BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14752
(85 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 6 KKIGMDEEGLFRVTGGASKVKRLKTCLDAH-CIKFEDALEYDAHVLAGVLKLYLRELPEP 64
+K G+D +G++RV+G + +++L+ ++ + +D+ D HV+ G LK++ RELPEP
Sbjct: 47 EKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEP 106
Query: 65 LLTY 68
L Y
Sbjct: 107 LFPY 110
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLL 66
G++ EGL+RV+G + ++ +K D K + ++ D +++ G LKLY R+LP PL+
Sbjct: 39 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 98
Query: 67 TYEGEP 72
TY+ P
Sbjct: 99 TYDAYP 104
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLL 66
G++ EGL+RV+G + ++ +K D K + ++ D +++ G LKLY R+LP PL+
Sbjct: 300 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 359
Query: 67 TYEGEP 72
TY+ P
Sbjct: 360 TYDAYP 365
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 13 EGLFRVTGGASKVKRLKTCLDAHCIK--FEDALEYDAHVLAGVLKLYLRELPEPLLTYE 69
+G++R++G AS ++RL+ D+ + ++ D H + + KLY RELP PLLTY+
Sbjct: 55 DGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQ 113
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 10 MDEEGLFRVTGGASKVKRLKTCLDA--HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
+D+ GLFR +G S+++ L+ + C+ +E YD +A +LK Y R+LPEPL+T
Sbjct: 52 LDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYD---VADMLKQYFRDLPEPLMT 108
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKLYLRELPEPLL 66
G+ EGL+RV+G ++ +K D K + + D +++ G LKLY R+LP P++
Sbjct: 303 GLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVI 362
Query: 67 TYE 69
TY+
Sbjct: 363 TYD 365
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCL----DAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64
G++E+GL+R+ G S+V++L + L A + E E++ + LK YLR LP P
Sbjct: 52 GINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGP 111
Query: 65 LLTYE 69
L+ Y+
Sbjct: 112 LMMYQ 116
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDA-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
G+ EG++RV+G S+++ L+ D H + + ++ + +AG +K + ELP+PL+
Sbjct: 83 GLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEK-DFTVNTVAGAMKSFFSELPDPLVP 141
Query: 68 YE 69
Y
Sbjct: 142 YN 143
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDA-HVLAGVLKLYLRELPEPLL 66
+ EG+FR + V+ ++ + + F+ +Y+A H+ A +LK +LRELPEPLL
Sbjct: 41 ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFD---QYNALHLPAVILKTFLRELPEPLL 97
Query: 67 TYEGEP 72
T++ P
Sbjct: 98 TFDLYP 103
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDA-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
G+ EGL+RV+G + ++ D H I ++E + +AG LK + +LP+PL+
Sbjct: 52 GLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLV-SMEVTVNAVAGALKAFFADLPDPLIP 110
Query: 68 YEGEP 72
Y P
Sbjct: 111 YSLHP 115
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDA-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
G+ EGL+RV+G + ++ D H I ++E + +AG LK + +LP+PL+
Sbjct: 42 GLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLV-SMEVTVNAVAGALKAFFADLPDPLIP 100
Query: 68 YEGEP 72
Y P
Sbjct: 101 YSLHP 105
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
+ EG+FR + V+ ++ + + F+ E H+ A +LK +LRELPEPLLT
Sbjct: 42 ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNEL--HLPAVILKTFLRELPEPLLT 99
Query: 68 YEGEP 72
++ P
Sbjct: 100 FDLYP 104
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
+ EG+FR + V+ ++ + + F+ E H+ A +LK +LRELPEPLLT
Sbjct: 77 ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNEL--HLPAVILKTFLRELPEPLLT 134
Query: 68 YEGEP 72
++ P
Sbjct: 135 FDLYP 139
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
+ EG+FR + V+ ++ + + F+ E H+ A +LK +LRELPEPLLT
Sbjct: 38 ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNEL--HLPAVILKTFLRELPEPLLT 95
Query: 68 YEGEP 72
++ P
Sbjct: 96 FDLYP 100
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 13 EGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLL 66
EGLFR +G ++K LK +D A D +AG+LK + RELPEP+L
Sbjct: 101 EGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCD---IAGLLKQFFRELPEPIL 151
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 9 GMDEEGLFRVTGGASKVKRLK-TCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
G+ E GL+R++G VK LK L + ++ D H + +LK +LR L EPLLT
Sbjct: 32 GLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVD-DIHAICSLLKDFLRNLKEPLLT 90
Query: 68 Y 68
+
Sbjct: 91 F 91
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
+ EG+F + V+ ++ + + F+ E H+ A +LK +LRELPEPLLT
Sbjct: 69 ALTTEGIFARSANTQVVREVQQKYNMGLPVDFDQYNEL--HLPAVILKTFLRELPEPLLT 126
Query: 68 YEGEP 72
++ P
Sbjct: 127 FDLYP 131
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 7 KIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLL 66
K +E LF+ G +++++ CLD + + H +A L ++L LPEP++
Sbjct: 188 KYACHQEDLFQTPGMQEELQQIIDCLDT---SIPETIPGSNHSVAEALLIFLEALPEPVI 244
Query: 67 TYE 69
YE
Sbjct: 245 CYE 247
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 7 KIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLL 66
K +E LF+ G +++++ CLD + + H +A L ++L LPEP++
Sbjct: 212 KYACHQEDLFQTPGMQEELQQIIDCLDT---SIPETIPGSNHSVAEALLIFLEALPEPVI 268
Query: 67 TYE 69
YE
Sbjct: 269 CYE 271
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 6 KKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPL 65
+K G++ L+R T +S + L+ LD D D HVLA K YL +LP P+
Sbjct: 37 EKKGLECSTLYR-TQSSSNLAELRQLLDCDTPSV-DLEMIDVHVLADAFKRYLLDLPNPV 94
Query: 66 L 66
+
Sbjct: 95 I 95
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 42 ALEYDAHVLAGVLKLYLRELPEPLLT--YEGEPFHLLTCTE 80
AL++ +H GVLK YL E E ++ E E L+ E
Sbjct: 264 ALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE 304
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 42 ALEYDAHVLAGVLKLYLRELPEPLLT--YEGEPFHLLTCTE 80
AL++ +H GVLK YL E E ++ E E L+ E
Sbjct: 92 ALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHQLVVVDE 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,557,499
Number of Sequences: 62578
Number of extensions: 88736
Number of successful extensions: 171
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 24
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)