 0.7 12 215-226 34-45 (54)
82 2kn9_A Rubredoxin; metalloprot 25.1 21 0.00072 31.7 0.9 12 215-226 58-69 (81)
83 1wim_A KIAA0161 protein; ring 24.9 16 0.00055 31.3 0.1 48 179-226 6-61 (94)
84 1vyx_A ORF K3, K3RING; zinc-bi 24.6 53 0.0018 26.8 3.2 37 188-229 20-59 (60)
85 1yk4_A Rubredoxin, RD; electro 24.6 22 0.00074 29.0 0.8 12 215-226 33-44 (52)
86 1dx8_A Rubredoxin; electron tr 24.5 21 0.00071 30.8 0.7 12 215-226 38-49 (70)
87 3bga_A Beta-galactosidase; NYS 23.6 41 0.0014 41.0 3.3 39 70-112 155-195 (1010)
88 2d8s_A Cellular modulator of i 23.4 36 0.0012 29.2 2.0 39 187-230 30-71 (80)
89 3cmg_A Putative beta-galactosi 23.1 44 0.0015 38.2 3.3 40 70-113 78-120 (667)
90 3eh1_A Protein transport prote 21.8 15 0.00052 43.2 -0.9 31 190-226 84-115 (751)
91 1s24_A Rubredoxin 2; electron 21.3 28 0.00095 31.3 0.9 12 215-226 66-77 (87)
92 4aw7_A GH86A beta-porphyranase 21.2 1.6E+02 0.0056 34.2 7.3 44 71-114 521-574 (591)
No 1
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=100.00 E-value=4.5e-53 Score=451.60 Aligned_cols=257 Identities=28% Similarity=0.475 Sum_probs=213.5
Q ss_pred cccccceecccccCCeeeecc----cccceeeEEecccchhcccccC----------CccEEEE-eeecCCCcCCCCCCC
Q psy14745 5 LRLTFPVRDGIILPPFRLEHN----LAVSNHVFQLKTTVHQTLMWRS----------DLELQLK-CFHHEDRQMNTNWPA 69 (854)
Q Consensus 5 ~RL~FpV~dG~vLpPfRLe~N----lavSnhvFqLk~t~~qtLv~Rs----------dlELQLR-Ci~l~Drq~~t~WP~ 69 (854)
-+|+||.+...+|.|+.|... ++.+..+|+|++.+...+..+. .++|||| |...+...+++.||.
T Consensus 21 k~lPFy~v~~~l~~Pt~L~~~~~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vqvqlRfC~~~~~~~q~~~fP~ 100 (360)
T 4fo9_A 21 KNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQEDNYPN 100 (360)
T ss_dssp CCCTTEEEEEEEEEEEECCCCSSCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEEEEEEEEEC-C-CCBCCBCCT
T ss_pred cCCCchHhHhhhcCceecccccCcccccceeEEEcCHHHHHHHhhccccccccccceeEEEEEEEEEccCCCcccccCCC
Confidence 378999999999999999974 4567889999986655554331 2466777 777666788999999
Q ss_pred ceEEEEcCeeccccC--------CCCCCCCCCccccccccCc---ccEEEEEEecc-ccceeEEEEEeeccCHHHHHHHH
Q psy14745 70 SVQVSVNATPLMIDR--------GENKTSHRPLYLKEVCQPG---RNTIQITVSAC-CCSHLFVLQLVHRPSVKSVLQGL 137 (854)
Q Consensus 70 ~I~IsVNgkpV~I~R--------genKrsDrPVdIT~lcrpG---rNtIqIT~ss~-~~s~lFvV~LVkr~SVeqVLq~L 137 (854)
+++|+|||++|.+++ .++|+.++|++||++++.| .|+|+|+|... .+.|+++|+||++.++++|++.|
T Consensus 101 ~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~~y~l~V~lV~~~s~~~Llq~l 180 (360)
T 4fo9_A 101 SLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRL 180 (360)
T ss_dssp TCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTBCEEEEEEEEEECCHHHHHHHH
T ss_pred ceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCceEEEEEEEEEeCCHHHHHHHH
Confidence 999999999998753 3567889999999999987 59999999864 57889999999999999999999
Q ss_pred HhhccccHHHHHHHHHHHhcCCCCCCCCCCCceeeeeeEEeecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCe
Q psy14745 138 LRKRLLTADHCIAKIKRNFNNSNSSSMSSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGS 217 (854)
Q Consensus 138 lkkRlLpaEe~IakIKr~L~~s~SssddDDDDIe~tsl~ISLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~t 217 (854)
++++.+++++++++||+++.. ++||||+++.++|||+||||++||++||||+.|+|+|||||++||++++++++
T Consensus 181 ~~k~~~~~e~t~~~Ik~~l~~------d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~ 254 (360)
T 4fo9_A 181 KMKGIRNPDHSRALIKEKLTA------DPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPT 254 (360)
T ss_dssp HTC-CBCHHHHHHHHHHHHC---------------CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCC
T ss_pred HhcCCCCHHHHHHHHHHHhcc------CCccceeeeeeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCC
Confidence 998899999999999999853 35667989999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCeeehHhHHHHHhhcCCCCceEEEEcCCCcEeeCCCCcc
Q psy14745 218 WRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANWRVPRGMHV 269 (854)
Q Consensus 218 WkCPIC~K~a~~edLiID~yL~eILk~L~~sdVeeV~Vd~DGSWrp~~~~~~ 269 (854)
|+||||+|.+++++|+||+||++||+.+ .++++|+|++||+|++....++
T Consensus 255 W~CPiC~k~~~~~dL~ID~~~~~IL~~~--~~v~~I~v~~DGsW~p~~~k~e 304 (360)
T 4fo9_A 255 WICPVCDKKAAYESLILDGLFMEILNDC--SDVDEIKFQEDGSWCPMRPKKE 304 (360)
T ss_dssp CBCTTTCSBCCGGGEEEBHHHHHHHTTC--SSCCEEEECC-CCEEC------
T ss_pred eECCCCCcccCHHHeEEcHHHHHHHHhC--CCCCEEEECCCCceecCCCCcc
Confidence 9999999999999999999999999987 4899999999999999865443
No 2
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-51 Score=435.91 Aligned_cols=239 Identities=19% Similarity=0.354 Sum_probs=201.9
Q ss_pred cceeeEEecccchhccc-ccCCccEEEEeeecCCC----cCCCCCCCceEEEEcCeecccc-C--CCCCCCCCCcccccc
Q psy14745 28 VSNHVFQLKTTVHQTLM-WRSDLELQLKCFHHEDR----QMNTNWPASVQVSVNATPLMID-R--GENKTSHRPLYLKEV 99 (854)
Q Consensus 28 vSnhvFqLk~t~~qtLv-~RsdlELQLRCi~l~Dr----q~~t~WP~~I~IsVNgkpV~I~-R--genKrsDrPVdIT~l 99 (854)
.....|.|+....+.|. ....++|+|+|....+. ..+++||..++|+|||+.|+.+ | +.+.+.++|++||.+
T Consensus 95 ~~~~~F~Ls~~~~~~L~~~~~~~rl~L~C~~~~~~~~~~~~~i~fP~~~eI~VNg~~vk~n~rGlKnk~Gt~~PvDIT~~ 174 (371)
T 3i2d_A 95 MCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSRGNEPIQFPFPNELRCNNVQIKDNIRGFKSKPGTAKPADLTPH 174 (371)
T ss_dssp EEEEEECCCHHHHHHHHSTTCCEEEEEEEEESSCSSCGGGBCCCCCSSEEEEETTEECCSCCSSCTTSCGGGSCEECGGG
T ss_pred EEEEEEEECHHHHHHHhcCCCCceEEEEeeecCCCCCCCCcCeecCCceEEEECCEEeccccccCCCCCCCcCCCCchhh
Confidence 45668888886665554 23579999999987653 3568999999999999999754 4 455678999999999
Q ss_pred ccCc--ccEEEEEEeccccceeEEEEEeeccCHHHHHHHHHhhccccHHHHHHHHHHHhcCCCCCCCCCCCceeeeeeEE
Q psy14745 100 CQPG--RNTIQITVSACCCSHLFVLQLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRNFNNSNSSSMSSSDSIEQTALKV 177 (854)
Q Consensus 100 crpG--rNtIqIT~ss~~~s~lFvV~LVkr~SVeqVLq~LlkkRlLpaEe~IakIKr~L~~s~SssddDDDDIe~tsl~I 177 (854)
++.+ .|+|+|+|....+.|+++++||++.++++|++.|++++.++++.++++||+++.. ++||||+++.++|
T Consensus 175 lr~~~~~N~I~i~y~~~~~~Y~i~v~lVk~~s~e~Ll~~I~~~~~i~~e~tl~~Ik~~ls~------d~DdDIv~~s~~v 248 (371)
T 3i2d_A 175 LKPYTQQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHPKIIKQATLLYLKKTLRE------DEEMGLTTTSTIM 248 (371)
T ss_dssp CCCSSSCEEEEEEEEEESSCEEEEEEEEEECCHHHHHHHHHTSCCBCHHHHHHHHHHHHHS------CC------CEEEE
T ss_pred hccCCCCcEEEEEEecccceEEEEEEEEEecCHHHHHHHHHhcCCCCHHHHHHHHHHHhcc------CCCCceeeeeeEE
Confidence 9875 8999999988888999999999999999999999998889999999999999863 4567799999999
Q ss_pred eecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhcCCCCceEEEEcC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDA 257 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L~~sdVeeV~Vd~ 257 (854)
+|+||||++||++||||+.|+|+|||||++||++++++++|+||||++.+++++|+||+||++||+.+. ++|++|+|++
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~~-~dve~V~v~~ 327 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNCQ-KNVEQVELTS 327 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTSC-TTCCEEEEET
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhcc-CCccEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999999999999984 7999999999
Q ss_pred CCcEeeCCCCcccccC
Q psy14745 258 TANWRVPRGMHVVKNE 273 (854)
Q Consensus 258 DGSWrp~~~~~~Ik~e 273 (854)
||+|+++.+...-.++
T Consensus 328 DGsW~p~~e~~~d~~~ 343 (371)
T 3i2d_A 328 DGKWTAILEDDDDSDS 343 (371)
T ss_dssp TSCEEECC--------
T ss_pred CCCEEeccCCcCCCcc
Confidence 9999999876443333
No 3
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.84 E-value=9.8e-10 Score=114.51 Aligned_cols=79 Identities=23% Similarity=0.393 Sum_probs=72.5
Q ss_pred CCCCceeeeeeEEeecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCC--CCCCCCCCCeeehHhHHHHH
Q psy14745 165 SSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPV--CNKPAQLEGLEVDQYMWGIL 242 (854)
Q Consensus 165 dDDDDIe~tsl~ISLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPI--C~K~a~~edLiID~yL~eIL 242 (854)
++||||+++...++|+|||+...|+.||+.+.|.| .|+...++++.+....|+||+ |++.+...+|+.|..|.+++
T Consensus 168 ~dDDDI~v~~~~~el~CPIcl~~f~DPVts~~CGH--sFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lv 245 (267)
T 3htk_C 168 ADEDDLQIEGGKIELTCPITCKPYEAPLISRKCNH--VFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRC 245 (267)
T ss_dssp TCSSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCC--EEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHH
T ss_pred CCCccceecCCceeeECcCccCcccCCeeeCCCCC--cccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHH
Confidence 56778998999999999999999999999999999 599999999988778899999 99999999999999998887
Q ss_pred hhc
Q psy14745 243 NTL 245 (854)
Q Consensus 243 k~L 245 (854)
+..
T Consensus 246 e~~ 248 (267)
T 3htk_C 246 KIA 248 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 4
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.47 E-value=5.1e-05 Score=66.58 Aligned_cols=67 Identities=19% Similarity=0.479 Sum_probs=56.7
Q ss_pred eecCCcccccccccCCCCCcCccccccHHHHHHHhcC----CCeeecCC--CCCC-CCCCCeeehHhHHHHHhhcC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCE----RGSWRCPV--CNKP-AQLEGLEVDQYMWGILNTLN 246 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~q----k~tWkCPI--C~K~-a~~edLiID~yL~eILk~L~ 246 (854)
.|+|||++..|+-||....|.|. |+...+..+... ....+||+ |.+. +...+|+.|..|.+++++..
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~--f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHT--YEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCE--EEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred EeECcCcCchhcCCEEcCCCCCe--ecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 58999999999999998889996 887776665543 35789999 8887 88999999999999998763
No 5
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.40 E-value=5.1e-05 Score=65.71 Aligned_cols=66 Identities=15% Similarity=0.021 Sum_probs=55.9
Q ss_pred eEEeecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhc
Q psy14745 175 LKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTL 245 (854)
Q Consensus 175 l~ISLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L 245 (854)
+.-.+.|||+...|+-||... |.|. ||...+...... ...||+|++.+..++|+.+..|.+++++.
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLP-SGTV--MDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECT-TSCE--EEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeECC-CCCE--ECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 344689999999999999987 9996 888777666553 46899999999999999999999988764
No 6
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.15 E-value=0.00038 Score=62.07 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=55.8
Q ss_pred eEEeecCCcccccccccCCCCCcC-ccccccHHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhc
Q psy14745 175 LKVSLKCPITFKKITLPARGHDCK-HIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTL 245 (854)
Q Consensus 175 l~ISLkCPLS~~RIkiPVRG~~Ck-HLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L 245 (854)
+.-.+.|||+...|+-||... |. |. ||...+...... ...||+|++.+..++|+.+..|.+++++.
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~-cG~ht--f~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLP-SSRVT--VDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECT-TTCCE--EEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred CcHhcCCcCccccccCCeECC-CCCeE--ECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 344689999999999999965 66 95 998887777654 45899999999999999999999998765
No 7
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.97 E-value=0.00056 Score=61.24 Aligned_cols=65 Identities=17% Similarity=0.044 Sum_probs=56.6
Q ss_pred EEeecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhc
Q psy14745 176 KVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTL 245 (854)
Q Consensus 176 ~ISLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L 245 (854)
.-.+.|||+...|+-||... |.|. ||...+...-.. ...||+|++.+...+|+.+..|.++++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLP-SGTI--MDRSIILRHLLN--SPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp STTTBCTTTCSBCSSEEEET-TTEE--EEHHHHHHHTTS--CSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred cHhhCCcCccCcccCCeECC-CCCE--EchHHHHHHHHc--CCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 34689999999999999987 9996 998888777653 46899999999999999999999988765
No 8
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.92 E-value=0.00065 Score=56.44 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=53.1
Q ss_pred eecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhc
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTL 245 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L 245 (854)
.|.|||....|+.|+.. .|.|. |...-+.+... ....+||+|++.+...+|+.+..+.+++++.
T Consensus 8 ~~~C~IC~~~~~~Pv~~-~CgH~--fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIV-STGQT--YERSSIQKWLD-AGHKTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSCTTTSCCCSSEEEE-TTTEE--EEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred cCCCCCccccccCCEEc-CCCCe--ecHHHHHHHHH-HCcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 57999999999999986 69997 66665555543 3467899999999999999999999888765
No 9
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.72 E-value=0.00039 Score=57.38 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=44.7
Q ss_pred EeecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCCCeee
Q psy14745 177 VSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEV 234 (854)
Q Consensus 177 ISLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~edLiI 234 (854)
+++.||||+..|+-||....|.|. ||.+++.+..++.. +||++++.+..++|+-
T Consensus 2 ~~~~CpIs~~~m~dPV~~~~sG~~--yer~~I~~~l~~~~--~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVLSPKSRTI--FEKSLLEQYVKDTG--NDPITNEPLSIEEIVE 55 (61)
T ss_dssp --CCCTTTCSCCSSEEEETTTTEE--EEHHHHHHHHHHHS--BCTTTCCBCCGGGCEE
T ss_pred CeEEecCCCCCCCCCEEeCCCCcE--EcHHHHHHHHHhCC--CCcCCcCCCChhhcEE
Confidence 468999999999999998789985 99998888776543 4999999998888764
No 10
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.64 E-value=0.0013 Score=56.24 Aligned_cols=66 Identities=20% Similarity=0.363 Sum_probs=52.5
Q ss_pred eecCCcccccccccCCCCCcCccccc-cHHHHHHHhcCCCeeecCCCCCCC-CCCCeeehHhHHHHHhhcC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCF-DLESYLQLNCERGSWRCPVCNKPA-QLEGLEVDQYMWGILNTLN 246 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCF-DLeSFLq~n~qk~tWkCPIC~K~a-~~edLiID~yL~eILk~L~ 246 (854)
.|.|||-...++.|+.-..|.|.=|. -+..|+. ......||+|++.+ ...+|..+..+.++++.+.
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 80 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL---ESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFK 80 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEECHHHHHHHHH---HCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHH
T ss_pred CCCCCCCChhhcCceECCCCCCHHHHHHHHHHHH---hcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHH
Confidence 47999999999999987669998554 3344443 33457999999997 6889999999999998764
No 11
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.40 E-value=0.0018 Score=64.14 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=55.2
Q ss_pred EeecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhc
Q psy14745 177 VSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTL 245 (854)
Q Consensus 177 ISLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L 245 (854)
-.+.|||+...|+-||.. .|.|. ||...+......... .||+|++.+...+|+.+..|..++...
T Consensus 105 ~~f~CPI~~elm~DPV~~-~~Ght--fer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 105 DYLCGKISFELMREPCIT-PSGIT--YDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp GGGBCTTTCSBCSSEEEC-TTSCE--EEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred HhhcccCccccCCCCeEC-CCCCE--ECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 468999999999999998 69995 888877776654333 699999999999999999999998765
No 12
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.31 E-value=0.0017 Score=64.51 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=50.1
Q ss_pred eecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhc
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTL 245 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L 245 (854)
.+.|||+...|+-||... |.|. |+...+...-.... ..||+|++.+...+|+.+.-+.+++++.
T Consensus 208 ~~~c~i~~~~~~dPv~~~-~gh~--f~~~~i~~~~~~~~-~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 208 YLCGKISFELMREPCITP-SGIT--YDRKDIEEHLQRVG-HFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp TTBCTTTCSBCSSEEECS-SCCE--EETTHHHHHHHHTC-SSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred ccCCcCcCCHhcCCeECC-CCCE--ECHHHHHHHHHHCC-CCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 578999999999999966 9997 55444443332222 2399999999999999999999999775
No 13
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.66 E-value=0.0089 Score=51.93 Aligned_cols=64 Identities=22% Similarity=0.458 Sum_probs=52.0
Q ss_pred eecCCcccccccccCCCCCcCccccc-cHHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhcC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCF-DLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLN 246 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCF-DLeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L~ 246 (854)
.+.|||-...+..|+.-..|.|.=|. =+..|+. ..-+||+|++.+...+|..+..+.++++.+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-----YKTQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-----TCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-----CCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 47899999999999988899998664 2344443 2368999999999999999999999987763
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.61 E-value=0.003 Score=52.24 Aligned_cols=65 Identities=26% Similarity=0.543 Sum_probs=48.5
Q ss_pred EeecCCcccccccccCCCCCcCcccccc-HHHHHHHhc-CCCeeecCCCCCCCCCCCeeehHhHHHHH
Q psy14745 177 VSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNC-ERGSWRCPVCNKPAQLEGLEVDQYMWGIL 242 (854)
Q Consensus 177 ISLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~-qk~tWkCPIC~K~a~~edLiID~yL~eIL 242 (854)
-.+.|||-...++.|+. ..|.|.=|.+ +..|+.... .....+||+|++.+..++|..+..+.+|+
T Consensus 18 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp TTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred cCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 35799999999999986 4699986653 344554432 23578999999999999999887665443
No 15
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=95.50 E-value=0.0072 Score=57.14 Aligned_cols=69 Identities=25% Similarity=0.511 Sum_probs=54.8
Q ss_pred eEEeecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCC-CCCCeeehHhHHHHHhhcCC
Q psy14745 175 LKVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPA-QLEGLEVDQYMWGILNTLNN 247 (854)
Q Consensus 175 l~ISLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a-~~edLiID~yL~eILk~L~~ 247 (854)
+.-.+.|||-...+..|+.-..|.|.=|.+ +..|+. .....||+|++.+ ....|..|..|.+++..+..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----SGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----TTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----hCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 344679999999999999988999987653 455554 2357899999988 45779999999999998853
No 16
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=95.49 E-value=0.012 Score=51.94 Aligned_cols=64 Identities=22% Similarity=0.396 Sum_probs=51.5
Q ss_pred eecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCC----CeeehHhHHHHHhhcC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLE----GLEVDQYMWGILNTLN 246 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~e----dLiID~yL~eILk~L~ 246 (854)
.+.|||-...+..|+.-..|.|.=|.+ +..|+. . ...||+|++.+... +|..|..+.++++.+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE---T--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT---S--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH---h--CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 478999999999999988999986643 344443 2 27899999998876 8999999999998774
No 17
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=95.28 E-value=0.012 Score=53.14 Aligned_cols=65 Identities=23% Similarity=0.446 Sum_probs=52.7
Q ss_pred EeecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCC-CCeeehHhHHHHHhhcC
Q psy14745 177 VSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQL-EGLEVDQYMWGILNTLN 246 (854)
Q Consensus 177 ISLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~-edLiID~yL~eILk~L~ 246 (854)
-.+.|||-...+..|+.- .|.|.=|.+ +..|+. .....||+|++.+.. .+|.++..+.++++.+-
T Consensus 51 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 117 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFR----AQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLF 117 (124)
T ss_dssp HHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHS
T ss_pred cCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHh----HCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHc
Confidence 357999999999999886 899986653 345554 345699999999987 88999999999998764
No 18
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=95.16 E-value=0.011 Score=51.96 Aligned_cols=65 Identities=23% Similarity=0.479 Sum_probs=53.4
Q ss_pred eecCCcccccccccCCCCCcCccccc-cHHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhcC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCF-DLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLN 246 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCF-DLeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L~ 246 (854)
.+.|||=...++.|+.-..|.|.=|. =+..|+.... ..||+|++.+..++|+...++.+|++.+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~ 87 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR----AQCPHCRAPLQLRELVNCRWAEEVTQQLD 87 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC----SBCTTTCCBCCGGGCEECTTHHHHHHHHH
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc----CCCCCCCCcCCHHHhHhhHHHHHHHHHHH
Confidence 47899999999999987899998665 3556665442 78999999999999999999888877653
No 19
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.13 E-value=0.014 Score=55.41 Aligned_cols=65 Identities=17% Similarity=0.357 Sum_probs=53.3
Q ss_pred eecCCcccccccccCCCCCcCccccc-cHHHHHHHhcCCCeeecCCCCCCCCCC-CeeehHhHHHHHhhcCC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCF-DLESYLQLNCERGSWRCPVCNKPAQLE-GLEVDQYMWGILNTLNN 247 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCF-DLeSFLq~n~qk~tWkCPIC~K~a~~e-dLiID~yL~eILk~L~~ 247 (854)
.|.|||-...+..|+. ..|.|.-|. -+..|+. .....||+|.+.+... .|..+..+.+|++.+..
T Consensus 78 ~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFK----AQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CCEeecCChhhcCCEE-cCCCCchhHHHHHHHHH----hCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 5799999999999998 699998664 3455554 2456899999999988 89999999999988753
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.05 E-value=0.0056 Score=50.63 Aligned_cols=65 Identities=29% Similarity=0.550 Sum_probs=48.4
Q ss_pred EEeecCCcccccccccCCCCCcCcccccc-HHHHHHHh-cCCCeeecCCCCCCCCCCCeeehHhHHHH
Q psy14745 176 KVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLN-CERGSWRCPVCNKPAQLEGLEVDQYMWGI 241 (854)
Q Consensus 176 ~ISLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n-~qk~tWkCPIC~K~a~~edLiID~yL~eI 241 (854)
.-.+.|||-...++.|+.- .|.|.=|.+ +..|+... ......+||+|++.+..++|..+..+.++
T Consensus 17 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred cCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 3458999999999999885 799987754 44555442 13457899999999999888877665443
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.04 E-value=0.013 Score=51.34 Aligned_cols=64 Identities=27% Similarity=0.593 Sum_probs=46.7
Q ss_pred ecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhc
Q psy14745 179 LKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTL 245 (854)
Q Consensus 179 LkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L 245 (854)
+.|||-...++.|+. ..|.|.=|.+ +..|+.. .....+||+|++.+...+|..+..+.++++.+
T Consensus 22 ~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~--~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~ 86 (112)
T 1jm7_A 22 LECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQ--KKGPSQCPLCKNDITKRSLQESTRFSQLVEEL 86 (112)
T ss_dssp TSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHS--SSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHH
T ss_pred CCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHh--CCCCCCCcCCCCcCCHhhcCccHHHHHHHHHH
Confidence 579999999999988 5899987653 4445542 23458999999999988887765555555443
No 22
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.69 E-value=0.015 Score=52.28 Aligned_cols=62 Identities=23% Similarity=0.522 Sum_probs=50.5
Q ss_pred eecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhcC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLN 246 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L~ 246 (854)
.|.|||-...++.|+.-..|.|.-|.. +..|+. ..||+|++.+...+|..+..+..++..+.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------TGCPVCYTPAWIQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------TBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------CCCcCCCCcCccccccccHHHHHHHHHHH
Confidence 478999999999999988899986643 333332 57999999999999999999998887653
No 23
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=94.67 E-value=0.024 Score=51.07 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=53.6
Q ss_pred eEEeecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhcC
Q psy14745 175 LKVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLN 246 (854)
Q Consensus 175 l~ISLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L~ 246 (854)
+.-.+.|||-...++.|+.. .|.|.=|.+ +..|+.... .+||+|++.+...++..|.++.++|..+.
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 15 LESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCC----CCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 44458999999999999885 799986653 345554432 38999999999999999999999998774
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.32 E-value=0.048 Score=43.96 Aligned_cols=52 Identities=19% Similarity=0.447 Sum_probs=40.3
Q ss_pred EEeecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCCe
Q psy14745 176 KVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGL 232 (854)
Q Consensus 176 ~ISLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~edL 232 (854)
.-.+.|||-...++.|+. ..|.|.-|.+ ++.|+. ....+||+|++.+..++|
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLS----SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHT----TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHH----hCcCCCCCCCcCCChhhc
Confidence 335889999999999999 6999986643 444543 456789999999888765
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.28 E-value=0.046 Score=45.74 Aligned_cols=61 Identities=18% Similarity=0.393 Sum_probs=46.0
Q ss_pred eecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhc
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTL 245 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L 245 (854)
.+.|||-...++.|+. ..|.|.-|++ +..|++. ..+||+|++.+. ..+..+..+.+.++..
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~-~~~~~~~~l~~~~~~~ 76 (81)
T 2csy_A 15 PFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA-----TPRCYICDQPTG-GIFNPAKELMAKLQKS 76 (81)
T ss_dssp CSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH-----CSBCSSSCCBCC-SCCEECHHHHHHHSSS
T ss_pred CCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC-----CCcCCCcCcccc-ccCCcHHHHHHHHHhh
Confidence 5799999999999997 6899986653 4455542 458999999987 6777776666666544
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=94.16 E-value=0.0051 Score=50.75 Aligned_cols=61 Identities=33% Similarity=0.585 Sum_probs=43.7
Q ss_pred eecCCcccccccccCCCCCcCccccccHHHHHHHhcC-----CCeeecCCCCCCCCCCCeeehHhHHHH
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCE-----RGSWRCPVCNKPAQLEGLEVDQYMWGI 241 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~q-----k~tWkCPIC~K~a~~edLiID~yL~eI 241 (854)
.+.|||-+..++.|+. ..|.|.=|. +-+.+.... ....+||+|++.+...+|..+..+.+|
T Consensus 12 ~~~C~IC~~~~~~p~~-l~CgH~fC~--~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 12 EVTCPICLELLTEPLS-LDCGHSLCR--ACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCEETTTTEECSSCCC-CSSSCCCCH--HHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred CCCCcCCCcccCCeeE-CCCCCHHHH--HHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 4789999999999988 479998553 333332222 347899999999998887776655433
No 27
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.81 E-value=0.056 Score=43.94 Aligned_cols=56 Identities=27% Similarity=0.650 Sum_probs=41.9
Q ss_pred eEEeecCCcccccccccCCCCCcCccccccHHHHHHHhcC-CCeeecCCCCCCCCCCCee
Q psy14745 175 LKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCE-RGSWRCPVCNKPAQLEGLE 233 (854)
Q Consensus 175 l~ISLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~q-k~tWkCPIC~K~a~~edLi 233 (854)
+.-.+.|||-+..++.|+.- .|.|.-| ..-+....+. ....+||+|++.+..++++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC--~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTI-DCGHNFC--LKCITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEEC-TTCCEEE--HHHHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEc-CCCChhh--HHHHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 34468999999999999887 8999855 4444444332 4567999999999888763
No 28
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=93.20 E-value=0.062 Score=50.88 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=53.7
Q ss_pred eeEEeecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhcC
Q psy14745 174 ALKVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLN 246 (854)
Q Consensus 174 sl~ISLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L~ 246 (854)
.+.-.|.|||-...++.|+. ..|.|.=|.+ +..|+.... .+||+|++.+...+|..|.++.++|..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCC----CCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 34446899999999999998 5799986643 444554332 29999999999999999999999988763
No 29
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=93.12 E-value=0.029 Score=49.96 Aligned_cols=65 Identities=22% Similarity=0.489 Sum_probs=49.3
Q ss_pred eecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCC-------CCeeehHhHHHHHhhcC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQL-------EGLEVDQYMWGILNTLN 246 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~-------edLiID~yL~eILk~L~ 246 (854)
.|.|||-...+..|+.- .|.|.=|.+ -+.... ......||+|++.+.. .++.+|..+.++++...
T Consensus 15 ~~~C~iC~~~~~~p~~~-~CgH~fC~~--Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL-PCNHTLCKP--CFQSTV-EKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp HHBCTTTCSBCSSCEEC-TTSCEECHH--HHCCCC-CTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCccCCcccCceeEc-CCCCHHhHH--HHHHHH-hHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 47899999999999987 799985543 222222 2345799999998864 78889999999987764
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=92.93 E-value=0.041 Score=45.62 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=39.5
Q ss_pred EEeecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCC
Q psy14745 176 KVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEG 231 (854)
Q Consensus 176 ~ISLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~ed 231 (854)
.-.+.|||-...++.|+.-..|.|.-|.+ +..|+... ...+||+|++.+...+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES---DEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS---SSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc---CCCcCCCCCCcCCCcc
Confidence 33589999999999999966699987753 55666542 3578999998754433
No 31
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.67 E-value=0.076 Score=43.60 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=42.0
Q ss_pred EeecCCcccccccccCCCCCcCccccc-cHHHHHHHhcCCCeeecCCCCCCCCCCCee
Q psy14745 177 VSLKCPITFKKITLPARGHDCKHIQCF-DLESYLQLNCERGSWRCPVCNKPAQLEGLE 233 (854)
Q Consensus 177 ISLkCPLS~~RIkiPVRG~~CkHLQCF-DLeSFLq~n~qk~tWkCPIC~K~a~~edLi 233 (854)
-.+.|||-...++.|+.-..|.|.-|. =+..|++. ..+||+|++.+...++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-----SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-----CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-----CCcCCCcCcccCccccc
Confidence 368999999999999998899998775 35666654 46899999998877654
No 32
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=91.65 E-value=0.11 Score=46.34 Aligned_cols=64 Identities=30% Similarity=0.510 Sum_probs=49.9
Q ss_pred eecCCcccccccccCCCCCcCccccc-cHHHHHHHhcCCCeeecCCCCCCCCCCCee-ehHhHHHHHhhcC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCF-DLESYLQLNCERGSWRCPVCNKPAQLEGLE-VDQYMWGILNTLN 246 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCF-DLeSFLq~n~qk~tWkCPIC~K~a~~edLi-ID~yL~eILk~L~ 246 (854)
.+.|||-...++.|+. ..|.|.-|. =+..|+... ...||+|++.+...+|+ .+..+.++++.+.
T Consensus 23 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~ 88 (116)
T 1rmd_A 23 SISCQICEHILADPVE-TSCKHLFCRICILRCLKVM----GSYCPSCRYPCFPTDLESPVKSFLNILNSLM 88 (116)
T ss_dssp HTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCBCCCHHHHHHHHHCE
T ss_pred CCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHC----cCcCCCCCCCCCHhhccccHHHHHHHHHHhc
Confidence 5789999999999999 589998664 345566542 34799999999888865 5777888887763
No 33
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=90.98 E-value=0.13 Score=47.46 Aligned_cols=61 Identities=23% Similarity=0.483 Sum_probs=43.5
Q ss_pred ecCCcccccccccCCCCCcCccccccH-HHHHHHhcCCCeeecCCCCCCCCCC--CeeehHhHHHHHhhc
Q psy14745 179 LKCPITFKKITLPARGHDCKHIQCFDL-ESYLQLNCERGSWRCPVCNKPAQLE--GLEVDQYMWGILNTL 245 (854)
Q Consensus 179 LkCPLS~~RIkiPVRG~~CkHLQCFDL-eSFLq~n~qk~tWkCPIC~K~a~~e--dLiID~yL~eILk~L 245 (854)
|.|||-...+..|+- ..|.|.=|.+- ..|+ . ..-.||+|.+.+... ++.+|..+..+++.+
T Consensus 54 ~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~---~--~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~~l 117 (138)
T 4ayc_A 54 LQCIICSEYFIEAVT-LNCAHSFCSYCINEWM---K--RKIECPICRKDIKSKTYSLVLDNCINKMVNNL 117 (138)
T ss_dssp SBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHT---T--TCSBCTTTCCBCCCEEECHHHHHHHHHHHTTS
T ss_pred CCCcccCcccCCceE-CCCCCCccHHHHHHHH---H--cCCcCCCCCCcCCCCCCccchhHHHHHHHHHh
Confidence 689999999999986 57999755533 3333 2 235799999887543 567777777777655
No 34
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=89.20 E-value=0.075 Score=50.00 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=56.6
Q ss_pred eeeeEEeecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCC---------CeeehHhHHHH
Q psy14745 172 QTALKVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLE---------GLEVDQYMWGI 241 (854)
Q Consensus 172 ~tsl~ISLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~e---------dLiID~yL~eI 241 (854)
+..+.-.|.|||-...++.|+. ..|.|.=|.. +..|+ +....+||+|.+.+.++ ++..|.++.++
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~----~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~ 99 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASIL----SSGPQNCAACVHEGIYEEGISILESSSAFPDNAARRE 99 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHG----GGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHH
T ss_pred hccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHH----hcCCCCCCCCCCcccccccccccchhhhcccHHHHHH
Confidence 3445567899999999999988 5899985543 33344 23457899999876443 56688899888
Q ss_pred HhhcCCCCceEEEEcCCCcEeeC
Q psy14745 242 LNTLNNSEVEEVTIDATANWRVP 264 (854)
Q Consensus 242 Lk~L~~sdVeeV~Vd~DGSWrp~ 264 (854)
|..|. |.-. .....|...
T Consensus 100 i~~L~---v~Cp--n~GC~~~~~ 117 (141)
T 3knv_A 100 VESLP---AVCP--SDGCTWKGT 117 (141)
T ss_dssp HHTSE---EECC--STTCCCEEE
T ss_pred Hcccc---cccC--CCCCCCEeE
Confidence 88763 2211 145666653
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.40 E-value=0.46 Score=38.08 Aligned_cols=52 Identities=27% Similarity=0.554 Sum_probs=38.2
Q ss_pred ecCCcccc-cccccCC---CCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCCeee
Q psy14745 179 LKCPITFK-KITLPAR---GHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGLEV 234 (854)
Q Consensus 179 LkCPLS~~-RIkiPVR---G~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~edLiI 234 (854)
+.|||-.. .+..|++ ...|.|.=|.+ ++.|+. +...+||+|++.+..++|+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----RGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----TTSSSCTTTCCCCSSCCCEE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----cCCCcCCCCCCcccccccee
Confidence 57999999 8888875 46899986643 334432 23578999999998887754
No 36
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.40 E-value=0.46 Score=39.64 Aligned_cols=51 Identities=33% Similarity=0.671 Sum_probs=37.1
Q ss_pred eecCCcccccccc----cCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCC
Q psy14745 178 SLKCPITFKKITL----PARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEG 231 (854)
Q Consensus 178 SLkCPLS~~RIki----PVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~ed 231 (854)
.+.|||-...+.. |+.- .|.|.=|.+ +..|+... ....+||+|++.+...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS--INGVRCPFCSKITRITS 70 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC--SSCBCCTTTCCCBCCSS
T ss_pred CCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC--CCCcCCCCCCCcccchh
Confidence 4789999998887 6654 799986643 44555432 35689999999887654
No 37
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=86.11 E-value=0.44 Score=39.29 Aligned_cols=52 Identities=23% Similarity=0.478 Sum_probs=36.6
Q ss_pred eecCCcccccccccCC--CCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCCeee
Q psy14745 178 SLKCPITFKKITLPAR--GHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGLEV 234 (854)
Q Consensus 178 SLkCPLS~~RIkiPVR--G~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~edLiI 234 (854)
.+.|+|-+..+..+.. -..|.|.=|++ +..|++. ..+||+|++.+...++..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-----HDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-----TCSCTTTCCCCCCSCSCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-----CCcCcCcCCccCCcccCC
Confidence 4689999888876543 35799976654 4566632 258999999988776643
No 38
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=85.99 E-value=0.29 Score=38.38 Aligned_cols=50 Identities=24% Similarity=0.555 Sum_probs=36.4
Q ss_pred ecCCcccccccccC------CCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCCee
Q psy14745 179 LKCPITFKKITLPA------RGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGLE 233 (854)
Q Consensus 179 LkCPLS~~RIkiPV------RG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~edLi 233 (854)
+.|||-...+..|. ....|.|.=|.+ ++.|++. ..+||+|++.+..++++
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-----CSBCTTTCCBCTTTCEE
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-----CCCCCCCCccCCcccee
Confidence 57888888888774 556899985543 4456543 35899999998877764
No 39
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=85.37 E-value=0.35 Score=38.90 Aligned_cols=50 Identities=24% Similarity=0.519 Sum_probs=36.8
Q ss_pred ecCCcccccccccC------CCCCcCccccc-cHHHHHHHhcCCCeeecCCCCCCCCCCCee
Q psy14745 179 LKCPITFKKITLPA------RGHDCKHIQCF-DLESYLQLNCERGSWRCPVCNKPAQLEGLE 233 (854)
Q Consensus 179 LkCPLS~~RIkiPV------RG~~CkHLQCF-DLeSFLq~n~qk~tWkCPIC~K~a~~edLi 233 (854)
+.|||=...+..|+ +...|.|.=|. =+..|+... -+||+|++.+..++++
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----NTCPTCRKKINHKRYH 67 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCCBCCCCSCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-----CCCCCCCCccChhhee
Confidence 57999999988874 56789998664 345566432 3899999998877653
No 40
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.92 E-value=0.2 Score=40.99 Aligned_cols=47 Identities=21% Similarity=0.504 Sum_probs=33.5
Q ss_pred ecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCC
Q psy14745 179 LKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLE 230 (854)
Q Consensus 179 LkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~e 230 (854)
+.|+|=...++.|+.- .|.|.-|+ +-+...... ..+||+|++.+..+
T Consensus 16 ~~C~IC~~~~~~~~~~-~CgH~fC~--~Ci~~~~~~--~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 16 PECAICLQTCVHPVSL-PCKHVFCY--LCVKGASWL--GKRCALCRQEIPED 62 (71)
T ss_dssp CBCSSSSSBCSSEEEE-TTTEEEEH--HHHHHCTTC--SSBCSSSCCBCCHH
T ss_pred CCCccCCcccCCCEEc-cCCCHHHH--HHHHHHHHC--CCcCcCcCchhCHh
Confidence 6899999999999876 59998554 333332222 36999999887543
No 41
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=83.14 E-value=0.77 Score=36.76 Aligned_cols=45 Identities=24% Similarity=0.673 Sum_probs=34.1
Q ss_pred ecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCC
Q psy14745 179 LKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQ 228 (854)
Q Consensus 179 LkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~ 228 (854)
..|+|-...++.|++...|.|.=|++ +..|+... .+||+|++.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-----PTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-----CSTTTTCCCCC
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-----CcCcCCChhhH
Confidence 47899888888888888899986654 44566432 58999998764
No 42
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.74 E-value=1 Score=35.76 Aligned_cols=46 Identities=28% Similarity=0.688 Sum_probs=34.6
Q ss_pred eEEeecCCcccccccccCCCCCcCccccc-cHHHHHHHhcCCCeeecCCC
Q psy14745 175 LKVSLKCPITFKKITLPARGHDCKHIQCF-DLESYLQLNCERGSWRCPVC 223 (854)
Q Consensus 175 l~ISLkCPLS~~RIkiPVRG~~CkHLQCF-DLeSFLq~n~qk~tWkCPIC 223 (854)
+.-.+.|||-...++.|+.- .|.|.-|. =++.|++. .....+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET--SCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH--CSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc--CCCCCcCcCC
Confidence 44468999999999999987 89998664 34555543 3356789998
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.33 E-value=2 Score=33.06 Aligned_cols=43 Identities=21% Similarity=0.521 Sum_probs=31.6
Q ss_pred eecCCcccccccccCCCCCcCccccccHHHHHHHhc-CCCeeecCCC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNC-ERGSWRCPVC 223 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~-qk~tWkCPIC 223 (854)
.+.|||=...++.|+. ..|.|.-| .+-+.+... .....+||+|
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC--~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVI-IECGHNFC--KACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCC-CSSCCCCC--HHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCccEe-CCCCCccC--HHHHHHHHHhcCCCCCCCCC
Confidence 5789999999999988 57999854 444444433 2457899998
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=79.84 E-value=0.97 Score=39.92 Aligned_cols=50 Identities=24% Similarity=0.581 Sum_probs=36.3
Q ss_pred ecCCcccccccccC------CCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCCee
Q psy14745 179 LKCPITFKKITLPA------RGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGLE 233 (854)
Q Consensus 179 LkCPLS~~RIkiPV------RG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~edLi 233 (854)
+.|||=...++.|+ +...|.|.=|.+ +..||. . .-+||+|++.+...++.
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~--~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---N--ANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT---T--CSBCTTTCCBCTTTCEE
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH---h--CCCCCCCCCcCcccccc
Confidence 68999999999884 567899975543 344443 2 23999999998776654
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.06 E-value=0.92 Score=37.26 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=31.8
Q ss_pred ecCCccccccccc--CCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCC
Q psy14745 179 LKCPITFKKITLP--ARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQL 229 (854)
Q Consensus 179 LkCPLS~~RIkiP--VRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~ 229 (854)
..|+|=+..+..+ ++...|.|.=|++ +..||..+ ..||+|++.+..
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----RTCPICRADSGP 72 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----SSCTTTCCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----CcCcCcCCcCCC
Confidence 4678877777665 4555688876654 56677543 489999988765
No 46
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=78.58 E-value=1.5 Score=33.46 Aligned_cols=44 Identities=32% Similarity=0.702 Sum_probs=29.2
Q ss_pred cCCcccccccc---cCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCC
Q psy14745 180 KCPITFKKITL---PARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQ 228 (854)
Q Consensus 180 kCPLS~~RIki---PVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~ 228 (854)
.|+|-+..+.. +++-..|.|.=|.+ +..|++.. .+||+|++.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----YRCPLCSGPSS 54 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----CCCTTSCCSSC
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----CcCCCCCCcCC
Confidence 57777666643 45556688875554 45666543 78999998753
No 47
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.98 E-value=1.3 Score=36.07 Aligned_cols=46 Identities=24% Similarity=0.483 Sum_probs=32.2
Q ss_pred eecCCcccccccccCCCC--CcCcccccc-HHHHHHHhcCCCeeecCCCCCCCC
Q psy14745 178 SLKCPITFKKITLPARGH--DCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQ 228 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~--~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~ 228 (854)
...|+|=+..+..+.+-. .|.|.=|++ +..||... .+||+|++.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----KVCPLCNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----SBCTTTCCBCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----CcCCCcCcccc
Confidence 457999888887765543 799985543 45666542 28999998764
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.16 E-value=1.8 Score=34.18 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=32.2
Q ss_pred ecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCCC
Q psy14745 179 LKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEG 231 (854)
Q Consensus 179 LkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~ed 231 (854)
|.|+|=...++.|+. ..|.|.-|.+-- .....+||+|++.+....
T Consensus 7 ~~C~IC~~~~~~p~~-l~CgH~fC~~Ci-------~~~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 7 LRCQQCQAEAKCPKL-LPCLHTLCSGCL-------EASGMQCPICQAPWPLGA 51 (56)
T ss_dssp SSCSSSCSSCBCCSC-STTSCCSBTTTC-------SSSSSSCSSCCSSSSCCS
T ss_pred CCceEeCCccCCeEE-cCCCCcccHHHH-------ccCCCCCCcCCcEeecCC
Confidence 679999999999866 459997554321 113568999999887654
No 49
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.20 E-value=1.5 Score=34.74 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=33.2
Q ss_pred eecCCcccccccccC------CCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCC
Q psy14745 178 SLKCPITFKKITLPA------RGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQ 228 (854)
Q Consensus 178 SLkCPLS~~RIkiPV------RG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~ 228 (854)
.+.|+|-+..+..|+ ....|.|.=|.+ ++.|+.. ..+||+|++.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-----CSSCTTTCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-----CCCCCCCCCccC
Confidence 468999999988884 446899975543 4455543 348999998865
No 50
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=70.66 E-value=2.6 Score=32.28 Aligned_cols=45 Identities=16% Similarity=0.403 Sum_probs=27.4
Q ss_pred ecCCcccccccc---cCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCC
Q psy14745 179 LKCPITFKKITL---PARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQ 228 (854)
Q Consensus 179 LkCPLS~~RIki---PVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~ 228 (854)
..|+|-...++. +++-..|.|.=|.+ +..|++ ...+||+|++.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-----SHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-----TCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-----cCCcCcCCCCEeE
Confidence 357777666655 44444688874443 234442 2468999998764
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=69.84 E-value=5.8 Score=33.91 Aligned_cols=51 Identities=18% Similarity=0.456 Sum_probs=33.7
Q ss_pred ecCCccccccccc-CCCCC--cCccccccHHHHHHHhcCCCeeecCCCCCCCCCCCe
Q psy14745 179 LKCPITFKKITLP-ARGHD--CKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGL 232 (854)
Q Consensus 179 LkCPLS~~RIkiP-VRG~~--CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~edL 232 (854)
+.|||=...+.+. .+... |.|.=|.+ -|..+.. ....+||+|++.+....+
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~--Cl~~~~~-~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRF--CWHRIRT-DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHH--HHHHHTT-SSCSBCTTTCCBCSSCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHH--HHHHHHh-cCCCCCCCCCCccCCCch
Confidence 6799988877653 33333 99985543 3333332 256899999999877655
No 52
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=65.22 E-value=3.6 Score=32.96 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=29.9
Q ss_pred ecCCccccccc--ccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCC
Q psy14745 179 LKCPITFKKIT--LPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQL 229 (854)
Q Consensus 179 LkCPLS~~RIk--iPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~ 229 (854)
..|+|=+..+. ..++...|.|.=|++ +..|+... .+||+|++.+..
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-----KKCPICRVDIEA 63 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCSBSCS
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-----CCCcCcCccccC
Confidence 46888776664 345556799985543 45566542 369999987654
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=63.47 E-value=4.8 Score=35.33 Aligned_cols=49 Identities=24% Similarity=0.465 Sum_probs=32.0
Q ss_pred cCCcccccccccC-----------------CCCCcCccccc-cHHHHHHHhcCCCeeecCCCCCCCC
Q psy14745 180 KCPITFKKITLPA-----------------RGHDCKHIQCF-DLESYLQLNCERGSWRCPVCNKPAQ 228 (854)
Q Consensus 180 kCPLS~~RIkiPV-----------------RG~~CkHLQCF-DLeSFLq~n~qk~tWkCPIC~K~a~ 228 (854)
.|+|=...+..|+ +-..|.|.=|+ =|..||....+...-.||+|++.+.
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4666666665543 24568887543 2557776554456789999997764
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.78 E-value=3.9 Score=33.89 Aligned_cols=43 Identities=19% Similarity=0.439 Sum_probs=31.2
Q ss_pred eecCCcccccccccCCCCCcCcc-ccccHHHHHHHhcCCCeeecCCCCCCCCC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHI-QCFDLESYLQLNCERGSWRCPVCNKPAQL 229 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHL-QCFDLeSFLq~n~qk~tWkCPIC~K~a~~ 229 (854)
.+.|+|=+..++.|+. ..|.|. -|.+-.. ...+||+|++.+..
T Consensus 25 ~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVF-VPCGHLVTCKQCAE--------AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCC-SSSCCCCBCHHHHH--------HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEE-ecCCCHHHHHHHhh--------CCCCCccCCceecC
Confidence 4579999888888876 579998 5654431 23799999987643
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=57.47 E-value=3.2 Score=36.59 Aligned_cols=50 Identities=24% Similarity=0.546 Sum_probs=37.1
Q ss_pred ecCCcccccccccC------CCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCCee
Q psy14745 179 LKCPITFKKITLPA------RGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGLE 233 (854)
Q Consensus 179 LkCPLS~~RIkiPV------RG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~edLi 233 (854)
+.|+|=...++.|+ +-..|.|.=|++ ++.||+.. ..||+|++.+..++|+
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----NTCPTCRKKINHKRYH 129 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-----SBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-----CCCCCCCCcCChhcce
Confidence 56888888887763 445799987764 56777543 4899999998877654
No 56
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.88 E-value=2 Score=34.56 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=32.5
Q ss_pred eecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCCC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEG 231 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~ed 231 (854)
.+.|+|=...+.. ....|.|.-| .+-+.+... ...+||+|++.+...+
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc--~~Ci~~~~~--~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFC--QKCIDKWSD--RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEEC--HHHHHHSSC--CCSSCHHHHHCTTCCC
T ss_pred CCCCeeCCcCccC--cccCCCCccc--HHHHHHHHH--CcCcCCCcCCcccCCC
Confidence 4689998888777 5567999844 333333222 5678999998876543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=55.83 E-value=2.8 Score=34.84 Aligned_cols=41 Identities=20% Similarity=0.432 Sum_probs=28.4
Q ss_pred ecCCcccccccccCCCCCcCcc-ccccHHHHHHHhcCCCeeecCCCCCCCC
Q psy14745 179 LKCPITFKKITLPARGHDCKHI-QCFDLESYLQLNCERGSWRCPVCNKPAQ 228 (854)
Q Consensus 179 LkCPLS~~RIkiPVRG~~CkHL-QCFDLeSFLq~n~qk~tWkCPIC~K~a~ 228 (854)
+.|+|=...++.|+.- .|.|. -|++-.. ..++||+|++.+.
T Consensus 25 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~--------~~~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFV-PCGHLVTCKQCAE--------AVDKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBCCEEEE-TTCCBCCCHHHHT--------TCSBCTTTCCBCS
T ss_pred CCCCCCCCCCCCEEEc-CCCChhHHHHhhh--------cCccCCCcCcCcc
Confidence 4788888877777653 68888 5554421 1189999998764
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.77 E-value=5.2 Score=33.78 Aligned_cols=33 Identities=21% Similarity=0.489 Sum_probs=19.6
Q ss_pred CcCccccccHHHHHHHhcCCCeeecCCCCCCCCCCCe
Q psy14745 196 DCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGL 232 (854)
Q Consensus 196 ~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~edL 232 (854)
.|.|. |-.+-+.+-.++. -.||+|++.+.++++
T Consensus 47 ~C~H~--FH~~Ci~~Wl~~~--~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 47 ECNHS--FHNCCMSLWVKQN--NRCPLCQQDWVVQRI 79 (81)
T ss_dssp TTSCE--EEHHHHHHHTTTC--CBCTTTCCBCCEEEE
T ss_pred CCCCc--cChHHHHHHHHhC--CCCCCcCCCcchhhc
Confidence 58886 5433333322222 289999998766543
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=51.00 E-value=6.5 Score=31.99 Aligned_cols=45 Identities=27% Similarity=0.493 Sum_probs=28.6
Q ss_pred cCCcccccccccCC-CCCcCcc-ccccHHHHHHHhcCCCeeecCCCCCCCC
Q psy14745 180 KCPITFKKITLPAR-GHDCKHI-QCFDLESYLQLNCERGSWRCPVCNKPAQ 228 (854)
Q Consensus 180 kCPLS~~RIkiPVR-G~~CkHL-QCFDLeSFLq~n~qk~tWkCPIC~K~a~ 228 (854)
.|+|=+.+.+.++- ...|.|+ -|++-..-+.. ..++||+|++.+.
T Consensus 10 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~i~ 56 (64)
T 2vje_A 10 PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK----RNKPCPVCRQPIQ 56 (64)
T ss_dssp CCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH----TTCCCTTTCCCCC
T ss_pred CCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH----cCCcCCCcCcchh
Confidence 57777776666653 2369998 46654433221 3478999998863
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=50.60 E-value=6.4 Score=31.92 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=27.4
Q ss_pred cCCcccccccccCC-CCCcCcc-ccccHHHHHHHhcCCCeeecCCCCCCC
Q psy14745 180 KCPITFKKITLPAR-GHDCKHI-QCFDLESYLQLNCERGSWRCPVCNKPA 227 (854)
Q Consensus 180 kCPLS~~RIkiPVR-G~~CkHL-QCFDLeSFLq~n~qk~tWkCPIC~K~a 227 (854)
.|+|-+.+.+.++= ...|.|+ -|++-..-+. + ..++||+|.+.+
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~--~--~~~~CPiCR~~i 54 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK--K--AGASCPICKKEI 54 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH--H--TTCBCTTTCCBC
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH--H--hCCcCCCcCchh
Confidence 56766666554431 2368898 5665544332 2 238999999886
No 61
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=50.38 E-value=2 Score=35.89 Aligned_cols=33 Identities=18% Similarity=0.533 Sum_probs=19.1
Q ss_pred ccCCCCC--cCccccccHHHHHHHhcCCCeeecCCCCCC
Q psy14745 190 LPARGHD--CKHIQCFDLESYLQLNCERGSWRCPVCNKP 226 (854)
Q Consensus 190 iPVRG~~--CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~ 226 (854)
.|+|-+. |+-.- .-|.++....++|+|++|...
T Consensus 8 ~pvRC~r~~Crayl----NP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 8 EPVLCSRTTCRAVL----NPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp CCCBCSCTTTCCBC----CTTSEEEGGGTEEECSSSCCE
T ss_pred CCcccCCCCCCeEE----CCceEEECCCCEEEcccCCCc
Confidence 4677665 76431 111222234579999999854
No 62
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=48.42 E-value=8.7 Score=32.93 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=27.1
Q ss_pred ecCCcccccccc--cCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCC
Q psy14745 179 LKCPITFKKITL--PARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQL 229 (854)
Q Consensus 179 LkCPLS~~RIki--PVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~ 229 (854)
..|+|-...+.. .++...|.|.=|++ +..||.. .-.||+|.+.+..
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-----SGTCPVCRCMFPP 89 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-----TCBCTTTCCBSSC
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-----CCcCcCcCccCCC
Confidence 457776655543 23334588864432 4556532 2389999987654
No 63
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=42.55 E-value=5.6 Score=42.83 Aligned_cols=44 Identities=18% Similarity=0.457 Sum_probs=31.9
Q ss_pred EEeecCCcccccccccCCCCCcCcc-ccccHHHHHHHhcCCCeeecCCCCCCCC
Q psy14745 176 KVSLKCPITFKKITLPARGHDCKHI-QCFDLESYLQLNCERGSWRCPVCNKPAQ 228 (854)
Q Consensus 176 ~ISLkCPLS~~RIkiPVRG~~CkHL-QCFDLeSFLq~n~qk~tWkCPIC~K~a~ 228 (854)
.-.+.|+|-...+..|+.- .|.|. =|.+-.. ..++||+|.+.+.
T Consensus 293 ~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~--------~~~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFI-PCGHLVVCQECAP--------SLRKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGG--------GCSBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEEc-CCCChhHhHHHHh--------cCCcCCCCCCCcc
Confidence 3357899999998888775 78888 5544322 1179999998764
No 64
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=39.52 E-value=9.7 Score=41.98 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=35.6
Q ss_pred eecCCcccccccccCCCCCcCcccccc-HHHHHHHhcCCCeeecCCCCCCCCCCC
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEG 231 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFD-LeSFLq~n~qk~tWkCPIC~K~a~~ed 231 (854)
.+.|+|-...++.|+. ..|.|.=|.+ +..|+.. ..-+||+|.+.+....
T Consensus 332 ~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~----~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQES----EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHH----TCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhc----CCCCCCCCCCccCCce
Confidence 3689999999888866 5799986654 3455542 3458999998876554
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.36 E-value=18 Score=29.84 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=24.8
Q ss_pred ecCCcccccccccCCCCCcCcc-ccccHHHHHHHhcCCCeeecCCCCCCCC
Q psy14745 179 LKCPITFKKITLPARGHDCKHI-QCFDLESYLQLNCERGSWRCPVCNKPAQ 228 (854)
Q Consensus 179 LkCPLS~~RIkiPVRG~~CkHL-QCFDLeSFLq~n~qk~tWkCPIC~K~a~ 228 (854)
..|+|=+.+.+.++ ...|.|+ -|.+-.. ..++||+|.+.+.
T Consensus 16 ~~C~IC~~~~~~~v-~~pCgH~~~C~~C~~--------~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 16 KDCVVCQNGTVNWV-LLPCRHTCLCDGCVK--------YFQQCPMCRQFVQ 57 (68)
T ss_dssp SCCSSSSSSCCCCE-ETTTTBCCSCTTHHH--------HCSSCTTTCCCCC
T ss_pred CCCCCcCcCCCCEE-EECCCChhhhHHHHh--------cCCCCCCCCcchh
Confidence 45777666544322 2457777 4554433 1489999998764
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=35.36 E-value=9.1 Score=32.48 Aligned_cols=41 Identities=20% Similarity=0.401 Sum_probs=26.2
Q ss_pred cCCcccccccccCCCCCcCcc-ccccHHHHHHHhcCCCeeecCCCCCCCCC
Q psy14745 180 KCPITFKKITLPARGHDCKHI-QCFDLESYLQLNCERGSWRCPVCNKPAQL 229 (854)
Q Consensus 180 kCPLS~~RIkiPVRG~~CkHL-QCFDLeSFLq~n~qk~tWkCPIC~K~a~~ 229 (854)
.|+|=..+.+.++- ..|.|. -|++-.. ..|+||+|.+.+.-
T Consensus 20 ~C~IC~~~~~~~v~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 20 LCMVCCEEEINSTF-CPCGHTVCCESCAA--------QLQSCPVCRSRVEH 61 (79)
T ss_dssp BCTTTSSSBCCEEE-ETTCBCCBCHHHHT--------TCSBCTTTCCBCCE
T ss_pred EeEEeCcccCcEEE-ECCCCHHHHHHHHH--------hcCcCCCCCchhhC
Confidence 56766666665544 368887 4554321 33799999987643
No 67
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=34.01 E-value=13 Score=32.98 Aligned_cols=10 Identities=40% Similarity=1.451 Sum_probs=9.0
Q ss_pred CCeeecCCCC
Q psy14745 215 RGSWRCPVCN 224 (854)
Q Consensus 215 k~tWkCPIC~ 224 (854)
..+|.||||.
T Consensus 15 ~~tWVCpICs 24 (76)
T 2j9u_B 15 VSTWVCPICM 24 (76)
T ss_dssp CEEEECTTTC
T ss_pred ccceECcccc
Confidence 4689999999
No 68
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=32.16 E-value=35 Score=41.72 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=50.8
Q ss_pred eecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhh
Q psy14745 178 SLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNT 244 (854)
Q Consensus 178 SLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~ 244 (854)
.+.||||...|+-||--..-+ +.||-.++...-...+ .||+-++++..++|+-+.-+++.+++
T Consensus 891 ~F~cPIs~~lM~DPVilpsG~--~TydR~~I~~wl~~~~--tdP~Tr~~L~~~~liPN~~Lk~~I~~ 953 (968)
T 3m62_A 891 EFLDPLMYTIMKDPVILPASK--MNIDRSTIKAHLLSDS--TDPFNRMPLKLEDVTPNEELRQKILC 953 (968)
T ss_dssp GGBCTTTCSBCSSEEECTTTC--CEEEHHHHHHHHTTCC--BCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred HhCCcchhhHHhCCeEcCCCC--EEECHHHHHHHHhcCC--CCCCCCCCCCcccccccHHHHHHHHH
Confidence 579999999999999843322 3799988887665533 79999999999999998888877765
No 69
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=31.48 E-value=7.7 Score=46.84 Aligned_cols=32 Identities=25% Similarity=0.620 Sum_probs=20.5
Q ss_pred ccCCCCCcCcc-ccccHHHHHHHhcCCCeeecCCCCCC
Q psy14745 190 LPARGHDCKHI-QCFDLESYLQLNCERGSWRCPVCNKP 226 (854)
Q Consensus 190 iPVRG~~CkHL-QCFDLeSFLq~n~qk~tWkCPIC~K~ 226 (854)
.|+|.+.|+-. .+| .++....++|+|++|+..
T Consensus 227 ~pvRC~rCrAYiNPf-----~~~~~~g~~W~CnfC~~~ 259 (926)
T 1m2v_B 227 LIVRCRRCRSYMNPF-----VTFIEQGRRWRCNFCRLA 259 (926)
T ss_dssp CCCBCSSSCCBCCTT-----CEEETTTTEEECTTTCCE
T ss_pred CCCccCCccCEecCc-----eEEeCCCCEEEccCCCCC
Confidence 48888888743 122 122234679999999954
No 70
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=31.24 E-value=13 Score=29.70 Aligned_cols=12 Identities=42% Similarity=1.243 Sum_probs=9.6
Q ss_pred CCeeecCCCCCC
Q psy14745 215 RGSWRCPVCNKP 226 (854)
Q Consensus 215 k~tWkCPIC~K~ 226 (854)
...|+||+|+..
T Consensus 28 P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 28 PDDWCCPVCGVS 39 (46)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 457999999953
No 71
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=30.22 E-value=8.1 Score=45.79 Aligned_cols=32 Identities=25% Similarity=0.620 Sum_probs=20.3
Q ss_pred ccCCCCCcCcc-ccccHHHHHHHhcCCCeeecCCCCCC
Q psy14745 190 LPARGHDCKHI-QCFDLESYLQLNCERGSWRCPVCNKP 226 (854)
Q Consensus 190 iPVRG~~CkHL-QCFDLeSFLq~n~qk~tWkCPIC~K~ 226 (854)
.|+|.+.|+-. .+| .++....++|+|++|+..
T Consensus 111 ~pvRC~~CrayiNPf-----~~~~~~g~~W~C~~C~~~ 143 (810)
T 1pcx_A 111 LIVRCRRCRSYMNPF-----VTFIEQGRRWRCNFCRLA 143 (810)
T ss_dssp CCCBCTTTCCBCCTT-----CEEETTTTEEECTTTCCE
T ss_pred CCCccCCccCEecCc-----eEEeCCCCEEEccCCCCc
Confidence 38888888743 112 112234679999999954
No 72
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=29.88 E-value=7.5 Score=45.88 Aligned_cols=33 Identities=27% Similarity=0.618 Sum_probs=20.7
Q ss_pred ccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCC
Q psy14745 190 LPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKP 226 (854)
Q Consensus 190 iPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~ 226 (854)
.|+|.+.|+-.-+ -|.++....++|+|++|+..
T Consensus 97 ~pvRC~rCrayiN----Pf~~f~~~g~~w~Cn~C~~~ 129 (770)
T 3efo_B 97 GPVRCNRCKAYMC----PFMQFIEGGRRYQCGFCNCV 129 (770)
T ss_dssp CSCBCTTTCCBSC----TTCEEEGGGTEEECTTTCCE
T ss_pred CCCccCCCCCCcC----CceEEecCCCEEEecccccc
Confidence 4788888875411 12222234579999999854
No 73
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=28.10 E-value=8.2 Score=45.51 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=20.9
Q ss_pred cccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCC
Q psy14745 189 TLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKP 226 (854)
Q Consensus 189 kiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~ 226 (854)
..|+|.+.|+-.-+ -|.++....++|+|++|+..
T Consensus 92 ~~pvRC~rCrayiN----Pf~~f~~~g~~w~Cn~C~~~ 125 (766)
T 3eh2_A 92 SGPLRCNRCKAYMC----PFMQFIEGGRRFQCCFCSCI 125 (766)
T ss_dssp GCCCBCTTTCCBCC----TTCEEEGGGTEEECTTTCCE
T ss_pred CCCCccCCCCCEeC----CceEEecCCCEEEecccccc
Confidence 35788888875411 11222234579999999954
No 74
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=27.55 E-value=26 Score=31.56 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=19.3
Q ss_pred CCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCC
Q psy14745 193 RGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLE 230 (854)
Q Consensus 193 RG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~e 230 (854)
+-..|.|. |-..-+..-... .-.||+|++...+.
T Consensus 69 ~~~~C~H~--FH~~Ci~~Wl~~--~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 69 AWGVCNHA--FHFHCISRWLKT--RQVCPLDNREWEFQ 102 (106)
T ss_dssp EEETTSCE--EEHHHHHHHHTT--CSBCSSSCSBCCEE
T ss_pred eecccCcE--ECHHHHHHHHHc--CCcCcCCCCcceee
Confidence 33468876 443333332222 35799999886543
No 75
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=26.50 E-value=11 Score=44.25 Aligned_cols=34 Identities=32% Similarity=0.776 Sum_probs=20.3
Q ss_pred ccCCCCC--cCccccccHHHHHHHhcCCCeeecCCCCCCC
Q psy14745 190 LPARGHD--CKHIQCFDLESYLQLNCERGSWRCPVCNKPA 227 (854)
Q Consensus 190 iPVRG~~--CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a 227 (854)
-|+|.+. |+-.- .-|.++....++|+|++|+..-
T Consensus 52 ~pvRC~~~~Crayi----NPf~~~~~~~~~W~C~~C~~~N 87 (768)
T 1m2o_A 52 NPVVCSGPHCKSIL----NPYCVIDPRNSSWSCPICNSRN 87 (768)
T ss_dssp CCCBCCSTTTCCBC----CTTSCEETTTTEECCTTTCCCC
T ss_pred CCCccCCCCCCeEE----CCceEEeCCCCEEEcccCCCCC
Confidence 4788777 76431 1111222346799999999653
No 76
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.18 E-value=20 Score=29.48 Aligned_cols=12 Identities=33% Similarity=1.030 Sum_probs=9.8
Q ss_pred CCeeecCCCCCC
Q psy14745 215 RGSWRCPVCNKP 226 (854)
Q Consensus 215 k~tWkCPIC~K~ 226 (854)
...|+||+|+..
T Consensus 34 P~dw~CP~Cga~ 45 (55)
T 2v3b_B 34 PADWVCPDCGVG 45 (55)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 467999999964
No 77
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=25.95 E-value=21 Score=29.10 Aligned_cols=12 Identities=42% Similarity=1.323 Sum_probs=9.8
Q ss_pred CCeeecCCCCCC
Q psy14745 215 RGSWRCPVCNKP 226 (854)
Q Consensus 215 k~tWkCPIC~K~ 226 (854)
...|+||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 467999999964
No 78
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=25.68 E-value=11 Score=44.26 Aligned_cols=33 Identities=18% Similarity=0.533 Sum_probs=20.1
Q ss_pred ccCCCCC--cCccccccHHHHHHHhcCCCeeecCCCCCC
Q psy14745 190 LPARGHD--CKHIQCFDLESYLQLNCERGSWRCPVCNKP 226 (854)
Q Consensus 190 iPVRG~~--CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~ 226 (854)
-|+|.+. |+-.- .-|.++....++|+|++|+..
T Consensus 61 ~pvRC~~~~Crayi----NPf~~~~~~~~~W~C~~C~~~ 95 (769)
T 2nut_A 61 EPVLCSRTTCRAVL----NPLCQVDYRAKLWACNFCYQR 95 (769)
T ss_dssp CCCBCSSTTCCCBC----CTTSEEETTTTEEECSSSCCE
T ss_pred CCCcCCCCCCCeEE----CCceEEeCCCCEEEccCCCCC
Confidence 4888777 76431 111122234679999999965
No 79
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3
Probab=25.58 E-value=37 Score=41.41 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=29.2
Q ss_pred ceEEEEcCeeccccCCCCCCCCCC--ccccccccCcccEEEEEEe
Q psy14745 70 SVQVSVNATPLMIDRGENKTSHRP--LYLKEVCQPGRNTIQITVS 112 (854)
Q Consensus 70 ~I~IsVNgkpV~I~RgenKrsDrP--VdIT~lcrpGrNtIqIT~s 112 (854)
..+|.|||+.|-. +.+...| ++||++++.|+|+|.|.+.
T Consensus 150 ~a~V~vNG~~VG~----~~gg~~p~~~DIT~~Lk~G~N~L~V~V~ 190 (1024)
T 1yq2_A 150 RYKVWVNGQEIGV----GSGSRLAQEFDVSDALRAGSNLLVVRVH 190 (1024)
T ss_dssp CEEEEETTEEEEE----ECCTTSCEEEECTTTCCSEEEEEEEEEE
T ss_pred eEEEEECCEEEEE----EeCCccceEEecHHhccCCCcEEEEEEE
Confidence 4789999987532 2233344 6899999999999999984
No 80
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=25.53 E-value=19 Score=33.29 Aligned_cols=45 Identities=29% Similarity=0.592 Sum_probs=32.7
Q ss_pred cCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCC
Q psy14745 180 KCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPA 227 (854)
Q Consensus 180 kCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a 227 (854)
-|+.-...|++=+|-..|+|.=|||-..-.. ++..-.||.|+..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~---~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHE---KKGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHH---HTTCCBCTTTCCBC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHH---hccCCCCcCcCCee
Confidence 3666677788888999999998888764332 23345799999664
No 81
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=25.45 E-value=19 Score=29.66 Aligned_cols=12 Identities=33% Similarity=1.149 Sum_probs=9.7
Q ss_pred CCeeecCCCCCC
Q psy14745 215 RGSWRCPVCNKP 226 (854)
Q Consensus 215 k~tWkCPIC~K~ 226 (854)
-..|+||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 467999999954
No 82
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=25.10 E-value=21 Score=31.71 Aligned_cols=12 Identities=33% Similarity=1.157 Sum_probs=9.8
Q ss_pred CCeeecCCCCCC
Q psy14745 215 RGSWRCPVCNKP 226 (854)
Q Consensus 215 k~tWkCPIC~K~ 226 (854)
...|+||+|+..
T Consensus 58 PddW~CPvCga~ 69 (81)
T 2kn9_A 58 PDDWSCPDCGAA 69 (81)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 457999999964
No 83
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.86 E-value=16 Score=31.25 Aligned_cols=48 Identities=23% Similarity=0.517 Sum_probs=34.1
Q ss_pred ecCCcccccccccCCC--CCcCcccccc-HHHHHHHhcC---CCeeecCC--CCCC
Q psy14745 179 LKCPITFKKITLPARG--HDCKHIQCFD-LESYLQLNCE---RGSWRCPV--CNKP 226 (854)
Q Consensus 179 LkCPLS~~RIkiPVRG--~~CkHLQCFD-LeSFLq~n~q---k~tWkCPI--C~K~ 226 (854)
+.|+|=...+..|+-. ..|.|.=|.+ +..|++..-+ ....+||. |.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5789888887777544 3699987753 5667765422 24689999 9988
No 84
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=24.63 E-value=53 Score=26.77 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=24.4
Q ss_pred ccccCCCCC---cCccccccHHHHHHHhcCCCeeecCCCCCCCCC
Q psy14745 188 ITLPARGHD---CKHIQCFDLESYLQLNCERGSWRCPVCNKPAQL 229 (854)
Q Consensus 188 IkiPVRG~~---CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~ 229 (854)
+..|++-+. ..|..| |+.||... ..+.||+|+..+.+
T Consensus 20 l~~PC~C~gs~~~~H~~C--l~~W~~~~---~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 20 RFRACGCTGELENVHRSC--LSTWLTIS---RNTACQICGVVYNT 59 (60)
T ss_dssp CCCSCCCSSGGGSCCHHH--HHHHHHHH---TCSBCTTTCCBCCC
T ss_pred eecCcCCCCchhhhHHHH--HHHHHHhC---CCCccCCCCCeeec
Confidence 347865333 556666 56777653 35899999987654
No 85
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=24.60 E-value=22 Score=28.98 Aligned_cols=12 Identities=42% Similarity=1.439 Sum_probs=9.8
Q ss_pred CCeeecCCCCCC
Q psy14745 215 RGSWRCPVCNKP 226 (854)
Q Consensus 215 k~tWkCPIC~K~ 226 (854)
...|+||+|+..
T Consensus 33 P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 33 PDDWVCPLCGAP 44 (52)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 467999999954
No 86
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=24.46 E-value=21 Score=30.75 Aligned_cols=12 Identities=42% Similarity=1.185 Sum_probs=9.8
Q ss_pred CCeeecCCCCCC
Q psy14745 215 RGSWRCPVCNKP 226 (854)
Q Consensus 215 k~tWkCPIC~K~ 226 (854)
...|+||+|+..
T Consensus 38 Pddw~CP~Cga~ 49 (70)
T 1dx8_A 38 SDSFMCPACRSP 49 (70)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 467999999964
No 87
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A
Probab=23.59 E-value=41 Score=40.97 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=28.6
Q ss_pred ceEEEEcCeeccccCCCCCCCCCC--ccccccccCcccEEEEEEe
Q psy14745 70 SVQVSVNATPLMIDRGENKTSHRP--LYLKEVCQPGRNTIQITVS 112 (854)
Q Consensus 70 ~I~IsVNgkpV~I~RgenKrsDrP--VdIT~lcrpGrNtIqIT~s 112 (854)
..+|.|||+.|-. +.+...| ++||.+++.|.|+|.|.+.
T Consensus 155 ~a~V~vNG~~vG~----~~gg~~p~~~DIT~~L~~G~N~L~V~V~ 195 (1010)
T 3bga_A 155 FYYVWVNGKLLGY----NQGSKTAAEWDITDVLSEGENVVALEVY 195 (1010)
T ss_dssp EEEEEETTEEEEE----EECSSSCEEEECGGGCCSSEEEEEEEEE
T ss_pred eeEEEECCEEEee----EeCCCCcceeehhhhccCCCcEEEEEEE
Confidence 4778888886532 2233344 6899999999999999884
No 88
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.40 E-value=36 Score=29.22 Aligned_cols=39 Identities=15% Similarity=0.459 Sum_probs=25.8
Q ss_pred cccccCCCC---CcCccccccHHHHHHHhcCCCeeecCCCCCCCCCC
Q psy14745 187 KITLPARGH---DCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLE 230 (854)
Q Consensus 187 RIkiPVRG~---~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~e 230 (854)
.+..|++-+ .--|..|. +.||... ....||+|+..+.++
T Consensus 30 ~l~~pC~C~Gs~h~fH~~Cl--~~Wl~~~---~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 30 PLITPCHCTGSLHFVHQACL--QQWIKSS---DTRCCELCKYEFIME 71 (80)
T ss_dssp CEECSSSCCSSSCCEETTHH--HHHHHHH---CCSBCSSSCCBCCCC
T ss_pred eeEeccccCCcCCeeCHHHH--HHHHhhC---CCCCCCCCCCeeecC
Confidence 345677643 44566664 5788764 357999999887654
No 89
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}
Probab=23.12 E-value=44 Score=38.24 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=29.6
Q ss_pred ceEEEEcCeeccccCCCCCCCCCC--ccccccccCc-ccEEEEEEec
Q psy14745 70 SVQVSVNATPLMIDRGENKTSHRP--LYLKEVCQPG-RNTIQITVSA 113 (854)
Q Consensus 70 ~I~IsVNgkpV~I~RgenKrsDrP--VdIT~lcrpG-rNtIqIT~ss 113 (854)
...|.|||+.|-.. .+.-.| ++||++++.| .|+|.|.+..
T Consensus 78 ~a~V~vNG~~vg~~----~~~~~~~~~dit~~l~~G~~N~l~V~v~~ 120 (667)
T 3cmg_A 78 IADVFINRKHIGEH----RGGYGAFIFEITDLVKYGEKNSVLVRANN 120 (667)
T ss_dssp EEEEEETTEEEEEE----ECSSSCEEEECTTTSCTTSEEEEEEEEEC
T ss_pred eeEEEECCEEEeee----cCCcccEEEECCHHHCCCCCcEEEEEEec
Confidence 57899999976332 222233 6899999998 8999999864
No 90
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=21.76 E-value=15 Score=43.24 Aligned_cols=31 Identities=19% Similarity=0.660 Sum_probs=19.6
Q ss_pred ccCCCCCcCccc-cccHHHHHHHhcCCCeeecCCCCCC
Q psy14745 190 LPARGHDCKHIQ-CFDLESYLQLNCERGSWRCPVCNKP 226 (854)
Q Consensus 190 iPVRG~~CkHLQ-CFDLeSFLq~n~qk~tWkCPIC~K~ 226 (854)
.|+|.+.|+-.- +| .+. ...++|+|++|+..
T Consensus 84 ~p~RC~rCrayiNPf-----~~f-~~~~~w~Cn~C~~~ 115 (751)
T 3eh1_A 84 TIVRCRSCRTYINPF-----VSF-IDQRRWKCNLCYRV 115 (751)
T ss_dssp CCCBCTTTCCBCCTT-----CEE-SSSSEEECTTTCCE
T ss_pred CCCcccCccCEeCCc-----eEE-ecCCEEEcccccCC
Confidence 478888887532 22 122 12479999999854
No 91
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.33 E-value=28 Score=31.32 Aligned_cols=12 Identities=33% Similarity=1.096 Sum_probs=9.8
Q ss_pred CCeeecCCCCCC
Q psy14745 215 RGSWRCPVCNKP 226 (854)
Q Consensus 215 k~tWkCPIC~K~ 226 (854)
...|+||+|+..
T Consensus 66 PddW~CPvCga~ 77 (87)
T 1s24_A 66 PDDWCCPDCGAT 77 (87)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCCCCCCCCC
Confidence 467999999964
No 92
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius}
Probab=21.21 E-value=1.6e+02 Score=34.23 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=28.5
Q ss_pred eEEEEcCeecccc---CCCCC-CCCC---Ccc--c-cccccCcccEEEEEEecc
Q psy14745 71 VQVSVNATPLMID---RGENK-TSHR---PLY--L-KEVCQPGRNTIQITVSAC 114 (854)
Q Consensus 71 I~IsVNgkpV~I~---RgenK-rsDr---PVd--I-T~lcrpGrNtIqIT~ss~ 114 (854)
..|.|||+.|.++ |+... ++.+ .++ | ..+|+.+.|+|+|++...
T Consensus 521 p~V~vNG~~v~vP~~w~g~dq~~r~~fFg~ieipVp~~lL~~~~NtI~VtFPD~ 574 (591)
T 4aw7_A 521 PVVKINGTAVSVPDNWKGYGQSNRNIFFGMIEVPFDIQLLKNGDNNVDITFSDG 574 (591)
T ss_dssp CEEEETTEEECCCSCCSSCCCTTSSEEEEEEEEEECGGGCCSEEEEEEEECSSC
T ss_pred CEEEECCEEeccCcccccccccChhhceEEEEecCCHHHHhcCCCeEEEEecCC
Confidence 4699999998775 44222 1111 122 2 346777999999999865
Done!