Query psy14752
Match_columns 85
No_of_seqs 145 out of 1009
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 19:44:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04408 RhoGAP_GMIP RhoGAP_GMI 99.9 9.7E-24 2.1E-28 135.9 8.3 76 4-80 26-101 (200)
2 cd04406 RhoGAP_myosin_IXA RhoG 99.9 1.3E-23 2.8E-28 134.1 8.0 74 5-79 26-99 (186)
3 cd04388 RhoGAP_p85 RhoGAP_p85: 99.9 1.2E-23 2.5E-28 135.6 7.7 76 4-81 25-100 (200)
4 cd04407 RhoGAP_myosin_IXB RhoG 99.9 1.6E-23 3.4E-28 133.7 8.2 75 4-79 25-99 (186)
5 cd04382 RhoGAP_MgcRacGAP RhoGA 99.9 2.1E-23 4.6E-28 133.8 8.2 76 4-80 27-102 (193)
6 cd04409 RhoGAP_PARG1 RhoGAP_PA 99.9 3E-23 6.6E-28 134.6 8.3 74 5-79 27-100 (211)
7 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 99.9 3.2E-23 6.9E-28 133.2 8.0 75 5-79 27-102 (196)
8 cd04383 RhoGAP_srGAP RhoGAP_sr 99.9 3.7E-23 8E-28 132.2 8.1 75 5-79 29-104 (188)
9 cd04372 RhoGAP_chimaerin RhoGA 99.9 3.4E-23 7.3E-28 132.8 7.9 75 5-79 27-103 (194)
10 cd04378 RhoGAP_GMIP_PARG1 RhoG 99.9 3.7E-23 8.1E-28 133.4 8.1 76 4-80 26-101 (203)
11 cd04381 RhoGap_RalBP1 RhoGap_R 99.9 3E-23 6.5E-28 131.9 7.3 74 5-80 31-104 (182)
12 cd04392 RhoGAP_ARHGAP19 RhoGAP 99.9 4.7E-23 1E-27 133.5 8.2 72 7-79 21-93 (208)
13 cd04403 RhoGAP_ARHGAP27_15_12_ 99.9 3.6E-23 7.7E-28 132.0 7.6 76 5-80 27-103 (187)
14 cd04379 RhoGAP_SYD1 RhoGAP_SYD 99.9 4E-23 8.6E-28 133.8 7.8 75 5-79 29-105 (207)
15 cd04397 RhoGAP_fLRG1 RhoGAP_fL 99.9 4.8E-23 1E-27 133.7 7.8 74 5-78 38-111 (213)
16 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 99.9 6.1E-23 1.3E-27 132.8 8.0 74 5-79 20-93 (206)
17 cd04390 RhoGAP_ARHGAP22_24_25 99.9 7.9E-23 1.7E-27 131.4 8.2 74 5-79 33-106 (199)
18 cd04389 RhoGAP_KIAA1688 RhoGAP 99.9 6.8E-23 1.5E-27 130.9 6.8 72 6-79 34-105 (187)
19 cd04375 RhoGAP_DLC1 RhoGAP_DLC 99.9 1.7E-22 3.7E-27 131.8 7.7 74 5-79 31-104 (220)
20 cd04385 RhoGAP_ARAP RhoGAP_ARA 99.9 2.6E-22 5.6E-27 127.8 7.7 75 5-79 26-101 (184)
21 cd04373 RhoGAP_p190 RhoGAP_p19 99.9 2.5E-22 5.5E-27 128.0 7.6 74 5-79 26-100 (185)
22 cd04384 RhoGAP_CdGAP RhoGAP_Cd 99.9 3.6E-22 7.9E-27 128.2 8.0 75 5-80 29-105 (195)
23 cd04396 RhoGAP_fSAC7_BAG7 RhoG 99.9 4.4E-22 9.6E-27 130.2 8.2 75 5-79 43-119 (225)
24 cd04374 RhoGAP_Graf RhoGAP_Gra 99.9 5.3E-22 1.1E-26 128.2 7.5 76 4-80 38-119 (203)
25 cd04391 RhoGAP_ARHGAP18 RhoGAP 99.9 6.4E-22 1.4E-26 128.7 7.8 73 5-77 33-106 (216)
26 cd04377 RhoGAP_myosin_IX RhoGA 99.9 1.4E-21 3E-26 124.6 7.9 74 5-79 26-99 (186)
27 cd04393 RhoGAP_FAM13A1a RhoGAP 99.9 2.2E-21 4.8E-26 123.9 8.3 74 5-80 31-105 (189)
28 cd04386 RhoGAP_nadrin RhoGAP_n 99.9 1.9E-21 4.1E-26 125.4 7.7 75 5-79 31-106 (203)
29 cd04394 RhoGAP-ARHGAP11A RhoGA 99.9 2E-21 4.4E-26 125.3 7.7 68 8-78 33-100 (202)
30 cd04402 RhoGAP_ARHGAP20 RhoGAP 99.9 1.7E-21 3.7E-26 124.7 7.0 72 5-79 26-98 (192)
31 cd04395 RhoGAP_ARHGAP21 RhoGAP 99.9 3.3E-21 7.1E-26 123.7 7.9 74 5-78 29-104 (196)
32 cd04398 RhoGAP_fRGD1 RhoGAP_fR 99.8 4E-21 8.7E-26 122.8 7.6 75 5-79 27-105 (192)
33 cd04400 RhoGAP_fBEM3 RhoGAP_fB 99.8 1.1E-20 2.3E-25 120.8 8.0 75 5-79 33-110 (190)
34 cd04404 RhoGAP-p50rhoGAP RhoGA 99.8 5.5E-20 1.2E-24 117.8 8.0 72 5-78 34-106 (195)
35 smart00324 RhoGAP GTPase-activ 99.8 1.3E-19 2.7E-24 113.7 8.2 75 5-79 14-88 (174)
36 cd04380 RhoGAP_OCRL1 RhoGAP_OC 99.8 9E-20 2E-24 118.9 6.7 71 5-78 61-135 (220)
37 PF00620 RhoGAP: RhoGAP domain 99.8 1.9E-19 4.1E-24 110.4 7.4 73 5-77 11-83 (151)
38 cd04399 RhoGAP_fRGD2 RhoGAP_fR 99.8 2.6E-19 5.6E-24 116.3 7.2 66 14-79 42-110 (212)
39 KOG2710|consensus 99.8 2.3E-19 5.1E-24 125.0 6.7 75 5-79 105-182 (412)
40 cd00159 RhoGAP RhoGAP: GTPase- 99.8 8E-19 1.7E-23 108.9 8.0 74 5-79 11-84 (169)
41 KOG4270|consensus 99.8 3.3E-19 7.2E-24 128.3 6.3 75 5-81 178-252 (577)
42 KOG2200|consensus 99.7 3E-18 6.6E-23 122.7 6.7 75 5-79 327-402 (674)
43 KOG4407|consensus 99.7 4.9E-18 1.1E-22 129.1 6.3 76 5-80 1185-1264(1973)
44 KOG4269|consensus 99.7 1.7E-17 3.6E-22 122.9 6.3 72 7-78 933-1006(1112)
45 KOG3564|consensus 99.7 6.3E-17 1.4E-21 114.0 7.5 75 3-78 371-445 (604)
46 KOG1450|consensus 99.6 2.4E-15 5.3E-20 109.2 6.2 76 4-79 482-558 (650)
47 KOG1453|consensus 99.6 5.8E-15 1.3E-19 111.6 6.2 78 2-80 626-703 (918)
48 KOG4406|consensus 99.4 1.4E-13 3E-18 96.0 3.6 69 6-76 283-353 (467)
49 KOG1117|consensus 99.3 1.9E-12 4.2E-17 96.5 6.4 78 5-82 738-816 (1186)
50 KOG1452|consensus 99.3 6.5E-13 1.4E-17 90.5 3.6 77 2-78 208-286 (442)
51 KOG1451|consensus 99.3 1.2E-12 2.5E-17 94.7 4.9 76 5-80 399-478 (812)
52 KOG4271|consensus 99.2 6.1E-12 1.3E-16 94.2 1.9 75 4-79 942-1017(1100)
53 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.0 1.1E-09 2.4E-14 70.7 6.8 74 4-77 16-101 (198)
54 cd04405 RhoGAP_BRCC3-like RhoG 98.9 6.9E-09 1.5E-13 68.2 6.3 70 12-81 59-139 (235)
55 KOG4724|consensus 98.6 6.2E-09 1.3E-13 76.3 -0.6 76 3-80 105-180 (741)
56 KOG4370|consensus 98.2 1.3E-06 2.8E-11 61.8 3.8 76 5-80 82-196 (514)
57 KOG3565|consensus 97.6 3.4E-05 7.5E-10 57.4 2.1 70 6-76 230-301 (640)
58 PF08101 DUF1708: Domain of un 97.2 0.0015 3.3E-08 46.6 6.4 73 4-76 18-102 (420)
59 KOG4724|consensus 94.8 0.043 9.4E-07 41.3 3.7 72 5-77 442-517 (741)
60 KOG1453|consensus 77.1 1 2.2E-05 35.5 0.7 73 4-76 491-570 (918)
61 COG4835 Uncharacterized protei 77.1 2.9 6.2E-05 24.9 2.4 45 14-61 62-106 (124)
62 cd08048 TAF11 TATA Binding Pro 74.4 13 0.00027 21.0 4.5 51 20-75 17-82 (85)
63 KOG4370|consensus 61.3 11 0.00024 27.7 3.0 31 45-75 118-148 (514)
64 cd00068 GGL G protein gamma su 60.9 20 0.00044 18.4 3.3 39 22-68 5-45 (57)
65 COG2747 FlgM Negative regulato 58.9 33 0.00071 19.7 4.2 34 21-60 59-92 (93)
66 PF12025 Phage_C: Phage protei 49.3 20 0.00044 19.1 2.1 14 46-59 33-46 (68)
67 PF03471 CorC_HlyC: Transporte 49.3 9.6 0.00021 20.7 1.0 45 12-63 4-48 (81)
68 PF15643 Tox-PL-2: Papain fold 46.9 44 0.00096 19.5 3.5 17 45-61 19-35 (100)
69 PF00631 G-gamma: GGL domain; 41.8 13 0.00028 19.7 0.7 39 23-69 9-47 (68)
70 TIGR00114 lumazine-synth 6,7-d 39.3 59 0.0013 19.9 3.4 34 4-37 25-60 (138)
71 PF14149 YhfH: YhfH-like prote 39.3 16 0.00035 17.4 0.7 14 55-68 5-18 (37)
72 COG3272 Uncharacterized conser 38.0 38 0.00083 21.4 2.4 53 11-71 92-147 (163)
73 PF15063 TC1: Thyroid cancer p 37.7 59 0.0013 18.1 2.9 35 12-55 42-76 (79)
74 cd01493 APPBP1_RUB Ubiquitin a 37.2 81 0.0017 23.0 4.3 16 45-60 287-302 (425)
75 cd08788 CARD_NOD2_2_CARD15 Cas 35.8 61 0.0013 18.2 2.8 20 48-67 60-79 (81)
76 PF13113 DUF3970: Protein of u 34.2 52 0.0011 17.4 2.2 19 16-34 4-22 (60)
77 COG3189 Uncharacterized conser 32.9 94 0.002 18.7 3.4 37 24-60 80-116 (117)
78 TIGR03824 FlgM_jcvi flagellar 31.4 1E+02 0.0022 17.3 3.9 28 22-55 65-92 (95)
79 PF10104 Brr6_like_C_C: Di-sul 31.0 36 0.00077 20.7 1.5 46 15-61 62-108 (135)
80 PF00885 DMRL_synthase: 6,7-di 30.5 52 0.0011 20.2 2.2 33 5-37 29-63 (144)
81 PF10664 NdhM: Cyanobacterial 30.1 92 0.002 18.3 3.0 42 20-61 39-82 (108)
82 KOG0930|consensus 29.5 48 0.001 23.3 2.0 19 16-34 151-169 (395)
83 PF02084 Bindin: Bindin; Inte 29.4 1.3E+02 0.0029 20.2 4.0 57 21-79 102-161 (238)
84 PF04316 FlgM: Anti-sigma-28 f 28.0 92 0.002 15.7 4.1 29 21-55 26-54 (57)
85 PF08400 phage_tail_N: Prophag 27.9 47 0.001 20.4 1.6 31 51-81 83-113 (134)
86 PRK09689 prophage protein NinE 27.4 30 0.00066 17.7 0.6 11 12-22 10-20 (56)
87 TIGR03520 GldE gliding motilit 26.6 90 0.0019 22.4 3.1 50 13-64 330-379 (408)
88 cd03735 SOCS_SOCS1 SOCS (suppr 26.4 76 0.0017 15.5 2.0 16 50-65 28-43 (43)
89 PLN02404 6,7-dimethyl-8-ribity 26.2 1.3E+02 0.0028 18.6 3.4 34 4-37 32-67 (141)
90 PF08643 DUF1776: Fungal famil 25.8 1.6E+02 0.0035 20.5 4.1 61 3-67 22-82 (299)
91 PRK04115 hypothetical protein; 25.8 69 0.0015 19.8 2.1 23 12-35 79-101 (137)
92 cd03734 SOCS_CIS1 SOCS (suppre 25.7 81 0.0018 15.2 2.0 14 51-64 27-40 (41)
93 KOG2564|consensus 25.5 56 0.0012 23.0 1.8 23 45-67 128-150 (343)
94 PF10171 DUF2366: Uncharacteri 24.9 1.5E+02 0.0033 18.9 3.6 64 15-78 86-162 (173)
95 COG2901 Fis Factor for inversi 24.6 1.5E+02 0.0033 17.1 3.4 29 48-77 29-57 (98)
96 cd03736 SOCS_SOCS2 SOCS (suppr 24.3 91 0.002 14.9 2.0 15 50-64 26-40 (41)
97 COG1253 TlyC Hemolysins and re 22.0 1.4E+02 0.003 21.5 3.3 43 16-64 351-393 (429)
98 PRK15094 magnesium/cobalt effl 21.9 1.1E+02 0.0024 20.8 2.8 46 12-64 208-253 (292)
99 cd03737 SOCS_SOCS3 SOCS (suppr 21.8 86 0.0019 15.2 1.6 12 54-65 31-42 (42)
100 KOG4322|consensus 21.5 96 0.0021 23.0 2.4 20 46-65 457-476 (482)
101 PF08491 SE: Squalene epoxidas 21.4 52 0.0011 22.6 1.1 30 51-80 82-111 (276)
102 PF08349 DUF1722: Protein of u 21.0 1.4E+02 0.003 17.4 2.7 50 14-68 60-109 (117)
103 PF08799 PRP4: pre-mRNA proces 20.7 98 0.0021 13.9 1.6 15 54-68 1-15 (30)
104 PLN03076 ARF guanine nucleotid 20.5 3.8E+02 0.0082 23.7 5.8 67 15-82 705-776 (1780)
105 PF13309 HTH_22: HTH domain 20.4 36 0.00078 17.8 0.1 19 9-27 32-50 (64)
106 PF11644 DUF3256: Protein of u 20.3 94 0.002 20.3 2.0 19 51-69 9-27 (199)
107 COG1043 LpxA Acyl-[acyl carrie 20.1 1.2E+02 0.0026 20.7 2.6 28 7-34 192-219 (260)
No 1
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.90 E-value=9.7e-24 Score=135.90 Aligned_cols=76 Identities=24% Similarity=0.426 Sum_probs=66.1
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
+++++|+++|||||++|+.++++++++.+|++.... +....++|+||++||.|||+||+||+|.++|+.|+++++.
T Consensus 26 ~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~ 101 (200)
T cd04408 26 EIENRALGVQGIYRISGSKARVEKLCQAFENGRDLV-DLSGHSPHDITSVLKHFLKELPEPVLPFQLYDDFIALAKE 101 (200)
T ss_pred HHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCcc-CcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999999875322 2225799999999999999999999999999999987654
No 2
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=99.90 E-value=1.3e-23 Score=134.08 Aligned_cols=74 Identities=34% Similarity=0.571 Sum_probs=64.6
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+.+|||||+||+.++++++++.+|++... .....+++|+||++||.|||+||+||+|.++|+.|+++..
T Consensus 26 l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~-~~~~~~d~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~ 99 (186)
T cd04406 26 IEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANS-VNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMG 99 (186)
T ss_pred HHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCC-CCcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 5679999999999999999999999999987422 2222579999999999999999999999999999998653
No 3
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=99.90 E-value=1.2e-23 Score=135.55 Aligned_cols=76 Identities=26% Similarity=0.445 Sum_probs=64.5
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTEL 81 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~~ 81 (85)
++|++||++|||||++|+.+ +.++++.+|.+.... +....|+|+||++||.|||+||+||+|.++|+.|++++..+
T Consensus 25 ~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~-d~~~~dv~~va~~LK~ylReLPePLip~~~y~~fi~~~~~~ 100 (200)
T cd04388 25 AIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASV-DLEQFDVAALADALKRYLLDLPNPVIPAPVYSEMISRAQEV 100 (200)
T ss_pred HHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCC-CcccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHcc
Confidence 57899999999999999876 678999999863222 22257999999999999999999999999999999876543
No 4
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=99.90 E-value=1.6e-23 Score=133.69 Aligned_cols=75 Identities=33% Similarity=0.546 Sum_probs=65.3
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
.++++|+.+|||||++|+.++++++++.+|++.... ...+.++|+||++||.|||+||+||+|++.|+.|+.+..
T Consensus 25 ~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~-~~~~~d~h~va~lLK~flReLPepLi~~~~~~~~~~~~~ 99 (186)
T cd04407 25 HVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENV-KLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVE 99 (186)
T ss_pred HHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCccc-CcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHH
Confidence 357899999999999999999999999999875332 222579999999999999999999999999999997653
No 5
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=99.90 E-value=2.1e-23 Score=133.80 Aligned_cols=76 Identities=33% Similarity=0.442 Sum_probs=65.4
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
+++++|+.+|||||++|+.++++++++.++++... ......|+|++|++||.|||+||+||+|.++|+.|++++..
T Consensus 27 ~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~-~~~~~~d~h~vaslLK~fLReLPePLi~~~~y~~~~~~~~~ 102 (193)
T cd04382 27 EIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTV-PNLSKVDIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEI 102 (193)
T ss_pred HHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCC-cccccCCHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHc
Confidence 35789999999999999999999999999987421 11224599999999999999999999999999999987654
No 6
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.89 E-value=3e-23 Score=134.56 Aligned_cols=74 Identities=28% Similarity=0.429 Sum_probs=65.4
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||++|+.++++++++.+|+|... ....+.++|++|++||.|||+||+||+|.++|+.|++++.
T Consensus 27 ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~-~~~~~~~~h~va~~LK~fLReLPePLi~~~~~~~~~~~~~ 100 (211)
T cd04409 27 IESRALCLKGIYRVNGAKSRVEKLCQAFENGKDL-VELSELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAK 100 (211)
T ss_pred HHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCc-cccccCCHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH
Confidence 5789999999999999999999999999988532 2222579999999999999999999999999999998764
No 7
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=99.89 E-value=3.2e-23 Score=133.23 Aligned_cols=75 Identities=37% Similarity=0.589 Sum_probs=65.5
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCcc-ccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE-DALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~-~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||+||+.++++++++.+|++..+.. .....|+|+||++||.|||+||+||+|+++|+.|++++.
T Consensus 27 l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLPePLip~~~y~~~~~~~~ 102 (196)
T cd04387 27 VERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFTDELYPNFAEGIA 102 (196)
T ss_pred HHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHH
Confidence 568899999999999999999999999998754322 223479999999999999999999999999999998654
No 8
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=99.89 E-value=3.7e-23 Score=132.15 Aligned_cols=75 Identities=29% Similarity=0.458 Sum_probs=64.9
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCcc-ccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE-DALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~-~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||+||+.++++++++.+|+|..... .....|+|+||++||.|||+||+||+|.++|+.|+++..
T Consensus 29 l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK~fLReLPepLip~~~~~~~~~~~~ 104 (188)
T cd04383 29 INLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLKLYFRGLENPLFPKERFEDLMSCVK 104 (188)
T ss_pred HHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 457899999999999999999999999999864322 222469999999999999999999999999999997543
No 9
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=99.89 E-value=3.4e-23 Score=132.77 Aligned_cols=75 Identities=32% Similarity=0.592 Sum_probs=64.6
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCC--CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC--IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~--~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||+||+.++++++++.+|++. .++......|+|+||++||.|||+||+||+|.++|+.|+++..
T Consensus 27 l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~flReLP~pLi~~~~~~~~~~~~~ 103 (194)
T cd04372 27 IEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAK 103 (194)
T ss_pred HHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 56899999999999999999999999999753 3333222358999999999999999999999999999998654
No 10
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=99.89 E-value=3.7e-23 Score=133.39 Aligned_cols=76 Identities=26% Similarity=0.456 Sum_probs=66.3
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
+++++|+++|||||++|+.++++++++.++++... ....+.++|++|++||.|||+||+||+|.++|+.|++++..
T Consensus 26 ~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~-~~~~~~~~h~va~~LK~fLReLpePlip~~~y~~~~~~~~~ 101 (203)
T cd04378 26 EIENRALGVQGIYRVSGSKARVEKLCQAFENGKDL-VELSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKE 101 (203)
T ss_pred HHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCc-cccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999987522 22335799999999999999999999999999999987653
No 11
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=99.89 E-value=3e-23 Score=131.94 Aligned_cols=74 Identities=42% Similarity=0.600 Sum_probs=65.2
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
++++|+++|||||+||+.++++++++.+|++... +..++|+|++|++||.|||+||+||+|.++|+.|.+++..
T Consensus 31 l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~--~~~~~d~h~va~lLK~fLReLP~pLi~~~~~~~~~~~~~~ 104 (182)
T cd04381 31 VEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESP--NLEEYEPPTVASLLKQYLRELPEPLLTKELMPRFEEACGR 104 (182)
T ss_pred HHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCC--CccccChHHHHHHHHHHHHhCCCccCCHHHHHHHHHHcCC
Confidence 4688999999999999999999999999998532 2224799999999999999999999999999999887643
No 12
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.89 E-value=4.7e-23 Score=133.49 Aligned_cols=72 Identities=38% Similarity=0.532 Sum_probs=62.5
Q ss_pred hcCCCCcceeecCCCHHHHHHHHHHHhhCCC-CccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 7 KIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 7 ~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~-~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
+.|+++|||||+||+.+++++|++.+|+|.. ++. ..++++|+||++||.|||+||+||+|.++|+.|+++..
T Consensus 21 ~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~-~~~~~~h~va~lLK~flReLPePLi~~~~y~~~~~i~~ 93 (208)
T cd04392 21 EKNLRVEGLFRKPGNSARQQELRDLLNSGTDLDLE-SGGFHAHDCATVLKGFLGELPEPLLTHAHYPAHLQIAD 93 (208)
T ss_pred HhCCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcc-cccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHH
Confidence 3499999999999999999999999999853 332 22468999999999999999999999999999987543
No 13
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.89 E-value=3.6e-23 Score=132.02 Aligned_cols=76 Identities=33% Similarity=0.593 Sum_probs=65.7
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCC-CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~-~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
++++|+++|||||+||+.+.+++++..+|.+. .+.......|+|++|++||.|||+||+||+|++.|+.|++++..
T Consensus 27 l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLPepLi~~~~~~~~~~~~~~ 103 (187)
T cd04403 27 VEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKL 103 (187)
T ss_pred HHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHC
Confidence 56899999999999999999999999999874 23332224699999999999999999999999999999986653
No 14
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.89 E-value=4e-23 Score=133.75 Aligned_cols=75 Identities=37% Similarity=0.583 Sum_probs=64.3
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCC--CccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCI--KFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~--~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||++|+.+++++|++.+|++.. +.......|+|+||++||.|||+||+||+|.++|+.|+++..
T Consensus 29 L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lLK~fLReLPePLip~~~y~~~~~~~~ 105 (207)
T cd04379 29 IERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVLKDYLRELPEPLITPQLYEMVLEALA 105 (207)
T ss_pred HHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 567899999999999999999999999998742 322221248999999999999999999999999999998654
No 15
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.89 E-value=4.8e-23 Score=133.72 Aligned_cols=74 Identities=31% Similarity=0.510 Sum_probs=64.8
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTC 78 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~ 78 (85)
++++|+++|||||++|+.++++++++.+|++.....+....++|++|++||.|||+||+||+|.++|+.|+++.
T Consensus 38 l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~~~va~lLK~flReLPepLi~~~~y~~~i~~~ 111 (213)
T cd04397 38 MRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQ 111 (213)
T ss_pred HHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHH
Confidence 56789999999999999999999999999875332233346899999999999999999999999999999754
No 16
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.89 E-value=6.1e-23 Score=132.77 Aligned_cols=74 Identities=28% Similarity=0.418 Sum_probs=64.8
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||++|+.++++++++.+|+|...... ...++|+||++||.|||+||+||+|.++|+.|+++..
T Consensus 20 l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~-~~~~~h~va~lLK~fLReLPePLi~~~~y~~~i~~~~ 93 (206)
T cd04376 20 LEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLD-ENHSVHDVAALLKEFFRDMPDPLLPRELYTAFIGTAL 93 (206)
T ss_pred HHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHc
Confidence 4678999999999999999999999999998532222 1469999999999999999999999999999997654
No 17
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=99.89 E-value=7.9e-23 Score=131.39 Aligned_cols=74 Identities=41% Similarity=0.616 Sum_probs=64.7
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||++|+.++++++++.+|++.....+. ..|+|++|++||.|||+||+||+|.+.|+.|+.+..
T Consensus 33 l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~-~~d~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~ 106 (199)
T cd04390 33 IREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDS-DTDVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQ 106 (199)
T ss_pred HHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccc-cCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 46789999999999999999999999999986432222 479999999999999999999999999999987543
No 18
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.88 E-value=6.8e-23 Score=130.87 Aligned_cols=72 Identities=35% Similarity=0.451 Sum_probs=64.2
Q ss_pred hhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 6 KKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 6 ~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
+.+|+++|||||++|+.++++++++.+|++..+... ..|+|++|++||.|||+||+||+|.++|+.++++..
T Consensus 34 ~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~--~~d~h~va~lLK~fLReLpePli~~~~~~~~i~~~~ 105 (187)
T cd04389 34 ALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSG--LEDPHVPASLLKLWLRELEEPLIPDALYQQCISASE 105 (187)
T ss_pred HcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccc--cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc
Confidence 468999999999999999999999999998755322 468999999999999999999999999999997643
No 19
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.88 E-value=1.7e-22 Score=131.81 Aligned_cols=74 Identities=28% Similarity=0.445 Sum_probs=64.0
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||+||+.+++++|++.+|++... ......++|+||++||.|||+||+||+|.++|+.|+++..
T Consensus 31 L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~-~~~~~~~~~~va~lLK~flReLPePLlt~~l~~~fi~~~~ 104 (220)
T cd04375 31 LRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDN-VNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQ 104 (220)
T ss_pred HHHhCCCccceeecCCcHHHHHHHHHHHhcCCCc-cCcccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 5689999999999999999999999999986322 1222468999999999999999999999999999997653
No 20
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.87 E-value=2.6e-22 Score=127.82 Aligned_cols=75 Identities=33% Similarity=0.479 Sum_probs=64.6
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCc-cccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKF-EDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~-~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+.+|||||+||+.++++++++.++++.... ......++|++|+++|.|||+||+||+|.++|+.|+++.+
T Consensus 26 l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLreLP~pLi~~~~~~~~~~~~~ 101 (184)
T cd04385 26 ITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDLPDPLLTSELHAEWIEAAE 101 (184)
T ss_pred HHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 46789999999999999999999999998864322 1122579999999999999999999999999999998654
No 21
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.87 E-value=2.5e-22 Score=127.99 Aligned_cols=74 Identities=24% Similarity=0.544 Sum_probs=64.7
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCC-CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~-~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+.+|||||++|+.++++++++.++++. .++.. .+.++|++|+++|+|||+||+||+|+++|+.|.+++.
T Consensus 26 l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~-~~~~~~~va~~lK~fLreLPePlip~~~~~~~~~~~~ 100 (185)
T cd04373 26 IEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVS-KDFTVNAVAGALKSFFSELPDPLIPYSMHLELVEAAK 100 (185)
T ss_pred HHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCccc-ccCcHHHHHHHHHHHHhcCCchhccHHHHHHHHHHHh
Confidence 45699999999999999999999999999874 33322 2568999999999999999999999999999997654
No 22
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.87 E-value=3.6e-22 Score=128.22 Aligned_cols=75 Identities=33% Similarity=0.555 Sum_probs=63.9
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCC-Ccccc-ccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDA-LEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~-~~~~~-~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
++++|+ +|||||+||+.++++++++.+|++.. +.... ...|+|++|++||.|||+||+||+|.++|+.|+++...
T Consensus 29 l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~flReLPePLi~~~~y~~~~~~~~~ 105 (195)
T cd04384 29 IEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSA 105 (195)
T ss_pred HHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc
Confidence 577898 69999999999999999999999853 22211 23599999999999999999999999999999987653
No 23
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.87 E-value=4.4e-22 Score=130.18 Aligned_cols=75 Identities=29% Similarity=0.372 Sum_probs=64.1
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCC--CccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCI--KFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~--~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||++|+.+++++|++.+|++.. ...+..++++|++|++||.|||+||+||+|.++|+.|.+.+.
T Consensus 43 l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~ 119 (225)
T cd04396 43 LKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLR 119 (225)
T ss_pred HHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcCCccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHH
Confidence 467899999999999999999999999998631 112223579999999999999999999999999999987554
No 24
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.87 E-value=5.3e-22 Score=128.18 Aligned_cols=76 Identities=36% Similarity=0.646 Sum_probs=62.8
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHH-HhhC-----CCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHH
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTC-LDAH-----CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLT 77 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~-~d~~-----~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~ 77 (85)
.++++|+++|||||+||+.++++++++. +|.+ ..+.... ..|+|+||++||.|||+||+||+|+++|+.|+++
T Consensus 38 ~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~-~~d~h~va~lLK~fLReLPePLi~~~~y~~~i~~ 116 (203)
T cd04374 38 AVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNS-EWEIKTITSALKTYLRNLPEPLMTYELHNDFINA 116 (203)
T ss_pred HHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccc-cccHHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Confidence 3567999999999999999999999875 5654 1222221 4689999999999999999999999999999986
Q ss_pred hhh
Q psy14752 78 CTE 80 (85)
Q Consensus 78 ~~~ 80 (85)
+..
T Consensus 117 ~~~ 119 (203)
T cd04374 117 AKS 119 (203)
T ss_pred HhC
Confidence 653
No 25
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.87 E-value=6.4e-22 Score=128.68 Aligned_cols=73 Identities=36% Similarity=0.463 Sum_probs=62.7
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCC-CccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHH
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLT 77 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~-~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~ 77 (85)
++++|+++|||||+||+.++++++++.+|++.. ........++|++|++||.|||+||+||+|.++|+.|+++
T Consensus 33 l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va~lLK~flReLPePLi~~~~~~~~~~~ 106 (216)
T cd04391 33 LEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSV 106 (216)
T ss_pred HHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHH
Confidence 457999999999999999999999999998632 1122224699999999999999999999999999999874
No 26
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=99.86 E-value=1.4e-21 Score=124.63 Aligned_cols=74 Identities=38% Similarity=0.576 Sum_probs=64.3
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||++|+.++++++++.+|++... .....+++|++|++||.|||+||+||+|++.|+.|++++.
T Consensus 26 l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~-~~~~~~~~~~va~~LK~flr~LpepLi~~~~~~~~~~~~~ 99 (186)
T cd04377 26 IEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDS-VNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAME 99 (186)
T ss_pred HHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcc-cCcccCCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHh
Confidence 4578999999999999999999999999997422 2222579999999999999999999999999999997654
No 27
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=99.86 E-value=2.2e-21 Score=123.90 Aligned_cols=74 Identities=32% Similarity=0.485 Sum_probs=64.7
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCC-CccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~-~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
++++|+.+|||||++|+.++++++++.+|+|.. ++.. +.++|++|+++|.|||+||+||+|.+.|+.|+++...
T Consensus 31 l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~--~~d~~~va~~lK~flr~Lp~pLi~~~~~~~l~~~~~~ 105 (189)
T cd04393 31 LEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSK--EADVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQD 105 (189)
T ss_pred HHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccc--cCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999999853 3222 4799999999999999999999999999999876543
No 28
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.86 E-value=1.9e-21 Score=125.36 Aligned_cols=75 Identities=51% Similarity=0.734 Sum_probs=65.2
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCcc-ccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE-DALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~-~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||++|+.++++.+++.+|+|..... .....++|++|++||.|||+||+||+|.++|+.|++++.
T Consensus 31 L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~lK~fLreLp~pli~~~~~~~~~~~~~ 106 (203)
T cd04386 31 LLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAAN 106 (203)
T ss_pred HHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHc
Confidence 568899999999999999999999999999864321 111368999999999999999999999999999998654
No 29
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.85 E-value=2e-21 Score=125.32 Aligned_cols=68 Identities=35% Similarity=0.479 Sum_probs=60.9
Q ss_pred cCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHh
Q psy14752 8 IGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTC 78 (85)
Q Consensus 8 ~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~ 78 (85)
+|+++|||||+||+.++++++++.+|+|..... ..++|+||++||.|||+||+||+|.++|+.|+++.
T Consensus 33 ~~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~---~~~~~~vaslLK~flReLPePLi~~~~~~~~~~~~ 100 (202)
T cd04394 33 DHLSTEGLFRKSGSVVRQKELKAKLEGGEACLS---SALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQ 100 (202)
T ss_pred HCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCcc---ccCHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHH
Confidence 479999999999999999999999999864322 35899999999999999999999999999999754
No 30
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.85 E-value=1.7e-21 Score=124.69 Aligned_cols=72 Identities=28% Similarity=0.330 Sum_probs=64.6
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCC-CccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~-~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+.+|||||++|+.++++++++.+|++.. ++ ...++|++|+++|.|||+||+||+|.+.|+.|++++.
T Consensus 26 l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~---~~~~~~~va~~lK~flreLpepLi~~~~~~~~~~~~~ 98 (192)
T cd04402 26 LYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDL---KAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALD 98 (192)
T ss_pred HHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCC---ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHc
Confidence 467899999999999999999999999999853 32 2579999999999999999999999999999998664
No 31
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.85 E-value=3.3e-21 Score=123.70 Aligned_cols=74 Identities=28% Similarity=0.478 Sum_probs=64.5
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCc--cccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKF--EDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTC 78 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~--~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~ 78 (85)
++++|+++|||||+||+.++++++++.+|++.... ......|+|++|++||.|||+||+||+|.+.|+.|+++.
T Consensus 29 l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~llK~flr~Lp~pli~~~~~~~~i~~~ 104 (196)
T cd04395 29 VEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPLFTNELYPDFIEAN 104 (196)
T ss_pred HHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHH
Confidence 56899999999999999999999999999986432 222236899999999999999999999999999998754
No 32
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.85 E-value=4e-21 Score=122.75 Aligned_cols=75 Identities=35% Similarity=0.605 Sum_probs=64.3
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCC--cc--ccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIK--FE--DALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~--~~--~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||++|+..+++++++.+|++... .. .....|+|++|++||.|||+||+||+|.++|+.|++++.
T Consensus 27 l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~LK~fLreLp~pLi~~~~~~~~~~~~~ 105 (192)
T cd04398 27 IENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAK 105 (192)
T ss_pred HHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 4578999999999999999999999999987532 21 112468999999999999999999999999999998654
No 33
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.84 E-value=1.1e-20 Score=120.83 Aligned_cols=75 Identities=37% Similarity=0.498 Sum_probs=63.1
Q ss_pred hhhcC-CCCcceeecCCCHHHHHHHHHHHhhCC-CCcccc-ccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIG-MDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDA-LEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~g-l~~eGifR~~g~~~~~~~l~~~~d~~~-~~~~~~-~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++| +.+|||||++|+.++++++++.++++. .+.... ...++|+||+++|.|||+||+||+|.++|+.|.++.+
T Consensus 33 l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~va~lLK~flreLP~PLi~~~~~~~~~~~~~ 110 (190)
T cd04400 33 LDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVE 110 (190)
T ss_pred HHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHh
Confidence 45555 899999999999999999999999873 333221 2469999999999999999999999999999987554
No 34
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.82 E-value=5.5e-20 Score=117.85 Aligned_cols=72 Identities=31% Similarity=0.435 Sum_probs=62.5
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCC-CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTC 78 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~-~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~ 78 (85)
++++|+++|||||++|+.++++++++.+|++. .++.. ..|+|++|++||.|||+||+||+|.+.|+.+++..
T Consensus 34 l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~--~~d~~~va~~LK~~lr~Lp~pLi~~~~~~~l~~~~ 106 (195)
T cd04404 34 LQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQ--YEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFL 106 (195)
T ss_pred HHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCccc--ccCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHH
Confidence 45699999999999999999999999999985 33221 14999999999999999999999999999998643
No 35
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.81 E-value=1.3e-19 Score=113.72 Aligned_cols=75 Identities=44% Similarity=0.673 Sum_probs=65.5
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++|||||++|+.++++++++.++++.........+++|++|+++|.|||+||+||+|.+.|+.|++++.
T Consensus 14 l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~~~~~~~~ 88 (174)
T smart00324 14 LEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYEEFIEAAK 88 (174)
T ss_pred HHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 456899999999999999999999999999864321223579999999999999999999999999999998665
No 36
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.80 E-value=9e-20 Score=118.91 Aligned_cols=71 Identities=27% Similarity=0.359 Sum_probs=63.7
Q ss_pred hhhcCCCCcceeecCCCHHH----HHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHh
Q psy14752 5 KKKIGMDEEGLFRVTGGASK----VKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTC 78 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~----~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~ 78 (85)
++++|+.+|||||++|+.+. ++++++.+|++.... ...++|++|++||.|||+||+||+|+++|+.|+++.
T Consensus 61 L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~---~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~ 135 (220)
T cd04380 61 LYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN---SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAV 135 (220)
T ss_pred HHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHh
Confidence 45689999999999999999 999999999985332 247999999999999999999999999999999864
No 37
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.80 E-value=1.9e-19 Score=110.43 Aligned_cols=73 Identities=37% Similarity=0.589 Sum_probs=62.5
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHH
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLT 77 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~ 77 (85)
++++|+.++||||++|+.++++++++.++.+..........++|++|+++|.||++||+||+|.++|+.|+.+
T Consensus 11 l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~~~~ 83 (151)
T PF00620_consen 11 LEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKFIAA 83 (151)
T ss_dssp HHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHHHHH
T ss_pred HHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHHhhh
Confidence 4669999999999999999999999999998654213335899999999999999999999999999999963
No 38
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.79 E-value=2.6e-19 Score=116.30 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=56.4
Q ss_pred ceeecCCCHHHHHHHHHHHhhCCC-Cccc--cccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 14 GLFRVTGGASKVKRLKTCLDAHCI-KFED--ALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 14 GifR~~g~~~~~~~l~~~~d~~~~-~~~~--~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
||||+||+.+.+++||+.+|++.. +... ..++++|+||++||.|||+||+||+|+++|+.|.++..
T Consensus 42 Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~va~~LK~ylReLPepL~~~~~y~~~~~~~~ 110 (212)
T cd04399 42 NVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYS 110 (212)
T ss_pred eEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHH
Confidence 999999999999999999999742 2111 22578999999999999999999999999999986543
No 39
>KOG2710|consensus
Probab=99.79 E-value=2.3e-19 Score=124.99 Aligned_cols=75 Identities=33% Similarity=0.554 Sum_probs=67.5
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCC---CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC---IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~---~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+++.||||+.|+..++++|++.||++. .+...+.++++|++|++||.|||+||+||+|.++|+.|+..+.
T Consensus 105 lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~k 182 (412)
T KOG2710|consen 105 LKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAK 182 (412)
T ss_pred HHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhc
Confidence 57899999999999999999999999999984 4555555679999999999999999999999999999997654
No 40
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.78 E-value=8e-19 Score=108.95 Aligned_cols=74 Identities=43% Similarity=0.625 Sum_probs=65.2
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++|+.++||||++|+..+++++++.++.+.... .....++|++|+++|.|||+||+||+|.+.|+.|++++.
T Consensus 11 l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~-~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~ 84 (169)
T cd00159 11 LEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDID-DLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAK 84 (169)
T ss_pred HHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCc-cccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHH
Confidence 45699999999999999999999999999986432 222579999999999999999999999999999998764
No 41
>KOG4270|consensus
Probab=99.78 E-value=3.3e-19 Score=128.26 Aligned_cols=75 Identities=44% Similarity=0.585 Sum_probs=66.8
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTEL 81 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~~ 81 (85)
..+.|++.|||||+.|..++++.+|+.+|.+.++... ..|+|++|++||.|||+||+|++++++|+.|++++...
T Consensus 178 ~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~--~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~ 252 (577)
T KOG4270|consen 178 LLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQL--YIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCE 252 (577)
T ss_pred hhhcCccccceeccCCCchHHHHHHHHHcCCcccccc--cCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhcc
Confidence 3578999999999999999999999999999765443 57999999999999999999999999999999766543
No 42
>KOG2200|consensus
Probab=99.75 E-value=3e-18 Score=122.65 Aligned_cols=75 Identities=29% Similarity=0.436 Sum_probs=64.6
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCC-ccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIK-FEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~-~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
++++||+++||||+||.+++|++|++.++..... .+.+.....|++|.+||.|||+||+||+|..+.+.|+.++.
T Consensus 327 lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~ 402 (674)
T KOG2200|consen 327 LRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQ 402 (674)
T ss_pred HHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHh
Confidence 5789999999999999999999999999875322 23333458999999999999999999999999999997664
No 43
>KOG4407|consensus
Probab=99.73 E-value=4.9e-18 Score=129.10 Aligned_cols=76 Identities=32% Similarity=0.567 Sum_probs=67.4
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCC----CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC----IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~----~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
+|.+||.+.||||+|||+..|..|++.++++. ++..+.-+.|+++|.++||.|||.|||||+|.++|..|+++-+.
T Consensus 1185 VEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk 1264 (1973)
T KOG4407|consen 1185 VETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLKMFLRKLPEPLLTDKLYPFFIEANRK 1264 (1973)
T ss_pred HhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHHHHHHhCCcccccccchhhhhhhccc
Confidence 68999999999999999999999999999873 34444446799999999999999999999999999999987543
No 44
>KOG4269|consensus
Probab=99.71 E-value=1.7e-17 Score=122.94 Aligned_cols=72 Identities=43% Similarity=0.651 Sum_probs=63.8
Q ss_pred hcCCCCcceeecCCCHHHHHHHHHHHhhC-CCCccccc-cCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHh
Q psy14752 7 KIGMDEEGLFRVTGGASKVKRLKTCLDAH-CIKFEDAL-EYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTC 78 (85)
Q Consensus 7 ~~gl~~eGifR~~g~~~~~~~l~~~~d~~-~~~~~~~~-~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~ 78 (85)
.+|++.|||||++|+.+.|+.|++.||.+ +.++.... +.|+|+||++||.|||+||+||++.+.|..|-...
T Consensus 933 ~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i 1006 (1112)
T KOG4269|consen 933 CRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGI 1006 (1112)
T ss_pred ccccchhceEEecccHHHHHHHHHHhccccCchhhhccccccHHHHHHHHHHHHHhCCccccchhhhHHHHhhc
Confidence 79999999999999999999999999998 55554332 35899999999999999999999999999997643
No 45
>KOG3564|consensus
Probab=99.70 E-value=6.3e-17 Score=114.02 Aligned_cols=75 Identities=32% Similarity=0.408 Sum_probs=67.5
Q ss_pred chhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHh
Q psy14752 3 ISKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTC 78 (85)
Q Consensus 3 ~~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~ 78 (85)
-|+|.+||.++||||+||....+++|++.+-.+... .+....|+|++|+++|.|||+|.+||||......|.+|+
T Consensus 371 neIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~-p~~g~~Dihvic~~lKdFLR~LkePLip~~~~rdf~eAa 445 (604)
T KOG3564|consen 371 NEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTT-PHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRRDFMEAA 445 (604)
T ss_pred HHHHHccccccceeeccccHHHHHHHHHHHhccCCC-CccCCcchhHHHHHHHHHHHhcccccccchHHHHHHHHh
Confidence 489999999999999999999999999999888642 333356999999999999999999999999999999876
No 46
>KOG1450|consensus
Probab=99.59 E-value=2.4e-15 Score=109.24 Aligned_cols=76 Identities=29% Similarity=0.532 Sum_probs=66.3
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCC-CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~-~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
.+|..|++++||||+||+...|+.|+.++|.+. .++....+.++|.|+++||.|||+||+||+|..++..|..+..
T Consensus 482 ~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~ 558 (650)
T KOG1450|consen 482 HIEKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQ 558 (650)
T ss_pred HHhhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhc
Confidence 478999999999999999999999999999653 4444433469999999999999999999999999999986544
No 47
>KOG1453|consensus
Probab=99.56 E-value=5.8e-15 Score=111.61 Aligned_cols=78 Identities=26% Similarity=0.367 Sum_probs=69.3
Q ss_pred cchhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 2 KISKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 2 ~~~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
..+++.+|+.+|||||++|...++++|.+.++++. ......+.++|++++++|.|||+||+||++.++|+.|+.+...
T Consensus 626 ~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~-~~v~l~~~dih~vtsVlK~yLr~Lp~pIi~f~~y~~~~~~~~~ 703 (918)
T KOG1453|consen 626 LREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGD-ALVLLSTPDIHAVTSVLKLYLRKLPEPIIIFNLYDEFLSAAKL 703 (918)
T ss_pred HHHHHHhhhhccceeeccccHHHHHHHHHHhcCCc-cceecCCCChHHHHHHHHHHHHhccccccccchHHHHHhhhcc
Confidence 35889999999999999999999999999999987 3334446799999999999999999999999999999987654
No 48
>KOG4406|consensus
Probab=99.41 E-value=1.4e-13 Score=95.97 Aligned_cols=69 Identities=32% Similarity=0.449 Sum_probs=59.6
Q ss_pred hhcC-CCCcceeecCCCHHHHHHHHHHHhhCC-CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHH
Q psy14752 6 KKIG-MDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLL 76 (85)
Q Consensus 6 ~~~g-l~~eGifR~~g~~~~~~~l~~~~d~~~-~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~ 76 (85)
+.+| +++||+||.|++.+.+.++++..++|. +++... .++|..|.++|.|||+||+||++.++|+....
T Consensus 283 ~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~--~~~h~~avllKtF~R~LpePL~t~~~y~~lt~ 353 (467)
T KOG4406|consen 283 QAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVY--KDLHAPAVLLKTFLRSLPEPLLTFRLYESLTG 353 (467)
T ss_pred hccceecccceeccccCccchHHHHHHhcCCCcccHHHh--ccchhhHHHHHHHHhcCCcccchhhhhhhhhc
Confidence 4566 999999999999999999999999984 555432 34999999999999999999999999987653
No 49
>KOG1117|consensus
Probab=99.35 E-value=1.9e-12 Score=96.46 Aligned_cols=78 Identities=26% Similarity=0.395 Sum_probs=66.3
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCc-cccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhhhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKF-EDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTELT 82 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~-~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~~~ 82 (85)
+-++||.+|||||+.|...++..|-..|-.+...+ ....+..+.+|+++||+|||+|++||+|..+|..|++++...+
T Consensus 738 VTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~~~~~~w~eaae~~d 816 (1186)
T KOG1117|consen 738 VTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTKELYPYWIEAAETQD 816 (1186)
T ss_pred HHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccchhhhhhHHHhhhccc
Confidence 45899999999999999999999999998875422 1222468999999999999999999999999999998775443
No 50
>KOG1452|consensus
Probab=99.35 E-value=6.5e-13 Score=90.51 Aligned_cols=77 Identities=31% Similarity=0.374 Sum_probs=65.9
Q ss_pred cchhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCcccc--ccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHh
Q psy14752 2 KISKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDA--LEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTC 78 (85)
Q Consensus 2 ~~~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~--~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~ 78 (85)
|=|+|++|++.-|+|++.|+..+.+-||..|+.+..++... .-.|.+.|++++|.|+|+||||+++.+.++.-+++.
T Consensus 208 ~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~~kD~lrElpEPl~t~~~f~m~~dA~ 286 (442)
T KOG1452|consen 208 YAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGDSKDELRELPEPLVTGQDFEMDFDAA 286 (442)
T ss_pred HHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecccHhHHHhCCCccccchhhhhhhhhh
Confidence 56899999999999999999999999999999876444322 125889999999999999999999999888777664
No 51
>KOG1451|consensus
Probab=99.35 E-value=1.2e-12 Score=94.69 Aligned_cols=76 Identities=33% Similarity=0.537 Sum_probs=63.0
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHH-HhhC---CCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTC-LDAH---CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~-~d~~---~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
+|.+|+..+|+||..|..++|++|... ||-. +.+.....++++-++++.||.|||.||+||++++++..|+.|+..
T Consensus 399 ~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LHk~FI~AAKs 478 (812)
T KOG1451|consen 399 LETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELHKVFINAAKS 478 (812)
T ss_pred HHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHHHHHHHHHhc
Confidence 578999999999999999999998875 3322 233333235799999999999999999999999999999987654
No 52
>KOG4271|consensus
Probab=99.19 E-value=6.1e-12 Score=94.23 Aligned_cols=75 Identities=27% Similarity=0.479 Sum_probs=66.2
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhC-CCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAH-CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~-~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
.++..|+.+||+||++|+.++.++++..|.++ +.+..+. +..+|++|+.+|.||..||+|++|+.++..+.+++.
T Consensus 942 fiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~-d~~v~~vagAlksffa~Lpeplipys~h~~~~e~~k 1017 (1100)
T KOG4271|consen 942 FIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSM-DTTVNVVAGALKSFFACLPEPLIPYSYHPRLKEAMK 1017 (1100)
T ss_pred HHHhccchhhhheecCCCCccHHHHHHHHHhhcccccccc-ccccccccCcchhhhhhCCCcccCccCCcchhhhhh
Confidence 36789999999999999999999999999884 4555554 668999999999999999999999999999988665
No 53
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.03 E-value=1.1e-09 Score=70.72 Aligned_cols=74 Identities=24% Similarity=0.218 Sum_probs=61.1
Q ss_pred hhhhcCCCCcce---eecCCCHHHHHHH-HHHHhhCCCCc--cc-----cccCCHHHHHHHHHHHHhhCCCCCCCc-ccH
Q psy14752 4 SKKKIGMDEEGL---FRVTGGASKVKRL-KTCLDAHCIKF--ED-----ALEYDAHVLAGVLKLYLRELPEPLLTY-EGE 71 (85)
Q Consensus 4 ~~~~~gl~~eGi---fR~~g~~~~~~~l-~~~~d~~~~~~--~~-----~~~~~~~~va~~lK~flr~Lp~pLl~~-~~~ 71 (85)
|++.+|+++++| ||.+++.+.++.+ +..++.+.... .. ....++|+++++||-+||.||.++++. +.|
T Consensus 16 eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~~v~~~~~Y 95 (198)
T cd04401 16 ELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGSKVIWWEVY 95 (198)
T ss_pred HHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCCccCCHHHH
Confidence 788999999999 9999999999888 55677653211 11 113699999999999999999999999 999
Q ss_pred HHHHHH
Q psy14752 72 PFHLLT 77 (85)
Q Consensus 72 ~~~~~~ 77 (85)
..|...
T Consensus 96 ~~F~~~ 101 (198)
T cd04401 96 EEFKAR 101 (198)
T ss_pred HHHHHH
Confidence 999874
No 54
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=98.88 E-value=6.9e-09 Score=68.22 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=54.8
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCC-H----------HHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYD-A----------HVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~-~----------~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
+.|+|++++..+++...+++++..+.......+.. . -+|+.++++||++|||||+|..+|+.|+..+.-
T Consensus 59 vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~l 138 (235)
T cd04405 59 VVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILEL 138 (235)
T ss_pred hhcccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHH
Confidence 36899999999999999999998753321111111 2 289999999999999999999999999887653
Q ss_pred h
Q psy14752 81 L 81 (85)
Q Consensus 81 ~ 81 (85)
.
T Consensus 139 l 139 (235)
T cd04405 139 L 139 (235)
T ss_pred h
Confidence 3
No 55
>KOG4724|consensus
Probab=98.60 E-value=6.2e-09 Score=76.27 Aligned_cols=76 Identities=24% Similarity=0.223 Sum_probs=63.9
Q ss_pred chhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 3 ISKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 3 ~~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
+-.-..|.-++||||..++...++++++.+++|... ......+++.|+++|.|+|.+|..+++.++|+.|..+..+
T Consensus 105 ~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v--~l~~~~i~v~a~v~kdflr~ip~~~lSsdl~~hw~~~~~~ 180 (741)
T KOG4724|consen 105 LLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDV--GLKSGEIVVDAAVDKDFLRTIPQLTLSSDLNSHWQLQGPE 180 (741)
T ss_pred HHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccc--cccccceEEeehhhhchhhhchhhhhccccHHHHhhcccc
Confidence 344567889999999999999999999999998421 2224689999999999999999999999999999865543
No 56
>KOG4370|consensus
Probab=98.23 E-value=1.3e-06 Score=61.78 Aligned_cols=76 Identities=26% Similarity=0.296 Sum_probs=57.6
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHHHHhhCC--------------------CC-------c------------cccccC
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC--------------------IK-------F------------EDALEY 45 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~--------------------~~-------~------------~~~~~~ 45 (85)
.+.+|+-++|++|.+..+++.++++..-..+. +. + ....+.
T Consensus 82 ~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l 161 (514)
T KOG4370|consen 82 VEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQL 161 (514)
T ss_pred hhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHHHhhccccchhhc
Confidence 46889999999999998877766665433221 00 0 011235
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 46 DAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 46 ~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
++.+|||++|.|+|+||+|++|.++...|..++..
T Consensus 162 ~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h 196 (514)
T KOG4370|consen 162 TPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLH 196 (514)
T ss_pred CchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHcc
Confidence 78999999999999999999999999999887753
No 57
>KOG3565|consensus
Probab=97.60 E-value=3.4e-05 Score=57.36 Aligned_cols=70 Identities=30% Similarity=0.367 Sum_probs=58.0
Q ss_pred hhcCCCCcceee-cCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC-CCCcccHHHHHH
Q psy14752 6 KKIGMDEEGLFR-VTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP-LLTYEGEPFHLL 76 (85)
Q Consensus 6 ~~~gl~~eGifR-~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p-Ll~~~~~~~~~~ 76 (85)
+++|+..+|||| ++|....+..++.++..+..-.....+.+... |.++|.|+|.+.+| .++.+.+..+..
T Consensus 230 ~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~~~~~~~ 301 (640)
T KOG3565|consen 230 ERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFEDFGQPHD 301 (640)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCccccccchhh
Confidence 489999999999 99999999999999988832222222345666 99999999999999 999999998886
No 58
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=97.21 E-value=0.0015 Score=46.65 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=56.1
Q ss_pred hhhhcCCCCccee---ecCCCHHHHHHHHH-HHhhCCCC----c----cccccCCHHHHHHHHHHHHhhCCCCCCCcccH
Q psy14752 4 SKKKIGMDEEGLF---RVTGGASKVKRLKT-CLDAHCIK----F----EDALEYDAHVLAGVLKLYLRELPEPLLTYEGE 71 (85)
Q Consensus 4 ~~~~~gl~~eGif---R~~g~~~~~~~l~~-~~d~~~~~----~----~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~ 71 (85)
|+..+|+++++|| |-.-+.+.++.+.. .+..+... . ......++|+++++||--+..||..+++++.|
T Consensus 18 elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp~gvVgW~~Y 97 (420)
T PF08101_consen 18 ELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLPGGVVGWDSY 97 (420)
T ss_pred HHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcCCCccccHHH
Confidence 6789999999998 77667777766655 44444321 0 11113589999999999999999999999999
Q ss_pred HHHHH
Q psy14752 72 PFHLL 76 (85)
Q Consensus 72 ~~~~~ 76 (85)
..|..
T Consensus 98 ~~Fk~ 102 (420)
T PF08101_consen 98 EEFKR 102 (420)
T ss_pred HHHHH
Confidence 99975
No 59
>KOG4724|consensus
Probab=94.77 E-value=0.043 Score=41.34 Aligned_cols=72 Identities=18% Similarity=0.066 Sum_probs=47.4
Q ss_pred hhhcCCCCcceeecCCCHHHHHHHHH----HHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHH
Q psy14752 5 KKKIGMDEEGLFRVTGGASKVKRLKT----CLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLT 77 (85)
Q Consensus 5 ~~~~gl~~eGifR~~g~~~~~~~l~~----~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~ 77 (85)
+...+..++++||..-...-+.+-.. .+...... .+.....+|.+++++|.|.|.+|..++..+.+.++.++
T Consensus 442 l~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~-vdv~sspv~taasv~KdfnRKtpRgi~sr~ihke~~ea 517 (741)
T KOG4724|consen 442 LKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRP-VDVPSSPVHTAASVHKDFNRKTPRGIPSREIHKESMEA 517 (741)
T ss_pred HHhcCCCCCccCCCccchhhhhhcccccchhhhccCCc-ccCCCCCchHHHHHHHHhhhhcCCCccchHHHHHhhhh
Confidence 45678889999987443333322211 11121111 11213589999999999999999999999999888754
No 60
>KOG1453|consensus
Probab=77.12 E-value=1 Score=35.48 Aligned_cols=73 Identities=30% Similarity=0.463 Sum_probs=54.5
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccc---cc--cCCHHHHHHHHHHHHhhC--CCCCCCcccHHHHHH
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFED---AL--EYDAHVLAGVLKLYLREL--PEPLLTYEGEPFHLL 76 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~---~~--~~~~~~va~~lK~flr~L--p~pLl~~~~~~~~~~ 76 (85)
|.+..|....++||.+|....++..+..++.......+ .. ...+...++.++.++|.+ |.|......|..|.+
T Consensus 491 e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~sg~~~~~~r~~~~P~~c~~c~~~~~~~~ 570 (918)
T KOG1453|consen 491 ESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNLHSGALKHYLRSLRKPAPCRTCETYSWFME 570 (918)
T ss_pred ccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchhccCcchhhhhcccCCcccccccccchhhh
Confidence 45678899999999999999999998888865311111 11 123455566999999999 999888888887774
No 61
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.09 E-value=2.9 Score=24.94 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=32.3
Q ss_pred ceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhC
Q psy14752 14 GLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLREL 61 (85)
Q Consensus 14 GifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~L 61 (85)
.-|+++|-.|++.+++..+-..+.++. ..++-.+|.=|-.++..|
T Consensus 62 enfvisG~ISqi~~i~~~iv~e~sele---qeeve~La~Plld~lkRL 106 (124)
T COG4835 62 ENFVISGRISQINQIKDRIVKEPSELE---QEEVEGLAAPLLDMLKRL 106 (124)
T ss_pred eeeEEeeehHHHHHHHhHhccCHHHhh---HHHHHHHHHHHHHHHHHh
Confidence 348999999999999998865443322 347777777776777664
No 62
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=74.42 E-value=13 Score=20.96 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhC---------------CCCCCCcccHHHHH
Q psy14752 20 GGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLREL---------------PEPLLTYEGEPFHL 75 (85)
Q Consensus 20 g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~L---------------p~pLl~~~~~~~~~ 75 (85)
=+...++++........+ . +.-+-.++++-|-|..+| ..||-|.++.++|.
T Consensus 17 f~k~~iKr~~~~~~~~~v--~---~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~r 82 (85)
T cd08048 17 FPKAAIKRLIQSVTGQSV--S---QNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYR 82 (85)
T ss_pred ccHHHHHHHHHHHcCCCC--C---chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Confidence 345556666554422111 1 123566799999999999 89999999888775
No 63
>KOG4370|consensus
Probab=61.30 E-value=11 Score=27.66 Aligned_cols=31 Identities=39% Similarity=0.612 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCcccHHHHH
Q psy14752 45 YDAHVLAGVLKLYLRELPEPLLTYEGEPFHL 75 (85)
Q Consensus 45 ~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~ 75 (85)
.|+|+.++..|.|.+.+|+|.+|-++-..+.
T Consensus 118 aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r 148 (514)
T KOG4370|consen 118 ADAHDAAGLIKRFLRQIPEPVVPIEFPSVAR 148 (514)
T ss_pred HHHHHHHhHHHHhhhccCCccccccchHHHH
Confidence 4899999999999999999999977544443
No 64
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=60.92 E-value=20 Score=18.43 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhC--CCCCCCc
Q psy14752 22 ASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLREL--PEPLLTY 68 (85)
Q Consensus 22 ~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~L--p~pLl~~ 68 (85)
...+++|+..++...+ -+-.+|.-+..|..+- .+||++.
T Consensus 5 ~~~veqLr~el~~~Ri--------kvS~a~~~l~~y~e~~~~~Dpll~g 45 (57)
T cd00068 5 KKEVEQLRKELSRERL--------KVSKAAAELLKYCEQNAENDPLLTG 45 (57)
T ss_pred HHHHHHHHHHHCCchh--------hHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 3467788888766543 4566677888888877 7888865
No 65
>COG2747 FlgM Negative regulator of flagellin synthesis (anti-sigma28 factor) [Transcription / Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.86 E-value=33 Score=19.73 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhh
Q psy14752 21 GASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRE 60 (85)
Q Consensus 21 ~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~ 60 (85)
+..+|++|++++..|... .|..-||.-|-.|+.+
T Consensus 59 ~~~kVeeiK~aI~~G~yk------vD~~kiAd~ll~f~~~ 92 (93)
T COG2747 59 REEKVEELKQAIENGEYK------VDTEKIADKLLDFAKQ 92 (93)
T ss_pred hHHHHHHHHHHHHcCCee------ecHHHHHHHHHHHHhc
Confidence 457999999999998642 4778888877777764
No 66
>PF12025 Phage_C: Phage protein C; InterPro: IPR016407 This family of phage proteins is functionally uncharacterised. Proteins in this family are typically between 68 to 86 amino acids in length.; GO: 0019073 viral DNA genome packaging
Probab=49.27 E-value=20 Score=19.09 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHh
Q psy14752 46 DAHVLAGVLKLYLR 59 (85)
Q Consensus 46 ~~~~va~~lK~flr 59 (85)
=.+..+.++|.|||
T Consensus 33 wLNm~G~llkdWFr 46 (68)
T PF12025_consen 33 WLNMLGALLKDWFR 46 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 37889999999998
No 67
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=49.26 E-value=9.6 Score=20.70 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=31.2
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPE 63 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~ 63 (85)
.+|-|+++|+. .+.++.+.++.+ +.. .+.+++|+.+-.-+..+|.
T Consensus 4 ~~~~~~v~G~~-~l~~l~~~~~~~---l~~---~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 4 DDGTYIVSGST-PLDDLNELLGLD---LPE---EDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TTSEEEEETTS-BHHHHHHHHTS----TTT---TTTSBHHHHHHHHHTSS--
T ss_pred cCCEEEEEecC-CHHHHHHHHCcC---CCc---cchhhHHHHHHHHcCCCCC
Confidence 36889999985 566777777653 222 2566999999999988886
No 68
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=46.87 E-value=44 Score=19.50 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHhhC
Q psy14752 45 YDAHVLAGVLKLYLREL 61 (85)
Q Consensus 45 ~~~~~va~~lK~flr~L 61 (85)
..+..+|..+|.||++-
T Consensus 19 ~qC~~cA~Al~~~L~~~ 35 (100)
T PF15643_consen 19 FQCVECASALKQFLKQA 35 (100)
T ss_pred eehHHHHHHHHHHHHHC
Confidence 47888999999999853
No 69
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=41.77 E-value=13 Score=19.70 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcc
Q psy14752 23 SKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYE 69 (85)
Q Consensus 23 ~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~ 69 (85)
.+++.|+..++.... -+-.++.-|..|-..-++||+|..
T Consensus 9 ~ei~~L~~el~~~r~--------~vS~a~~~li~y~~~~~DPll~~~ 47 (68)
T PF00631_consen 9 REIEQLRQELERERI--------KVSKACKELIEYCESTPDPLLPGP 47 (68)
T ss_dssp HHHHHHHHHHTS------------HHHHHHHHHHHHHGTC-HHHHT-
T ss_pred HHHHHHHHHHcccce--------eHHHHHHHHHHHhcCCCCceeCCC
Confidence 455667776665332 455677778888888888887654
No 70
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=39.27 E-value=59 Score=19.94 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=26.0
Q ss_pred hhhhcCCCCc--ceeecCCCHHHHHHHHHHHhhCCC
Q psy14752 4 SKKKIGMDEE--GLFRVTGGASKVKRLKTCLDAHCI 37 (85)
Q Consensus 4 ~~~~~gl~~e--GifR~~g~~~~~~~l~~~~d~~~~ 37 (85)
++.++|...+ -+|++||.-.-.-..+....+++.
T Consensus 25 ~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~ 60 (138)
T TIGR00114 25 ALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETGKY 60 (138)
T ss_pred HHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCC
Confidence 3557787766 689999999888888888776653
No 71
>PF14149 YhfH: YhfH-like protein
Probab=39.26 E-value=16 Score=17.45 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=10.1
Q ss_pred HHHHhhCCCCCCCc
Q psy14752 55 KLYLRELPEPLLTY 68 (85)
Q Consensus 55 K~flr~Lp~pLl~~ 68 (85)
-.|||.||..-.+.
T Consensus 5 ~eFfrnLp~K~C~~ 18 (37)
T PF14149_consen 5 VEFFRNLPPKKCTE 18 (37)
T ss_pred HHHHHhCCCcccHH
Confidence 36999999766543
No 72
>COG3272 Uncharacterized conserved protein [Function unknown]
Probab=38.05 E-value=38 Score=21.41 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=36.6
Q ss_pred CCcceeecCCCHHHHHHHHHHHhhC---CCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccH
Q psy14752 11 DEEGLFRVTGGASKVKRLKTCLDAH---CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGE 71 (85)
Q Consensus 11 ~~eGifR~~g~~~~~~~l~~~~d~~---~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~ 71 (85)
.+.|-|+-.=+..+-+++.+.++.- ..++ ..--+++|.|+..-|+--++.+.|
T Consensus 92 HvqGYF~~~L~s~er~~l~e~Ie~YR~G~~PL--------laPit~lkhyla~fp~~YL~~Q~y 147 (163)
T COG3272 92 HVQGYFSRHLNSEERQELAELIESYRRGEQPL--------LAPITLLKHYLARFPDAYLAQQRY 147 (163)
T ss_pred HHHhhccHhhchHHHHHHHHHHHHHHcCCCcc--------cchHHHHHHHHHHCcchhhhhhcc
Confidence 3457787777777888888877763 3222 222478999999999877766543
No 73
>PF15063 TC1: Thyroid cancer protein 1
Probab=37.73 E-value=59 Score=18.09 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=22.4
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHH
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLK 55 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK 55 (85)
..++|+.+|+....+..+-.+..+ .|+..+|..|.
T Consensus 42 lqrLF~~sGD~kAEeRA~iI~~~~---------~d~ee~a~AL~ 76 (79)
T PF15063_consen 42 LQRLFQKSGDKKAEERARIIWECA---------QDPEEKARALM 76 (79)
T ss_pred HHHHHHHccchhHHHHHHHHHhhC---------CCHHHHHHHHH
Confidence 456777888777776666666543 35666666654
No 74
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=37.24 E-value=81 Score=22.96 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHhh
Q psy14752 45 YDAHVLAGVLKLYLRE 60 (85)
Q Consensus 45 ~~~~~va~~lK~flr~ 60 (85)
.+-..++.+||.|..+
T Consensus 287 ~~fwi~~~alk~F~~~ 302 (425)
T cd01493 287 SSFWIMARALKEFVAE 302 (425)
T ss_pred chHHHHHHHHHHHHHh
Confidence 4678899999999976
No 75
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=35.83 E-value=61 Score=18.21 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhCCCCCCC
Q psy14752 48 HVLAGVLKLYLRELPEPLLT 67 (85)
Q Consensus 48 ~~va~~lK~flr~Lp~pLl~ 67 (85)
+.+|..|..++.++|+|+-+
T Consensus 60 ~~A~~~ll~~vq~~~~~~~~ 79 (81)
T cd08788 60 EGAAKFLLEYVQQLPEPGSP 79 (81)
T ss_pred HHHHHHHHHHHHhCCCCCCC
Confidence 45567788889999998754
No 76
>PF13113 DUF3970: Protein of unknown function (DUF3970)
Probab=34.17 E-value=52 Score=17.36 Aligned_cols=19 Identities=11% Similarity=0.417 Sum_probs=17.1
Q ss_pred eecCCCHHHHHHHHHHHhh
Q psy14752 16 FRVTGGASKVKRLKTCLDA 34 (85)
Q Consensus 16 fR~~g~~~~~~~l~~~~d~ 34 (85)
-|+.|...++.++.+.|+.
T Consensus 4 VRl~G~~eEi~~fi~~~~~ 22 (60)
T PF13113_consen 4 VRLSGTKEEIEEFIKSFEK 22 (60)
T ss_pred EEecCCHHHHHHHHHhhhh
Confidence 4899999999999999987
No 77
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=32.90 E-value=94 Score=18.66 Aligned_cols=37 Identities=24% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhh
Q psy14752 24 KVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRE 60 (85)
Q Consensus 24 ~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~ 60 (85)
.+..|++....+.....-.....-|+=|.+|+.||.+
T Consensus 80 ~l~~L~~~~~~~~lTLlyaa~d~~hN~A~VL~~~L~~ 116 (117)
T COG3189 80 ALEDLLDIASHGPLTLLYAAKDEAHNHAVVLAELLEE 116 (117)
T ss_pred HHHHHHHHHcCCCeEEEEeeCchhhchHHHHHHHHhc
Confidence 5666777666655443322112348888999998865
No 78
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=31.44 E-value=1e+02 Score=17.31 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhCCCCccccccCCHHHHHHHHH
Q psy14752 22 ASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLK 55 (85)
Q Consensus 22 ~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK 55 (85)
..+|++||+.+..|.+. .|...||.-+-
T Consensus 65 ~~kV~~ik~aI~~G~Y~------vd~~~iA~~ml 92 (95)
T TIGR03824 65 AEKVAEIKAAIANGSYK------VDAEKIADKLL 92 (95)
T ss_pred HHHHHHHHHHHHcCCCC------CCHHHHHHHHH
Confidence 56788888888887643 36777776553
No 79
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=31.01 E-value=36 Score=20.69 Aligned_cols=46 Identities=13% Similarity=0.267 Sum_probs=34.0
Q ss_pred eeecCCCHHHHHHHHHHHhhCCCCccccccC-CHHHHHHHHHHHHhhC
Q psy14752 15 LFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYLREL 61 (85)
Q Consensus 15 ifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~-~~~~va~~lK~flr~L 61 (85)
-.|+|+-.+..++..+++++++...... .. ...++|.++-.|+..+
T Consensus 62 ~~rvPALe~~C~~We~CMn~Dp~~~~~~-~~l~ae~laeiiN~Fie~i 108 (135)
T PF10104_consen 62 ETRVPALEEQCDEWEKCMNRDPDSIGRS-SILSAETLAEIINSFIEPI 108 (135)
T ss_pred CCCCcHHHHHHHHHHHHHcCChHHhhHH-HHHHHHHHHHHHHHHHhHh
Confidence 5689999999999999998876433222 23 5778888888887654
No 80
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=30.47 E-value=52 Score=20.22 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=26.0
Q ss_pred hhhcCCCCc--ceeecCCCHHHHHHHHHHHhhCCC
Q psy14752 5 KKKIGMDEE--GLFRVTGGASKVKRLKTCLDAHCI 37 (85)
Q Consensus 5 ~~~~gl~~e--GifR~~g~~~~~~~l~~~~d~~~~ 37 (85)
+.++|...+ -+|++||.-.-.-.++..+++++.
T Consensus 29 l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~ 63 (144)
T PF00885_consen 29 LKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRY 63 (144)
T ss_dssp HHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTE
T ss_pred HHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCc
Confidence 456776555 778999999999999999988753
No 81
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=30.08 E-value=92 Score=18.30 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHhhC--CCCccccccCCHHHHHHHHHHHHhhC
Q psy14752 20 GGASKVKRLKTCLDAH--CIKFEDALEYDAHVLAGVLKLYLREL 61 (85)
Q Consensus 20 g~~~~~~~l~~~~d~~--~~~~~~~~~~~~~~va~~lK~flr~L 61 (85)
++...++++.+.|+.- ...-.+..+++..-+++-|-.|.|+|
T Consensus 39 W~~~~l~kVy~~F~eLVe~~~G~~LtdYnLRrIGSdLE~~iR~L 82 (108)
T PF10664_consen 39 WNEEALQKVYRKFDELVESYAGEDLTDYNLRRIGSDLEHFIRSL 82 (108)
T ss_pred cCHHHHHHHHHHHHHHHHhhcCCCchhhhHHHhccHHHHHHHHH
Confidence 4556666666666542 11112333578999999999999976
No 82
>KOG0930|consensus
Probab=29.45 E-value=48 Score=23.29 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=17.4
Q ss_pred eecCCCHHHHHHHHHHHhh
Q psy14752 16 FRVTGGASKVKRLKTCLDA 34 (85)
Q Consensus 16 fR~~g~~~~~~~l~~~~d~ 34 (85)
||+||...++.++.++|-+
T Consensus 151 FRLPGEaQKIdRmmEaFA~ 169 (395)
T KOG0930|consen 151 FRLPGEAQKIDRMMEAFAQ 169 (395)
T ss_pred hcCCchHHHHHHHHHHHHH
Confidence 8999999999999998865
No 83
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=29.38 E-value=1.3e+02 Score=20.21 Aligned_cols=57 Identities=21% Similarity=0.112 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCC---CCCCcccHHHHHHHhh
Q psy14752 21 GASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPE---PLLTYEGEPFHLLTCT 79 (85)
Q Consensus 21 ~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~---pLl~~~~~~~~~~~~~ 79 (85)
|.+.++++|..|-...+++... -.|++++.-+|+ .||.=.. -|=.++..+..+.++.
T Consensus 102 SAKvm~~ikavLgaTKiDLPVD-INDPYDlGLLLR-hLRHHSNLLAnIgdP~VreqVLsAMq 161 (238)
T PF02084_consen 102 SAKVMEDIKAVLGATKIDLPVD-INDPYDLGLLLR-HLRHHSNLLANIGDPEVREQVLSAMQ 161 (238)
T ss_pred cHHHHHHHHHHhcccccccccc-cCChhhHHHHHH-HHHHHHHHHhhcCCHHHHHHHHHHHh
Confidence 4577888999888777776543 357888876664 4443221 1122344555555544
No 84
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=28.03 E-value=92 Score=15.75 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHH
Q psy14752 21 GASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLK 55 (85)
Q Consensus 21 ~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK 55 (85)
...+|.+|++.+..|... .|...+|.-+-
T Consensus 26 r~~kV~~ik~~I~~G~Y~------vd~~~iA~~ml 54 (57)
T PF04316_consen 26 RAEKVAEIKAAIASGTYK------VDAEKIAEKML 54 (57)
T ss_dssp SHHHHHHHHHHHHTT-----------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCC------CCHHHHHHHHH
Confidence 457999999999998653 35667775543
No 85
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=27.88 E-value=47 Score=20.38 Aligned_cols=31 Identities=19% Similarity=0.021 Sum_probs=25.7
Q ss_pred HHHHHHHHhhCCCCCCCcccHHHHHHHhhhh
Q psy14752 51 AGVLKLYLRELPEPLLTYEGEPFHLLTCTEL 81 (85)
Q Consensus 51 a~~lK~flr~Lp~pLl~~~~~~~~~~~~~~~ 81 (85)
-+.|-.||+.+-+.-++++....|-+...+.
T Consensus 83 pGTLN~fL~~~~e~dl~Pevlk~fe~m~~~a 113 (134)
T PF08400_consen 83 PGTLNDFLTAPDEDDLRPEVLKRFEEMVAQA 113 (134)
T ss_pred CCcHHHHhhccccccCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999997765543
No 86
>PRK09689 prophage protein NinE; Provisional
Probab=27.44 E-value=30 Score=17.75 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=8.5
Q ss_pred CcceeecCCCH
Q psy14752 12 EEGLFRVTGGA 22 (85)
Q Consensus 12 ~eGifR~~g~~ 22 (85)
..||||+|...
T Consensus 10 ~~~ifrvparr 20 (56)
T PRK09689 10 NGHIYRVPNRR 20 (56)
T ss_pred hCceeeccccc
Confidence 46899999843
No 87
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=26.64 E-value=90 Score=22.39 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=34.1
Q ss_pred cceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 13 EGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 13 eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
+|-|.++|.. .++.+.+.++.+....... ..+.+++|+.+-.-+..+|++
T Consensus 330 ~~~~~v~G~~-~l~~l~~~l~~~~~~~~~~-~~~~~Tl~G~i~~~l~~iP~~ 379 (408)
T TIGR03520 330 DNNYVFEGKT-SLKDFYKILKLEEDMFDEV-KGEAETLAGFLLEISGGFPKK 379 (408)
T ss_pred CCeEEEEecc-CHHHHHHHhCCCccccCCc-CCCCccHHHHHHHHhCcCCCC
Confidence 6788898875 4667777775542111111 235789999999999999974
No 88
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=26.45 E-value=76 Score=15.51 Aligned_cols=16 Identities=44% Similarity=0.661 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhCCCCC
Q psy14752 50 LAGVLKLYLRELPEPL 65 (85)
Q Consensus 50 va~~lK~flr~Lp~pL 65 (85)
+...+|.||++-|-++
T Consensus 28 LP~~LKdyL~~y~~~i 43 (43)
T cd03735 28 LNPVLKDYLKSFPFQI 43 (43)
T ss_pred CCHHHHHHHHhCCCCC
Confidence 4578999999877553
No 89
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=26.19 E-value=1.3e+02 Score=18.57 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=25.1
Q ss_pred hhhhcCCCCc--ceeecCCCHHHHHHHHHHHhhCCC
Q psy14752 4 SKKKIGMDEE--GLFRVTGGASKVKRLKTCLDAHCI 37 (85)
Q Consensus 4 ~~~~~gl~~e--GifR~~g~~~~~~~l~~~~d~~~~ 37 (85)
+++++|...+ -++++||+-.---.++....+++.
T Consensus 32 ~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~ 67 (141)
T PLN02404 32 TFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKY 67 (141)
T ss_pred HHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCC
Confidence 3457777654 678999998888888887776653
No 90
>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function. One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].
Probab=25.78 E-value=1.6e+02 Score=20.51 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=38.4
Q ss_pred chhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCC
Q psy14752 3 ISKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67 (85)
Q Consensus 3 ~~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~ 67 (85)
+++|++|.- +|=..-+..+.+.++..- .++++.......++..+...|..|.+-|..|..|
T Consensus 22 ~DLeRRGFI---V~v~~~~~ed~~~ve~e~-~~dI~~L~ld~~~~~~~~~~l~~f~~~L~~p~~p 82 (299)
T PF08643_consen 22 LDLERRGFI---VYVTVSSAEDEKYVESED-RPDIRPLWLDDSDPSSIHASLSRFASLLSRPHVP 82 (299)
T ss_pred HHHhhCCeE---EEEEeCCHHHHHHHHhcc-CCCCCCcccCCCCCcchHHHHHHHHHHhcCCCCC
Confidence 356667653 366666777776665544 4444444332346777888888888888887444
No 91
>PRK04115 hypothetical protein; Provisional
Probab=25.77 E-value=69 Score=19.79 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=19.7
Q ss_pred CcceeecCCCHHHHHHHHHHHhhC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAH 35 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~ 35 (85)
-+|.|++.|.. +++.+...+..+
T Consensus 79 ~~g~~~VrG~~-evk~IskiLg~~ 101 (137)
T PRK04115 79 GEGAIVVRGKE-EVKVISKILGKE 101 (137)
T ss_pred CceEEEEcCHH-HHHHHHHHhCcc
Confidence 35999999998 999999998755
No 92
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=25.68 E-value=81 Score=15.21 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=11.2
Q ss_pred HHHHHHHHhhCCCC
Q psy14752 51 AGVLKLYLRELPEP 64 (85)
Q Consensus 51 a~~lK~flr~Lp~p 64 (85)
...+|.||++.|-+
T Consensus 27 P~~L~~yL~~y~~~ 40 (41)
T cd03734 27 PRRMADYLRQYPFQ 40 (41)
T ss_pred CHHHHHHHHHCCCC
Confidence 47899999988755
No 93
>KOG2564|consensus
Probab=25.49 E-value=56 Score=23.02 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCC
Q psy14752 45 YDAHVLAGVLKLYLRELPEPLLT 67 (85)
Q Consensus 45 ~~~~~va~~lK~flr~Lp~pLl~ 67 (85)
.-..++.+++|.+|.++|.+++-
T Consensus 128 T~~KD~~~~i~~~fge~~~~iil 150 (343)
T KOG2564|consen 128 TMSKDFGAVIKELFGELPPQIIL 150 (343)
T ss_pred HHHHHHHHHHHHHhccCCCceEE
Confidence 35788999999999999999763
No 94
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=24.88 E-value=1.5e+02 Score=18.94 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=45.9
Q ss_pred eeecCCCHHHHHHHHHHHhhCCCCccc-------------cccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHh
Q psy14752 15 LFRVTGGASKVKRLKTCLDAHCIKFED-------------ALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTC 78 (85)
Q Consensus 15 ifR~~g~~~~~~~l~~~~d~~~~~~~~-------------~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~ 78 (85)
--|=|.+..+++.+...+++|.....+ ..+..-...|.-+|..+.++|+-++--.....|.-.-
T Consensus 86 ~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~Sli~~~~~d~~~~lY~a~C~yl~p~w~~f~~RIvDVGf~g~Ww~L~ 162 (173)
T PF10171_consen 86 AIRNPTSDKHVQRLMRLRNQGRLRYLNLGLFSLIWEDDYDEDCSLYKAQCSYLKPRWTEFPERIVDVGFLGRWWVLE 162 (173)
T ss_pred hhcCchHHHHHHHHHHHhcCCceEEeeeeeEEEEEecCCCccccchhhhChhhhhHHHHhhhhhhhhhhhhHHHHHH
Confidence 346778899999999999998531111 1011234468899999999999999888888776433
No 95
>COG2901 Fis Factor for inversion stimulation Fis, transcriptional activator [Transcription / DNA replication, recombination, and repair]
Probab=24.59 E-value=1.5e+02 Score=17.06 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCcccHHHHHHH
Q psy14752 48 HVLAGVLKLYLRELPEPLLTYEGEPFHLLT 77 (85)
Q Consensus 48 ~~va~~lK~flr~Lp~pLl~~~~~~~~~~~ 77 (85)
..|...|+.||++|..-= +.++|+-.+..
T Consensus 29 dsV~~~L~~Y~~~L~G~~-v~~lY~mVL~e 57 (98)
T COG2901 29 DSVKQALKNYFADLNGQD-VNDLYEMVLAE 57 (98)
T ss_pred HHHHHHHHHHHHHcCCCC-hhhHHHHHHHH
Confidence 346788999999987644 44566655543
No 96
>cd03736 SOCS_SOCS2 SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS2 has recently been shown to regulate neuronal differentiation by controlling expression of a neurogenic transcription factor, Neurogenin-1. SOCS2 binds to GH receptors and inhibits the activation of STAT5b induced by GH. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=24.27 E-value=91 Score=14.94 Aligned_cols=15 Identities=40% Similarity=0.355 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhCCCC
Q psy14752 50 LAGVLKLYLRELPEP 64 (85)
Q Consensus 50 va~~lK~flr~Lp~p 64 (85)
+...+|.|+.+-|-+
T Consensus 26 LP~~Lk~yL~~y~~~ 40 (41)
T cd03736 26 LPTRLKDYLTEYTYH 40 (41)
T ss_pred CCHHHHHHHHHCCCC
Confidence 457899999988755
No 97
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=21.97 E-value=1.4e+02 Score=21.54 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=30.8
Q ss_pred eecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 16 FRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 16 fR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
|.+.|.. .++++.+.++.+- ..+.+.+++|+++...+..+|++
T Consensus 351 ~~v~G~~-~l~e~~~~l~~~~-----~~~~~~~Ti~G~v~~~lg~iP~~ 393 (429)
T COG1253 351 WLVDGRV-PLEELEELLGIDL-----DEEEDYDTIAGLVLSLLGRIPKV 393 (429)
T ss_pred EEEeccc-cHHHHHHHhCCCC-----cccCCcccHHHHHHHHhCcCCCC
Confidence 7777754 5667777765532 11347999999999999999954
No 98
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=21.89 E-value=1.1e+02 Score=20.83 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=33.0
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
..|-|.++|... +..+.+.++. ++. ..+..++|+++-.-+..+|++
T Consensus 208 ~~~~~~v~G~~~-l~dl~~~l~~---~l~---~~~~~Tl~G~i~~~l~~iP~~ 253 (292)
T PRK15094 208 SRHTWTVRALAS-IEDFNEAFGT---HFS---DEEVDTIGGLVMQAFGHLPAR 253 (292)
T ss_pred CCCeEEEEeccC-HHHHHHHhCC---CCC---CCCCccHHHHHHHHhCcCCCC
Confidence 357788888763 5666666644 222 236789999999999999974
No 99
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=21.82 E-value=86 Score=15.23 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=9.5
Q ss_pred HHHHHhhCCCCC
Q psy14752 54 LKLYLRELPEPL 65 (85)
Q Consensus 54 lK~flr~Lp~pL 65 (85)
||.||++-|-|+
T Consensus 31 Lk~yL~~Y~~~~ 42 (42)
T cd03737 31 IKEFLDQYDAPL 42 (42)
T ss_pred HHHHHHhCCCCC
Confidence 999999877553
No 100
>KOG4322|consensus
Probab=21.52 E-value=96 Score=23.05 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhhCCCCC
Q psy14752 46 DAHVLAGVLKLYLRELPEPL 65 (85)
Q Consensus 46 ~~~~va~~lK~flr~Lp~pL 65 (85)
.-+.+|+++|++++.+|.|=
T Consensus 457 eRn~~AslFrk~~~~le~pr 476 (482)
T KOG4322|consen 457 ERNLLASLFRKAWRYLELPR 476 (482)
T ss_pred HHHHHHHHHHHHHHhcCCcc
Confidence 35668999999999999874
No 101
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=21.43 E-value=52 Score=22.64 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=26.0
Q ss_pred HHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 51 AGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 51 a~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
.+-+|.|+++---|-+|.++.+.|..+..+
T Consensus 82 ~g~l~~yl~~~v~P~LP~~lr~~f~~al~~ 111 (276)
T PF08491_consen 82 NGELKEYLREVVAPQLPEELRPSFEKALED 111 (276)
T ss_pred chHHHHHHHHHHHhhchHHHHHHHHHHhcc
Confidence 468899999999999999999999987654
No 102
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=21.04 E-value=1.4e+02 Score=17.40 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=30.8
Q ss_pred ceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCc
Q psy14752 14 GLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTY 68 (85)
Q Consensus 14 GifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~ 68 (85)
|-|+..-+..+-+.+.+.++.-... .....++-.+||.|.+.-|++-+-.
T Consensus 60 Gyfk~~ls~~EK~~~~~~i~~yr~g-----~i~l~~~l~~L~~~~~ry~~~YL~~ 109 (117)
T PF08349_consen 60 GYFKKKLSSEEKQHFLDLIEDYREG-----KIPLSVPLTLLKHLARRYPDEYLLE 109 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHcC-----CccHHHHHHHHHHHHHHCCCHHHhh
Confidence 4455555555666666655542211 2356777889999999888765543
No 103
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=20.65 E-value=98 Score=13.92 Aligned_cols=15 Identities=40% Similarity=0.704 Sum_probs=9.1
Q ss_pred HHHHHhhCCCCCCCc
Q psy14752 54 LKLYLRELPEPLLTY 68 (85)
Q Consensus 54 lK~flr~Lp~pLl~~ 68 (85)
++.-||+|-+|+.-+
T Consensus 1 V~~~LR~lgePi~lF 15 (30)
T PF08799_consen 1 VRRRLRELGEPITLF 15 (30)
T ss_dssp HHHHHHHCT--SCET
T ss_pred ChHHHHhcCCChhhh
Confidence 356789999998643
No 104
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=20.50 E-value=3.8e+02 Score=23.69 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=41.7
Q ss_pred eeecCCCHHHHHHHHHHHhhC----CCCccccccCCHHHHHHHHHHHHhhCCCCCCCccc-HHHHHHHhhhhh
Q psy14752 15 LFRVTGGASKVKRLKTCLDAH----CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEG-EPFHLLTCTELT 82 (85)
Q Consensus 15 ifR~~g~~~~~~~l~~~~d~~----~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~-~~~~~~~~~~~~ 82 (85)
-||+||....|+++.+.|-.. +...... ...++.+|-.+---=.++-.|=+.... .+.|+...+.+.
T Consensus 705 ~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~-~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin 776 (1780)
T PLN03076 705 GFRLPGEAQKIDRIMEKFAERYCKCNPKAFSS-ADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGID 776 (1780)
T ss_pred hCCCCchHHHHHHHHHHHHHHHHHhCCCcCCC-HHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCC
Confidence 489999999999999987542 2121111 125777775555555666666665443 666766555443
No 105
>PF13309 HTH_22: HTH domain
Probab=20.42 E-value=36 Score=17.83 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=13.5
Q ss_pred CCCCcceeecCCCHHHHHH
Q psy14752 9 GMDEEGLFRVTGGASKVKR 27 (85)
Q Consensus 9 gl~~eGifR~~g~~~~~~~ 27 (85)
.|...|+|-+-|+...+.+
T Consensus 32 ~L~~~G~F~lKgav~~vA~ 50 (64)
T PF13309_consen 32 QLYEKGIFLLKGAVEYVAE 50 (64)
T ss_pred HHHHCCCcccCcHHHHHHH
Confidence 3567789998887666643
No 106
>PF11644 DUF3256: Protein of unknown function (DUF3256); InterPro: IPR021670 This family of proteins with unknown function appears to be restricted to Bacteroidales. ; PDB: 2P3P_B.
Probab=20.32 E-value=94 Score=20.33 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=12.5
Q ss_pred HHHHHHHHhhCCCCCCCcc
Q psy14752 51 AGVLKLYLRELPEPLLTYE 69 (85)
Q Consensus 51 a~~lK~flr~Lp~pLl~~~ 69 (85)
|--+|..|-++|+.++|+=
T Consensus 9 AQ~~~~~fv~MPDs~~P~L 27 (199)
T PF11644_consen 9 AQSMRDVFVNMPDSLIPYL 27 (199)
T ss_dssp --HHHHHHHH--CCCSTTS
T ss_pred cccHHHHHHhCCcchhhhc
Confidence 5668899999999888763
No 107
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=20.08 E-value=1.2e+02 Score=20.72 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=24.4
Q ss_pred hcCCCCcceeecCCCHHHHHHHHHHHhh
Q psy14752 7 KIGMDEEGLFRVTGGASKVKRLKTCLDA 34 (85)
Q Consensus 7 ~~gl~~eGifR~~g~~~~~~~l~~~~d~ 34 (85)
-+||+.+|+=|.--+.+.+..|++.+..
T Consensus 192 l~GlN~vGlkRrgf~~e~i~alr~ayk~ 219 (260)
T COG1043 192 LRGLNIVGLKRRGFSREEIHALRKAYKL 219 (260)
T ss_pred ccccceeeeeccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999987754
Done!