RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14752
(85 letters)
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
GTPase-activating protein for RHO family members,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2ee5_A
Length = 209
Score = 90.4 bits (225), Expect = 1e-24
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTY 68
G+ EGL+RV+G + ++ D ++E + +AG LK + +LP+PL+ Y
Sbjct: 42 GLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPY 101
Query: 69 E 69
Sbjct: 102 S 102
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH
domain, signaling protein; 2.40A {Gallus gallus} SCOP:
a.116.1.1
Length = 231
Score = 89.7 bits (223), Expect = 4e-24
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLD----AHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64
G++E+GL+R+ G S+V++L + L A + E E++ + LK YLR LP P
Sbjct: 52 GINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGP 111
Query: 65 LLTYE 69
L+ Y+
Sbjct: 112 LMMYQ 116
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.80A {Homo sapiens}
Length = 202
Score = 88.4 bits (220), Expect = 6e-24
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLD--AHCIKFEDALEYDAHVLAGVLKLYLRELPEPLL 66
G++ EGL+RV+G + ++ +K D + D +++ G LKLY R+LP PL+
Sbjct: 39 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 98
Query: 67 TYE 69
TY+
Sbjct: 99 TYD 101
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural
genomics consortium, signaling protein; 2.25A {Homo
sapiens}
Length = 214
Score = 88.1 bits (219), Expect = 1e-23
Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDA-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
G+D +G++RV+G + +++L+ ++ + +D+ D HV+ G LK++ RELPEPL
Sbjct: 50 GLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFP 109
Query: 68 YE 69
Y
Sbjct: 110 YS 111
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein,
structural genomics, structural genomics consortium,
SGC; HET: 7PE; 1.49A {Homo sapiens}
Length = 201
Score = 86.9 bits (216), Expect = 3e-23
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTY 68
G+ E GL+R++G VK LK + D H + +LK +LR L EPLLT+
Sbjct: 32 GLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTF 91
Query: 69 E 69
Sbjct: 92 R 92
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium,
GTPase activation, SGC, alternative splicing, cytoplasm,
phosphoprotein; 2.30A {Homo sapiens}
Length = 228
Score = 87.4 bits (217), Expect = 3e-23
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTY 68
+D+ GLFR +G S+++ L+ + A+ +A +LK Y R+LPEPL+T
Sbjct: 51 CLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYE-GQSAYDVADMLKQYFRDLPEPLMTN 109
Query: 69 E 69
+
Sbjct: 110 K 110
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 87.1 bits (216), Expect = 6e-23
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTY 68
G+ EG++RV+G S+++ L+ D ++ + +AG +K + ELP+PL+ Y
Sbjct: 83 GLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPY 142
Query: 69 E 69
Sbjct: 143 N 143
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase,
transition state, GAP; HET: GDP; 1.65A {Homo sapiens}
SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Length = 198
Score = 84.6 bits (210), Expect = 2e-22
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDA-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
+ EG+FR + V+ ++ + + F+ H+ A +LK +LRELPEPLLT
Sbjct: 41 ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQ--YNALHLPAVILKTFLRELPEPLLT 98
Query: 68 YE 69
++
Sbjct: 99 FD 100
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition
state, gene regulation/signaling protein complex; HET:
GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A
2ngr_B*
Length = 242
Score = 85.1 bits (211), Expect = 3e-22
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDA-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
+ EG+FR + V+ ++ + + F+ + H+ A +LK +LRELPEPLLT
Sbjct: 77 ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQ--YNELHLPAVILKTFLRELPEPLLT 134
Query: 68 YE 69
++
Sbjct: 135 FD 136
>3msx_B RHO GTPase-activating protein 20; protein-proten complex,
transition state, protein BI; HET: GDP; 1.65A {Homo
sapiens}
Length = 201
Score = 83.8 bits (208), Expect = 4e-22
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDA-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT 67
G +G+FR + + LK L++ + + V+A VLK +LR +P + +
Sbjct: 41 GPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDC---ESIFVIASVLKDFLRNIPGSIFS 97
Query: 68 YE 69
+
Sbjct: 98 SD 99
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 83.6 bits (207), Expect = 2e-21
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTY 68
+ EGLFR +G ++K LK +D +AG+LK + RELPEP+L
Sbjct: 97 HIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSS---APPCDIAGLLKQFFRELPEPILPA 153
Query: 69 E 69
+
Sbjct: 154 D 154
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics
consortium (SGC), GAP, alternative splicing, cell
junction, cell membrane; 1.77A {Homo sapiens}
Length = 229
Score = 82.8 bits (205), Expect = 2e-21
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKF--EDALEYDAHVLAGVLKLYLRELPEPLL 66
G+ +G++R++G AS ++RL+ D+ + ++ D H + + KLY RELP PLL
Sbjct: 52 GI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLL 110
Query: 67 TYE 69
TY+
Sbjct: 111 TYQ 113
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 84.9 bits (210), Expect = 2e-21
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLD--AHCIKFEDALEYDAHVLAGVLKLYLRELPEPLL 66
G++ EGL+RV+G + ++ +K D + D +++ G LKLY R+LP PL+
Sbjct: 300 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 359
Query: 67 TYE 69
TY+
Sbjct: 360 TYD 362
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase,
tpase activating protein, CDC42, phosphoinositide
3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP:
a.116.1.1
Length = 216
Score = 82.0 bits (203), Expect = 3e-21
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTY 68
G++ L+R +S + L+ LD + D HVLA K YL +LP P++
Sbjct: 40 GLECSTLYRT-QSSSNLAELRQLLDCDTPSVDLE-MIDVHVLADAFKRYLLDLPNPVIPA 97
Query: 69 E 69
Sbjct: 98 A 98
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural
genomics consortium, SGC, transferase; 2.09A {Homo
sapiens}
Length = 214
Score = 75.6 bits (186), Expect = 7e-19
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTY 68
G+D E +R A + D ++D LA +K +L LP PL+T
Sbjct: 55 GLDSESHYRPELPAPRTD----------WSLSDVDQWDTAALADGIKSFLLALPAPLVTP 104
Query: 69 E 69
E
Sbjct: 105 E 105
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
RAB gtpases, APPL1, endocytic PATH golgi complex,
hydrolase-protein binding complex; 2.30A {Homo sapiens}
PDB: 2qv2_A
Length = 366
Score = 75.4 bits (185), Expect = 4e-18
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 9 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTY 68
+E LF+ G +++++ CLD + + H +A L ++L LPEP++ Y
Sbjct: 214 ACHQEDLFQTPGMQEELQQIIDCLDTSI---PETIPGSNHSVAEALLIFLEALPEPVICY 270
Query: 69 E 69
E
Sbjct: 271 E 271
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.29
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 9/26 (34%)
Query: 50 LAGVLKLYLRELPE--PLL----TYE 69
L LKLY + P L T E
Sbjct: 25 LQASLKLY---ADDSAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 1.6
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 18 VTGGASKVKRLKTCLDAHCIKF--EDALEYDAHVLAGVLKLYLRELPEPLLTYEGEPFHL 75
VT S LD H + ++ +L L ++LP +LT P L
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKS----LLLKYLDCRPQDLPREVLT--TNPRRL 330
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 25.4 bits (56), Expect = 2.8
Identities = 8/27 (29%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 46 DAHVLAGVLKLYLRELPEPLL-TYEGE 71
D L +L RE LL Y
Sbjct: 305 DVSTLYRLLLKAYREGRGELLERYSAI 331
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 3.5
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 23/96 (23%)
Query: 6 KKIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALE--YDAHVLAGVLKLY----LR 59
K +G L GA+ + + A I D+ E + + A + + +R
Sbjct: 254 KLLGFTPGELRSYLKGATGH--SQGLVTAVAIAETDSWESFFVSVRKA--ITVLFFIGVR 309
Query: 60 --------ELPEPLLTY-----EGEPFHLLTCTELT 82
LP +L EG P +L+ + LT
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase
RV2981C, structural genomics, TB structural GENO
consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Length = 373
Score = 24.9 bits (55), Expect = 4.0
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 4/30 (13%)
Query: 21 GASKVKRLKTCLDAHCIKFEDALEYDAHVL 50
G S+V A A +D V+
Sbjct: 203 GVSRVSSWDQLPAA----VARARRHDPKVI 228
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 24.0 bits (53), Expect = 7.2
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 12/59 (20%)
Query: 7 KIGMDEEGLFRVTGGASKVKRL--KTCLDAHCIKFEDALEYDAHVLA--GVLKLYLREL 61
++ EG++ V +V+R + D +A Y V GV LR
Sbjct: 345 EVVPVAEGVYEVRA--PEVERYLARIKGDL-----MEAAGYLQEVFRRQGVEAA-LRAK 395
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.407
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,316,723
Number of extensions: 66937
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 24
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)