RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14745
(854 letters)
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 39.7 bits (92), Expect = 1e-04
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 166 SSDSIEQT-----ALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRC 220
S+ +E+ A++ L+CPI + I P C HI C LN ++G +C
Sbjct: 4 SALRVEEVQNVINAMQKILECPICLELIKEPVS-TKCDHIFCKF-CMLKLLNQKKGPSQC 61
Query: 221 PVCNKPAQLEGLEVDQYMWGILNTL 245
P+C L+ ++ L
Sbjct: 62 PLCKNDITKRSLQESTRFSQLVEEL 86
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 36.1 bits (83), Expect = 0.001
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 177 VSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKP 226
V+ +CPI + + + C H C+ + +++ N CP+C P
Sbjct: 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-----TCPLCKVP 49
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 36.7 bits (84), Expect = 0.001
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 165 SSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVC 223
S ++++ L+ L+C + P C+HI C + + + CPVC
Sbjct: 11 HSRAALDR--LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------TGCPVC 61
Query: 224 NKPAQLEGLEVDQYMWGIL-------NTLNNSEVEE 252
PA ++ L++++ + ++ N L+++E+ +
Sbjct: 62 YTPAWIQDLKINRQLDSMIQLCSKLRNLLHDNELSD 97
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 32.0 bits (72), Expect = 0.023
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 179 LKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGL 232
+ C I+ K P + I F+ Q + P+ N+P +E +
Sbjct: 1 MLCAISGKVPRRPVLSPKSRTI--FEKSLLEQYVKDT--GNDPITNEPLSIEEI 50
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 31.0 bits (70), Expect = 0.092
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 178 SLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQY 237
S+ C I + P CKH+ C + + CP C P LE
Sbjct: 23 SISCQICEHILADPVE-TSCKHLFCRIC---ILRCLKVMGSYCPSCRYPCFPTDLE--SP 76
Query: 238 MWGILNTLNN 247
+ LN LN+
Sbjct: 77 VKSFLNILNS 86
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 29.5 bits (66), Expect = 0.16
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 8/52 (15%)
Query: 179 LKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLE 230
L+C + P + C H C E +CP+C P L
Sbjct: 7 LRCQQCQAEAKCP-KLLPCLHTLCSG-------CLEASGMQCPICQAPWPLG 50
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 28.9 bits (64), Expect = 0.66
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 180 KCPITFKKITLPARGHDCKHIQCFD-LESYLQLNCERGSWRCPVCNKPAQLE 230
+ C H F + +L+ CP+ N+ + +
Sbjct: 40 ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-----CPLDNREWEFQ 86
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 27.4 bits (60), Expect = 1.3
Identities = 12/52 (23%), Positives = 14/52 (26%), Gaps = 7/52 (13%)
Query: 179 LKCPITFKKITLPARGH----DCKHIQCFDLESYLQLNCERGSWRCPVCNKP 226
CP C H C + L RG+ CP C P
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESC---VDLLFVRGAGNCPECGTP 52
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 28.5 bits (63), Expect = 1.6
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 181 CPITFKKITLPARGH---DCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQL 229
C + + DCK C N W C +C + ++
Sbjct: 54 CGEQLGMLG--SASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREV 103
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 27.3 bits (60), Expect = 1.7
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 181 CPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQ-LEGLEVDQY 237
C I + C H+ C L E CP C + E + VD +
Sbjct: 26 CKICAENDKDVKI-EPCGHLMCTSC---LTSWQESEGQGCPFCRCEIKGTEPIVVDPF 79
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 29.0 bits (64), Expect = 2.4
Identities = 12/53 (22%), Positives = 19/53 (35%)
Query: 453 HSYQLHNGFLCFTGFQQNEMRNNLTYQQHSSPLPGNPTPPLTPASSTSVPPFV 505
H L L G+ + + ++Q S PG+P TP + P
Sbjct: 69 HGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLG 121
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 27.4 bits (60), Expect = 2.7
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 683 LNLLPDNVVDPMELLSYLDPPDLA 706
++LLP + + +LS+L+P DL
Sbjct: 19 ISLLPKELA--LYVLSFLEPKDLL 40
Score = 27.4 bits (60), Expect = 2.7
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 804 LNLLPDNVVDPMELLSYLDPPDLA 827
++LLP + + +LS+L+P DL
Sbjct: 19 ISLLPKELA--LYVLSFLEPKDLL 40
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 25.3 bits (55), Expect = 5.8
Identities = 10/30 (33%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 199 HIQCFDLESYLQLNCERGSWRCPVCNKPAQ 228
HI C + G W CP C PA
Sbjct: 32 HIHCLN---PPLPEIPNGEWLCPRCTCPAL 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.129 0.395
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,192,376
Number of extensions: 150441
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 22
Length of query: 854
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 761
Effective length of database: 1,130,706
Effective search space: 860467266
Effective search space used: 860467266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.8 bits)