RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14745
(854 letters)
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 184 bits (468), Expect = 7e-52
Identities = 79/322 (24%), Positives = 124/322 (38%), Gaps = 38/322 (11%)
Query: 9 FPVRDGIILP---PFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLK----------- 54
+ V D +I P +F L + + D +
Sbjct: 26 YDVLDVLIKPTSLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRL 85
Query: 55 CFHHEDRQMNTNWPASVQVSVNAT--------PLMIDRGENKTSHRPLYLKEVCQPGR-- 104
C N+P S+ + VN P + E K RPL + + +
Sbjct: 86 CLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAV 145
Query: 105 -NTIQIT-VSACCCSHLFVLQLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRNFNNSNSS 162
N I I+ S ++ + LV + + +LQ L K + DH A IK
Sbjct: 146 PNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSRALIKEKLTAD--- 202
Query: 163 SMSSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPV 222
I T+L+VSL CP+ ++T+P R C H+QCFD YLQ+N ++ +W CPV
Sbjct: 203 ---PDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPV 259
Query: 223 CNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANWRVPRGMHVVKNEEDSESCANS 282
C+K A E L +D ILN S+V+E+ +W R K E S
Sbjct: 260 CDKKAAYESLILDGLFMEILNDC--SDVDEIKFQEDGSWCPMRP----KKEAMKVSSQPC 313
Query: 283 KRGMCAGKAMSPGSMTLPTMSN 304
+ + P S+T+ + ++
Sbjct: 314 TKIESSSVLSKPCSVTVASEAS 335
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 184 bits (468), Expect = 1e-51
Identities = 51/309 (16%), Positives = 125/309 (40%), Gaps = 26/309 (8%)
Query: 9 FPVRDGI--ILPPFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLKCFHHEDRQMNTN 66
+ ++ I ++ + + + F+L + L + + +L F + +
Sbjct: 74 YKIQRLIPELVMNVEVTGGRGMCSAKFKLSKADYNLLS-NPNSKHRLYLFSGMINPLGSR 132
Query: 67 ------WPASVQVSVNATPLMIDRGENKT---SHRPLYLKEV--CQPGRNTIQITVSACC 115
+P ++ N + + K+ + +P L +N +++ +
Sbjct: 133 GNEPIQFPFPNELRCNNVQIKDNIRGFKSKPGTAKPADLTPHLKPYTQQNNVELIYAFTT 192
Query: 116 CSHLFVLQLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRNFNNSNSSSMSSSDSIEQTAL 175
+ +V + + +L+ +L+ + + +K+ + T+
Sbjct: 193 KEYKLFGYIVEMITPEQLLEKVLQHPKIIKQATLLYLKKTL------REDEEMGLTTTST 246
Query: 176 KVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVD 235
+SL+CPI++ ++ P++ +CKH+QCFD +L + +W+CPVC LE L +
Sbjct: 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAIS 306
Query: 236 QYMWGILNTLNNSEVEEVTIDATANWRVPRGMHVVKNEEDSESCANSKRGMCAGKAMSPG 295
+++ IL VE+V + + W ++++++DS+S +N + G
Sbjct: 307 EFVDDILQNC-QKNVEQVELTSDGKWTA-----ILEDDDDSDSDSNDGSRSPEKGTLGEG 360
Query: 296 SMTLPTMSN 304
+ L +
Sbjct: 361 AAALEHHHH 369
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 82.3 bits (202), Expect = 2e-17
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 160 NSSSMSSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWR 219
+ + + D ++ K+ L CPIT K P C H FD + +
Sbjct: 163 DLQNPADEDDLQIEGGKIELTCPITCKPYEAPLISRKCNH--VFDRDGIQNYLQGYTTRD 220
Query: 220 CPV--CNKPAQLEGLEVDQYM 238
CP C++ + D M
Sbjct: 221 CPQAACSQVVSMRDFVRDPIM 241
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 50.5 bits (120), Expect = 3e-06
Identities = 48/291 (16%), Positives = 79/291 (27%), Gaps = 50/291 (17%)
Query: 285 GMCAGKAMSPGSMTLPTMSNWEMGQSMSPYIPPDMNSKSPFMHIESSAILSFPNGYSMPG 344
++P S ++ + + P + + M Y
Sbjct: 1463 EDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMA-------GGFTAYGGAD 1515
Query: 345 RPSFQGHHQYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPS-FPSSSGPNSNANGGSN 403
+ P S P P +P+S S S S P S + ++
Sbjct: 1516 YGEATSPFGAYGEAPTS-PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTS 1574
Query: 404 HQYFGAGNQFPGGVPPNSNQYQEIKECDQKAQISMTYQMHFHNFITMYFHSYQLHNGFLC 463
Y + P S S T
Sbjct: 1575 PSYSPTSPSYSPTSPSYSPTS---------PSYSPTSP---------------------- 1603
Query: 464 FTGFQQNEMRNNLTYQQHSSPLPG-NPTPPLTPASSTSVPPFVSPNSTSSPFISPPHSVS 522
+ + T +S P +PT P +S S P S +SP SP S +
Sbjct: 1604 --SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPA 1660
Query: 523 GRDVKPTFSDIKPTFSDIKPAINPHPQSIASGSMMNNNSGP------PSYS 567
P++S P++S P+ +P S + S + + P P YS
Sbjct: 1661 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYS 1711
Score = 39.3 bits (91), Expect = 0.007
Identities = 46/314 (14%), Positives = 81/314 (25%), Gaps = 60/314 (19%)
Query: 463 CFTGFQQNEMRNNLTYQQHSSPLPGNPTPPLTPASSTSVPPFVSPNSTSSPFISPPHSVS 522
F E +Q + + +TP S+ S + SP
Sbjct: 1440 AFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSG 1499
Query: 523 GRDVKPT-FSDIKPTFSDIKPAINPHPQSIASGSMMNNNSGPPSYS-MSMNRSSGGNGGG 580
D F+ +D A +P + + P +S S S
Sbjct: 1500 SNDAMAGGFTAYGG--ADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYS 1557
Query: 581 FNDFPSGGNSGDFPGDNSLESLNAMEKSLSEQMPHTPHTPHTPHTPHTPGGNGPPSVPPS 640
S + + S + S + ++P +P P+ P
Sbjct: 1558 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-----YSPTSPSY 1612
Query: 641 SSTQQQDTQTSSSNNVSTDDIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYL 700
S T + TS S + P+ ++ P
Sbjct: 1613 SPTSPSYSPTSPSYS------PTSPSYSP------------------------------- 1635
Query: 701 DPPDLATPPSSGSSNGNNPGGPTTNDDILALEQMPHTPHTPHTPHTPHTPGGNGPPSVPP 760
+P S +S +P P+ P +P T + + P+ P
Sbjct: 1636 -----TSPSYSPTSPSYSPTSPS---------YSPTSPAYSPTSPSYSPTSPSYSPTSPS 1681
Query: 761 SSSTQQQDTQTSSS 774
S T + TS +
Sbjct: 1682 YSPTSPSYSPTSPN 1695
Score = 35.5 bits (81), Expect = 0.085
Identities = 48/276 (17%), Positives = 74/276 (26%), Gaps = 52/276 (18%)
Query: 282 SKRGMCAGKAMSPGSMTLPTMSNWEMGQSMSPYIPPDMNSKSPFMHIESSAI--LSFPNG 339
S G T +++ G++ SP+ SP + S S
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADY--GEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYS 1550
Query: 340 YSMPGRPSFQGHH-----QYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPSFPSSSGP 394
+ P + Y P P + P S S S T S + P
Sbjct: 1551 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1610
Query: 395 NSNANGGSNHQYFGAGNQFPGGVPPNSNQYQEIKECDQKAQISMTYQMHFHNFITMYFHS 454
+ + S + + P S Y S +Y
Sbjct: 1611 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---------PTSPSYS------------- 1648
Query: 455 YQLHNGFLCFTGFQQNEMRNNLTYQQHSSPLPGNPTPPLTPASSTSVPPFVSPNSTSSPF 514
+ + Y S +PT P +S P SP S S
Sbjct: 1649 -----------PTSPSYSPTSPAYSPTSPSY--SPTSPSYSPTS----PSYSPTSPSYSP 1691
Query: 515 ISPPHSVSGRDVKPTFSDIKPTFSDIKPAINPHPQS 550
SP +S + P++S P +S PA +P
Sbjct: 1692 TSPNYSPTS----PSYSPTSPGYSPGSPAYSPKQDE 1723
Score = 35.1 bits (80), Expect = 0.12
Identities = 29/139 (20%), Positives = 44/139 (31%), Gaps = 8/139 (5%)
Query: 291 AMSPGSMTLPTMSNWEMGQSMSPYIP--PDMNSKSPFMHIESSAILSFPNGYSMPGRPSF 348
+ SP S + S + Y P P + SP S + YS P PS+
Sbjct: 1597 SYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSY 1654
Query: 349 Q-GHHQYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPSFPSSSGPNSNANGGSNHQYF 407
Y P P + P S S S +P+ P+ S P S + ++ Y
Sbjct: 1655 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPNYS-PTSPSYSPTSPGYS 1711
Query: 408 GAGNQFPGGVPPNSNQYQE 426
+ + E
Sbjct: 1712 PGSPAYSPKQDEQKHNENE 1730
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 43.0 bits (101), Expect = 2e-05
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 173 TALKVSLKCPITFKKITLPARGHDCKHIQCFD---LESYLQLNCER-GSWRCPV---CNK 225
++ CPIT +++ P + C H ++ + ++ +R CP +
Sbjct: 2 SSGSSGFTCPITKEEMKKPVKNKVCGHT--YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59
Query: 226 PAQLEGLEVDQYM 238
+ L D+ +
Sbjct: 60 DIRKSDLIQDEAL 72
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 45.8 bits (108), Expect = 7e-05
Identities = 56/313 (17%), Positives = 99/313 (31%), Gaps = 39/313 (12%)
Query: 269 VVKNEEDSESCANSKRGMCAGKAMSPGSMTLPTMSNWEMGQSMSPYIP--PDMNSKSPFM 326
+ + + AG M + + +E + PD + SP +
Sbjct: 1450 YLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLV 1509
Query: 327 HIESSAILSFPNGYSMPGRPSFQGHHQYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTP 386
S F + + ++G P S +G S S S ++P
Sbjct: 1510 QGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSP 1569
Query: 387 SFPSSS---GPNSNANGGSNHQYFGAGNQFPGGVPPNSNQYQEIKECDQKAQISMTYQMH 443
++ SS P S + ++ Y + P S Y S +Y
Sbjct: 1570 AYMPSSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYS---------ATSPSYSPT 1616
Query: 444 FHNFITMYFHSYQLHNGFLCFTGFQQNEMRNNLTYQQHSSPL-PGNPTPPLTPASSTSVP 502
S ++ + + +Y S P +P+ T S +
Sbjct: 1617 ----------SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1666
Query: 503 PFVSPNSTSSPFISPPHSVSGRDVKPTFSDIKPTFSDIKPAINPHPQSIASGSMMNNNSG 562
P SP S S SP +S + P++S P++S P+ +P S + S + +
Sbjct: 1667 PSYSPTSPSYSPTSPSYSPTS----PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1722
Query: 563 P------PSYSMS 569
P PSYS +
Sbjct: 1723 PSYSPTSPSYSPT 1735
Score = 39.3 bits (91), Expect = 0.006
Identities = 52/239 (21%), Positives = 80/239 (33%), Gaps = 35/239 (14%)
Query: 460 GFLCFTGFQQNEMRNNLTYQQHSSPLPGNPTPPLTPASSTSVP---------------PF 504
GF + + ++SP +P S + P P
Sbjct: 1518 GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPS 1577
Query: 505 VSPNSTS----SPFISP------PHSVSGRDVKPTFSDIKPTFSDIKPAINPHPQSIASG 554
SP S S SP SP P S S P++S P++S P+ +P S +
Sbjct: 1578 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1637
Query: 555 SMMNNNSGPPSYS-MSMNRSSGGNGGGFNDFPSGGNSGDFPGDNSLESLNAMEKSLSEQM 613
S + + PSYS S + S S + + S + S
Sbjct: 1638 S-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----- 1691
Query: 614 PHTP-HTPHTPHTPHTPGGNGPPSVPPSSSTQQQDTQTSSSNN-VSTDDIPSDLNFDPA 670
P +P ++P +P T P S P S T + TS S + S P+ ++ P
Sbjct: 1692 PTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1749
Score = 34.7 bits (79), Expect = 0.16
Identities = 61/344 (17%), Positives = 105/344 (30%), Gaps = 55/344 (15%)
Query: 463 CFTGFQQNEMRNNLTYQQHSSPLPGNPTPPLTPASSTSVPPFVSPNSTSSPFISPPHSVS 522
F + +M N + L G+ P SP S SP +
Sbjct: 1446 AFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAA- 1504
Query: 523 GRDVKPTFSDIKPTFSDIKPAINPHPQSIASGSMMNNNSGPPSYSMSMNRSSGGNGGGFN 582
FS + S+ + + A+ S + S S G +
Sbjct: 1505 -------FSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPS 1557
Query: 583 DFPSGGNSGDFPGDNSLE-SLNAMEKSLSEQMP-HTPHTP-HTP----HTPHTPG----- 630
PS P S + S S P ++P +P ++P ++ +P
Sbjct: 1558 YSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTS 1617
Query: 631 GNGPPSVPPSSSTQQQDTQTSSSNN-VSTDDIPSDLNFDPAAVIDGEGQGQENLNLLPDN 689
+ P+ P S T + TS S + S P+ ++ P +
Sbjct: 1618 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----------------- 1660
Query: 690 VVDPMELLSYLDPPDLATPPSSGSSNGNNPGGPTTNDDILALEQMPHTP-HTPHTPHTPH 748
+P S +S +P P+ + + P +P ++P +P
Sbjct: 1661 ------------SYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSP 1706
Query: 749 TPGGNGPPSVPPSSSTQQQDTQTSSSNN-VSTDDIPSDLNFDPA 791
T P S P S T + TS S + S P+ ++ P
Sbjct: 1707 TSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1749
Score = 31.6 bits (71), Expect = 1.5
Identities = 31/133 (23%), Positives = 42/133 (31%), Gaps = 18/133 (13%)
Query: 291 AMSPG-SMTLPTMSNWEMGQSMSP-----------YIPPDMNSKSPFMHIESSAILSFPN 338
A SP S T P+ S S + P + SP S +
Sbjct: 1608 ATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1667
Query: 339 GYSMPGRPSFQGHH-QYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQST-PSFPSSSG--- 393
YS P PS+ Y P P + P S S S T PS+ +S
Sbjct: 1668 SYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1726
Query: 394 PNSNANGGSNHQY 406
P S + ++ Y
Sbjct: 1727 PTSPSYSPTSPSY 1739
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 44.0 bits (103), Expect = 2e-04
Identities = 25/179 (13%), Positives = 39/179 (21%), Gaps = 15/179 (8%)
Query: 347 SFQGHHQYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPSFPSSSGPNSNANGGSNHQY 406
S YP Q G N P + P+ S
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQP------AQFMPPQDPAAAGMSYGQMGMPPQGAVPS 55
Query: 407 FGAGNQFPGGVPPNSNQYQEIKECDQKAQISMTYQMHFHNFITMYFHSYQLHNGFLCFTG 466
G Q Q +H + + +
Sbjct: 56 MGQQQFLTPAQEQLHQQID------QATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL 109
Query: 467 FQQNEMRNNLTYQQHSSPLPGNPTPPLTPAS---STSVPPFVSPNSTSSPFISPPHSVS 522
QQ + Y Q S+ + N P T +PP ++ + P + P
Sbjct: 110 QQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168
Score = 39.4 bits (91), Expect = 0.005
Identities = 28/178 (15%), Positives = 42/178 (23%), Gaps = 5/178 (2%)
Query: 342 MPGRPSFQGHHQYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPSFPSSSGPNSNANG- 400
P G + P QQP P P +A S G + PS
Sbjct: 9 YPQAQLQYGQNATPLQQP--AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66
Query: 401 GSNHQYFGAGNQFPGGVPPNSNQYQEIKECDQKAQISMTYQMHFHNFITMYFHSYQLHNG 460
HQ + ++ + Q M +Y +
Sbjct: 67 EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126
Query: 461 FLC--FTGFQQNEMRNNLTYQQHSSPLPGNPTPPLTPASSTSVPPFVSPNSTSSPFIS 516
+ Q + LT P PPL + P N++ S
Sbjct: 127 AMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRS 184
Score = 31.7 bits (71), Expect = 1.1
Identities = 16/132 (12%), Positives = 29/132 (21%), Gaps = 7/132 (5%)
Query: 292 MSPGSMTLPTMSNWEMGQSMSPY-IPPDMNSKSPFMHIESSAILSFPNGYSMPGRPSFQG 350
+ + +P G S +PP S + + S
Sbjct: 23 LQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMND 82
Query: 351 --HHQYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPSFPSSSGPNSNANGGSNHQYFG 408
H P P + P + Q + P+ P++
Sbjct: 83 MHLHNVPLVDPNAYMQPQVPVQMGTPLQQQ----QQPMAAPAYGQPSAAMGQNMRPMNQL 138
Query: 409 AGNQFPGGVPPN 420
+PP
Sbjct: 139 YPIDLLTELPPP 150
Score = 30.9 bits (69), Expect = 1.9
Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 7/123 (5%)
Query: 702 PPDLATPPSSGSSNGNNPGGPTTNDDILALEQMPHTPHTPHTPHTPHTPGGNGPPSVPPS 761
P L Q + + + P V P+
Sbjct: 35 PAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94
Query: 762 SSTQQQDTQTSSSNNVSTDDIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYL 821
+ Q Q + AA G+ N+ P N + P++LL+ L
Sbjct: 95 AYMQPQVPVQMGTP-------LQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTEL 147
Query: 822 DPP 824
PP
Sbjct: 148 PPP 150
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 40.4 bits (94), Expect = 8e-04
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 47/105 (44%)
Query: 164 MSSSDSIEQTA------LKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGS 217
M + +SI++ A L + L CP +CK +E + G
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCP-------------ECKVYPPKIVERF-----SEGD 42
Query: 218 WRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANWR 262
C +C GL V + + +D + WR
Sbjct: 43 VVCALC-------GL-V---------------LSDKLVDTRSEWR 64
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 37.3 bits (87), Expect = 0.001
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 158 NSNSSSMSSSDSIEQTALKVSLKCPI---TFKK-ITLPARGHDCKHIQCFDLESYLQLNC 213
+S SS M+S + L+ + CPI +K +T+ C H C +
Sbjct: 2 SSGSSGMASGQFVN--KLQEEVICPICLDILQKPVTID-----CGHNFC---LKCITQIG 51
Query: 214 E--RGSWRCPVCNKPAQLEGL 232
E G ++CP+C + +
Sbjct: 52 ETSCGFFKCPLCKTSVRKNAI 72
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 35.1 bits (81), Expect = 0.007
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 165 SSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVC 223
SS S E + L C I +T C + C + + + L E CP C
Sbjct: 2 SSGSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL---ESDEHTCPTC 58
Query: 224 NKPAQL 229
++
Sbjct: 59 HQNDVS 64
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 34.3 bits (79), Expect = 0.013
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 158 NSNSSSMSSSDSIEQTALKVSLKCPI---TFKK-ITLPARGHDCKHIQCFDLESYLQLNC 213
+S SS M+S + L+ + CPI +K +T+ C H C +
Sbjct: 2 SSGSSGMASGQFVN--KLQEEVICPICLDILQKPVTID-----CGHNFCL---KCITQIG 51
Query: 214 E--RGSWRCPVC 223
E G ++CP+C
Sbjct: 52 ETSCGFFKCPLC 63
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 35.3 bits (81), Expect = 0.018
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 174 ALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSW--RCPVCNKPAQLEG 231
L+ L+C + P C+HI C NC CPVC PA ++
Sbjct: 18 RLEKLLRCSRCTNILREPVCLGGCEHIFC--------SNCVSDCIGTGCPVCYTPAWIQD 69
Query: 232 L 232
L
Sbjct: 70 L 70
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 33.3 bits (76), Expect = 0.042
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 161 SSSMSSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWR 219
SS S E+ + +C I + P C+H C + + R
Sbjct: 2 SSGSSGGSEEEE----IPFRCFICRQAFQNPVVTK-CRHYFCESCALEHFRATP-----R 51
Query: 220 CPVCNKPAQ 228
C +C++P
Sbjct: 52 CYICDQPTG 60
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 33.3 bits (76), Expect = 0.057
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 165 SSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVC 223
S D ++ +C I +K+ C + CF + +L +CP C
Sbjct: 9 SHMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT----EQRAQCPHC 64
Query: 224 NKPAQLEGL 232
P QL L
Sbjct: 65 RAPLQLREL 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 35.1 bits (80), Expect = 0.057
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 123 QLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRNFNNSNSSSMSSSDSIEQTALKVSLKCP 182
QL + K + +L+K + + + + F + + I +T C
Sbjct: 127 QLKGKKMRKKEAEQVLQK--FVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICN 184
Query: 183 ITFKKITLPARGHDCK---HIQCFDLESYLQLNCERGSWRCPVCNKP 226
I + C H+ C + Y Q RCP CN
Sbjct: 185 ICHSLLIQGQSCETCGIRMHLPC--VAKYFQ---SNAEPRCPHCNDY 226
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 32.0 bits (73), Expect = 0.12
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 169 SIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPA 227
E + L C I +T C + C + + + L E CP C++
Sbjct: 4 GSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALL---ESDEHTCPTCHQND 60
Query: 228 QL 229
Sbjct: 61 VS 62
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 31.6 bits (72), Expect = 0.13
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 180 KCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKP 226
+CPI + + + C H C+ + +++ N CP+C P
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT-----CPLCKVP 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 30.8 bits (70), Expect = 0.15
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 18/56 (32%)
Query: 179 LKCPI---TFKK-ITLPARGHDCKHIQCFDLESYLQLNC-ERGSWRCPVCNKPAQL 229
L+C K LP C H C C E +CP+C P L
Sbjct: 7 LRCQQCQAEAKCPKLLP-----CLHTLCSG--------CLEASGMQCPICQAPWPL 49
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 32.8 bits (74), Expect = 0.17
Identities = 10/66 (15%), Positives = 16/66 (24%), Gaps = 12/66 (18%)
Query: 180 KCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMW 239
C F ++ + E W C +C+ P L L
Sbjct: 74 FCHNAF---------CKKCILRNLGRRELSTIMDENNQWYCYICH-PEPLLDLV--TACN 121
Query: 240 GILNTL 245
+ L
Sbjct: 122 SVYENL 127
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 30.4 bits (69), Expect = 0.24
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 16/67 (23%)
Query: 163 SMSSSDSIEQTALKVSLKCPI---TFKK-ITLPARGHDCKHIQCFDLESYLQLNCE--RG 216
S SS ++E L+V C + K+ + + C H C ++ + E
Sbjct: 2 SSGSSGALE--NLQVEASCSVCLEYLKEPVIIE-----CGHNFC---KACITRWWEDLER 51
Query: 217 SWRCPVC 223
+ CPVC
Sbjct: 52 DFPCPVC 58
>1i5p_A Pesticidial crystal protein CRY2AA; helical bundle, beta prism,
lectin-like beta sandwich, jelly roll, toxin; 2.20A
{Bacillus thuringiensis serovarkurstaki} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 633
Score = 33.8 bits (76), Expect = 0.29
Identities = 39/308 (12%), Positives = 81/308 (26%), Gaps = 27/308 (8%)
Query: 292 MSPGSMTLPTMSNWEMGQSMSPYIPPDMNSKSPFMHIESSAILSFPNGYSMPGRPSFQGH 351
S + + + G +S P ++ +G G
Sbjct: 297 YSLFQVNSNYILSGISGTRLSITFPNIGGLPGSTTTHSLNSARVNYSGGVSSGLIGATNL 356
Query: 352 HQYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPSFPSSSGPNSNANGGSNHQYFGAGN 411
+ + P PF + S ++ ++ + S + + G N
Sbjct: 357 NHNFNCSTVLPPLSTPFVRSWLDSGTDREGVATSTNWQTESFQTTLSLRCGAFSARGNSN 416
Query: 412 QFPGGVPPNSNQYQEIKECDQKAQISMTYQMHFHNFITMYFHSYQLHNGFLCFTGFQQNE 471
FP N I + + +N I G + N
Sbjct: 417 YFPDYFIRN------ISGVPLVIRNEDLTRPLHYNQIRNIESPSGTPGGARAYLVSVHN- 469
Query: 472 MRNNLTYQQHSSPLPGNPTPPLTPASSTSVPPFVSPNSTSSPFISPPHSVSGRDVKPTFS 531
R N Y + + + P + S N+ + FIS G ++
Sbjct: 470 -RKNNIYAANENGTMIHLAPEDYTGFTISPIHATQVNNQTRTFISEKFGNQGDSLR---- 524
Query: 532 DIKPTFSDIKPAINPHPQ---------SIASGSMMNNNSGPPSY-----SMSMNRSSGGN 577
+ + + + + + SI + ++ +G + + N N
Sbjct: 525 -FEQSNTTARYTLRGNGNSYNLYLRVSSIGNSTIRVTINGRVYTVSNVNTTTNNDGVNDN 583
Query: 578 GGGFNDFP 585
G F+D
Sbjct: 584 GARFSDIN 591
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 31.0 bits (69), Expect = 0.38
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 181 CPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQ 228
C I + R CKH+ C+D L+ ++G CP C+ P Q
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDC---AILHEKKGDKMCPGCSDPVQ 48
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 30.8 bits (70), Expect = 0.40
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 163 SMSSSDSIEQTALKVSLKCPI---TFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSW 218
S SS +++ L+ L+CPI +F + L + C H C LE L +
Sbjct: 2 SSGSSGNLDA--LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS--INGV 57
Query: 219 RCPVCNKPAQLEGLE 233
RCP C+K ++ L
Sbjct: 58 RCPFCSKITRITSLT 72
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 29.8 bits (67), Expect = 0.47
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 205 LESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLN----NSEVEE 252
+E+ + + R S++CPVC+ LE +Q + T ++EVEE
Sbjct: 2 IETDERDSTNRASFKCPVCSS--TFTDLEANQLFDPMTGTFRCTFCHTEVEE 51
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 76
Score = 29.9 bits (67), Expect = 0.51
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 195 HDCKHIQCFDLESYLQLNCERGSWRCPVCNKPA 227
C H+ C D G+WRC VC+ P+
Sbjct: 46 RGCNHLVCRDCRIQES----NGTWRCKVCSGPS 74
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 29.9 bits (68), Expect = 0.56
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 18/78 (23%)
Query: 162 SSMSSSDSIEQTALKVSLKCPI---TFKK-ITLPARGHDCKHI---QCFDLESYLQLNCE 214
SS SS + E+ + CPI + ++L C H C + + +
Sbjct: 2 SSGSSGNVQEE------VTCPICLELLTEPLSLD-----CGHSLCRACITVSNKEAVTSM 50
Query: 215 RGSWRCPVCNKPAQLEGL 232
G CPVC E L
Sbjct: 51 GGKSSCPVCGISYSFEHL 68
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 29.4 bits (66), Expect = 0.60
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 12/57 (21%)
Query: 179 LKCPITFKKITLPARGHD------CKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQ 228
+ CPI + + C H+ C L L+ CP C K
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-----CPTCRKKIN 55
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1;
2.40A {Mus musculus} PDB: 2e32_A
Length = 297
Score = 31.8 bits (71), Expect = 0.76
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 630 GGNGPPSV--PPSSSTQQQDTQTSSSNNVSTDDIPSDLNFDPAAVIDGEGQGQENLNLLP 687
G P SV P +S ++Q + + + + + + A ++ L LP
Sbjct: 3 GDGDPESVSHPEEASPEEQPEEAGAEASAEEEQLREAEEEEEAEAVE-------YLAELP 55
Query: 688 DNVVDPMELLSYLDPPDLAT 707
+ ++ + +L+ L +L
Sbjct: 56 EPLL--LRVLAELPATELVQ 73
Score = 31.8 bits (71), Expect = 0.76
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 751 GGNGPPSV--PPSSSTQQQDTQTSSSNNVSTDDIPSDLNFDPAAVIDGEGQGQENLNLLP 808
G P SV P +S ++Q + + + + + + A ++ L LP
Sbjct: 3 GDGDPESVSHPEEASPEEQPEEAGAEASAEEEQLREAEEEEEAEAVE-------YLAELP 55
Query: 809 DNVVDPMELLSYLDPPDLAT 828
+ ++ + +L+ L +L
Sbjct: 56 EPLL--LRVLAELPATELVQ 73
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 30.3 bits (68), Expect = 0.79
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 27/104 (25%)
Query: 161 SSSMSSSDSIEQTALKVSLKCPI---TFKK-ITLPARGHDCKHIQCFD-LESYLQLNCER 215
+ + S+ + +C I + +TLP C H C +S + E+
Sbjct: 4 ALPKDAIPSLSE------CQCGICMEILVEPVTLP-----CNHTLCKPCFQSTV----EK 48
Query: 216 GSWRCPVCNKP-------AQLEGLEVDQYMWGILNTLNNSEVEE 252
S CP C + V+ +W I+ E +
Sbjct: 49 ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECKL 92
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 29.1 bits (65), Expect = 0.81
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 12/69 (17%)
Query: 165 SSSDSIEQTALKVSLKCPITFKKITLPARGHD------CKHIQCFD-LESYLQLNCERGS 217
SS S ++ CPI + + C H+ C L L+
Sbjct: 2 SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--- 58
Query: 218 WRCPVCNKP 226
CP C K
Sbjct: 59 --CPTCRKK 65
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 28.8 bits (65), Expect = 0.95
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 13/53 (24%)
Query: 181 CPI---TFKKITLPARGHDCKHI---QCFDLESYLQLNCERGSWRCPVCNKPA 227
CPI + A C H+ C++ L+ RCP+C+ P+
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYE--EMLKEGY-----RCPLCSGPS 53
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 30.3 bits (68), Expect = 1.1
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 139 RKRLLTADHCIAKIKRNFNNSNSSSMSSSDSIEQTALKVS--LKCPITFKKITLPARGHD 196
+ L+ D AK+ S +S + KV +C + + P
Sbjct: 11 QSSLIREDKSNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPIT-TV 69
Query: 197 CKHIQCFD-LESYLQLNCERGSWRCPVCNKP 226
C+H C D L+ + CP C
Sbjct: 70 CQHNVCKDCLDRSF----RAQVFSCPACRYD 96
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 31.2 bits (70), Expect = 1.3
Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 2/125 (1%)
Query: 676 EGQGQENLNLLPDNVVDPMELLSYLDPPDLATPPSSGSSNGNNPGGPTTNDDILALEQMP 735
G + N D P+ ++ D + P N+ + LE
Sbjct: 9 SGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLK-IMKALPSPVVNDNEQKMKLEAFL 67
Query: 736 HTPHTPHTPHTPHTPGGNGPPSVPPSSSTQQQDTQTSSSNNVS-TDDIPSDLNFDPAAVI 794
P P + + S+ QQ S + + +D + + +
Sbjct: 68 QRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV 127
Query: 795 DGEGQ 799
D G
Sbjct: 128 DEHGN 132
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 29.7 bits (67), Expect = 1.3
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 16/80 (20%)
Query: 159 SNSSSMSSSDSIEQTALKVSLKCPI---TFKK-ITLPARGHDCKHIQCFDLESYLQLNCE 214
S + I A++ L+CPI K+ ++ C HI C + +
Sbjct: 4 SALRVEEVQNVIN--AMQKILECPICLELIKEPVSTK-----CDHIFC---KFCMLKLLN 53
Query: 215 --RGSWRCPVCNKPAQLEGL 232
+G +CP+C L
Sbjct: 54 QKKGPSQCPLCKNDITKRSL 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 1.4
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 422 NQYQEIKECDQKAQISMTYQMHFHNFITMYFHSYQLHNG---------FLCFTGFQQNEM 472
+ Y K D I +F++ I + H + + FL F F + ++
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHI-GH-HLKNIEHPERMTLFRMVFLDF-RFLEQKI 507
Query: 473 RNNLTYQQHSSPL 485
R++ T S +
Sbjct: 508 RHDSTAWNASGSI 520
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 29.2 bits (66), Expect = 1.4
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 20/83 (24%)
Query: 159 SNSSSMSSSDSIEQTALKVSLKCPI---TFKK-ITLPARGHDCKHIQCFDLESYLQLNCE 214
S SS M+S +K + CPI + ++L C H C ++ L N +
Sbjct: 3 SGSSGMASGIL---VNVKEEVTCPICLELLTQPLSLD-----CGHSFC---QACLTANHK 51
Query: 215 -----RGSWRCPVCNKPAQLEGL 232
+G CPVC Q E +
Sbjct: 52 KSMLDKGESSCPVCRISYQPENI 74
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 28.9 bits (65), Expect = 1.4
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 20/83 (24%)
Query: 159 SNSSSMSSSDSIEQTALKVSLKCPI---TFKK-ITLPARGHDCKHIQCFDLESYLQLNCE 214
S SS M+SS +K + CPI K+ ++ C H C + + LN E
Sbjct: 3 SGSSGMASSVL---EMIKEEVTCPICLELLKEPVSAD-----CNHSFC---RACITLNYE 51
Query: 215 -----RGSWRCPVCNKPAQLEGL 232
G CPVC P L
Sbjct: 52 SNRNTDGKGNCPVCRVPYPFGNL 74
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 28.5 bits (63), Expect = 1.7
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 164 MSSSDSIEQTALKVSLKCPITFKKITLPARGH---DCKHIQCFDLESYLQLNCERGSWRC 220
MS S ++ ++ CP+ + + + C + C ++ + C
Sbjct: 1 MSRSPDAKEDPVE----CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENG---LC 53
Query: 221 PVCNKP 226
P C KP
Sbjct: 54 PACRKP 59
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 31.2 bits (70), Expect = 1.7
Identities = 9/51 (17%), Positives = 12/51 (23%)
Query: 612 QMPHTPHTPHTPHTPHTPGGNGPPSVPPSSSTQQQDTQTSSSNNVSTDDIP 662
H H + P S P S Q + + S I
Sbjct: 2 AHHHHHHVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
Score = 31.2 bits (70), Expect = 1.7
Identities = 9/51 (17%), Positives = 12/51 (23%)
Query: 733 QMPHTPHTPHTPHTPHTPGGNGPPSVPPSSSTQQQDTQTSSSNNVSTDDIP 783
H H + P S P S Q + + S I
Sbjct: 2 AHHHHHHVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIE 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 30.1 bits (67), Expect = 1.7
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 178 SLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQY 237
+CPI + + C H C + + +CPV N+ L D +
Sbjct: 18 KYECPICLMALREAVQT-PCGHRFCKAC---IIKSIRDAGHKCPVDNEILLENQLFPDNF 73
Query: 238 MWGILNTLN 246
+ +L
Sbjct: 74 AKREILSLM 82
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 28.3 bits (63), Expect = 1.7
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 178 SLKCPITFKKITLPARGHD------CKHIQCFDLESYLQLNCERGSWRCPVCNKPAQ 228
++ CPI + + C H+ C L+ + + + CP C K
Sbjct: 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ---CLRDSLKNAN-TCPTCRKKIN 62
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 29.8 bits (66), Expect = 1.9
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 18/57 (31%)
Query: 180 KCPITFKKITLPARGHDCKHIQCFDL----ESYLQLNCERGSWRCPVCNKPAQLEGL 232
C F +C + + E W C +C+ P L L
Sbjct: 80 FCHNAF-------------CKKCILRNLGRKELSTIMDENNQWYCYICH-PEPLLDL 122
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 31.0 bits (69), Expect = 2.0
Identities = 47/307 (15%), Positives = 84/307 (27%), Gaps = 28/307 (9%)
Query: 482 SSPLPGNPTPPLTPASSTSVPPFVSPNSTSSPFISPPHSVSGRDVKPTFSDIKPTFSDIK 541
+S G+ T SS S S+ +P S +G P +
Sbjct: 256 TSYGTGSETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSW 315
Query: 542 PAINPHPQSIAS---GSMMNNNSGP---------------PSYSMSMNRSSGGNGGGFND 583
+ + S + GS ++G S+S + + G
Sbjct: 316 NSGSSGTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGHWTSESSVSGSTGQWHSESGSFR 375
Query: 584 FPSGGNSGDFPGDNSLESLNAMEKSLSEQMPHTPHTPHTPHTPH---TPGGNGPPSVPPS 640
S G+ P + + + ++S HT + G + +
Sbjct: 376 PDSPGSGNARPNNPDWGTFEEVSGNVSPGTRREYHTEKLVTSKGDKELRTGKEKVTSGST 435
Query: 641 SSTQQQDTQTSSSNNVSTDDIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYL 700
++T++ ++T + + D V +G L
Sbjct: 436 TTTRRSCSKTVTKTVIGPDGHKEVTK---EVVTSEDGSDCPEAMDLGTLSGIGTLDGFRH 492
Query: 701 DPPDLATPPSSGSSNGNNPGGPTTNDDILALEQMPHTPHTPHTPHTP----HTPGGNGPP 756
PD A + S+ PG + E + +T H PG P
Sbjct: 493 RHPDEAAFFDTASTGKTFPGFFSPMLGEFVSETESRGSESGIFTNTKESSSHHPGIAEFP 552
Query: 757 SVPPSSS 763
S SSS
Sbjct: 553 SRGKSSS 559
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 29.9 bits (67), Expect = 2.1
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 159 SNSSSMSSSDSIEQTALKVSLKCPI---TFKK-ITLPARGHD-CKHIQCFDLESYLQLNC 213
+ + + +L L CPI K +T H C C +
Sbjct: 35 QEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCA--DC------IITAL 86
Query: 214 ERGSWRCPVCNKP-AQLEGLEVDQYMWGILNTLNNS----EVEEVTIDATANWRVPRGMH 268
G+ CP C K L D +++ + S E + + A N +
Sbjct: 87 RSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQAL 146
Query: 269 VVKNEEDSESCANSKR 284
EE + A ++
Sbjct: 147 SHSIEEGLKIQAMNRL 162
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 28.2 bits (63), Expect = 2.4
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 163 SMSSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCP 221
S SS ++ + L + C I + +C H C + + + RCP
Sbjct: 2 SSGSSGNLSE--LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN-----RCP 54
Query: 222 VCNKP 226
CN
Sbjct: 55 KCNIV 59
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 30.7 bits (69), Expect = 2.5
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 701 DPPDLATP--PSSGSSNGNNPGGPTTNDDILALEQMPHTP-----HTPHTPHTPHTPGGN 753
DP +P P ++ GGP T P P P P G N
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 754 GPPSVPPSSSTQQQDTQTSSSNN 776
+ ++ + + + +
Sbjct: 61 ATVAAGHATLREHLRDIKAENTD 83
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops,
DNA binding protein; 1.85A {Thermus aquaticus} PDB:
2ihe_A 2cwa_A 2ihf_A
Length = 264
Score = 30.1 bits (68), Expect = 2.6
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 630 GGNGPPSVPPSSSTQQQDTQTSSSNNVSTDDIP 662
S PP+ T D + +D+P
Sbjct: 231 PAQAGGSRPPTVQTGGVDIDEGLEDFPPEEDLP 263
Score = 30.1 bits (68), Expect = 2.6
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 751 GGNGPPSVPPSSSTQQQDTQTSSSNNVSTDDIP 783
S PP+ T D + +D+P
Sbjct: 231 PAQAGGSRPPTVQTGGVDIDEGLEDFPPEEDLP 263
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 30.5 bits (68), Expect = 2.6
Identities = 20/103 (19%), Positives = 28/103 (27%), Gaps = 13/103 (12%)
Query: 293 SPGSMTLPTMSNWEMGQSMSPYIPPDMNSKSPFMHIESSAILSFPNGYSMPGRPSFQGHH 352
SPG + P +S P PF I S P+ S+P P+
Sbjct: 48 SPGQLHSP----------ISTLSSPINGMGPPFSVISSP---MGPHSMSVPTTPTLGFST 94
Query: 353 QYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPSFPSSSGPN 395
P P + G + PS +S
Sbjct: 95 GSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTK 137
Score = 29.3 bits (65), Expect = 6.7
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 7/111 (6%)
Query: 311 MSPYIPPDMNSKSPFMHIESSAILSFPNGYSMPGRPSFQGHHQYPSQQPGSGPNGAPFGP 370
M+ + ++ + ++ L+ P G PS +PS PG G G P
Sbjct: 1 MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL-----HPSLGPGIGSPGQLHSP 55
Query: 371 NSAPSSRGSSVRQSTPSFPSSSGPNSNANGGSNHQYFGAGNQFPGGVPPNS 421
S SS + + S GP+S + + G P P +
Sbjct: 56 ISTLSSPINGMGPPFSVISSPMGPHSMSVPTT--PTLGFSTGSPQLSSPMN 104
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 30.6 bits (68), Expect = 2.7
Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 1/70 (1%)
Query: 710 SSGSSNGNNPGGPTTNDDILALEQ-MPHTPHTPHTPHTPHTPGGNGPPSVPPSSSTQQQD 768
S + N P G T+ P TP + + P +S
Sbjct: 10 SDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSP 69
Query: 769 TQTSSSNNVS 778
+ S
Sbjct: 70 GSSGGGGFFS 79
Score = 30.2 bits (67), Expect = 3.3
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 337 PNGYSMPGRPSFQGHHQYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPSFPSSSGPNS 396
PNGY + P P SA +S + + + P++ P S
Sbjct: 19 PNGYMTD-------LQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGS 71
Query: 397 NANGGS 402
+ GG
Sbjct: 72 SGGGGF 77
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA
complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Length = 171
Score = 29.5 bits (65), Expect = 2.8
Identities = 8/51 (15%), Positives = 14/51 (27%)
Query: 613 MPHTPHTPHTPHTPHTPGGNGPPSVPPSSSTQQQDTQTSSSNNVSTDDIPS 663
M H H P P + P ++P +++ D
Sbjct: 1 MKHHHHHPMVPSYDSFDSEDYPAALPNHKPKGTFKDYVRDRADLNKDKPVI 51
Score = 29.5 bits (65), Expect = 2.8
Identities = 8/51 (15%), Positives = 14/51 (27%)
Query: 734 MPHTPHTPHTPHTPHTPGGNGPPSVPPSSSTQQQDTQTSSSNNVSTDDIPS 784
M H H P P + P ++P +++ D
Sbjct: 1 MKHHHHHPMVPSYDSFDSEDYPAALPNHKPKGTFKDYVRDRADLNKDKPVI 51
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 27.4 bits (61), Expect = 2.9
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 165 SSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVC 223
SS S ++ KC + P + C H C + + L S +C C
Sbjct: 2 SSGSSGFVKTVEDKYKCEKCHLVLCSPKQTE-CGHRFCESCMAALL----SSSSPKCTAC 56
Query: 224 NKP 226
+
Sbjct: 57 QES 59
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 30.3 bits (68), Expect = 3.3
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 718 NPGGPTTNDDILALEQMPHTPHTPHT--PHTPHTPGGNG 754
N P D +A+E + T T T H P TPGG G
Sbjct: 74 NEATPVIGD--VAMETITETIITESTMIGHNPKTPGGAG 110
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 27.6 bits (61), Expect = 3.4
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 8/49 (16%)
Query: 181 CPITFKKITLPARGHDCK---HIQCFDLESYLQLNCERGSWRCPVCNKP 226
C I + C H+ C + Y Q RCP CN
Sbjct: 18 CNICHSLLIQGQSCETCGIRMHLPC--VAKYFQ---SNAEPRCPHCNDY 61
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 28.2 bits (63), Expect = 3.7
Identities = 15/80 (18%), Positives = 20/80 (25%), Gaps = 19/80 (23%)
Query: 164 MSSSDSIEQ-------TALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERG 216
M S + L+C I F+ + C H C C R
Sbjct: 1 MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSL--------CIRK 52
Query: 217 SW----RCPVCNKPAQLEGL 232
+CP C L
Sbjct: 53 FLSYKTQCPTCCVTVTEPDL 72
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 28.3 bits (63), Expect = 3.9
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 178 SLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGLEVD- 235
S+ C I + P CKH+ C + L + CP C P LE
Sbjct: 23 SISCQICEHILADPVE-TSCKHLFCRICILRCL----KVMGSYCPSCRYPCFPTDLESPV 77
Query: 236 QYMWGILNTL 245
+ ILN+L
Sbjct: 78 KSFLNILNSL 87
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 28.7 bits (63), Expect = 4.5
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 195 HDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQL 229
DCK C N W C +C + ++
Sbjct: 76 EDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREV 110
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 27.9 bits (62), Expect = 5.3
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 164 MSSSDSIEQTALKVSLKCPI---TFKK-ITLPARGHD-CKHIQCFDLESYLQLNCERGSW 218
M + I+ T L L C + F T+ H CK C + YL S
Sbjct: 1 MHRTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKT--C--IVRYL-----ETSK 51
Query: 219 RCPVCNKPAQ 228
CP+C+
Sbjct: 52 YCPICDVQVH 61
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 27.9 bits (62), Expect = 5.6
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 178 SLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLEGLEVDQ 236
+CPI + + C H C + ++ +CPV N+ L D
Sbjct: 18 KYECPICLMALREAVQT-PCGHRFCKACIIKSIR----DAGHKCPVDNEILLENQLFPDN 72
Query: 237 YMWGILNTL 245
+ + +L
Sbjct: 73 FAKREILSL 81
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 6.9
Identities = 3/9 (33%), Positives = 6/9 (66%)
Query: 367 PFGPNSAPS 375
+ +SAP+
Sbjct: 31 LYADDSAPA 39
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 28.8 bits (65), Expect = 9.0
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 486 PGNPTPPLTPASSTSVPPFVSPNSTSSPFISPPHSVSGRDVK 527
PG T P S+ VSP S + P G+D++
Sbjct: 511 PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDKWDGKDLE 552
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase,
phosphoserine, enzyme complex, enzyme-metal complex,
isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa}
SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A*
1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A*
3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Length = 463
Score = 28.7 bits (65), Expect = 9.2
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 581 FNDFPSGGNSGDFPGDNSLESLNAMEKSLSEQMPHTPHTPHTP 623
F + G + G + LE L+ ++ P TP
Sbjct: 332 FKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTP 374
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.395
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,816,486
Number of extensions: 752128
Number of successful extensions: 1857
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1715
Number of HSP's successfully gapped: 132
Length of query: 854
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 752
Effective length of database: 3,853,851
Effective search space: 2898095952
Effective search space used: 2898095952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.4 bits)