Query psy14752
Match_columns 85
No_of_seqs 145 out of 1009
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 19:44:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ovj_A Mgcracgap, RAC GTPase-a 99.9 1.8E-23 6.3E-28 133.5 8.6 75 4-79 27-102 (201)
2 3byi_A RHO GTPase activating p 99.9 3.8E-23 1.3E-27 133.0 7.9 76 4-79 45-121 (214)
3 2ee4_A RHO GTPase activating p 99.9 3.4E-23 1.2E-27 132.8 7.6 75 4-79 37-112 (209)
4 2osa_A N-chimaerin; RHO-GAP, G 99.9 5.8E-23 2E-27 131.1 8.4 76 4-79 34-111 (202)
5 3kuq_A RHO GTPase-activating p 99.9 9.9E-23 3.4E-27 132.3 8.3 76 4-80 46-121 (228)
6 1tx4_A P50-rhogap; complex (GT 99.9 8.1E-23 2.8E-27 130.1 7.3 74 4-79 36-110 (198)
7 3msx_B RHO GTPase-activating p 99.9 7.7E-23 2.6E-27 130.3 7.2 74 4-79 36-109 (201)
8 3fk2_A Glucocorticoid receptor 99.9 1.4E-22 4.9E-27 132.8 7.9 75 4-79 78-153 (246)
9 1pbw_A Rhogap domain, phosphat 99.9 2.3E-23 7.8E-28 134.3 3.8 75 4-80 35-109 (216)
10 3iug_A RHO/CDC42/RAC GTPase-ac 99.9 2.8E-22 9.6E-27 130.1 8.1 75 4-79 47-123 (229)
11 1f7c_A Rhogap protein; GTPase 99.9 1.8E-22 6.2E-27 131.2 7.1 76 4-79 47-126 (231)
12 1ow3_A RHO-GTPase-activating p 99.9 3.3E-22 1.1E-26 130.8 7.3 74 4-79 72-146 (242)
13 3eap_A RHO GTPase-activating p 99.8 4E-21 1.4E-25 127.5 7.6 69 8-79 96-164 (271)
14 3qis_A Inositol polyphosphate 99.8 5.9E-21 2E-25 131.1 7.7 74 4-80 209-282 (366)
15 3cxl_A N-chimerin; SH2, RHO-GA 99.8 7.3E-21 2.5E-25 133.6 8.1 76 4-79 295-372 (463)
16 2xs6_A Phosphatidylinositol 3- 99.8 1.7E-20 5.9E-25 121.0 4.0 67 4-80 50-116 (214)
17 1rp3_B Anti sigma factor FLGM; 51.5 27 0.00092 18.8 4.6 33 21-59 56-88 (88)
18 3llb_A Uncharacterized protein 46.4 8 0.00027 20.4 1.1 46 12-64 7-52 (83)
19 2p4p_A Hypothetical protein HD 40.8 13 0.00046 19.6 1.5 48 12-64 7-54 (86)
20 2r2z_A Hemolysin; APC85144, en 40.7 13 0.00044 19.9 1.4 45 13-64 15-59 (93)
21 2rk5_A Putative hemolysin; str 38.6 14 0.00048 19.5 1.4 45 13-64 7-51 (87)
22 2pls_A CBS domain protein; APC 38.4 17 0.00057 19.1 1.7 50 12-64 7-56 (86)
23 3lae_A UPF0053 protein HI0107; 36.4 9.1 0.00031 20.0 0.4 46 12-64 7-52 (81)
24 2p13_A CBS domain; alpha-beta 36.3 16 0.00055 19.4 1.4 48 12-64 13-60 (90)
25 2p3h_A Uncharacterized CBS dom 35.4 17 0.00057 20.2 1.4 46 12-64 10-55 (101)
26 2oai_A Hemolysin; PFAM03471, x 34.5 14 0.00049 19.9 1.0 49 12-64 16-64 (94)
27 1xsz_A Guanine nucleotide exch 32.9 86 0.0029 21.4 4.8 66 15-81 99-171 (356)
28 2pli_A Uncharacterized protein 31.7 17 0.00058 19.4 1.0 45 13-64 17-61 (91)
29 2nqw_A CBS domain protein; PFA 30.7 20 0.00069 19.2 1.2 51 12-64 13-63 (93)
30 1rvv_A Riboflavin synthase; tr 30.6 46 0.0016 19.9 2.9 34 4-37 37-72 (154)
31 1hqk_A 6,7-dimethyl-8-ribityll 30.1 41 0.0014 20.1 2.6 34 4-37 37-72 (154)
32 2b99_A Riboflavin synthase; lu 29.6 45 0.0015 20.1 2.7 34 4-37 24-58 (156)
33 3a8p_A T-lymphoma invasion and 29.2 2.6 8.9E-05 27.3 -3.1 23 6-28 224-246 (263)
34 3ded_A Probable hemolysin; str 25.5 34 0.0012 19.2 1.5 51 12-64 33-83 (113)
35 1kz1_A 6,7-dimethyl-8-ribityll 25.2 67 0.0023 19.3 2.9 33 5-37 43-78 (159)
36 2r09_A Cytohesin-3; autoinhibi 24.9 1.4E+02 0.0049 19.7 4.8 21 14-34 102-122 (347)
37 2o3g_A Putative protein; APC85 24.5 26 0.00089 18.6 0.9 48 12-64 15-62 (92)
38 1r8s_E ARNO; protein transport 23.9 53 0.0018 20.5 2.4 64 14-78 100-168 (203)
39 1ku1_A ARF guanine-nucleotide 22.9 53 0.0018 20.9 2.3 68 14-81 111-197 (230)
40 3ltl_A Brefeldin A-inhibited g 21.1 65 0.0022 20.3 2.4 63 15-77 107-175 (211)
41 1wii_A Hypothetical UPF0222 pr 20.7 47 0.0016 17.9 1.5 17 67-83 67-83 (85)
42 1wgo_A VPS10 domain-containing 20.7 30 0.001 20.1 0.6 14 7-20 87-100 (123)
43 1hjb_A Ccaat/enhancer binding 20.0 43 0.0015 18.2 1.2 17 51-67 66-82 (87)
44 1zrj_A E1B-55KDA-associated pr 20.0 88 0.003 15.0 2.2 10 5-14 22-31 (50)
No 1
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=133.48 Aligned_cols=75 Identities=29% Similarity=0.391 Sum_probs=64.8
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCcccccc-CCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALE-YDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~-~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
.++++|+++|||||+||+.+++++|++.+|++.... .... .|+|++|++||.|||+||+||+|.++|+.|++++.
T Consensus 27 ~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~-~~~~~~d~h~va~lLK~flreLpePLi~~~l~~~~~~~~~ 102 (201)
T 2ovj_A 27 EIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVP-LLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAE 102 (201)
T ss_dssp HHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCC-CGGGCCCHHHHHHHHHHHHHTSSSCTTCTTTHHHHHHHHH
T ss_pred HHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCc-cccccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999999999984211 1113 49999999999999999999999999999998664
No 2
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=99.89 E-value=3.8e-23 Score=132.97 Aligned_cols=76 Identities=30% Similarity=0.596 Sum_probs=65.8
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCC-CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~-~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
.++++|+++|||||+||+.+++++|++.+|++. .++......|+|+||++||.|||+||+||+|.++|+.|++++.
T Consensus 45 ~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~ 121 (214)
T 3byi_A 45 AVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIK 121 (214)
T ss_dssp HHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999999999984 4443322359999999999999999999999999999998654
No 3
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=99.89 E-value=3.4e-23 Score=132.77 Aligned_cols=75 Identities=28% Similarity=0.527 Sum_probs=65.4
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCC-CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~-~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
.++++|+++|||||++|+.+++++|++.+|++. .++... +.++|++|++||.|||+||+||+|.++|+.|++++.
T Consensus 37 ~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~-~~d~~~va~lLK~flreLPePLi~~~l~~~~~~~~~ 112 (209)
T 2ee4_A 37 FIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSM-EVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAK 112 (209)
T ss_dssp HHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHH-TCCHHHHHHHHHHHHHHSSSCSSCTTTHHHHHHHHS
T ss_pred HHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccC-CCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 356899999999999999999999999999985 333222 469999999999999999999999999999998654
No 4
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=99.89 E-value=5.8e-23 Score=131.12 Aligned_cols=76 Identities=30% Similarity=0.589 Sum_probs=65.6
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCC--CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC--IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~--~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
+++++|+++|||||+||+.+++++|++.+|++. .++......|+|++|++||.|||+||+||+|.++|+.|++++.
T Consensus 34 ~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~lLK~flreLpePLl~~~~~~~~~~~~~ 111 (202)
T 2osa_A 34 EIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAK 111 (202)
T ss_dssp HHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHTCSSCSSCTTTHHHHHHHHH
T ss_pred HHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 357899999999999999999999999999852 3443322369999999999999999999999999999998654
No 5
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.88 E-value=9.9e-23 Score=132.26 Aligned_cols=76 Identities=28% Similarity=0.347 Sum_probs=65.6
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
.++++|+.+|||||++|+.+++++|++.+|++.... +....++|+||++||.|||+||+||+|.++|+.|++++..
T Consensus 46 ~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~-~~~~~~~~~va~lLK~fLReLPePLl~~~l~~~~~~~~~~ 121 (228)
T 3kuq_A 46 YLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCV-NYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQY 121 (228)
T ss_dssp HHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCC-CCTTCCHHHHHHHHHHHHHHSSSCTTCSSHHHHHHHHHHH
T ss_pred HHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcC-CcccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999999999998764222 2224699999999999999999999999999999987653
No 6
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=99.88 E-value=8.1e-23 Score=130.10 Aligned_cols=74 Identities=28% Similarity=0.457 Sum_probs=64.5
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCC-CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~-~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
.++++|+++|||||++|+.++++++++.+|++. .++.. ..|+|++|++||.|||+||+||+|.++|+.|+++..
T Consensus 36 ~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~--~~d~~~~a~lLK~flreLpePLi~~~l~~~~~~~~~ 110 (198)
T 1tx4_A 36 YLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQ--YNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 110 (198)
T ss_dssp HHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGG--SSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGG
T ss_pred HHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccc--cccchHHHHHHHHHHHHCCCcCCCHHHHHHHHHHHc
Confidence 356899999999999999999999999999985 33321 258999999999999999999999999999997543
No 7
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=99.88 E-value=7.7e-23 Score=130.31 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=65.5
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
.++++|+.+|||||++|+.++++++++.+|+|... +....++|++|++||.|||+||+||+|.++|+.|++++.
T Consensus 36 ~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~--~~~~~d~~~va~lLK~flreLp~pLl~~~l~~~~~~~~~ 109 (201)
T 3msx_B 36 FLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEV--HLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMD 109 (201)
T ss_dssp HHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCC--CTTSSCHHHHHHHHHHHHHTSTTTTTTGGGHHHHHHGGG
T ss_pred HHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCC--CCCcccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999999999999998522 222469999999999999999999999999999998664
No 8
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=132.80 Aligned_cols=75 Identities=24% Similarity=0.506 Sum_probs=65.6
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCC-CccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~-~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
.++++|+++|||||++|+.+.+++|++.+|++.. ++.. .+.++|+||++||.|||+||+||+|.++|+.|+++..
T Consensus 78 ~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~-~~~dvh~va~lLK~fLReLPePLl~~~l~~~~~~~~~ 153 (246)
T 3fk2_A 78 YIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAE-KDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHK 153 (246)
T ss_dssp HHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGG-GTCCHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCccc-ccCcHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHhc
Confidence 4578999999999999999999999999999853 3332 2469999999999999999999999999999998654
No 9
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=99.87 E-value=2.3e-23 Score=134.29 Aligned_cols=75 Identities=27% Similarity=0.381 Sum_probs=65.0
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
.++++|+++|||||++|+.++ ++|++.+|++.... +...+|+|+||++||.|||+||+||+|.++|+.|+++...
T Consensus 35 ~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~-~~~~~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~ 109 (216)
T 1pbw_A 35 AIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSV-DLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPE 109 (216)
T ss_dssp HHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCC-CGGGBCHHHHHHHHHHHHHTSSSCSSCHHHHHHHHHHGGG
T ss_pred HHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCC-CccccCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999 99999999974222 2224699999999999999999999999999999987754
No 10
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=99.87 E-value=2.8e-22 Score=130.06 Aligned_cols=75 Identities=31% Similarity=0.550 Sum_probs=64.2
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCC-Ccccc-ccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDA-LEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~-~~~~~-~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
+++++|+ +|||||++|+.+++++|++.+|++.. ++... ...|+|+||++||.|||+||+||+|.++|+.|+++..
T Consensus 47 ~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~ 123 (229)
T 3iug_A 47 FIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVS 123 (229)
T ss_dssp HHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHT
T ss_pred HHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHH
Confidence 4678999 89999999999999999999999853 22221 1249999999999999999999999999999998654
No 11
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=99.87 E-value=1.8e-22 Score=131.24 Aligned_cols=76 Identities=29% Similarity=0.546 Sum_probs=62.7
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHH-HHhhCC---CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKT-CLDAHC---IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~-~~d~~~---~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
.++++|+.+|||||++|+.++++++++ .+|.+. .++......|+|+||++||.|||+||+||+|.++|+.|++++.
T Consensus 47 ~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~ 126 (231)
T 1f7c_A 47 AVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAK 126 (231)
T ss_dssp HHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999987 577763 3333222469999999999999999999999999999998654
No 12
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=99.87 E-value=3.3e-22 Score=130.79 Aligned_cols=74 Identities=28% Similarity=0.470 Sum_probs=64.5
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCC-CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~-~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
.++++|+++|||||++|+.+++++|++.+|+|. .++.. ..|+|++|++||.|||+||+||+|.++|+.|+++..
T Consensus 72 ~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~--~~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~ 146 (242)
T 1ow3_A 72 YLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQ--YNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 146 (242)
T ss_dssp HHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGG--SSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGG
T ss_pred HHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCccc--ccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHc
Confidence 356899999999999999999999999999985 33321 258999999999999999999999999999997543
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=99.84 E-value=4e-21 Score=127.46 Aligned_cols=69 Identities=32% Similarity=0.418 Sum_probs=52.4
Q ss_pred cCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 8 IGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 8 ~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
+|+.+|||||++|+.+.+++|++.+|++..... ..++|+||++||.|||+||+||+|.++|+.|++++.
T Consensus 96 ~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~---~~~~~~va~lLK~fLReLPePLl~~~ly~~~~~~~~ 164 (271)
T 3eap_A 96 DHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLS---SAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQ 164 (271)
T ss_dssp GGTTC--------CHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHSSSCSSCGGGHHHHHHHTT
T ss_pred hCCCCCCeeeeCCCHHHHHHHHHHHHcCCCCcc---cccHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHH
Confidence 489999999999999999999999999865432 469999999999999999999999999999998654
No 14
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.84 E-value=5.9e-21 Score=131.09 Aligned_cols=74 Identities=26% Similarity=0.387 Sum_probs=65.7
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
.++++|+.+|||||++|+.+++++|++.+|++..... ..++|++|++||.|||+||+||+|.++|+.|+++...
T Consensus 209 ~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~---~~dvh~va~lLK~fLReLPePLi~~~ly~~~~~~~~~ 282 (366)
T 3qis_A 209 HLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI---PGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYD 282 (366)
T ss_dssp HHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSC---CSCHHHHHHHHHHHHHHCSSCSSCHHHHHHHHHHTTC
T ss_pred HHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCcc---ccCHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHhhh
Confidence 4568999999999999999999999999999864322 3499999999999999999999999999999987653
No 15
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=99.83 E-value=7.3e-21 Score=133.62 Aligned_cols=76 Identities=30% Similarity=0.589 Sum_probs=65.6
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCC--CCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHC--IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCT 79 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~--~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~ 79 (85)
+++++|+.+|||||+||+.+.+++|++.+|++. .++......|+|+||++||.|||+||+||+|.++|+.|+++..
T Consensus 295 ~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~lLK~flReLPePLi~~~ly~~~~~~~~ 372 (463)
T 3cxl_A 295 EIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAK 372 (463)
T ss_dssp HHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHHCSSCSSCTTTHHHHHHHHH
T ss_pred HHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999999999853 3433222358999999999999999999999999999998765
No 16
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=99.80 E-value=1.7e-20 Score=121.00 Aligned_cols=67 Identities=28% Similarity=0.334 Sum_probs=54.8
Q ss_pred hhhhcCCCCcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCCCCCcccHHHHHHHhhh
Q psy14752 4 SKKKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHLLTCTE 80 (85)
Q Consensus 4 ~~~~~gl~~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~~~~~~~~~~~~~ 80 (85)
+++++|+++|||||++|+. +++ +.+..+ ....|+|+||++||.|||+||+||+|.++|+.|++++..
T Consensus 50 ~l~~~Gl~~eGIfR~sG~~-----lr~--~~~~~d---l~~~dvh~va~lLK~flReLPePLi~~~ly~~~i~~~~~ 116 (214)
T 2xs6_A 50 AIERTGLDSESHYRPELPA-----PRT--DWSLSD---VDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALRE 116 (214)
T ss_dssp HHHHHCTTCSGGGCCSCCC-----CCC--CCCCTT---GGGCCHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHC
T ss_pred HHHHhCCCCCCCeeeCHHH-----HHh--ccccCC---CccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc
Confidence 4678899999999999998 443 112222 224799999999999999999999999999999987764
No 17
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=51.54 E-value=27 Score=18.77 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHh
Q psy14752 21 GASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLR 59 (85)
Q Consensus 21 ~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr 59 (85)
...+|++|++.+..|... .|...+|.-+-.||+
T Consensus 56 r~~kV~~iK~aI~~GtY~------vd~~~iA~kml~~~~ 88 (88)
T 1rp3_B 56 LEKKVKELKEKIEKGEYE------VSDEKVVKGLIEFFT 88 (88)
T ss_dssp HHHHHHHHHHHHHTTCCC------CCHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCC------CCHHHHHHHHHHHhC
Confidence 457999999999998653 467888876666653
No 18
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=46.42 E-value=8 Score=20.39 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=33.4
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
.+|-|.++|... +..+.+.++.. +.. .+..++|+++-.-|..+|+.
T Consensus 7 ~dg~~~v~G~~~-l~dl~~~l~~~---l~~---~~~~Tl~G~i~~~lg~iP~~ 52 (83)
T 3llb_A 7 PSGDFIVKALTP-VDAFNDFFGSE---FSD---EEFDTVGGLVMSAFGHLPKR 52 (83)
T ss_dssp TTSCEEEETTCB-HHHHHHHHCCC---CCT---TTCSBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEEccCC-HHHHHHHhCCC---CCC---CCCcCHHHHHHHHhCcCCCC
Confidence 467899999864 66777777542 221 35679999999999999864
No 19
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=40.85 E-value=13 Score=19.56 Aligned_cols=48 Identities=19% Similarity=0.469 Sum_probs=33.7
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
.+|-|.++|.. .+..+.+.++... +.. +.+..++|+++-.-|..+|+.
T Consensus 7 ~dg~~~v~G~~-~l~dl~~~l~~~~--l~~--~~~~~Tl~G~i~~~lg~iP~~ 54 (86)
T 2p4p_A 7 NEDSWLIDGAT-PLEDVMRALNIHT--FPR--DENYETIGGFMMYMLRXIPXX 54 (86)
T ss_dssp CCSEEEEETTS-BHHHHHHHTTCCC--SCC--SCSSCBHHHHHHHHHCSCCCT
T ss_pred CCCEEEEEccC-CHHHHHHHhCCCC--CCc--CCCCccHHHHHHHHhCCCCCC
Confidence 46889999975 5667777775421 221 135679999999999998874
No 20
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=40.74 E-value=13 Score=19.89 Aligned_cols=45 Identities=18% Similarity=0.365 Sum_probs=32.7
Q ss_pred cceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 13 EGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 13 eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
+|-|.++|.. .+..+.+.+... +.. .+..++|+++-.-|..+|..
T Consensus 15 dg~~~v~G~~-~l~dl~~~l~~~---l~~---~~~~TlgG~i~~~lg~iP~~ 59 (93)
T 2r2z_A 15 DNEYLVQGRM-LIDEFNEVFETD---LHM---SDVDTMAGYLITALGTIPDE 59 (93)
T ss_dssp TTEEEEETTS-BHHHHHHHHTCC---CCC---TTCCBHHHHHHHHHSSCCCT
T ss_pred CCEEEEECCC-CHHHHHHHhCCC---CCC---CCcccHHHHHHHHhCCCCCC
Confidence 6889999975 566777777542 221 25678999999999999863
No 21
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=38.65 E-value=14 Score=19.52 Aligned_cols=45 Identities=13% Similarity=0.322 Sum_probs=32.3
Q ss_pred cceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 13 EGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 13 eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
+|-|.++|.. .+..+.+.++.. +.. .+..++|+++-.-|..+|..
T Consensus 7 dg~~~v~G~~-~l~dl~~~l~~~---l~~---~~~dTl~G~v~~~lg~iP~~ 51 (87)
T 2rk5_A 7 DNTYIVLGTM-TLNDFNEYFETD---LES---DNVDTIAGFYLTGVGTIPSQ 51 (87)
T ss_dssp TTEEEEETTS-BHHHHHHHHTCC---CCC---TTCCBHHHHHHHHHCSCCCS
T ss_pred CCEEEEEccC-CHHHHHHHhCCC---CCC---CCcccHHHHHHHHhCcCCCC
Confidence 5789999875 566777777542 221 35678999999999998863
No 22
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=38.41 E-value=17 Score=19.14 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=33.7
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
.+|-|.++|.. .+..+.+.++... +......+..++|+++-.-|..+|..
T Consensus 7 ~dg~~~v~G~~-~l~dl~~~l~~~~--l~~~~~~~~~Tl~G~i~~~lg~iP~~ 56 (86)
T 2pls_A 7 EDGSWLLDGLI-AVPELKDTLGLRA--VPEEEKGVYHTLSGMIMWLLGRLPQT 56 (86)
T ss_dssp TTSCEEEETTC-BHHHHHHHHTCSC--CTTTTSCSCCBHHHHHHHHHTSCCCT
T ss_pred CCCeEEEEccc-CHHHHHHHhCCCc--CCCccCCCcccHHHHHHHHhCCCCCC
Confidence 36789999875 5667777776531 22100035679999999999999863
No 23
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=36.41 E-value=9.1 Score=20.05 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=32.6
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
.+|-|.++|.. .+..+.+.++.. +.. .+..++|+++-.-|..+|+.
T Consensus 7 ~dg~~~v~g~~-~l~dl~~~l~~~---l~~---~~~~Tl~G~i~~~lg~iP~~ 52 (81)
T 3lae_A 7 SDGSMIIDGSA-NLRDLNKMFNWE---LDT---EDARTFNGLILEHLEEIPDE 52 (81)
T ss_dssp TTSCEEEETTC-BHHHHHHHHCCC---CCC---SSCSBHHHHHHHHCSSCCCT
T ss_pred CCCEEEEEeeC-CHHHHHHHhCCC---CCC---CCCccHHHHHHHHhCCCCCC
Confidence 36789999976 466777777543 221 35678999998888888863
No 24
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=36.27 E-value=16 Score=19.42 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=33.4
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
.+|-|.++|.. .+..+.+.++.. +... ..+..++|+++-.-|..+|..
T Consensus 13 ~dg~~~v~G~~-~l~dl~~~l~~~---l~~~-~~~~~TlgG~i~~~lg~iP~~ 60 (90)
T 2p13_A 13 ADGTWLMDGWI-SIRKASNLLEHD---LVDE-AERYSTLGGYLLWQFGYIPAA 60 (90)
T ss_dssp TTSCEEEETTS-BHHHHHHHHTSC---CCCT-TCCCCBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEECcC-CHHHHHHHHCCC---CCCc-CCCCccHHHHHHHHhCCCCCC
Confidence 36889999975 566777777542 2210 135679999999999999863
No 25
>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4
Probab=35.36 E-value=17 Score=20.15 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=33.3
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
.+|-|+++|.. .+..+.+.++.. +.+ .+..++++++-.-+..+|..
T Consensus 10 ~dg~~~v~G~~-~l~dl~~~lg~~---l~~---e~~dTlgGli~~~lg~iP~~ 55 (101)
T 2p3h_A 10 SPDKWLIDGDT-PLDEVERAIGYE---LPE---GDYETISGLLFDHANALLKT 55 (101)
T ss_dssp ETTEEEEETTC-BHHHHHHHHTSC---CCC---SSCCBHHHHHHHHHCSCCCT
T ss_pred CCCEEEEEccC-CHHHHHHHhCCC---CCC---CCCccHHHHHHHHhCCCCCC
Confidence 36889999975 566777777542 221 35679999999999999863
No 26
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=34.51 E-value=14 Score=19.87 Aligned_cols=49 Identities=31% Similarity=0.544 Sum_probs=32.0
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
.+|-|.++|.. .+..+.+.+... +......+..++|+++-.-|..+|..
T Consensus 16 ~dg~~~v~G~~-~l~dl~~~l~~~---l~~~~~~~~dTlgG~i~~~lg~iP~~ 64 (94)
T 2oai_A 16 EDGSFLIDGTL-PIEELREVLGAE---LPDGEENNYHTLAGMCISYFGRIPHV 64 (94)
T ss_dssp TTSCEEEETTC-BHHHHHHHHTC----------CCCSBHHHHHHHHHSSCCCT
T ss_pred CCCeEEEeccC-CHHHHHHHhCCC---CCcccCCCCccHHHHHHHHhCCCCCC
Confidence 36789999875 566777777542 22100035679999999999999863
No 27
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=32.90 E-value=86 Score=21.44 Aligned_cols=66 Identities=17% Similarity=0.056 Sum_probs=41.6
Q ss_pred eeecCCCHHHHHHHHHHHhhC----CCCccccccCCHHHHHHHHHHHHhhCCCCCCC---cccHHHHHHHhhhh
Q psy14752 15 LFRVTGGASKVKRLKTCLDAH----CIKFEDALEYDAHVLAGVLKLYLRELPEPLLT---YEGEPFHLLTCTEL 81 (85)
Q Consensus 15 ifR~~g~~~~~~~l~~~~d~~----~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~---~~~~~~~~~~~~~~ 81 (85)
-||+||....++++.+.|... +..... ....+|++|-.+-..=.+|-.|-+. .--.+.|+.....+
T Consensus 99 ~frLPGEaQ~IDRile~FA~rY~~~Np~~f~-s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFikN~rgi 171 (356)
T 1xsz_A 99 TFKLPGEAQKIDRLVQSFSGAYFQQNPDVVS-NADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGG 171 (356)
T ss_dssp TSCBCSSHHHHHHHHHHHHHHHHHHCTTTSS-SHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHHHTTTT
T ss_pred hCcCCchHHHHHHHHHHHHHHHHHhCCCccC-ChhHHHHHHHHHHHhcccccCccccccCCCCHHHHHHHhhcc
Confidence 489999999999999988653 211111 0124788876665666666666664 33566666654433
No 28
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=31.68 E-value=17 Score=19.39 Aligned_cols=45 Identities=16% Similarity=0.382 Sum_probs=32.5
Q ss_pred cceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 13 EGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 13 eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
+|-|.++|.. .+..+.+.+... +.. .+..++|+++-.-|..+|..
T Consensus 17 dg~~~v~G~~-~l~dl~~~l~~~---l~~---~~~dTlgG~i~~~lg~iP~~ 61 (91)
T 2pli_A 17 SERWRIHAAT-EIEDINTFFGTE---YSS---EEADTIGGLVIQELGHLPVR 61 (91)
T ss_dssp TTEEEEETTC-BHHHHHHHHCCC---CCC---SSCCBHHHHHHHHHSSCCCT
T ss_pred CCEEEEEcCC-CHHHHHHHhCCC---CCC---CCCccHHHHHHHHhCCCCCC
Confidence 6889999975 566777777542 221 35678999999999998863
No 29
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Probab=30.68 E-value=20 Score=19.15 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=32.9
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
.+|-|.++|.. .+..+.+.++. +.........+..++|+++-.-|..+|..
T Consensus 13 ~dg~~~v~G~~-~l~dl~~~l~~-~~~~~~~~~~~~~TlgG~i~~~lg~iP~~ 63 (93)
T 2nqw_A 13 GDGSYLFEGKT-SLSDVRHYLDL-PENAFGELGDEVDTLSGLFLEIKQELPHV 63 (93)
T ss_dssp TTSCEEEETTC-BHHHHHHHHTC-CTTTTHHHHTTCSBHHHHHHHHHCSCCCT
T ss_pred CCCEEEEEccc-CHHHHHHHhCC-CcccccccCCCcccHHHHHHHHhCcCCCC
Confidence 36889999875 56677777765 11000000035678999999999998863
No 30
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=30.64 E-value=46 Score=19.94 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=25.3
Q ss_pred hhhhcCCCCc--ceeecCCCHHHHHHHHHHHhhCCC
Q psy14752 4 SKKKIGMDEE--GLFRVTGGASKVKRLKTCLDAHCI 37 (85)
Q Consensus 4 ~~~~~gl~~e--GifR~~g~~~~~~~l~~~~d~~~~ 37 (85)
+++++|...+ -++++||.-.---..++...++..
T Consensus 37 ~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~y 72 (154)
T 1rvv_A 37 ALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKY 72 (154)
T ss_dssp HHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCC
T ss_pred HHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCC
Confidence 3567787655 678999998887777777777654
No 31
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=30.14 E-value=41 Score=20.15 Aligned_cols=34 Identities=24% Similarity=0.108 Sum_probs=25.3
Q ss_pred hhhhcCCCCc--ceeecCCCHHHHHHHHHHHhhCCC
Q psy14752 4 SKKKIGMDEE--GLFRVTGGASKVKRLKTCLDAHCI 37 (85)
Q Consensus 4 ~~~~~gl~~e--GifR~~g~~~~~~~l~~~~d~~~~ 37 (85)
+++++|...+ -++++||+-.---..++...++..
T Consensus 37 ~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~y 72 (154)
T 1hqk_A 37 CIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDI 72 (154)
T ss_dssp HHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTC
T ss_pred HHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCC
Confidence 3567787655 688999998877777777777653
No 32
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=29.63 E-value=45 Score=20.07 Aligned_cols=34 Identities=15% Similarity=-0.022 Sum_probs=24.6
Q ss_pred hhhhcCCCCc-ceeecCCCHHHHHHHHHHHhhCCC
Q psy14752 4 SKKKIGMDEE-GLFRVTGGASKVKRLKTCLDAHCI 37 (85)
Q Consensus 4 ~~~~~gl~~e-GifR~~g~~~~~~~l~~~~d~~~~ 37 (85)
+++++|...+ -++++||+-.-.-..++...++..
T Consensus 24 ~L~~~G~~~~i~~~~VPGafEiP~aak~la~~~~y 58 (156)
T 2b99_A 24 KLKELSPNIKIIRKTVPGIKDLPVACKKLLEEEGC 58 (156)
T ss_dssp HHHHHCTTCEEEEEEESSGGGHHHHHHHHHHHSCC
T ss_pred HHHHcCCCCeEEEEECCcHHHHHHHHHHHHhcCCC
Confidence 3567787665 228999998888777877777653
No 33
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=29.20 E-value=2.6 Score=27.30 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=16.7
Q ss_pred hhcCCCCcceeecCCCHHHHHHH
Q psy14752 6 KKIGMDEEGLFRVTGGASKVKRL 28 (85)
Q Consensus 6 ~~~gl~~eGifR~~g~~~~~~~l 28 (85)
...+|...||||++|....|...
T Consensus 224 ~~~~l~~~g~~~v~~~~~~v~~~ 246 (263)
T 3a8p_A 224 SKLALGRLGVLSVSSFHALVCSR 246 (263)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHT
T ss_pred ccccccccEEEEeccceeeeeec
Confidence 35577788999999987755433
No 34
>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4
Probab=25.49 E-value=34 Score=19.16 Aligned_cols=51 Identities=24% Similarity=0.414 Sum_probs=33.5
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
.+|-|.++|.. .+..+.+.+.... .+......+..++|+++-.-|..+|..
T Consensus 33 ~dg~~~v~G~~-~l~dl~e~lg~~~-~l~~~~~~~~dTlgGlil~~lg~iP~~ 83 (113)
T 3ded_A 33 EDGSWLVDGMV-SLDRFREFFELEA-PLPGEAGGNIHTLAGVMLYQLGRVPSV 83 (113)
T ss_dssp TTSCEEEETTC-BHHHHHHHTTCCS-CCTTGGGTCCCBHHHHHHHHHCSSCCT
T ss_pred cCCEEEEeccc-CHHHHHHHhCCCc-cCCcccCCCCccHHHHHHHHhCCCCCC
Confidence 46789999976 4667777775431 022100135678999999999999864
No 35
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=25.21 E-value=67 Score=19.34 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=24.2
Q ss_pred hhh-cCCCCcc--eeecCCCHHHHHHHHHHHhhCCC
Q psy14752 5 KKK-IGMDEEG--LFRVTGGASKVKRLKTCLDAHCI 37 (85)
Q Consensus 5 ~~~-~gl~~eG--ifR~~g~~~~~~~l~~~~d~~~~ 37 (85)
+++ +|...+. ++++||.-.---..++...++..
T Consensus 43 l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~y 78 (159)
T 1kz1_A 43 MIEKHDVKLENIDIESVPGSWELPQGIRASIARNTY 78 (159)
T ss_dssp HHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCC
T ss_pred HHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCC
Confidence 445 6776554 88999998877777777777654
No 36
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=24.92 E-value=1.4e+02 Score=19.71 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.0
Q ss_pred ceeecCCCHHHHHHHHHHHhh
Q psy14752 14 GLFRVTGGASKVKRLKTCLDA 34 (85)
Q Consensus 14 GifR~~g~~~~~~~l~~~~d~ 34 (85)
.-||+||....++.+.+.|..
T Consensus 102 ~~f~lpgE~q~idril~~Fa~ 122 (347)
T 2r09_A 102 WSFRLPGEAQKIDRMMEAFAS 122 (347)
T ss_dssp TSCCCCSSHHHHHHHHHHHHH
T ss_pred HhCcCCCchHHHHHHHHHHHH
Confidence 348999999999999998854
No 37
>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=24.55 E-value=26 Score=18.63 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=29.6
Q ss_pred CcceeecCCCHHHHHHHHHHHhhCCCCccccccCCHHHHHHHHHHHHhhCCCC
Q psy14752 12 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64 (85)
Q Consensus 12 ~eGifR~~g~~~~~~~l~~~~d~~~~~~~~~~~~~~~~va~~lK~flr~Lp~p 64 (85)
.+|-|.++|.. .+..+.+.+.... +.. ..+..++|+++-.-|..+|..
T Consensus 15 ~dg~~~v~G~~-~l~dl~~~l~~~~--l~~--~~~~~Tl~G~i~~~lg~iP~~ 62 (92)
T 2o3g_A 15 PDESLTVEGAL-EYVELAPQLNLPQ--QEE--DADFHTVAGLIMEELQTIPDV 62 (92)
T ss_dssp --CCSEEETTC-BHHHHTTTTTCCC--CCT--TCSCSBHHHHHHHHHTSCCCT
T ss_pred CCCEEEEEccC-CHHHHHHHhCCCC--CCc--CCCcccHHHHHHHHhCCCCCC
Confidence 36788888865 3445544443310 221 135679999999999999863
No 38
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=23.91 E-value=53 Score=20.52 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=34.9
Q ss_pred ceeecCCCHHHHHHHHHHHhhC----CCCccccccCCHHHHHHHHHHHHhhCCCCCCCc-ccHHHHHHHh
Q psy14752 14 GLFRVTGGASKVKRLKTCLDAH----CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTY-EGEPFHLLTC 78 (85)
Q Consensus 14 GifR~~g~~~~~~~l~~~~d~~----~~~~~~~~~~~~~~va~~lK~flr~Lp~pLl~~-~~~~~~~~~~ 78 (85)
.-||+||....++++.+.|... +...... ...+|++|-.+-..=.+|-.|=+.. -..+.|+...
T Consensus 100 ~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s-~D~~~vLaySiImLNTDlHn~~vk~kMt~~~Fi~n~ 168 (203)
T 1r8s_E 100 WSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQS-TDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMN 168 (203)
T ss_dssp HSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSC-HHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHT
T ss_pred HhccCCCchHHHHHHHHHHHHHHHHhCCcccCC-cchHHHHHHHHHHhcccccCcccccccCHHHHHHHh
Confidence 3489999999999999988653 2221110 1247777755433333433333321 2344454433
No 39
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=22.95 E-value=53 Score=20.94 Aligned_cols=68 Identities=10% Similarity=0.051 Sum_probs=40.6
Q ss_pred ceeecCCCHHHHHHHHHHHhhC----CCCc------------cc-ccc-CCHHHHHHHHHHHHhhCCCCCCCc-ccHHHH
Q psy14752 14 GLFRVTGGASKVKRLKTCLDAH----CIKF------------ED-ALE-YDAHVLAGVLKLYLRELPEPLLTY-EGEPFH 74 (85)
Q Consensus 14 GifR~~g~~~~~~~l~~~~d~~----~~~~------------~~-~~~-~~~~~va~~lK~flr~Lp~pLl~~-~~~~~~ 74 (85)
.-||+||....|+++.+.|... +... .. ..+ ..++++|-.+-..=.+|-.|-+.. -..+.|
T Consensus 111 ~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiImLNTDlHnp~vk~kMT~~~F 190 (230)
T 1ku1_A 111 TKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDY 190 (230)
T ss_dssp TTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHHHHHHTCTTCSSCCCHHHH
T ss_pred HhCcCCchHHHHHHHHHHHHHHHHHhCCCCccccccccccccccccCCchHHHHHHHHHHHHhhhhccccccCCCCHHHH
Confidence 3489999999999999988652 1100 00 001 247787766655556666665533 245666
Q ss_pred HHHhhhh
Q psy14752 75 LLTCTEL 81 (85)
Q Consensus 75 ~~~~~~~ 81 (85)
+...+.+
T Consensus 191 ikN~rg~ 197 (230)
T 1ku1_A 191 SGNLKGC 197 (230)
T ss_dssp HHHTTTC
T ss_pred HHHhhcc
Confidence 6544433
No 40
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=21.10 E-value=65 Score=20.27 Aligned_cols=63 Identities=22% Similarity=0.162 Sum_probs=34.5
Q ss_pred eeecCCCHHHHHHHHHHHhhC----CCCcccc-ccCCHHHHHHHHHHHHhhCCCCCCCcc-cHHHHHHH
Q psy14752 15 LFRVTGGASKVKRLKTCLDAH----CIKFEDA-LEYDAHVLAGVLKLYLRELPEPLLTYE-GEPFHLLT 77 (85)
Q Consensus 15 ifR~~g~~~~~~~l~~~~d~~----~~~~~~~-~~~~~~~va~~lK~flr~Lp~pLl~~~-~~~~~~~~ 77 (85)
-||+||....++++.+.|... +...... ....++++|-.+-..=.+|-.|=+... ..+.|+..
T Consensus 107 ~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt~~~Fi~n 175 (211)
T 3ltl_A 107 GFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKM 175 (211)
T ss_dssp SSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCCHHHHHHH
T ss_pred hCcCCCchhHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHhhhhcCccccCCCCHHHHHHH
Confidence 489999999999999988653 1110001 112477777554434344444444222 24444443
No 41
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=20.74 E-value=47 Score=17.90 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=13.2
Q ss_pred CcccHHHHHHHhhhhhc
Q psy14752 67 TYEGEPFHLLTCTELTN 83 (85)
Q Consensus 67 ~~~~~~~~~~~~~~~~~ 83 (85)
|-+.|..|++++.+...
T Consensus 67 piDVYs~WiDac~~~~~ 83 (85)
T 1wii_A 67 PVDVYSDWIDACESGPS 83 (85)
T ss_dssp TTHHHHHHHHHHHHCCC
T ss_pred chhhHHHHHHHHHHHhh
Confidence 45899999999877653
No 42
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease, PKD, structural genomics, KIAA1329 protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=20.67 E-value=30 Score=20.13 Aligned_cols=14 Identities=21% Similarity=0.537 Sum_probs=10.9
Q ss_pred hcCCCCcceeecCC
Q psy14752 7 KIGMDEEGLFRVTG 20 (85)
Q Consensus 7 ~~gl~~eGifR~~g 20 (85)
+|-.+..||||++.
T Consensus 87 ~H~Y~~~GiyrVt~ 100 (123)
T 1wgo_A 87 RHRYESPGIYRVSV 100 (123)
T ss_dssp EECCSSCSCEEEEE
T ss_pred eEEEeCCCEEEEEE
Confidence 45667889999975
No 43
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.02 E-value=43 Score=18.17 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=8.3
Q ss_pred HHHHHHHHhhCCCCCCC
Q psy14752 51 AGVLKLYLRELPEPLLT 67 (85)
Q Consensus 51 a~~lK~flr~Lp~pLl~ 67 (85)
...|+.+|.++|++++.
T Consensus 66 ~~~Lr~ll~~~p~~~~~ 82 (87)
T 1hjb_A 66 LSTLRNLFKQLPEPLLA 82 (87)
T ss_dssp HHHHHHHHHC-------
T ss_pred HHHHHHHHHHCcHHHhc
Confidence 45788999999998764
No 44
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.00 E-value=88 Score=15.01 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=4.8
Q ss_pred hhhcCCCCcc
Q psy14752 5 KKKIGMDEEG 14 (85)
Q Consensus 5 ~~~~gl~~eG 14 (85)
...+||.+.|
T Consensus 22 Lk~RgL~~~G 31 (50)
T 1zrj_A 22 LQRRGLDTRG 31 (50)
T ss_dssp HHHTTCCCCS
T ss_pred HHHcCCCCCC
Confidence 3455554444
Done!