RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14752
         (85 letters)



>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 196

 Score = 63.6 bits (154), Expect = 7e-15
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 9  GMDEEGLFRVTGGASKVKRLKTCL--DAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLL 66
          G+  EGL+RV+G    ++ +K     D         +  D +++ G LKLY R+LP P++
Sbjct: 33 GLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVI 92

Query: 67 TYE 69
          TY+
Sbjct: 93 TYD 95


>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId:
          9031]}
          Length = 191

 Score = 61.3 bits (148), Expect = 6e-14
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 9  GMDEEGLFRVTGGASKVKRLKTCLD----AHCIKFEDALEYDAHVLAGVLKLYLRELPEP 64
          G++E+GL+R+ G  S+V++L + L     A   + E   E++   +   LK YLR LP P
Sbjct: 22 GINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGP 81

Query: 65 LLTYE 69
          L+ Y+
Sbjct: 82 LMMYQ 86


>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 184

 Score = 59.3 bits (143), Expect = 3e-13
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 9   GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTY 68
           G++   L+R    +S +  L+  LD      +     D HVLA   K YL +LP P++  
Sbjct: 29  GLECSTLYRT-QSSSNLAELRQLLDCDTPSVDLE-MIDVHVLADAFKRYLLDLPNPVIPA 86

Query: 69  EGEPFHLLTCTELTN 83
                 +    E+ +
Sbjct: 87  AVYSEMISLAPEVQS 101


>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 196

 Score = 52.8 bits (126), Expect = 1e-10
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 9  GMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTY 68
           +  EG+FR +     V+ ++   +       D      H+ A +LK +LRELPEPLLT+
Sbjct: 39 ALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQ-YNALHLPAVILKTFLRELPEPLLTF 97

Query: 69 E 69
          +
Sbjct: 98 D 98


>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 177

 Score = 25.1 bits (55), Expect = 0.97
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 47 AHVLAGVLKLYLRELPEPLLTYEGEPFHL 75
          +  LA  ++  L  L E  + ++G   ++
Sbjct: 10 SIWLARKIRSDLTALTESYVKHQGLNKNI 38


>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal
          domain {Thermus thermophilus [TaxId: 274]}
          Length = 76

 Score = 22.2 bits (48), Expect = 7.1
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 12/59 (20%)

Query: 7  KIGMDEEGLFRVTGGASKVKRL--KTCLDAHCIKFEDALEYDAHVLA--GVLKLYLREL 61
          ++    EG++ V     +V+R   +   D       +A  Y   V    GV    LR  
Sbjct: 5  EVVPVAEGVYEVRA--PEVERYLARIKGDL-----MEAAGYLQEVFRRQGVEAA-LRAK 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0701    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 318,600
Number of extensions: 12559
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 7
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.9 bits)