Query psy14754
Match_columns 192
No_of_seqs 154 out of 1697
Neff 11.0
Searched_HMMs 29240
Date Fri Aug 16 19:47:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 7.4E-39 2.5E-43 223.9 17.4 164 3-180 11-176 (216)
2 1mh1_A RAC1; GTP-binding, GTPa 100.0 5.2E-37 1.8E-41 210.3 20.6 183 3-185 3-185 (186)
3 2gco_A H9, RHO-related GTP-bin 100.0 1.5E-36 5.1E-41 210.8 21.5 180 1-180 21-200 (201)
4 2j1l_A RHO-related GTP-binding 100.0 8.3E-37 2.9E-41 214.0 19.4 182 3-184 32-213 (214)
5 2fv8_A H6, RHO-related GTP-bin 100.0 2.2E-36 7.7E-41 210.8 21.4 182 1-182 21-202 (207)
6 2q3h_A RAS homolog gene family 100.0 2.2E-36 7.5E-41 209.9 20.9 182 3-184 18-199 (201)
7 2atx_A Small GTP binding prote 100.0 2.1E-36 7.3E-41 208.8 20.5 177 4-180 17-193 (194)
8 1m7b_A RND3/RHOE small GTP-bin 100.0 2E-36 6.9E-41 207.4 19.1 178 3-180 5-183 (184)
9 3reg_A RHO-like small GTPase; 100.0 6E-36 2E-40 206.6 21.4 172 3-184 21-192 (194)
10 3q3j_B RHO-related GTP-binding 100.0 2.1E-36 7.3E-41 211.9 19.2 182 3-184 25-207 (214)
11 4gzl_A RAS-related C3 botulinu 100.0 5E-36 1.7E-40 208.6 19.3 176 3-178 28-203 (204)
12 1gwn_A RHO-related GTP-binding 100.0 5.3E-36 1.8E-40 208.6 18.8 178 3-180 26-204 (205)
13 2j0v_A RAC-like GTP-binding pr 100.0 1.4E-35 4.7E-40 207.5 19.3 176 4-183 8-183 (212)
14 3oes_A GTPase rhebl1; small GT 100.0 1E-35 3.4E-40 206.6 17.5 176 3-192 22-201 (201)
15 3bwd_D RAC-like GTP-binding pr 100.0 1.6E-35 5.4E-40 202.3 15.2 176 3-180 6-181 (182)
16 4dsu_A GTPase KRAS, isoform 2B 100.0 7.5E-35 2.6E-39 200.0 18.6 164 3-181 2-167 (189)
17 3t5g_A GTP-binding protein RHE 100.0 2.5E-34 8.5E-39 196.3 20.5 168 3-184 4-173 (181)
18 3ihw_A Centg3; RAS, centaurin, 100.0 1.6E-34 5.6E-39 197.9 19.2 165 2-183 17-183 (184)
19 1c1y_A RAS-related protein RAP 100.0 1.2E-34 3.9E-39 195.3 17.7 163 4-179 2-166 (167)
20 3tw8_B RAS-related protein RAB 100.0 2.5E-34 8.6E-39 196.0 19.5 169 3-185 7-176 (181)
21 2fn4_A P23, RAS-related protei 100.0 2.2E-34 7.6E-39 196.3 19.0 171 2-186 6-178 (181)
22 2nzj_A GTP-binding protein REM 100.0 3.5E-34 1.2E-38 194.4 18.3 168 3-184 2-173 (175)
23 3c5c_A RAS-like protein 12; GD 100.0 4.1E-34 1.4E-38 196.4 18.0 163 3-180 19-186 (187)
24 1r2q_A RAS-related protein RAB 100.0 4.9E-34 1.7E-38 192.7 17.9 165 1-179 2-168 (170)
25 1u8z_A RAS-related protein RAL 100.0 2.7E-34 9.2E-39 193.5 16.5 164 3-180 2-167 (168)
26 2gf9_A RAS-related protein RAB 100.0 2.7E-33 9.1E-38 192.6 21.6 164 4-181 21-186 (189)
27 3kkq_A RAS-related protein M-R 100.0 1E-33 3.5E-38 193.6 19.3 164 3-180 16-182 (183)
28 1z2a_A RAS-related protein RAB 100.0 7.4E-34 2.5E-38 191.5 18.2 164 3-180 3-167 (168)
29 2fu5_C RAS-related protein RAB 100.0 4.6E-34 1.6E-38 195.3 17.2 167 4-184 7-175 (183)
30 2a5j_A RAS-related protein RAB 100.0 1.2E-33 4.1E-38 194.7 19.3 167 3-183 19-187 (191)
31 2hup_A RAS-related protein RAB 100.0 6.1E-34 2.1E-38 197.7 17.6 168 3-183 27-196 (201)
32 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.1E-33 7.3E-38 190.9 19.7 165 3-181 5-175 (177)
33 2a9k_A RAS-related protein RAL 100.0 6.3E-34 2.2E-38 195.0 16.9 167 3-183 16-184 (187)
34 2iwr_A Centaurin gamma 1; ANK 100.0 6.5E-34 2.2E-38 193.8 16.9 165 3-184 5-173 (178)
35 2gf0_A GTP-binding protein DI- 100.0 3.3E-34 1.1E-38 198.4 15.6 164 3-181 6-172 (199)
36 1z08_A RAS-related protein RAB 100.0 2.2E-33 7.4E-38 189.6 19.2 164 3-180 4-169 (170)
37 2bov_A RAla, RAS-related prote 100.0 7.6E-34 2.6E-38 197.6 17.5 165 3-181 12-178 (206)
38 3q72_A GTP-binding protein RAD 100.0 1.8E-33 6.1E-38 189.4 18.7 162 5-181 2-165 (166)
39 2bme_A RAB4A, RAS-related prot 100.0 2.8E-33 9.6E-38 191.8 19.8 168 4-185 9-178 (186)
40 1ek0_A Protein (GTP-binding pr 100.0 1.4E-33 4.7E-38 190.5 18.0 165 4-179 2-168 (170)
41 2g6b_A RAS-related protein RAB 100.0 4.8E-33 1.6E-37 189.7 20.6 167 3-183 8-177 (180)
42 2efe_B Small GTP-binding prote 100.0 2.7E-33 9.2E-38 191.1 19.3 166 3-182 10-177 (181)
43 2hxs_A RAB-26, RAS-related pro 100.0 6.8E-34 2.3E-38 193.6 16.2 168 2-183 3-176 (178)
44 3con_A GTPase NRAS; structural 100.0 4E-33 1.4E-37 191.8 20.2 167 3-184 19-187 (190)
45 2ew1_A RAS-related protein RAB 100.0 2.3E-33 7.9E-38 194.7 19.1 166 4-183 25-192 (201)
46 1kao_A RAP2A; GTP-binding prot 100.0 6.5E-34 2.2E-38 191.5 15.9 163 4-180 2-166 (167)
47 1ky3_A GTP-binding protein YPT 100.0 1.4E-33 4.9E-38 192.5 17.8 169 3-183 6-181 (182)
48 2bcg_Y Protein YP2, GTP-bindin 100.0 6E-33 2.1E-37 193.2 20.8 165 4-182 7-173 (206)
49 1z0j_A RAB-22, RAS-related pro 100.0 3.4E-33 1.2E-37 188.6 19.0 163 3-179 4-168 (170)
50 3tkl_A RAS-related protein RAB 100.0 4.9E-33 1.7E-37 192.1 20.1 166 4-183 15-182 (196)
51 2il1_A RAB12; G-protein, GDP, 100.0 7.3E-34 2.5E-38 195.9 15.6 165 3-180 24-190 (192)
52 3q85_A GTP-binding protein REM 100.0 2.3E-33 7.8E-38 189.4 17.5 163 5-181 2-168 (169)
53 2oil_A CATX-8, RAS-related pro 100.0 4.8E-33 1.6E-37 191.8 19.4 166 4-183 24-191 (193)
54 1z0f_A RAB14, member RAS oncog 100.0 3E-33 1E-37 190.4 18.1 163 4-180 14-178 (179)
55 1zbd_A Rabphilin-3A; G protein 100.0 3.5E-33 1.2E-37 194.0 18.7 165 3-181 6-172 (203)
56 2erx_A GTP-binding protein DI- 100.0 1.2E-33 4.2E-38 191.0 15.9 164 4-181 2-168 (172)
57 1g16_A RAS-related protein SEC 100.0 3.1E-33 1.1E-37 188.8 17.5 163 4-181 2-166 (170)
58 3cpj_B GTP-binding protein YPT 100.0 7.7E-33 2.6E-37 195.0 19.8 167 4-184 12-180 (223)
59 2atv_A RERG, RAS-like estrogen 100.0 3.1E-33 1.1E-37 193.3 17.2 165 3-182 26-193 (196)
60 3bc1_A RAS-related protein RAB 100.0 5.8E-33 2E-37 191.3 18.4 167 4-184 10-189 (195)
61 1vg8_A RAS-related protein RAB 100.0 7.8E-33 2.7E-37 192.7 19.1 166 3-182 6-177 (207)
62 2y8e_A RAB-protein 6, GH09086P 100.0 5.2E-33 1.8E-37 189.2 17.6 164 3-180 12-177 (179)
63 2o52_A RAS-related protein RAB 100.0 3.8E-33 1.3E-37 193.5 17.1 167 4-184 24-192 (200)
64 1x3s_A RAS-related protein RAB 100.0 1.7E-32 5.8E-37 189.2 20.1 165 4-183 14-181 (195)
65 2wkq_A NPH1-1, RAS-related C3 100.0 1.5E-32 5E-37 204.1 20.8 178 4-181 154-331 (332)
66 2ce2_X GTPase HRAS; signaling 100.0 7.3E-33 2.5E-37 186.0 17.2 162 4-180 2-165 (166)
67 2fg5_A RAB-22B, RAS-related pr 100.0 6.5E-33 2.2E-37 191.1 17.2 165 3-181 21-187 (192)
68 1z06_A RAS-related protein RAB 100.0 6.6E-33 2.3E-37 190.6 17.2 163 3-179 18-187 (189)
69 3cbq_A GTP-binding protein REM 100.0 3.9E-33 1.3E-37 192.7 15.9 166 3-182 21-190 (195)
70 3dz8_A RAS-related protein RAB 100.0 6.3E-34 2.2E-38 196.0 11.6 165 4-182 22-188 (191)
71 2p5s_A RAS and EF-hand domain 100.0 6.3E-33 2.2E-37 192.2 16.6 170 3-180 26-197 (199)
72 2yc2_C IFT27, small RAB-relate 100.0 1.3E-33 4.4E-38 196.7 11.4 169 3-184 18-196 (208)
73 2g3y_A GTP-binding protein GEM 100.0 3.7E-32 1.3E-36 189.5 18.2 166 4-183 36-206 (211)
74 3th5_A RAS-related C3 botulinu 100.0 1.2E-35 4E-40 206.7 0.0 176 3-178 28-203 (204)
75 3cph_A RAS-related protein SEC 100.0 7.4E-32 2.5E-36 188.5 19.2 163 4-181 19-183 (213)
76 3clv_A RAB5 protein, putative; 100.0 8.1E-32 2.8E-36 187.1 18.8 162 4-181 6-205 (208)
77 2f7s_A C25KG, RAS-related prot 100.0 7.6E-33 2.6E-37 194.2 13.7 166 3-182 23-201 (217)
78 3t1o_A Gliding protein MGLA; G 100.0 2.1E-32 7.3E-37 189.0 13.4 166 3-184 12-196 (198)
79 3gj0_A GTP-binding nuclear pro 100.0 2.7E-32 9.3E-37 191.9 12.9 165 3-183 13-178 (221)
80 4bas_A ADP-ribosylation factor 100.0 3.8E-32 1.3E-36 188.1 13.4 170 3-185 15-194 (199)
81 2cjw_A GTP-binding protein GEM 100.0 5.3E-31 1.8E-35 181.6 18.1 166 3-182 4-174 (192)
82 3l0i_B RAS-related protein RAB 100.0 2.9E-33 1E-37 193.9 6.8 164 4-181 32-197 (199)
83 4djt_A GTP-binding nuclear pro 100.0 7.2E-32 2.4E-36 189.3 13.9 167 4-184 10-179 (218)
84 1upt_A ARL1, ADP-ribosylation 100.0 1.6E-31 5.6E-36 180.6 12.5 166 2-181 4-170 (171)
85 1f6b_A SAR1; gtpases, N-termin 100.0 7.9E-31 2.7E-35 181.5 15.8 157 3-178 23-197 (198)
86 1zd9_A ADP-ribosylation factor 100.0 1.4E-31 4.6E-36 183.9 11.7 166 3-181 20-186 (188)
87 1m2o_B GTP-binding protein SAR 100.0 3.6E-30 1.2E-34 177.1 17.7 156 3-177 21-189 (190)
88 2h57_A ADP-ribosylation factor 100.0 4.9E-30 1.7E-34 176.4 17.0 161 3-180 19-187 (190)
89 1r8s_A ADP-ribosylation factor 100.0 4.3E-31 1.5E-35 177.4 11.4 155 6-180 1-162 (164)
90 1zj6_A ADP-ribosylation factor 100.0 5.1E-30 1.7E-34 175.9 16.5 163 3-184 14-182 (187)
91 1ksh_A ARF-like protein 2; sma 100.0 3.5E-30 1.2E-34 176.4 15.4 161 3-181 16-181 (186)
92 1fzq_A ADP-ribosylation factor 100.0 1.2E-30 4.2E-35 178.1 12.2 160 3-181 14-179 (181)
93 2f9l_A RAB11B, member RAS onco 100.0 5.4E-29 1.8E-33 172.4 19.9 167 1-181 1-169 (199)
94 2b6h_A ADP-ribosylation factor 100.0 8.9E-31 3E-35 180.4 10.8 159 2-180 26-191 (192)
95 1moz_A ARL1, ADP-ribosylation 100.0 2.8E-30 9.7E-35 176.4 13.1 160 3-181 16-181 (183)
96 2h17_A ADP-ribosylation factor 100.0 3.5E-30 1.2E-34 175.8 13.6 157 3-177 19-180 (181)
97 2x77_A ADP-ribosylation factor 100.0 5.6E-30 1.9E-34 175.9 14.1 166 3-182 20-186 (189)
98 3llu_A RAS-related GTP-binding 100.0 1E-30 3.6E-35 180.6 10.5 167 3-178 18-195 (196)
99 2lkc_A Translation initiation 100.0 1.1E-28 3.9E-33 167.6 17.3 163 1-184 4-175 (178)
100 2fh5_B SR-beta, signal recogni 100.0 8.1E-30 2.8E-34 178.4 11.4 173 3-177 5-213 (214)
101 3o47_A ADP-ribosylation factor 100.0 1.6E-29 5.6E-34 187.1 10.5 164 4-181 164-328 (329)
102 2zej_A Dardarin, leucine-rich 100.0 3.3E-30 1.1E-34 176.5 5.9 168 5-182 2-180 (184)
103 2qu8_A Putative nucleolar GTP- 100.0 8.4E-29 2.9E-33 174.9 13.2 167 3-183 27-208 (228)
104 1oix_A RAS-related protein RAB 100.0 2.4E-27 8.1E-32 163.2 19.6 161 4-178 28-190 (191)
105 2wji_A Ferrous iron transport 100.0 1.8E-28 6E-33 165.0 13.3 153 4-178 2-163 (165)
106 3lvq_E ARF-GAP with SH3 domain 100.0 2.9E-28 1E-32 189.9 15.2 168 3-184 320-488 (497)
107 3r7w_A Gtpase1, GTP-binding pr 100.0 1.6E-28 5.3E-33 180.4 11.0 168 4-181 2-182 (307)
108 3c5h_A Glucocorticoid receptor 100.0 1.9E-28 6.5E-33 175.7 9.1 162 3-179 17-254 (255)
109 2dyk_A GTP-binding protein; GT 100.0 3.6E-28 1.2E-32 162.6 9.4 150 6-178 2-160 (161)
110 3iev_A GTP-binding protein ERA 99.9 2.6E-27 8.9E-32 173.9 12.8 164 3-181 8-183 (308)
111 3r7w_B Gtpase2, GTP-binding pr 99.9 1.8E-28 6.2E-33 178.9 5.5 163 7-182 1-176 (331)
112 3a1s_A Iron(II) transport prot 99.9 2.4E-27 8.1E-32 170.0 11.2 156 3-179 3-166 (258)
113 2cxx_A Probable GTP-binding pr 99.9 4E-28 1.4E-32 166.6 6.0 159 6-184 2-188 (190)
114 3pqc_A Probable GTP-binding pr 99.9 2.4E-27 8.2E-32 163.3 9.8 161 3-180 21-194 (195)
115 1svi_A GTP-binding protein YSX 99.9 1.6E-27 5.5E-32 164.3 8.1 158 4-179 22-194 (195)
116 3dpu_A RAB family protein; roc 99.9 3.6E-27 1.2E-31 185.1 10.9 163 3-182 39-210 (535)
117 2gj8_A MNME, tRNA modification 99.9 7.7E-27 2.6E-31 158.0 10.7 153 4-180 3-166 (172)
118 2wjg_A FEOB, ferrous iron tran 99.9 1.3E-26 4.3E-31 158.9 11.1 158 3-182 5-171 (188)
119 3b1v_A Ferrous iron uptake tra 99.9 6.5E-27 2.2E-31 168.6 9.7 155 4-180 2-164 (272)
120 1wf3_A GTP-binding protein; GT 99.9 1.1E-26 3.9E-31 169.7 11.0 158 4-180 6-173 (301)
121 4dhe_A Probable GTP-binding pr 99.9 4.7E-27 1.6E-31 165.3 5.9 167 3-183 27-214 (223)
122 3iby_A Ferrous iron transport 99.9 2E-26 6.8E-31 165.0 8.8 150 6-177 2-164 (256)
123 3i8s_A Ferrous iron transport 99.9 7.2E-27 2.5E-31 169.0 5.9 156 4-181 2-170 (274)
124 3gee_A MNME, tRNA modification 99.9 2.2E-25 7.7E-30 171.6 12.8 156 4-179 232-397 (476)
125 3k53_A Ferrous iron transport 99.9 1.1E-25 3.6E-30 162.8 10.0 157 4-181 2-167 (271)
126 4dcu_A GTP-binding protein ENG 99.9 9.1E-26 3.1E-30 174.0 6.5 162 4-183 194-372 (456)
127 2hjg_A GTP-binding protein ENG 99.9 6.2E-26 2.1E-30 174.0 5.0 161 4-182 174-351 (436)
128 3qq5_A Small GTP-binding prote 99.9 4.1E-25 1.4E-29 167.6 7.8 156 4-181 33-197 (423)
129 1ega_A Protein (GTP-binding pr 99.9 1.9E-24 6.4E-29 158.2 10.8 159 4-180 7-175 (301)
130 1nrj_B SR-beta, signal recogni 99.9 1.6E-25 5.3E-30 157.0 3.8 149 3-166 10-170 (218)
131 1mky_A Probable GTP-binding pr 99.9 1.8E-24 6.1E-29 166.0 9.7 154 6-181 2-167 (439)
132 3sjy_A Translation initiation 99.9 5.7E-24 2E-28 161.6 12.0 169 3-183 6-195 (403)
133 1lnz_A SPO0B-associated GTP-bi 99.9 1.1E-24 3.7E-29 161.4 7.0 159 7-183 160-333 (342)
134 2e87_A Hypothetical protein PH 99.9 1.2E-23 4E-28 157.6 12.5 160 4-181 166-337 (357)
135 1xzp_A Probable tRNA modificat 99.9 1.8E-24 6.3E-29 166.7 7.8 152 5-180 243-405 (482)
136 3izy_P Translation initiation 99.9 1.8E-25 6.1E-30 173.6 2.0 163 3-181 2-169 (537)
137 2xtp_A GTPase IMAP family memb 99.9 6.4E-24 2.2E-28 152.7 10.0 167 4-181 21-209 (260)
138 2hjg_A GTP-binding protein ENG 99.9 1.4E-24 4.9E-29 166.4 6.1 155 5-180 3-165 (436)
139 1cip_A Protein (guanine nucleo 99.9 1.5E-23 5.1E-28 155.9 11.2 131 52-183 192-347 (353)
140 3geh_A MNME, tRNA modification 99.9 3E-24 1E-28 164.8 6.0 154 4-182 223-386 (462)
141 1wb1_A Translation elongation 99.9 1.6E-23 5.4E-28 162.1 9.8 160 3-181 17-190 (482)
142 1g7s_A Translation initiation 99.9 5E-23 1.7E-27 162.2 12.5 173 1-180 1-218 (594)
143 1s0u_A EIF-2-gamma, translatio 99.9 1.6E-22 5.4E-27 153.9 14.8 163 4-182 7-200 (408)
144 3j2k_7 ERF3, eukaryotic polype 99.9 7E-23 2.4E-27 156.9 12.6 161 3-172 15-217 (439)
145 2xtz_A Guanine nucleotide-bind 99.9 2E-23 6.9E-28 155.1 7.9 133 51-184 181-349 (354)
146 3ohm_A Guanine nucleotide-bind 99.9 9.3E-23 3.2E-27 149.6 11.3 134 50-184 164-322 (327)
147 1zo1_I IF2, translation initia 99.9 9E-24 3.1E-28 162.9 5.6 162 3-177 2-164 (501)
148 1mky_A Probable GTP-binding pr 99.9 8.7E-23 3E-27 156.7 10.8 161 4-182 179-357 (439)
149 3cb4_D GTP-binding protein LEP 99.9 1E-22 3.5E-27 160.3 11.4 161 4-182 3-184 (599)
150 3tr5_A RF-3, peptide chain rel 99.9 3.1E-23 1.1E-27 161.5 8.3 118 4-125 12-150 (528)
151 4dcu_A GTP-binding protein ENG 99.9 1.5E-23 5.1E-28 161.6 5.1 156 4-180 22-185 (456)
152 2ywe_A GTP-binding protein LEP 99.9 5.7E-22 2E-26 155.9 13.7 161 4-182 5-186 (600)
153 2c78_A Elongation factor TU-A; 99.9 1E-22 3.4E-27 154.9 9.1 167 3-182 9-214 (405)
154 1d2e_A Elongation factor TU (E 99.9 1.5E-22 5.2E-27 153.5 9.8 165 4-182 2-197 (397)
155 3lxx_A GTPase IMAP family memb 99.9 2.9E-22 9.8E-27 142.3 10.0 166 3-180 27-214 (239)
156 1zcb_A G alpha I/13; GTP-bindi 99.9 7.2E-22 2.4E-26 147.3 12.2 133 52-184 200-357 (362)
157 3lxw_A GTPase IMAP family memb 99.9 2.2E-22 7.7E-27 143.4 9.1 169 3-181 19-209 (247)
158 3p26_A Elongation factor 1 alp 99.9 1.4E-22 4.9E-27 157.1 8.5 157 4-169 32-227 (483)
159 4fid_A G protein alpha subunit 99.9 2.7E-22 9.2E-27 147.6 9.5 133 48-180 156-328 (340)
160 1kk1_A EIF2gamma; initiation o 99.9 4.2E-22 1.4E-26 151.7 10.8 163 4-182 9-202 (410)
161 2qtf_A Protein HFLX, GTP-bindi 99.9 2.4E-21 8.1E-26 144.9 13.0 163 5-182 178-356 (364)
162 3t5d_A Septin-7; GTP-binding p 99.9 1.9E-22 6.3E-27 146.0 6.5 160 4-178 7-202 (274)
163 2elf_A Protein translation elo 99.9 3.4E-22 1.2E-26 149.8 7.9 150 7-181 23-181 (370)
164 2ged_A SR-beta, signal recogni 99.9 1.7E-22 5.7E-27 138.9 5.7 114 3-124 46-171 (193)
165 1zun_B Sulfate adenylate trans 99.9 2.6E-21 8.8E-26 148.3 11.0 155 4-170 23-214 (434)
166 1r5b_A Eukaryotic peptide chai 99.9 8.5E-22 2.9E-26 152.0 8.2 160 4-171 42-243 (467)
167 2qag_A Septin-2, protein NEDD5 99.9 9.7E-23 3.3E-27 152.5 2.6 162 4-181 36-234 (361)
168 1jny_A EF-1-alpha, elongation 99.8 2.6E-21 8.8E-26 148.3 9.1 159 4-170 5-203 (435)
169 3avx_A Elongation factor TS, e 99.8 2.8E-21 9.7E-26 159.3 9.8 165 4-181 295-487 (1289)
170 1f60_A Elongation factor EEF1A 99.8 8.1E-22 2.8E-26 151.8 6.2 156 4-170 6-202 (458)
171 3izq_1 HBS1P, elongation facto 99.8 1.3E-21 4.4E-26 155.0 7.5 157 4-170 166-362 (611)
172 3mca_A HBS1, elongation factor 99.8 2.6E-22 8.8E-27 158.5 2.9 165 4-179 176-396 (592)
173 1azs_C GS-alpha; complex (lyas 99.8 4.3E-21 1.5E-25 144.2 9.3 131 52-183 216-388 (402)
174 2aka_B Dynamin-1; fusion prote 99.8 1.7E-21 5.8E-26 142.6 6.0 160 4-177 25-250 (299)
175 2h5e_A Peptide chain release f 99.8 2.4E-20 8.2E-25 145.5 11.1 119 4-126 12-151 (529)
176 3def_A T7I23.11 protein; chlor 99.8 1.2E-20 4.1E-25 135.7 7.3 119 4-123 35-165 (262)
177 1pui_A ENGB, probable GTP-bind 99.8 3.4E-20 1.1E-24 129.0 7.5 160 4-180 25-199 (210)
178 1dar_A EF-G, elongation factor 99.8 8.4E-20 2.9E-24 146.7 10.1 118 4-125 11-145 (691)
179 2dy1_A Elongation factor G; tr 99.8 1.1E-19 3.8E-24 145.5 10.7 115 4-122 8-139 (665)
180 2j69_A Bacterial dynamin-like 99.8 1.6E-19 5.6E-24 145.1 11.3 175 4-182 68-327 (695)
181 1h65_A Chloroplast outer envel 99.8 9.1E-20 3.1E-24 131.7 8.8 120 4-124 38-169 (270)
182 1jwy_B Dynamin A GTPase domain 99.8 2.9E-20 1E-24 137.0 6.2 115 53-181 131-263 (315)
183 2rdo_7 EF-G, elongation factor 99.8 1E-18 3.4E-23 140.6 13.3 118 4-125 9-150 (704)
184 2xex_A Elongation factor G; GT 99.8 5.7E-19 1.9E-23 141.9 11.2 118 4-125 9-143 (693)
185 3t34_A Dynamin-related protein 99.8 7.9E-20 2.7E-24 137.0 5.5 153 6-174 35-255 (360)
186 1udx_A The GTP-binding protein 99.8 7.7E-19 2.6E-23 133.0 10.4 159 7-183 159-328 (416)
187 3vqt_A RF-3, peptide chain rel 99.8 1.2E-18 4.2E-23 136.4 11.1 119 4-126 30-169 (548)
188 2qnr_A Septin-2, protein NEDD5 99.8 9.5E-20 3.2E-24 133.2 3.1 161 4-181 17-215 (301)
189 1wxq_A GTP-binding protein; st 99.8 1.4E-18 4.8E-23 131.2 9.1 84 6-89 1-114 (397)
190 2qag_C Septin-7; cell cycle, c 99.8 2E-18 6.7E-23 130.9 8.7 159 4-178 30-225 (418)
191 3p32_A Probable GTPase RV1496/ 99.7 2E-18 7E-23 129.0 6.9 105 52-180 171-284 (355)
192 2x2e_A Dynamin-1; nitration, h 99.7 2.4E-18 8.3E-23 128.6 6.0 158 5-176 31-254 (353)
193 2wsm_A Hydrogenase expression/ 99.7 4.8E-18 1.6E-22 119.1 7.2 157 4-183 29-217 (221)
194 1u0l_A Probable GTPase ENGC; p 99.7 1.3E-18 4.4E-23 127.3 3.6 136 20-177 32-170 (301)
195 3j25_A Tetracycline resistance 99.7 3E-18 1E-22 136.7 4.8 174 6-183 3-242 (638)
196 2hf9_A Probable hydrogenase ni 99.7 3.1E-16 1.1E-20 110.2 11.0 154 4-180 37-224 (226)
197 2www_A Methylmalonic aciduria 99.7 3.3E-17 1.1E-21 122.1 5.0 104 52-179 166-278 (349)
198 1n0u_A EF-2, elongation factor 99.7 5.1E-17 1.8E-21 133.0 6.5 115 4-123 18-164 (842)
199 1jal_A YCHF protein; nucleotid 99.7 1.6E-15 5.3E-20 112.7 12.7 84 5-88 2-108 (363)
200 2p67_A LAO/AO transport system 99.7 2.3E-17 7.9E-22 122.7 2.4 107 52-179 148-260 (341)
201 2qpt_A EH domain-containing pr 99.6 7.2E-17 2.5E-21 126.6 4.2 116 4-124 64-233 (550)
202 4fn5_A EF-G 1, elongation fact 99.6 1.6E-15 5.5E-20 122.5 11.7 116 6-125 14-153 (709)
203 3zvr_A Dynamin-1; hydrolase, D 99.6 6.4E-15 2.2E-19 118.4 10.4 159 5-177 51-275 (772)
204 2dby_A GTP-binding protein; GD 99.6 2.7E-14 9.3E-19 106.6 12.3 82 6-88 2-111 (368)
205 4a9a_A Ribosome-interacting GT 99.6 4.8E-15 1.6E-19 110.7 7.6 115 6-122 73-195 (376)
206 1yrb_A ATP(GTP)binding protein 99.6 3.7E-15 1.3E-19 107.0 6.6 125 53-180 109-257 (262)
207 2qm8_A GTPase/ATPase; G protei 99.5 2.9E-15 9.9E-20 111.1 3.5 105 52-179 147-260 (337)
208 3l82_B F-box only protein 4; T 99.5 2E-14 6.9E-19 97.8 3.5 111 60-182 109-225 (227)
209 2yv5_A YJEQ protein; hydrolase 99.4 2.9E-13 9.9E-18 99.0 7.3 110 51-176 48-165 (302)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 3.6E-13 1.2E-17 101.1 4.3 89 4-92 21-132 (396)
211 3l2o_B F-box only protein 4; s 99.3 6.6E-13 2.2E-17 94.7 3.5 111 60-182 194-310 (312)
212 3ec1_A YQEH GTPase; atnos1, at 99.2 4.5E-12 1.5E-16 95.1 3.8 113 5-124 162-289 (369)
213 3h2y_A GTPase family protein; 99.1 9.7E-12 3.3E-16 93.2 2.1 113 5-124 160-288 (368)
214 3h2y_A GTPase family protein; 99.1 8.6E-11 2.9E-15 88.1 6.9 98 62-178 55-158 (368)
215 3sop_A Neuronal-specific septi 99.1 3.4E-10 1.2E-14 81.3 9.1 118 5-126 2-157 (270)
216 1tq4_A IIGP1, interferon-induc 99.1 3E-09 1E-13 80.6 12.3 168 5-183 69-256 (413)
217 3ec1_A YQEH GTPase; atnos1, at 99.0 2.8E-10 9.7E-15 85.4 6.2 103 62-179 57-161 (369)
218 2j37_W Signal recognition part 99.0 6.2E-11 2.1E-15 91.8 1.7 165 5-177 101-310 (504)
219 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 5.6E-10 1.9E-14 84.0 6.6 85 4-88 19-127 (392)
220 2qag_B Septin-6, protein NEDD5 99.0 3.2E-09 1.1E-13 80.5 9.9 116 6-126 43-193 (427)
221 1puj_A YLQF, conserved hypothe 98.9 2.4E-09 8.1E-14 77.5 5.3 58 4-64 119-176 (282)
222 1puj_A YLQF, conserved hypothe 98.9 4.6E-09 1.6E-13 75.9 6.6 103 57-180 3-106 (282)
223 3cnl_A YLQF, putative uncharac 98.8 3.7E-09 1.3E-13 75.7 3.5 57 6-65 100-156 (262)
224 2v3c_C SRP54, signal recogniti 98.6 3.2E-08 1.1E-12 75.6 5.5 112 5-123 99-252 (432)
225 3dm5_A SRP54, signal recogniti 98.6 5.7E-08 2E-12 74.0 6.6 113 5-123 100-253 (443)
226 1f5n_A Interferon-induced guan 98.5 1E-07 3.5E-12 75.2 4.7 62 4-65 37-103 (592)
227 3szr_A Interferon-induced GTP- 98.4 2.3E-07 7.8E-12 74.0 5.1 25 7-31 47-71 (608)
228 1j8m_F SRP54, signal recogniti 98.4 1.7E-07 5.8E-12 68.2 3.8 92 52-169 180-280 (297)
229 3cnl_A YLQF, putative uncharac 98.4 2.4E-07 8E-12 66.3 4.4 94 60-177 4-98 (262)
230 3kl4_A SRP54, signal recogniti 98.4 2.2E-07 7.6E-12 70.8 4.1 91 52-167 179-277 (433)
231 1t9h_A YLOQ, probable GTPase E 98.3 2.7E-07 9.1E-12 67.3 2.8 91 70-173 80-170 (307)
232 3e70_C DPA, signal recognition 98.2 6.4E-07 2.2E-11 66.0 3.4 23 5-27 129-151 (328)
233 3q5d_A Atlastin-1; G protein, 98.0 3.6E-06 1.2E-10 64.4 4.3 23 6-28 68-90 (447)
234 2rcn_A Probable GTPase ENGC; Y 97.9 5.3E-05 1.8E-09 56.4 8.9 84 73-174 127-213 (358)
235 1ye8_A Protein THEP1, hypothet 97.8 1.3E-05 4.4E-10 53.9 3.2 24 6-29 1-24 (178)
236 1bif_A 6-phosphofructo-2-kinas 97.8 2.4E-07 8.4E-12 71.7 -6.5 106 4-116 38-156 (469)
237 1t9h_A YLOQ, probable GTPase E 97.8 1.1E-05 3.8E-10 58.8 2.5 25 6-30 174-198 (307)
238 1cke_A CK, MSSA, protein (cyti 97.7 1.9E-05 6.5E-10 54.9 3.4 27 1-27 1-27 (227)
239 1kgd_A CASK, peripheral plasma 97.7 2E-05 6.8E-10 53.0 3.0 24 6-29 6-29 (180)
240 2yv5_A YJEQ protein; hydrolase 97.7 0.00013 4.5E-09 53.2 7.1 24 6-30 166-189 (302)
241 2xxa_A Signal recognition part 97.7 1.8E-05 6.1E-10 60.5 2.6 65 52-123 183-254 (433)
242 1lvg_A Guanylate kinase, GMP k 97.7 2.5E-05 8.4E-10 53.4 3.0 23 6-28 5-27 (198)
243 3tau_A Guanylate kinase, GMP k 97.6 3.4E-05 1.2E-09 53.1 3.5 29 1-29 4-32 (208)
244 3a00_A Guanylate kinase, GMP k 97.6 3.6E-05 1.2E-09 52.0 2.9 22 8-29 4-25 (186)
245 3tr0_A Guanylate kinase, GMP k 97.6 3.8E-05 1.3E-09 52.5 3.0 22 7-28 9-30 (205)
246 3t61_A Gluconokinase; PSI-biol 97.6 4.3E-05 1.5E-09 52.2 3.3 24 5-28 18-41 (202)
247 2bbw_A Adenylate kinase 4, AK4 97.6 4.4E-05 1.5E-09 53.9 3.3 23 4-26 26-48 (246)
248 1zp6_A Hypothetical protein AT 97.6 3.9E-05 1.3E-09 51.8 2.8 23 6-28 10-32 (191)
249 1s96_A Guanylate kinase, GMP k 97.5 4.7E-05 1.6E-09 52.9 3.0 25 6-30 17-41 (219)
250 1znw_A Guanylate kinase, GMP k 97.5 4.7E-05 1.6E-09 52.3 3.0 23 7-29 22-44 (207)
251 3ney_A 55 kDa erythrocyte memb 97.5 5E-05 1.7E-09 51.7 3.0 25 5-29 19-43 (197)
252 1kag_A SKI, shikimate kinase I 97.5 5.4E-05 1.9E-09 50.3 3.2 24 5-28 4-27 (173)
253 3c8u_A Fructokinase; YP_612366 97.5 4.7E-05 1.6E-09 52.4 2.9 24 5-28 22-45 (208)
254 4gp7_A Metallophosphoesterase; 97.5 4.1E-05 1.4E-09 51.0 2.5 20 7-26 11-30 (171)
255 1z6g_A Guanylate kinase; struc 97.5 5.1E-05 1.8E-09 52.6 3.0 23 7-29 25-47 (218)
256 1ly1_A Polynucleotide kinase; 97.5 6.5E-05 2.2E-09 50.1 3.4 23 5-27 2-24 (181)
257 3trf_A Shikimate kinase, SK; a 97.5 5.8E-05 2E-09 50.7 3.2 27 1-27 1-27 (185)
258 1ex7_A Guanylate kinase; subst 97.5 6E-05 2E-09 50.9 3.0 22 8-29 4-25 (186)
259 1htw_A HI0065; nucleotide-bind 97.5 7.6E-05 2.6E-09 49.1 3.0 23 7-29 35-57 (158)
260 3r20_A Cytidylate kinase; stru 97.4 8.3E-05 2.8E-09 52.0 3.2 27 1-27 5-31 (233)
261 1via_A Shikimate kinase; struc 97.4 8.1E-05 2.8E-09 49.6 3.1 21 7-27 6-26 (175)
262 3tif_A Uncharacterized ABC tra 97.4 9.7E-05 3.3E-09 51.8 3.5 24 7-30 33-56 (235)
263 2qor_A Guanylate kinase; phosp 97.4 9.7E-05 3.3E-09 50.6 3.4 26 4-29 11-36 (204)
264 1uf9_A TT1252 protein; P-loop, 97.4 9.8E-05 3.4E-09 50.3 3.3 28 1-28 4-31 (203)
265 2j41_A Guanylate kinase; GMP, 97.4 8.6E-05 2.9E-09 50.7 3.0 25 5-29 6-30 (207)
266 2bdt_A BH3686; alpha-beta prot 97.4 9E-05 3.1E-09 50.0 3.0 21 7-27 4-24 (189)
267 3fb4_A Adenylate kinase; psych 97.4 0.0001 3.4E-09 50.9 3.1 22 6-27 1-22 (216)
268 3kb2_A SPBC2 prophage-derived 97.4 9.7E-05 3.3E-09 48.9 2.9 22 7-28 3-24 (173)
269 2plr_A DTMP kinase, probable t 97.4 0.00012 4.2E-09 50.1 3.5 24 4-27 3-26 (213)
270 4eun_A Thermoresistant glucoki 97.4 0.0001 3.5E-09 50.3 3.0 22 6-27 30-51 (200)
271 3dl0_A Adenylate kinase; phosp 97.4 0.00011 3.6E-09 50.8 3.1 22 6-27 1-22 (216)
272 3lw7_A Adenylate kinase relate 97.4 0.00011 3.6E-09 48.7 3.0 20 6-25 2-21 (179)
273 2i3b_A HCR-ntpase, human cance 97.4 0.00011 3.8E-09 49.7 3.1 22 7-28 3-24 (189)
274 2pcj_A ABC transporter, lipopr 97.4 0.00012 4.1E-09 51.0 3.3 24 7-30 32-55 (224)
275 2rcn_A Probable GTPase ENGC; Y 97.4 0.00014 4.8E-09 54.1 3.8 24 7-30 217-240 (358)
276 3sr0_A Adenylate kinase; phosp 97.4 0.00012 4.1E-09 50.3 3.1 22 6-27 1-22 (206)
277 3asz_A Uridine kinase; cytidin 97.3 0.0001 3.5E-09 50.7 2.8 24 5-28 6-29 (211)
278 2onk_A Molybdate/tungstate ABC 97.3 0.00015 5E-09 51.1 3.6 24 7-30 26-49 (240)
279 1qhx_A CPT, protein (chloramph 97.3 0.00015 5.1E-09 48.3 3.4 24 5-28 3-26 (178)
280 1sgw_A Putative ABC transporte 97.3 0.00016 5.4E-09 50.0 3.5 24 7-30 37-60 (214)
281 2eyu_A Twitching motility prot 97.3 0.00012 4.1E-09 52.2 3.0 22 7-28 27-48 (261)
282 3cm0_A Adenylate kinase; ATP-b 97.3 0.00015 5.2E-09 48.6 3.4 24 4-27 3-26 (186)
283 1tev_A UMP-CMP kinase; ploop, 97.3 0.00015 5.3E-09 48.9 3.4 24 4-27 2-25 (196)
284 3tlx_A Adenylate kinase 2; str 97.3 0.00017 5.7E-09 50.9 3.6 24 4-27 28-51 (243)
285 2cbz_A Multidrug resistance-as 97.3 0.00012 4.2E-09 51.4 2.9 23 7-29 33-55 (237)
286 3gfo_A Cobalt import ATP-bindi 97.3 0.00016 5.4E-09 51.9 3.5 24 7-30 36-59 (275)
287 2if2_A Dephospho-COA kinase; a 97.3 0.00013 4.5E-09 49.8 3.0 22 6-27 2-23 (204)
288 3b85_A Phosphate starvation-in 97.3 0.00012 4.2E-09 50.3 2.8 22 7-28 24-45 (208)
289 1b0u_A Histidine permease; ABC 97.3 0.00016 5.6E-09 51.5 3.5 24 7-30 34-57 (262)
290 4g1u_C Hemin import ATP-bindin 97.3 0.00017 5.7E-09 51.6 3.5 24 7-30 39-62 (266)
291 1knq_A Gluconate kinase; ALFA/ 97.3 0.00014 4.9E-09 48.3 3.0 22 6-27 9-30 (175)
292 1np6_A Molybdopterin-guanine d 97.3 0.00015 5.1E-09 48.4 3.0 23 6-28 7-29 (174)
293 2rhm_A Putative kinase; P-loop 97.3 0.00017 5.8E-09 48.7 3.4 24 4-27 4-27 (193)
294 1g6h_A High-affinity branched- 97.3 0.00017 5.8E-09 51.3 3.5 24 7-30 35-58 (257)
295 2v9p_A Replication protein E1; 97.3 0.00014 4.8E-09 52.9 3.1 22 7-28 128-149 (305)
296 2c95_A Adenylate kinase 1; tra 97.3 0.00011 3.6E-09 49.8 2.3 24 4-27 8-31 (196)
297 2pze_A Cystic fibrosis transme 97.3 0.00018 6.2E-09 50.3 3.5 24 7-30 36-59 (229)
298 1mv5_A LMRA, multidrug resista 97.3 0.00019 6.4E-09 50.6 3.6 24 7-30 30-53 (243)
299 1u0l_A Probable GTPase ENGC; p 97.3 0.00017 5.8E-09 52.5 3.5 26 7-32 171-196 (301)
300 2ff7_A Alpha-hemolysin translo 97.3 0.00018 6.2E-09 50.8 3.5 24 7-30 37-60 (247)
301 1kht_A Adenylate kinase; phosp 97.3 0.00017 5.9E-09 48.5 3.2 23 5-27 3-25 (192)
302 2olj_A Amino acid ABC transpor 97.3 0.00019 6.6E-09 51.2 3.5 24 7-30 52-75 (263)
303 2cdn_A Adenylate kinase; phosp 97.3 0.0002 7E-09 48.8 3.5 25 3-27 18-42 (201)
304 1vpl_A ABC transporter, ATP-bi 97.3 0.0002 6.8E-09 50.9 3.5 24 7-30 43-66 (256)
305 3vaa_A Shikimate kinase, SK; s 97.3 0.00018 6.1E-09 49.0 3.2 22 6-27 26-47 (199)
306 3ec2_A DNA replication protein 97.3 0.00013 4.6E-09 48.8 2.5 23 6-28 39-61 (180)
307 1ji0_A ABC transporter; ATP bi 97.3 0.0002 6.8E-09 50.4 3.5 24 7-30 34-57 (240)
308 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00016 5.6E-09 51.2 3.0 22 7-28 31-52 (250)
309 2jaq_A Deoxyguanosine kinase; 97.2 0.00018 6.3E-09 48.9 3.2 21 7-27 2-22 (205)
310 2qi9_C Vitamin B12 import ATP- 97.2 0.00016 5.6E-09 51.1 3.0 24 7-30 28-51 (249)
311 1jjv_A Dephospho-COA kinase; P 97.2 0.00019 6.6E-09 49.0 3.3 22 6-27 3-24 (206)
312 3lnc_A Guanylate kinase, GMP k 97.2 0.00011 3.9E-09 51.2 2.1 22 7-28 29-51 (231)
313 4e22_A Cytidylate kinase; P-lo 97.2 0.00022 7.4E-09 50.6 3.6 23 4-26 26-48 (252)
314 2ghi_A Transport protein; mult 97.2 0.00016 5.5E-09 51.5 2.9 23 7-29 48-70 (260)
315 2v54_A DTMP kinase, thymidylat 97.2 0.00022 7.7E-09 48.5 3.5 25 4-28 3-27 (204)
316 3uie_A Adenylyl-sulfate kinase 97.2 0.00018 6.3E-09 49.0 3.0 24 5-28 25-48 (200)
317 3aez_A Pantothenate kinase; tr 97.2 0.00017 6E-09 52.7 3.0 24 5-28 90-113 (312)
318 2zu0_C Probable ATP-dependent 97.2 0.00018 6.3E-09 51.4 3.1 22 7-28 48-69 (267)
319 1nks_A Adenylate kinase; therm 97.2 0.0002 6.8E-09 48.3 3.1 21 7-27 3-23 (194)
320 2wwf_A Thymidilate kinase, put 97.2 0.00022 7.6E-09 48.9 3.4 24 4-27 9-32 (212)
321 1nn5_A Similar to deoxythymidy 97.2 0.0002 6.8E-09 49.2 3.1 24 4-27 8-31 (215)
322 2ihy_A ABC transporter, ATP-bi 97.2 0.00023 7.9E-09 51.2 3.5 24 7-30 49-72 (279)
323 1e4v_A Adenylate kinase; trans 97.2 0.00018 6.3E-09 49.5 2.9 22 6-27 1-22 (214)
324 1gvn_B Zeta; postsegregational 97.2 0.00025 8.5E-09 51.3 3.7 25 4-28 32-56 (287)
325 2ixe_A Antigen peptide transpo 97.2 0.00023 7.9E-09 51.0 3.5 24 7-30 47-70 (271)
326 2nq2_C Hypothetical ABC transp 97.2 0.00025 8.4E-09 50.3 3.5 24 7-30 33-56 (253)
327 2ehv_A Hypothetical protein PH 97.2 0.0002 6.9E-09 50.3 3.0 20 7-26 32-51 (251)
328 1y63_A LMAJ004144AAA protein; 97.2 0.00026 9.1E-09 47.6 3.4 24 5-28 10-33 (184)
329 3crm_A TRNA delta(2)-isopenten 97.2 0.00025 8.7E-09 51.9 3.5 27 1-27 1-27 (323)
330 1ukz_A Uridylate kinase; trans 97.2 0.0003 1E-08 47.9 3.7 24 4-27 14-37 (203)
331 4a74_A DNA repair and recombin 97.2 0.0002 6.7E-09 49.7 2.8 23 7-29 27-49 (231)
332 1aky_A Adenylate kinase; ATP:A 97.2 0.00025 8.7E-09 49.0 3.3 24 4-27 3-26 (220)
333 2f1r_A Molybdopterin-guanine d 97.2 0.0001 3.5E-09 49.1 1.2 23 7-29 4-26 (171)
334 2yz2_A Putative ABC transporte 97.2 0.00028 9.4E-09 50.5 3.5 24 7-30 35-58 (266)
335 1zak_A Adenylate kinase; ATP:A 97.2 0.00024 8.2E-09 49.2 3.0 24 4-27 4-27 (222)
336 2jeo_A Uridine-cytidine kinase 97.1 0.00024 8.3E-09 50.0 3.0 23 5-27 25-47 (245)
337 3iij_A Coilin-interacting nucl 97.1 0.00032 1.1E-08 46.9 3.5 23 5-27 11-33 (180)
338 2pt5_A Shikimate kinase, SK; a 97.1 0.0003 1E-08 46.4 3.2 21 7-27 2-22 (168)
339 1lw7_A Transcriptional regulat 97.1 0.00022 7.5E-09 53.4 2.8 25 5-29 170-194 (365)
340 2kjq_A DNAA-related protein; s 97.1 0.00022 7.7E-09 46.3 2.5 23 7-29 38-60 (149)
341 2iyv_A Shikimate kinase, SK; t 97.1 0.00028 9.6E-09 47.3 3.0 22 6-27 3-24 (184)
342 2pjz_A Hypothetical protein ST 97.1 0.00034 1.2E-08 49.9 3.6 23 7-29 32-54 (263)
343 3jvv_A Twitching mobility prot 97.1 0.00025 8.5E-09 52.9 3.0 22 7-28 125-146 (356)
344 1a7j_A Phosphoribulokinase; tr 97.1 0.00019 6.6E-09 51.9 2.3 27 1-27 1-27 (290)
345 3nh6_A ATP-binding cassette SU 97.1 0.00017 5.9E-09 52.5 2.0 24 7-30 82-105 (306)
346 1vht_A Dephospho-COA kinase; s 97.1 0.00035 1.2E-08 48.2 3.5 24 4-27 3-26 (218)
347 1qf9_A UMP/CMP kinase, protein 97.1 0.00036 1.2E-08 47.0 3.5 24 4-27 5-28 (194)
348 1zd8_A GTP:AMP phosphotransfer 97.1 0.00029 9.8E-09 49.0 3.0 23 5-27 7-29 (227)
349 2qt1_A Nicotinamide riboside k 97.1 0.00034 1.1E-08 47.9 3.3 24 5-28 21-44 (207)
350 2x8a_A Nuclear valosin-contain 97.1 0.0003 1E-08 50.5 3.0 22 7-28 46-67 (274)
351 2xb4_A Adenylate kinase; ATP-b 97.1 0.00034 1.1E-08 48.6 3.2 22 6-27 1-22 (223)
352 3tqc_A Pantothenate kinase; bi 97.1 0.0004 1.4E-08 50.9 3.6 24 4-27 91-114 (321)
353 1xjc_A MOBB protein homolog; s 97.1 0.00036 1.2E-08 46.3 3.0 23 6-28 5-27 (169)
354 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00037 1.3E-08 51.9 3.3 24 8-31 33-56 (359)
355 3be4_A Adenylate kinase; malar 97.1 0.00037 1.3E-08 48.2 3.2 24 4-27 4-27 (217)
356 2ze6_A Isopentenyl transferase 97.1 0.00034 1.2E-08 49.6 3.0 21 7-27 3-23 (253)
357 1odf_A YGR205W, hypothetical 3 97.0 0.00045 1.5E-08 50.0 3.6 24 4-27 30-53 (290)
358 2yvu_A Probable adenylyl-sulfa 97.0 0.00052 1.8E-08 46.1 3.8 25 4-28 12-36 (186)
359 3tui_C Methionine import ATP-b 97.0 0.00044 1.5E-08 51.6 3.6 24 7-30 56-79 (366)
360 2bwj_A Adenylate kinase 5; pho 97.0 0.00034 1.2E-08 47.4 2.8 23 5-27 12-34 (199)
361 3umf_A Adenylate kinase; rossm 97.0 0.00037 1.3E-08 48.2 3.0 20 8-27 32-51 (217)
362 2bbs_A Cystic fibrosis transme 97.0 0.0003 1E-08 50.9 2.7 23 7-29 66-88 (290)
363 1rj9_A FTSY, signal recognitio 97.0 0.00036 1.2E-08 50.9 3.0 22 6-27 103-124 (304)
364 2pbr_A DTMP kinase, thymidylat 97.0 0.00041 1.4E-08 46.8 3.1 21 7-27 2-22 (195)
365 1z47_A CYSA, putative ABC-tran 97.0 0.00046 1.6E-08 51.3 3.6 24 7-30 43-66 (355)
366 1rz3_A Hypothetical protein rb 97.0 0.00036 1.2E-08 47.6 2.8 23 5-27 22-44 (201)
367 1ak2_A Adenylate kinase isoenz 97.0 0.00047 1.6E-08 48.2 3.4 24 4-27 15-38 (233)
368 1sq5_A Pantothenate kinase; P- 97.0 0.00035 1.2E-08 51.0 2.8 24 5-28 80-103 (308)
369 2ewv_A Twitching motility prot 97.0 0.00036 1.2E-08 52.4 2.9 22 7-28 138-159 (372)
370 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00034 1.2E-08 51.6 2.7 25 7-31 173-197 (330)
371 2vli_A Antibiotic resistance p 97.0 0.00033 1.1E-08 46.8 2.4 24 4-27 4-27 (183)
372 2gza_A Type IV secretion syste 97.0 0.00034 1.2E-08 52.2 2.8 25 6-30 176-200 (361)
373 1ixz_A ATP-dependent metallopr 97.0 0.00041 1.4E-08 49.0 3.0 23 7-29 51-73 (254)
374 2yyz_A Sugar ABC transporter, 97.0 0.00052 1.8E-08 51.2 3.6 24 7-30 31-54 (359)
375 3rlf_A Maltose/maltodextrin im 97.0 0.00053 1.8E-08 51.5 3.6 23 8-30 32-54 (381)
376 2p5t_B PEZT; postsegregational 97.0 0.00035 1.2E-08 49.5 2.6 25 4-28 31-55 (253)
377 2f6r_A COA synthase, bifunctio 97.0 0.00049 1.7E-08 49.6 3.3 24 4-27 74-97 (281)
378 2it1_A 362AA long hypothetical 97.0 0.00054 1.8E-08 51.1 3.6 24 7-30 31-54 (362)
379 2z0h_A DTMP kinase, thymidylat 97.0 0.00045 1.5E-08 46.7 3.0 22 7-28 2-23 (197)
380 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00053 1.8E-08 48.8 3.4 23 5-27 4-26 (260)
381 3b9q_A Chloroplast SRP recepto 97.0 0.00044 1.5E-08 50.4 3.0 21 7-27 102-122 (302)
382 1p9r_A General secretion pathw 97.0 0.00042 1.4E-08 52.8 3.0 23 7-29 169-191 (418)
383 1v43_A Sugar-binding transport 96.9 0.0006 2.1E-08 51.1 3.6 24 7-30 39-62 (372)
384 1gtv_A TMK, thymidylate kinase 96.9 0.00017 6E-09 49.5 0.7 21 7-27 2-22 (214)
385 1g29_1 MALK, maltose transport 96.9 0.00059 2E-08 51.1 3.6 24 7-30 31-54 (372)
386 1e6c_A Shikimate kinase; phosp 96.9 0.00054 1.9E-08 45.3 3.1 22 6-27 3-24 (173)
387 1jbk_A CLPB protein; beta barr 96.9 0.00055 1.9E-08 45.7 3.0 23 6-28 44-66 (195)
388 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00054 1.9E-08 47.5 3.0 22 7-28 25-46 (235)
389 2oap_1 GSPE-2, type II secreti 96.9 0.00048 1.6E-08 53.8 2.9 25 6-30 261-285 (511)
390 1uj2_A Uridine-cytidine kinase 96.9 0.00066 2.3E-08 48.0 3.4 24 4-27 21-44 (252)
391 3d31_A Sulfate/molybdate ABC t 96.9 0.00049 1.7E-08 51.1 2.7 24 7-30 28-51 (348)
392 2vp4_A Deoxynucleoside kinase; 96.9 0.00047 1.6E-08 48.1 2.4 24 5-28 20-43 (230)
393 2pez_A Bifunctional 3'-phospho 96.9 0.00065 2.2E-08 45.3 3.0 23 5-27 5-27 (179)
394 1in4_A RUVB, holliday junction 96.9 0.00058 2E-08 50.4 3.0 22 7-28 53-74 (334)
395 1iy2_A ATP-dependent metallopr 96.9 0.00061 2.1E-08 48.9 3.0 23 7-29 75-97 (278)
396 1zuh_A Shikimate kinase; alpha 96.9 0.00075 2.6E-08 44.5 3.2 21 7-27 9-29 (168)
397 1ltq_A Polynucleotide kinase; 96.8 0.00075 2.6E-08 48.9 3.4 22 6-27 3-24 (301)
398 3d3q_A TRNA delta(2)-isopenten 96.8 0.00067 2.3E-08 50.1 3.0 23 6-28 8-30 (340)
399 3gd7_A Fusion complex of cysti 96.8 0.0006 2E-08 51.4 2.8 23 7-29 49-71 (390)
400 1nij_A Hypothetical protein YJ 96.8 0.00055 1.9E-08 50.2 2.4 23 7-29 6-28 (318)
401 1cr0_A DNA primase/helicase; R 96.8 0.00064 2.2E-08 49.2 2.8 21 8-28 38-58 (296)
402 3kta_A Chromosome segregation 96.8 0.00072 2.5E-08 45.2 2.8 21 7-27 28-48 (182)
403 2og2_A Putative signal recogni 96.8 0.00074 2.5E-08 50.3 3.0 22 6-27 158-179 (359)
404 3nwj_A ATSK2; P loop, shikimat 96.8 0.00079 2.7E-08 47.6 3.0 23 5-27 48-70 (250)
405 2cvh_A DNA repair and recombin 96.8 0.0008 2.7E-08 46.3 3.0 21 7-27 22-42 (220)
406 2grj_A Dephospho-COA kinase; T 96.8 0.00096 3.3E-08 45.2 3.3 24 5-28 12-35 (192)
407 1oxx_K GLCV, glucose, ABC tran 96.8 0.00048 1.6E-08 51.3 1.9 24 7-30 33-56 (353)
408 2npi_A Protein CLP1; CLP1-PCF1 96.8 0.00071 2.4E-08 52.2 2.8 23 7-29 140-162 (460)
409 1lv7_A FTSH; alpha/beta domain 96.7 0.001 3.5E-08 47.1 3.4 24 5-28 45-68 (257)
410 1n0w_A DNA repair protein RAD5 96.7 0.00091 3.1E-08 46.7 3.0 22 7-28 26-47 (243)
411 1m7g_A Adenylylsulfate kinase; 96.7 0.00092 3.2E-08 45.9 3.0 23 5-27 25-47 (211)
412 2yhs_A FTSY, cell division pro 96.7 0.00087 3E-08 51.9 3.0 22 6-27 294-315 (503)
413 4dzz_A Plasmid partitioning pr 96.7 0.00015 5.1E-09 49.5 -1.1 65 53-122 76-143 (206)
414 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0031 1.1E-07 48.3 5.9 21 6-26 68-88 (457)
415 4eaq_A DTMP kinase, thymidylat 96.7 0.0013 4.6E-08 45.8 3.6 25 4-28 25-49 (229)
416 3bos_A Putative DNA replicatio 96.7 0.001 3.5E-08 46.3 3.0 24 5-28 52-75 (242)
417 2p65_A Hypothetical protein PF 96.7 0.00079 2.7E-08 44.8 2.3 24 5-28 43-66 (187)
418 2obl_A ESCN; ATPase, hydrolase 96.7 0.00097 3.3E-08 49.5 2.9 24 7-30 73-96 (347)
419 3gmt_A Adenylate kinase; ssgci 96.7 0.0012 4.1E-08 46.0 3.2 23 5-27 8-30 (230)
420 2w58_A DNAI, primosome compone 96.7 0.0011 3.9E-08 45.0 3.0 23 6-28 55-77 (202)
421 1svm_A Large T antigen; AAA+ f 96.7 0.001 3.6E-08 49.9 3.0 22 6-27 170-191 (377)
422 1tue_A Replication protein E1; 96.6 0.00084 2.9E-08 45.9 2.2 22 7-28 60-81 (212)
423 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0013 4.4E-08 42.7 3.0 19 8-26 26-44 (149)
424 3ake_A Cytidylate kinase; CMP 96.6 0.0015 5.2E-08 44.4 3.5 21 7-27 4-24 (208)
425 2qmh_A HPR kinase/phosphorylas 96.6 0.0013 4.4E-08 44.7 2.9 26 4-29 33-58 (205)
426 1p5z_B DCK, deoxycytidine kina 96.6 0.00097 3.3E-08 47.4 2.3 26 3-28 22-47 (263)
427 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0017 6E-08 51.1 3.9 25 7-31 49-73 (538)
428 3euj_A Chromosome partition pr 96.6 0.0013 4.4E-08 50.9 3.0 21 7-27 31-51 (483)
429 3ozx_A RNAse L inhibitor; ATP 96.5 0.0017 5.9E-08 51.0 3.7 25 7-31 27-51 (538)
430 3n70_A Transport activator; si 96.5 0.002 6.9E-08 41.4 3.3 26 4-29 23-48 (145)
431 1q3t_A Cytidylate kinase; nucl 96.5 0.0019 6.3E-08 45.2 3.3 24 4-27 15-38 (236)
432 3j16_B RLI1P; ribosome recycli 96.5 0.0019 6.6E-08 51.5 3.8 25 7-31 105-129 (608)
433 3b60_A Lipid A export ATP-bind 96.5 0.0017 5.9E-08 51.6 3.5 24 7-30 371-394 (582)
434 3b9p_A CG5977-PA, isoform A; A 96.5 0.0015 5.2E-08 47.2 2.9 24 5-28 54-77 (297)
435 1nlf_A Regulatory protein REPA 96.5 0.0014 4.9E-08 47.0 2.8 21 7-27 32-52 (279)
436 2dpy_A FLII, flagellum-specifi 96.5 0.0015 5E-08 50.1 2.9 24 7-30 159-182 (438)
437 3b5x_A Lipid A export ATP-bind 96.5 0.0019 6.4E-08 51.4 3.6 24 7-30 371-394 (582)
438 3h4m_A Proteasome-activating n 96.5 0.0016 5.6E-08 46.7 2.9 24 5-28 51-74 (285)
439 1njg_A DNA polymerase III subu 96.5 0.0017 5.9E-08 44.9 3.0 21 7-27 47-67 (250)
440 3t15_A Ribulose bisphosphate c 96.5 0.0018 6.1E-08 46.9 3.1 24 5-28 36-59 (293)
441 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0018 6.1E-08 45.8 3.1 24 5-28 39-62 (262)
442 2chg_A Replication factor C sm 96.4 0.0018 6.3E-08 44.2 3.0 22 7-28 40-61 (226)
443 3cf0_A Transitional endoplasmi 96.4 0.0017 5.9E-08 47.1 2.9 23 6-28 50-72 (301)
444 3qf7_A RAD50; ABC-ATPase, ATPa 96.4 0.0018 6.1E-08 48.5 3.0 19 8-26 26-44 (365)
445 2yl4_A ATP-binding cassette SU 96.4 0.0018 6.3E-08 51.6 3.3 24 7-30 372-395 (595)
446 3qf4_B Uncharacterized ABC tra 96.4 0.0019 6.7E-08 51.5 3.4 24 7-30 383-406 (598)
447 3zvl_A Bifunctional polynucleo 96.4 0.0018 6.1E-08 49.3 3.0 24 5-28 258-281 (416)
448 2h92_A Cytidylate kinase; ross 96.4 0.0022 7.5E-08 44.1 3.1 23 5-27 3-25 (219)
449 2dr3_A UPF0273 protein PH0284; 96.4 0.0019 6.4E-08 45.2 2.8 21 7-27 25-45 (247)
450 3bk7_A ABC transporter ATP-bin 96.4 0.0026 8.9E-08 50.8 3.8 25 7-31 119-143 (607)
451 2px0_A Flagellar biosynthesis 96.4 0.0019 6.6E-08 46.8 2.8 22 6-27 106-127 (296)
452 3ozx_A RNAse L inhibitor; ATP 96.4 0.0025 8.7E-08 50.1 3.6 25 7-31 296-320 (538)
453 1l8q_A Chromosomal replication 96.3 0.0021 7.1E-08 47.1 2.9 23 6-28 38-60 (324)
454 1vma_A Cell division protein F 96.3 0.0023 7.9E-08 46.6 3.0 22 6-27 105-126 (306)
455 3tmk_A Thymidylate kinase; pho 96.3 0.0028 9.7E-08 43.7 3.4 28 1-28 1-28 (216)
456 4a82_A Cystic fibrosis transme 96.3 0.0017 5.6E-08 51.7 2.4 24 7-30 369-392 (578)
457 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0031 1E-07 49.7 3.8 25 7-31 314-338 (538)
458 1c9k_A COBU, adenosylcobinamid 96.3 0.0025 8.4E-08 42.7 2.8 21 8-28 2-22 (180)
459 3bk7_A ABC transporter ATP-bin 96.3 0.0029 9.8E-08 50.5 3.7 25 7-31 384-408 (607)
460 1pzn_A RAD51, DNA repair and r 96.3 0.0023 7.7E-08 47.6 2.8 23 7-29 133-155 (349)
461 1sxj_E Activator 1 40 kDa subu 96.3 0.0022 7.6E-08 47.5 2.7 20 8-27 39-58 (354)
462 3qf4_A ABC transporter, ATP-bi 96.2 0.0023 8E-08 50.9 2.9 24 7-30 371-394 (587)
463 2qby_A CDC6 homolog 1, cell di 96.2 0.0025 8.5E-08 47.5 2.8 24 5-28 45-68 (386)
464 3syl_A Protein CBBX; photosynt 96.2 0.0028 9.4E-08 46.0 2.9 22 6-27 68-89 (309)
465 3tqf_A HPR(Ser) kinase; transf 96.2 0.0031 1.1E-07 41.8 2.8 24 5-28 16-39 (181)
466 3j16_B RLI1P; ribosome recycli 96.2 0.0036 1.2E-07 50.0 3.7 25 8-32 381-405 (608)
467 3exa_A TRNA delta(2)-isopenten 96.2 0.0039 1.3E-07 45.5 3.6 24 5-28 3-26 (322)
468 1fnn_A CDC6P, cell division co 96.2 0.003 1E-07 47.3 3.0 23 7-29 46-68 (389)
469 1d2n_A N-ethylmaleimide-sensit 96.2 0.0039 1.3E-07 44.5 3.5 25 4-28 63-87 (272)
470 4b4t_K 26S protease regulatory 96.2 0.003 1E-07 48.2 3.0 24 5-28 206-229 (428)
471 4b4t_M 26S protease regulatory 96.2 0.0036 1.2E-07 47.8 3.4 24 5-28 215-238 (434)
472 1ofh_A ATP-dependent HSL prote 96.2 0.0032 1.1E-07 45.6 3.0 24 5-28 50-73 (310)
473 1sxj_C Activator 1 40 kDa subu 96.1 0.003 1E-07 46.6 2.9 23 7-29 48-70 (340)
474 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0031 1E-07 46.3 2.9 24 6-29 46-69 (322)
475 3qks_A DNA double-strand break 96.1 0.0036 1.2E-07 42.7 3.0 19 8-26 26-44 (203)
476 2ocp_A DGK, deoxyguanosine kin 96.1 0.0039 1.3E-07 43.6 3.2 24 5-28 2-25 (241)
477 3foz_A TRNA delta(2)-isopenten 96.1 0.0047 1.6E-07 45.0 3.6 24 5-28 10-33 (316)
478 3a8t_A Adenylate isopentenyltr 96.1 0.0047 1.6E-07 45.5 3.6 23 6-28 41-63 (339)
479 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0041 1.4E-07 46.1 3.3 23 5-27 24-46 (359)
480 4fcw_A Chaperone protein CLPB; 96.1 0.0035 1.2E-07 45.5 3.0 22 7-28 49-70 (311)
481 4b4t_L 26S protease subunit RP 96.1 0.0035 1.2E-07 47.9 3.1 24 5-28 215-238 (437)
482 3co5_A Putative two-component 96.1 0.0019 6.6E-08 41.4 1.4 24 5-28 27-50 (143)
483 4f4c_A Multidrug resistance pr 96.1 0.0025 8.5E-08 55.4 2.4 23 7-29 1107-1129(1321)
484 3eie_A Vacuolar protein sortin 96.0 0.0039 1.3E-07 45.7 3.1 23 6-28 52-74 (322)
485 2axn_A 6-phosphofructo-2-kinas 96.0 0.0045 1.5E-07 48.5 3.5 24 4-27 34-57 (520)
486 1sxj_D Activator 1 41 kDa subu 96.0 0.004 1.4E-07 45.9 3.0 22 7-28 60-81 (353)
487 2r62_A Cell division protease 96.0 0.0017 5.8E-08 46.2 0.9 23 6-28 45-67 (268)
488 2qgz_A Helicase loader, putati 96.0 0.0045 1.5E-07 45.1 3.1 24 5-28 152-175 (308)
489 4edh_A DTMP kinase, thymidylat 96.0 0.0048 1.6E-07 42.5 3.0 24 4-27 5-28 (213)
490 2v1u_A Cell division control p 95.9 0.0036 1.2E-07 46.7 2.6 24 5-28 44-67 (387)
491 1tf7_A KAIC; homohexamer, hexa 95.9 0.0037 1.3E-07 49.1 2.7 19 8-26 42-60 (525)
492 4b4t_J 26S protease regulatory 95.9 0.0051 1.7E-07 46.4 3.3 24 5-28 182-205 (405)
493 3cr8_A Sulfate adenylyltranfer 95.9 0.0027 9.1E-08 50.1 1.8 24 6-29 370-393 (552)
494 3v9p_A DTMP kinase, thymidylat 95.9 0.0039 1.3E-07 43.4 2.4 23 5-27 25-47 (227)
495 2dhr_A FTSH; AAA+ protein, hex 95.9 0.0044 1.5E-07 48.2 2.9 24 6-29 65-88 (499)
496 2iw3_A Elongation factor 3A; a 95.9 0.0054 1.9E-07 51.4 3.5 24 7-30 463-486 (986)
497 3uk6_A RUVB-like 2; hexameric 95.9 0.0044 1.5E-07 46.1 2.8 23 6-28 71-93 (368)
498 2qp9_X Vacuolar protein sortin 95.9 0.0049 1.7E-07 45.9 3.0 23 6-28 85-107 (355)
499 3lda_A DNA repair protein RAD5 95.9 0.0044 1.5E-07 46.9 2.7 20 7-26 180-199 (400)
500 2z4s_A Chromosomal replication 95.9 0.0047 1.6E-07 47.4 2.9 23 6-28 131-153 (440)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=7.4e-39 Score=223.89 Aligned_cols=164 Identities=31% Similarity=0.536 Sum_probs=136.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
.+++||+|+|++|+|||||+++|..+.+...+.++.+..+ .+.+..++..+.+.+|||+|+++|...+..+++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 4679999999999999999999999999998888877444 666777888999999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|||++++++|+.+. .|+..+.. ..++.|++||+||+|+.. .+.++.+++.++++.++ ++|+++|
T Consensus 91 lv~di~~~~Sf~~i~-~~~~~i~~~~~~~~piilVgNK~Dl~~------------~r~V~~~e~~~~a~~~~-~~~~e~S 156 (216)
T 4dkx_A 91 VVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLAD------------KRQVSIEEGERKAKELN-VMFIETS 156 (216)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEEEB
T ss_pred EEeecchhHHHHHHH-HHHHHHHHhcCCCCeEEEEeeccchHh------------cCcccHHHHhhHHHHhC-CeeEEEe
Confidence 999999999999996 66666654 446899999999999876 46789999999999999 5899999
Q ss_pred cCCcCCHHHHHHHHHHHHhh
Q psy14754 161 AKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~ 180 (192)
|++|.||+++|+.|.+.+..
T Consensus 157 Aktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 157 AKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TTTTBSHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 2
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=5.2e-37 Score=210.31 Aligned_cols=183 Identities=57% Similarity=0.985 Sum_probs=159.0
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+..+||+++|++|+|||||+++|.++.+...+.++........+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46899999999999999999999999887777777766666667788899999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|+|++++.++..+...|+..+....++.|+++|+||+|+...............+.+..+++..+++.++..+++++||+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence 99999999999987689988888777999999999999987655555555555677888899999998885699999999
Q ss_pred CcCCHHHHHHHHHHHHhhhcccc
Q psy14754 163 SKEGVREVFETATRAALQVKKKK 185 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~~~~ 185 (192)
+|.|++++|+++.+.+.....++
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~~~k 185 (186)
T 1mh1_A 163 TQRGLKTVFDEAIRAVLCPPPVK 185 (186)
T ss_dssp TCTTHHHHHHHHHHHHSCCCC--
T ss_pred CccCHHHHHHHHHHHHhcccccC
Confidence 99999999999999998776554
No 3
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.5e-36 Score=210.79 Aligned_cols=180 Identities=90% Similarity=1.404 Sum_probs=158.4
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI 80 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 80 (192)
|+..++||+++|++|+|||||++++.+..+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 56788999999999999999999999999887777777766666677888889999999999999999999999999999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 81 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
++|||++++++++.+...|...+....++.|+++|+||+|+.........+.....+.+..+++..+++.++..+++++|
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999999877899988887789999999999999886665555555666778888999999998866899999
Q ss_pred cCCcCCHHHHHHHHHHHHhh
Q psy14754 161 AKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~ 180 (192)
|+++.|++++|++|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988753
No 4
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=8.3e-37 Score=214.03 Aligned_cols=182 Identities=51% Similarity=0.966 Sum_probs=138.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 46799999999999999999999998887777777766666677788889999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|||++++.+++.+...|...+....++.|+++|+||+|+.......+.......+.+..+++..+++.++..+++++||+
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 99999999999987689999888878999999999999988765555555555677888999999999886699999999
Q ss_pred CcCCHHHHHHHHHHHHhhhccc
Q psy14754 163 SKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+|.|++++|++|.+.+.+.+.+
T Consensus 192 ~g~gi~el~~~l~~~~~~~~~r 213 (214)
T 2j1l_A 192 LHDNVHAVFQEAAEVALSSRGR 213 (214)
T ss_dssp TTBSHHHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999876543
No 5
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-36 Score=210.81 Aligned_cols=182 Identities=84% Similarity=1.343 Sum_probs=154.4
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI 80 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 80 (192)
|...++||+++|++|+|||||+++|.+..+...+.++........+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 45678999999999999999999999999887777777666656667788889999999999999999999999999999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 81 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
++|+|++++.+++.+...|...+....++.|+++|+||+|+.......+.+.....+.+..+++..++..++..+++++|
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999999877899988887789999999999999876655555666666778888899999988866899999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhc
Q psy14754 161 AKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~ 182 (192)
|++|.|++++|++|.+.+...+
T Consensus 181 A~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987654
No 6
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=209.87 Aligned_cols=182 Identities=45% Similarity=0.871 Sum_probs=149.1
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+++|++|+|||||+++|.+..+...+.++....+...+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 97 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL 97 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence 46899999999999999999999998887777777766666667778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|||++++.++..+...|+..+....++.|+++|+||+|+.........+.....+.+..+++..+++.++..+++++||+
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 177 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL 177 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecC
Confidence 99999999999986689998888878999999999999987554444444334566778888999988886699999999
Q ss_pred CcCCHHHHHHHHHHHHhhhccc
Q psy14754 163 SKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
++.|++++|+++.+.+.+.+.+
T Consensus 178 ~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 178 TQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHhccccc
Confidence 9999999999999999877554
No 7
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-36 Score=208.83 Aligned_cols=177 Identities=53% Similarity=0.986 Sum_probs=155.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
..+||+++|++|+|||||+++|.+..+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 57899999999999999999999998887777777666666667777889999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
||+++++++..+...|+..+....++.|+++|+||+|+.........+.....+.+..+++.++++.++..+++++||++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 176 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALT 176 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCC
Confidence 99999999999876899988888789999999999999876555555555556778888999999988866899999999
Q ss_pred cCCHHHHHHHHHHHHhh
Q psy14754 164 KEGVREVFETATRAALQ 180 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~~ 180 (192)
+.|++++|++|.+.+..
T Consensus 177 g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 177 QKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988764
No 8
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=2e-36 Score=207.37 Aligned_cols=178 Identities=51% Similarity=0.973 Sum_probs=152.5
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||+++|.+..+...+.++....+...+.++...+.+.+||+||++.|...+..+++.+|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 46899999999999999999999999888777777776666666778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|||++++.+++.+...|...+....++.|+++|+||+|+..+......+.....+.+..+++.++++.++..+++++||+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 164 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 164 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeec
Confidence 99999999999886689888888778999999999999976543333333334467788889999998886799999999
Q ss_pred -CcCCHHHHHHHHHHHHhh
Q psy14754 163 -SKEGVREVFETATRAALQ 180 (192)
Q Consensus 163 -~~~gi~~~~~~i~~~~~~ 180 (192)
++.|++++|+.+.+.+.+
T Consensus 165 ~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 165 QSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TBHHHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 689999999999998764
No 9
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=6e-36 Score=206.61 Aligned_cols=172 Identities=48% Similarity=0.861 Sum_probs=153.0
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||+++|.+..+...+.++....+...+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 35799999999999999999999999988877788777777777888899999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|||++++.++..+...|...+....++.|+++|+||+|+..+. .+.+..+++..+++.++..+++++||+
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG----------SDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT----------TTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC----------CCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 9999999999998778999999888899999999999997632 256778888999999886449999999
Q ss_pred CcCCHHHHHHHHHHHHhhhccc
Q psy14754 163 SKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+|.|++++|+++.+.+...+..
T Consensus 171 ~~~gi~~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFSNKPV 192 (194)
T ss_dssp TTBSHHHHHHHHHHHHHCSCC-
T ss_pred CCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876543
No 10
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=2.1e-36 Score=211.94 Aligned_cols=182 Identities=45% Similarity=0.829 Sum_probs=155.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 35799999999999999999999999998888888877776667778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|||++++.++......|+..+....++.|+++|+||+|+..+............+.+..+++..+++.++..+++++||+
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence 99999999999955689999998888999999999999987654444444455677889999999999985599999999
Q ss_pred CcCC-HHHHHHHHHHHHhhhccc
Q psy14754 163 SKEG-VREVFETATRAALQVKKK 184 (192)
Q Consensus 163 ~~~g-i~~~~~~i~~~~~~~~~~ 184 (192)
++.| ++++|+++.+.+......
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC----
T ss_pred CCcccHHHHHHHHHHHHhccCcC
Confidence 9998 999999999999877654
No 11
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=5e-36 Score=208.62 Aligned_cols=176 Identities=58% Similarity=1.022 Sum_probs=155.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||++++.++.+...+.++........+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 45799999999999999999999999988777777777767677778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|||++++.+++.+...|...+....++.|+++|+||+|+.......+.......+.+..+++..+++.++..+++++||+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 187 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence 99999999999987689999988888999999999999998776666666666777889999999999997789999999
Q ss_pred CcCCHHHHHHHHHHHH
Q psy14754 163 SKEGVREVFETATRAA 178 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~ 178 (192)
+|+|++++|+++.+.+
T Consensus 188 ~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 188 TQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCTTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 12
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=5.3e-36 Score=208.58 Aligned_cols=178 Identities=51% Similarity=0.973 Sum_probs=152.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+++|++|+|||||+++|.+..+...+.++....+...+.+++..+.+.+|||||++.|...+..+++.+|++|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 35799999999999999999999999988777777776666666777888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|||++++.++..+...|...+....++.|+++|+||+|+..+......+.....+.+..+++..+++.++..+++++||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 99999999999886689888888778999999999999976543333333334567788889999988876699999999
Q ss_pred -CcCCHHHHHHHHHHHHhh
Q psy14754 163 -SKEGVREVFETATRAALQ 180 (192)
Q Consensus 163 -~~~gi~~~~~~i~~~~~~ 180 (192)
++.|++++|+.+.+.+.+
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999998764
No 13
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.4e-35 Score=207.49 Aligned_cols=176 Identities=48% Similarity=0.892 Sum_probs=148.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
..+||+++|++|+|||||+++|.++.+...+.++....+...+.+++..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 87 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 87 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEE
Confidence 57999999999999999999999998887777777766666667788889999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
||++++++++.+.+.|+..+....++.|+++|+||+|+......... ....+..+++..++..++..+++++||++
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 88 FSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD----HTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT----CSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc----ccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 99999999999876899999888789999999999999764321111 12345778888898888866999999999
Q ss_pred cCCHHHHHHHHHHHHhhhcc
Q psy14754 164 KEGVREVFETATRAALQVKK 183 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~~~~~ 183 (192)
+.|++++|+++.+.+...++
T Consensus 164 g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHhhhhh
Confidence 99999999999999987653
No 14
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=206.62 Aligned_cols=176 Identities=28% Similarity=0.450 Sum_probs=140.4
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+++|++|+|||||+++|.+..+...+.++....+......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 36899999999999999999999999988887777776666666667778899999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|||++++.+++.+. .|...+.... .+.|+++|+||+|+.. .+.+...++..++..++ ++++++|
T Consensus 102 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~S 167 (201)
T 3oes_A 102 VYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSP------------EREVQAVEGKKLAESWG-ATFMESS 167 (201)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEECC
T ss_pred EEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCcc------------ccccCHHHHHHHHHHhC-CeEEEEe
Confidence 99999999999885 6777766542 4789999999999975 35677788888998888 4999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhccc--cccccccC
Q psy14754 161 AKSKEGVREVFETATRAALQVKKK--KKGRCRLL 192 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~~~--~~~~c~~~ 192 (192)
|+++.|++++|++|.+.+.+.+.. ++.+|.+|
T Consensus 168 a~~~~~v~~l~~~l~~~i~~~~~~~~~~~~c~l~ 201 (201)
T 3oes_A 168 ARENQLTQGIFTKVIQEIARVENSYGQERRCHLM 201 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhhhccccccccC
Confidence 999999999999999999887654 34568876
No 15
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.6e-35 Score=202.33 Aligned_cols=176 Identities=51% Similarity=0.884 Sum_probs=133.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||++++.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 46899999999999999999999999887776666655544444456667788999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|+|++++.+++.+.+.|...+....++.|+++|+||+|+......... ......+..+++.++++.++..+++++||+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFID--HPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHH--C--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccc--cccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999876899999887778999999999999765332111 122344677888889988885699999999
Q ss_pred CcCCHHHHHHHHHHHHhh
Q psy14754 163 SKEGVREVFETATRAALQ 180 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~ 180 (192)
++.|++++|+++.+.+..
T Consensus 164 ~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TCTTHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988764
No 16
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=7.5e-35 Score=200.04 Aligned_cols=164 Identities=31% Similarity=0.551 Sum_probs=140.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||+++|.+..+...+.++...........++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999999988877777777767777788999999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|+|++++.++..+. .|...+.... .+.|+++|+||+|+.. +....+....++..++ ++++++|
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~S 146 (189)
T 4dsu_A 82 VFAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLPS-------------RTVDTKQAQDLARSYG-IPFIETS 146 (189)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTSSS-------------CSSCHHHHHHHHHHHT-CCEEECC
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccCcc-------------cccCHHHHHHHHHHcC-CeEEEEe
Confidence 99999999998885 6666665533 4899999999999864 4456777888888888 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhh
Q psy14754 161 AKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~ 181 (192)
|++|.|++++|++|.+.+...
T Consensus 147 a~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 147 AKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 17
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.5e-34 Score=196.31 Aligned_cols=168 Identities=32% Similarity=0.478 Sum_probs=145.0
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||+++|.++.+...+.++........+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 36899999999999999999999998888877777777777777888889999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|||++++++++.+. .|...+.... ++.|+++|+||+|+.. .+.+..+++..+++.++ ++++++|
T Consensus 84 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~S 149 (181)
T 3t5g_A 84 VYSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHM------------ERVISYEEGKALAESWN-AAFLESS 149 (181)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHC----CCEEEEEECTTCTT------------TCCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchh------------cceecHHHHHHHHHHhC-CcEEEEe
Confidence 99999999999885 5776665543 4799999999999965 36677888999999998 4999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhccc
Q psy14754 161 AKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
|+++.|++++|+++.+.+...+..
T Consensus 150 a~~~~~v~~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 150 AKENQTAVDVFRRIILEAEKMDGA 173 (181)
T ss_dssp TTSHHHHHHHHHHHHHHHHTC---
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999887644
No 18
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.6e-34 Score=197.88 Aligned_cols=165 Identities=19% Similarity=0.338 Sum_probs=140.9
Q ss_pred cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...++||+++|++|+|||||+++++++.+...+.++.. .+...+.+++..+.+.+|||+|++.+. +++.+|+++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 35789999999999999999999999998877766643 445677888999999999999998876 667899999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC 159 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (192)
+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.... .+.+..+++.+++..++..+++++
T Consensus 91 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------~~~v~~~~~~~~~~~~~~~~~~e~ 159 (184)
T 3ihw_A 91 FVFSLEDEISFQTVY-NYFLRLCSFRNASEVPMVLVGTQDAISAAN----------PRVIDDSRARKLSTDLKRCTYYET 159 (184)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHTTSCGGGSCEEEEEECTTCBTTB----------CCCSCHHHHHHHHHHTTTCEEEEE
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc----------ccccCHHHHHHHHHHcCCCeEEEe
Confidence 999999999999985 6888877653 579999999999996422 366788889999999876799999
Q ss_pred ccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 160 SAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 160 Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
||+++.|++++|+++.+.+...++
T Consensus 160 Sa~~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 160 CATYGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999887654
No 19
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.2e-34 Score=195.31 Aligned_cols=163 Identities=34% Similarity=0.549 Sum_probs=140.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
.++||+++|++|+|||||+++|.++.+...+.++..........+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 57899999999999999999999998887777777766666667788889999999999999999988899999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 84 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|++++.+++.+. .|...+... .++.|+++|+||+|+.. .+.+..++...+++.++..+++++||
T Consensus 82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 82 YSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLED------------ERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhCcCCCcEEEEEECccccc------------cccCCHHHHHHHHHHccCCcEEEecC
Confidence 9999999999885 566655543 35899999999999975 24566788888888885579999999
Q ss_pred CCcCCHHHHHHHHHHHHh
Q psy14754 162 KSKEGVREVFETATRAAL 179 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~ 179 (192)
++|.|+++++++|.+.+.
T Consensus 149 ~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 149 KSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TTTBSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998774
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=196.05 Aligned_cols=169 Identities=31% Similarity=0.590 Sum_probs=144.5
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 3569999999999999999999999988776666665444 456677888899999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|+|++++.++..+. .|+..+....++.|+++|+||+|+.. .+.....+...++..++ ++++++||
T Consensus 87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa 152 (181)
T 3tw8_B 87 VVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPE------------RKVVETEDAYKFAGQMG-IQLFETSA 152 (181)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CCEEECBT
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCch------------hcccCHHHHHHHHHHcC-CeEEEEEC
Confidence 999999999999884 78888888888899999999999876 34566778888888888 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhcccc
Q psy14754 162 KSKEGVREVFETATRAALQVKKKK 185 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~~~ 185 (192)
++|.|++++|++|.+.+.+.++.+
T Consensus 153 ~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 153 KENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp TTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998876543
No 21
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.2e-34 Score=196.31 Aligned_cols=171 Identities=32% Similarity=0.492 Sum_probs=144.2
Q ss_pred cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
+...+||+++|++|+|||||+++|.+..+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 45689999999999999999999999988877777777666666778888899999999999999999988999999999
Q ss_pred EEEECCChhhhhchhhhhHHHH-hhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEV-KHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC 159 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~-~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (192)
+|+|+++++++..+. .|+..+ ... ..+.|+++|+||+|+.. .+.+..++...++...+ ++++++
T Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~ 151 (181)
T 2fn4_A 86 LVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLES------------QRQVPRSEASAFGASHH-VAYFEA 151 (181)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGG------------GCCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc------------ccccCHHHHHHHHHHcC-CeEEEe
Confidence 999999999998885 555554 333 34899999999999975 24566777888888877 599999
Q ss_pred ccCCcCCHHHHHHHHHHHHhhhccccc
Q psy14754 160 SAKSKEGVREVFETATRAALQVKKKKK 186 (192)
Q Consensus 160 Sa~~~~gi~~~~~~i~~~~~~~~~~~~ 186 (192)
||+++.|++++|++|.+.+.+.++...
T Consensus 152 Sa~~~~gv~~l~~~l~~~~~~~~~~~~ 178 (181)
T 2fn4_A 152 SAKLRLNVDEAFEQLVRAVRKYQEQEL 178 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHTTC--
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999987665443
No 22
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=194.43 Aligned_cols=168 Identities=27% Similarity=0.362 Sum_probs=128.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc--ccccccccCCCCCEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED--YDRLRPLSYPDTDVI 80 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~~~~ 80 (192)
...+||+++|++|+|||||+++|.+..+...+.+...+.....+.+++..+.+.+||+||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 457999999999999999999999988766544444444556667888889999999999887 455566788899999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754 81 LMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
++|||++++.+++.+. .|...+... .++.|+++|+||+|+... +.+..++...++..++ +++++
T Consensus 82 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~ 147 (175)
T 2nzj_A 82 VIVYSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARC------------REVSVEEGRACAVVFD-CKFIE 147 (175)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCTTT------------CCSCHHHHHHHHHHHT-SEEEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhccc------------cccCHHHHHHHHHHcC-CeEEE
Confidence 9999999999999885 677666554 348999999999999763 4466677778888777 59999
Q ss_pred eccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754 159 CSAKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+||++|.|++++|++|.+.+...++.
T Consensus 148 ~Sa~~g~gi~~l~~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 148 TSATLQHNVAELFEGVVRQLRLRRRD 173 (175)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999998776544
No 23
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=196.41 Aligned_cols=163 Identities=27% Similarity=0.417 Sum_probs=137.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+++|++|+|||||+++|.++.+...+.++....+.....+++..+.+.+|||||++.+... ..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 4679999999999999999999999998877777777666666778888999999999999988774 568889999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
|||++++++++.+. .|+..+.... ++.|+++|+||+|+.. .+.+..+++.++++.++ +++++
T Consensus 98 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e 163 (187)
T 3c5c_A 98 VYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQ------------YRQVTKAEGVALAGRFG-CLFFE 163 (187)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGGG------------GCSSCHHHHHHHHHHHT-CEEEE
T ss_pred EEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchhh------------cCccCHHHHHHHHHHcC-CcEEE
Confidence 99999999999885 6877776543 5899999999999965 25567788889998888 59999
Q ss_pred ecc-CCcCCHHHHHHHHHHHHhh
Q psy14754 159 CSA-KSKEGVREVFETATRAALQ 180 (192)
Q Consensus 159 ~Sa-~~~~gi~~~~~~i~~~~~~ 180 (192)
+|| +++.|++++|+.|.+.+.+
T Consensus 164 ~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 164 VSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred EeecCccccHHHHHHHHHHHHhh
Confidence 999 8999999999999988753
No 24
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=4.9e-34 Score=192.67 Aligned_cols=165 Identities=31% Similarity=0.551 Sum_probs=138.9
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCE
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDV 79 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 79 (192)
|...++||+++|++|+|||||+++|.++.+...+.++.+... .....++...+.+.+||+||++.+...+..+++.+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1r2q_A 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA 81 (170)
T ss_dssp CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence 345789999999999999999999999888776655554433 4556778888999999999999999999999999999
Q ss_pred EEEEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754 80 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
+++|+|++++.+++.+. .|+..+... .++.|+++|+||+|+... +....++...++...+ +++++
T Consensus 82 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~ 147 (170)
T 1r2q_A 82 AIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANK------------RAVDFQEAQSYADDNS-LLFME 147 (170)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEE
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCccc------------cccCHHHHHHHHHHcC-CeEEE
Confidence 99999999999998885 676666554 468999999999998652 4456677888888877 59999
Q ss_pred eccCCcCCHHHHHHHHHHHHh
Q psy14754 159 CSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
+||++|.|++++|++|.+.+.
T Consensus 148 ~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 148 TSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp CCTTTCTTHHHHHHHHHHTSC
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999988764
No 25
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=2.7e-34 Score=193.53 Aligned_cols=164 Identities=34% Similarity=0.542 Sum_probs=138.4
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+.++||+++|++|+|||||++++.+..+...+.++........+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 35799999999999999999999999887777777776666667788888999999999999998888888999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|+|+++++++..+. .|+..+.... .+.|+++|+||+|+... +.+..++...+++.++ ++++++|
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 147 (168)
T 1u8z_A 82 VFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRADQWN-VNYVETS 147 (168)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECC
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECcccccc------------CccCHHHHHHHHHHcC-CeEEEeC
Confidence 99999999998884 6766666544 38999999999999752 4466778888888887 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhh
Q psy14754 161 AKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~ 180 (192)
|+++.|++++|+++.+.+.+
T Consensus 148 a~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 148 AKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 26
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2.7e-33 Score=192.57 Aligned_cols=164 Identities=32% Similarity=0.608 Sum_probs=140.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+...+..+.+.+||+||++.+...+..+++.+|++++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 568999999999999999999999988776666655433 4556677888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+.. .+.+..++..++++.++ ++++++||
T Consensus 101 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa 166 (189)
T 2gf9_A 101 MYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLED------------ERVVPAEDGRRLADDLG-FEFFEASA 166 (189)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEECBT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccc------------ccCCCHHHHHHHHHHcC-CeEEEEEC
Confidence 99999999998885 6877776654 5899999999999965 24566778888888888 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy14754 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
+++.|++++|++|.+.+.+.
T Consensus 167 ~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 167 KENINVKQVFERLVDVICEK 186 (189)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 27
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1e-33 Score=193.56 Aligned_cols=164 Identities=34% Similarity=0.527 Sum_probs=144.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+++|++|+|||||+++|.+..+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 35799999999999999999999999888888888777777777888999999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|+|++++.+++.+. .|...+... ..+.|+++|+||+|+.. .+.+..+++..+++.++ ++++++|
T Consensus 96 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~S 161 (183)
T 3kkq_A 96 VYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMH------------LRKVTRDQGKEMATKYN-IPYIETS 161 (183)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCST------------TCCSCHHHHHHHHHHHT-CCEEEEB
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCCchh------------ccCcCHHHHHHHHHHhC-CeEEEec
Confidence 99999999999985 666666442 35899999999999976 35677888899999988 6999999
Q ss_pred cC-CcCCHHHHHHHHHHHHhh
Q psy14754 161 AK-SKEGVREVFETATRAALQ 180 (192)
Q Consensus 161 a~-~~~gi~~~~~~i~~~~~~ 180 (192)
|+ ++.|++++|++|.+.+.+
T Consensus 162 a~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 162 AKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CSSSCBSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 99 999999999999988764
No 28
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=7.4e-34 Score=191.51 Aligned_cols=164 Identities=32% Similarity=0.567 Sum_probs=139.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||+++|.+..+...+.++.+... ...+..++....+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4689999999999999999999999988777666655333 555667788899999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|+|++++.+++.+. .|+..+....++.|+++|+||+|+... +.+..++...+++.++ ++++++||
T Consensus 83 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 148 (168)
T 1z2a_A 83 LVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD------------SCIKNEEAEGLAKRLK-LRFYRTSV 148 (168)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEEEECBT
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CeEEEEec
Confidence 999999999998885 577777665578999999999999752 4466777888888887 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhh
Q psy14754 162 KSKEGVREVFETATRAALQ 180 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~ 180 (192)
+++.|+++++++|.+.+.+
T Consensus 149 ~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 149 KEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTTBSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999988764
No 29
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=4.6e-34 Score=195.31 Aligned_cols=167 Identities=31% Similarity=0.582 Sum_probs=114.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 479999999999999999999999888776666665443 4556678888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+... +.+..+++..+++.++ ++++++||
T Consensus 87 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 152 (183)
T 2fu5_C 87 VYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDK------------RQVSKERGEKLALDYG-IKFMETSA 152 (183)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSC------------CCSCHHHHHHHHHHHT-CEEEECCC
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccCCcc------------CcCCHHHHHHHHHHcC-CeEEEEeC
Confidence 99999999998885 6877776653 57999999999999762 4566778888888888 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhccc
Q psy14754 162 KSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+++.|++++|++|.+.+.+...+
T Consensus 153 ~~~~~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 153 KANINVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998876543
No 30
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.2e-33 Score=194.65 Aligned_cols=167 Identities=30% Similarity=0.571 Sum_probs=139.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 4679999999999999999999999988777666655433 456677888899999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|+|++++++++.+. .|+..+... .++.|+++|+||+|+.. .+.+..++...+++.++ ++++++|
T Consensus 99 ~v~d~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~S 164 (191)
T 2a5j_A 99 LVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLES------------RRDVKREEGEAFAREHG-LIFMETS 164 (191)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEEEC
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCC------------ccccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999999885 677777654 35899999999999965 24566778888888887 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 161 AKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
|+++.|++++|++|.+.+.+..+
T Consensus 165 a~~~~gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 165 AKTACNVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887543
No 31
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.1e-34 Score=197.65 Aligned_cols=168 Identities=29% Similarity=0.541 Sum_probs=137.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 3578999999999999999999999988776666655433 556677888899999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.. .+.+..+++.++++.++..+++++|
T Consensus 107 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~------------~~~v~~~~~~~~~~~~~~~~~~~~S 173 (201)
T 2hup_A 107 LAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSE------------LREVSLAEAQSLAEHYDILCAIETS 173 (201)
T ss_dssp EEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCcccc------------ccccCHHHHHHHHHHcCCCEEEEEe
Confidence 999999999999885 7887777654 6899999999999975 2456678888898888844999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 161 AKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
|+++.|++++|++|.+.+.+..+
T Consensus 174 A~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 174 AKDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999886544
No 32
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.1e-33 Score=190.93 Aligned_cols=165 Identities=32% Similarity=0.593 Sum_probs=136.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||++++.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 4689999999999999999999999988776666665443 556677888899999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY 156 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (192)
+|+|++++.+++.+. .|...+.... .+.|+++|+||+|+.. +....++...+++.....++
T Consensus 85 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~ 150 (177)
T 1wms_A 85 LTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISE-------------RQVSTEEAQAWCRDNGDYPY 150 (177)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-------------CSSCHHHHHHHHHHTTCCCE
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCcccc-------------cccCHHHHHHHHHhcCCceE
Confidence 999999999998884 6777665432 5789999999999863 34567778888875555799
Q ss_pred EEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 157 LECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+++||+++.|++++|+++.+.+.+.
T Consensus 151 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 151 FETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999988754
No 33
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=6.3e-34 Score=195.02 Aligned_cols=167 Identities=34% Similarity=0.533 Sum_probs=143.5
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+++|++|+|||||+++|.+..+...+.++........+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 35799999999999999999999999888777777777666667788888999999999999999888889999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCC--CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCP--NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|+|+++++++..+. .|+..+..... +.|+++|+||+|+... +.+..++...+++.++ ++++++|
T Consensus 96 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 161 (187)
T 2a9k_A 96 VFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRAEQWN-VNYVETS 161 (187)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHCCTTCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------CccCHHHHHHHHHHcC-CeEEEeC
Confidence 99999999998884 67666665443 8999999999999652 4466778888888888 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 161 AKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
|+++.|++++|++|.+.+.+.+.
T Consensus 162 a~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 162 AKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999876553
No 34
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=6.5e-34 Score=193.76 Aligned_cols=165 Identities=19% Similarity=0.342 Sum_probs=136.0
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||+++|.++.+.. +.++....+...+.+++..+.+.+|||||++. ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 358999999999999999999999998876 56666666666777888889999999999876 346678999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
|||++++++++.+. .|...+... .++.|+++|+||+|+.... .+.+..+++.+++..++.+++++
T Consensus 79 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~v~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2iwr_A 79 VFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRISASS----------PRVVGDARARALXADMKRCSYYE 147 (178)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB----------CCCSCHHHHHHHHHHHSSEEEEE
T ss_pred EEECcCHHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccccccc----------cCcCCHHHHHHHHHhhcCCeEEE
Confidence 99999999999885 555444332 2579999999999995321 35677888888888775579999
Q ss_pred eccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754 159 CSAKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+||++|.|++++|+++.+.+...++.
T Consensus 148 ~Sa~~~~~i~~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 148 TXATYGLNVDRVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998876554
No 35
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.3e-34 Score=198.42 Aligned_cols=164 Identities=29% Similarity=0.491 Sum_probs=138.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+++|++|+|||||+++|.++.+...+.++....+......+...+.+.+|||||++.+...+..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 35799999999999999999999999887776666665555566778888999999999999998888888899999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh---CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC 159 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (192)
|||++++.+++.+. .|+..+... .++.|+++|+||+|+.. +.+..++...++..++ ++++++
T Consensus 86 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~ 150 (199)
T 2gf0_A 86 VFSVTSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDETQ-------------REVDTREAQAVAQEWK-CAFMET 150 (199)
T ss_dssp EEETTCHHHHHTTH-HHHHHHHHHHSCGGGSCEEEEEECTTCSS-------------CSSCHHHHHHHHHHHT-CEEEEC
T ss_pred EEECcCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCCc-------------cccCHHHHHHHHHHhC-CeEEEE
Confidence 99999999998885 455555442 24789999999999865 3355677777888877 599999
Q ss_pred ccCCcCCHHHHHHHHHHHHhhh
Q psy14754 160 SAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 160 Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
||+++.|++++|++|.+.+..+
T Consensus 151 Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 151 SAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp BTTTTBSHHHHHHHHHHHCSSS
T ss_pred ecCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999988765
No 36
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2.2e-33 Score=189.64 Aligned_cols=164 Identities=28% Similarity=0.585 Sum_probs=132.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
..++||+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 4679999999999999999999999988776666665444 345566778889999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+... +.+..++...+++.++ .+++++|
T Consensus 84 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 149 (170)
T 1z08_A 84 LVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKE------------RHVSIQEAESYAESVG-AKHYHTS 149 (170)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEEB
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEec
Confidence 999999999998885 6776665543 47999999999999762 4566778888888887 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhh
Q psy14754 161 AKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~ 180 (192)
|+++.|++++|++|.+.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 150 AKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999988764
No 37
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=7.6e-34 Score=197.61 Aligned_cols=165 Identities=33% Similarity=0.536 Sum_probs=143.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+|+|++|+|||||+++|.+..+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 45789999999999999999999999888777777777666677788888999999999999999888888999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCC--CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCP--NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|||+++++++..+. .|+..+..... +.|+++|+||+|+... +.+..+++..++..++ ++++++|
T Consensus 92 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 157 (206)
T 2bov_A 92 VFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRAEQWN-VNYVETS 157 (206)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEEC
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccCcccc------------ccccHHHHHHHHHHhC-CeEEEEe
Confidence 99999999998884 67777766553 8999999999999762 4466778888888887 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhh
Q psy14754 161 AKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~ 181 (192)
|++|.|++++|++|.+.+...
T Consensus 158 a~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999998775
No 38
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.8e-33 Score=189.44 Aligned_cols=162 Identities=26% Similarity=0.355 Sum_probs=117.2
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
.+||+++|++|+|||||++++.+...... .++.+......+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 57999999999999999999997765443 33334444556678899999999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754 85 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|++++++++.+. .|...+... .++.|+++|+||+|+.+ .+.+..++...++..++ .+++++||+
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (166)
T 3q72_A 81 SVTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVR------------SREVSVDEGRACAVVFD-CKFIETSAA 146 (166)
T ss_dssp ETTCHHHHHHHH-HHHHHHHHCC---CCCEEEEEECTTCCS------------SCCSCHHHHHHHHHHTT-CEEEECBGG
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEecccccc------------ccccCHHHHHHHHHHhC-CcEEEeccC
Confidence 999999999885 566655543 35899999999999976 35577788888888888 599999999
Q ss_pred CcCCHHHHHHHHHHHHhhh
Q psy14754 163 SKEGVREVFETATRAALQV 181 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~ 181 (192)
+|.|++++|+++.+.+..+
T Consensus 147 ~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 147 LHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp GTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999988765
No 39
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.8e-33 Score=191.83 Aligned_cols=168 Identities=31% Similarity=0.504 Sum_probs=142.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 88 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 88 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEE
Confidence 579999999999999999999999988777666655433 5566778888899999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.++..+. .|+..+.... ++.|+++|+||+|+... +.+...++..++...+ ++++++||
T Consensus 89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 154 (186)
T 2bme_A 89 VYDITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDAD------------REVTFLEASRFAQENE-LMFLETSA 154 (186)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEecC
Confidence 99999999998885 6776666543 58999999999999652 4466777888888887 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhcccc
Q psy14754 162 KSKEGVREVFETATRAALQVKKKK 185 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~~~ 185 (192)
+++.|++++|+++.+.+.+.....
T Consensus 155 ~~~~gi~~l~~~l~~~~~~~~~~~ 178 (186)
T 2bme_A 155 LTGENVEEAFVQCARKILNKIESG 178 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999998765443
No 40
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-33 Score=190.47 Aligned_cols=165 Identities=29% Similarity=0.548 Sum_probs=139.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
.++||+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 478999999999999999999999988776666655443 4556778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.++..+. .|+..+.... ++.|+++|+||+|+..... .+.+..++...++..++ ++++++||
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~-~~~~~~Sa 150 (170)
T 1ek0_A 82 VYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDXLQEGG---------ERKVAREEGEKLAEEKG-LLFFETSA 150 (170)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGSSC---------CCCSCHHHHHHHHHHHT-CEEEECCT
T ss_pred EEecCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCcccccc---------ccCCCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999998885 5776666543 6899999999999976422 25567778888888877 59999999
Q ss_pred CCcCCHHHHHHHHHHHHh
Q psy14754 162 KSKEGVREVFETATRAAL 179 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~ 179 (192)
+++.|++++|++|.+.+.
T Consensus 151 ~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 151 KTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp TTCTTHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 41
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-33 Score=189.66 Aligned_cols=167 Identities=30% Similarity=0.587 Sum_probs=130.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI 80 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 80 (192)
...+||+++|++|+|||||+++|.+..+.. .+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 457999999999999999999999988753 3445444433 33446788889999999999999999999999999999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy14754 81 LMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC 159 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (192)
++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+..++...+++.++ ++++++
T Consensus 88 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 153 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAHE------------RVVKREDGEKLAKEYG-LPFMET 153 (180)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECCSTTSC------------CCSCHHHHHHHHHHHT-CCEEEC
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CeEEEE
Confidence 9999999999998884 6777776654 58999999999999763 4566777888888877 599999
Q ss_pred ccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 160 SAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 160 Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
||+++.|++++|+++.+.+.+.+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 154 SAKTGLNVDLAFTAIAKELKRRSM 177 (180)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC---
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999998876543
No 42
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.7e-33 Score=191.08 Aligned_cols=166 Identities=34% Similarity=0.593 Sum_probs=139.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||+++|.+..+...+.++.+... ...+.++...+.+.+||+||++.+...+..+++.+|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 4579999999999999999999999988776656555433 455667888899999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+.. .+.+..++...+++.++ ++++++|
T Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~S 155 (181)
T 2efe_B 90 IVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLD------------ARKVTAEDAQTYAQENG-LFFMETS 155 (181)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTT------------TCCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCcccc------------cccCCHHHHHHHHHHcC-CEEEEEE
Confidence 999999999988875 6777666554 5899999999999965 24566778888888887 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhc
Q psy14754 161 AKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~ 182 (192)
|+++.|++++|++|.+.+...+
T Consensus 156 a~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 156 AKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SSSCTTHHHHHHHHHHTCC---
T ss_pred CCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999886654
No 43
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=6.8e-34 Score=193.56 Aligned_cols=168 Identities=29% Similarity=0.460 Sum_probs=139.0
Q ss_pred cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECC-eEEEEEEEeCCCCCcccccccccCCCCCE
Q psy14754 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDS-KQVELALWDTAGQEDYDRLRPLSYPDTDV 79 (192)
Q Consensus 2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 79 (192)
...++||+++|++|+|||||+++|.+..+...+.++.+ +.....+.+.+ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35689999999999999999999999887765555554 33345556665 67899999999999999999999999999
Q ss_pred EEEEEECCChhhhhchhhhhHHHHhhhC---CCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754 80 ILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA 155 (192)
Q Consensus 80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (192)
+++|+|++++.+++.+. .|+..+.... .+.| +++|+||+|+.. .+.+..++...+++.++ ++
T Consensus 83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~ 148 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEH------------MRTIKPEKHLRFCQENG-FS 148 (178)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGG------------GCSSCHHHHHHHHHHHT-CE
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEcccccc------------ccccCHHHHHHHHHHcC-Cc
Confidence 99999999999998884 7777776532 2456 899999999965 24566778888888887 59
Q ss_pred EEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 156 YLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
++++||+++.|++++|++|.+.+.+.+.
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 149 SHFVSAKTGDSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999877654
No 44
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=4e-33 Score=191.76 Aligned_cols=167 Identities=32% Similarity=0.555 Sum_probs=131.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+.++||+++|.+|+|||||+++|.+..+...+.++........+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 35799999999999999999999999887776676666666667778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|+|+++..++..+ ..|...+.... .+.|+++|+||+|+.. +....++..++++.++ ++++++|
T Consensus 99 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~S 163 (190)
T 3con_A 99 VFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPT-------------RTVDTKQAHELAKSYG-IPFIETS 163 (190)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC-------------CCSCHHHHHHHHHHHT-CCEEECC
T ss_pred EEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCc-------------ccCCHHHHHHHHHHcC-CeEEEEe
Confidence 9999999998888 46777766543 3799999999999865 2355677888888887 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhccc
Q psy14754 161 AKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
|+++.|+++++++|.+.+.+.+.+
T Consensus 164 a~~~~gi~~l~~~l~~~~~~~~~~ 187 (190)
T 3con_A 164 AKTRQGVEDAFYTLVREIRQYRMK 187 (190)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998876544
No 45
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-33 Score=194.65 Aligned_cols=166 Identities=27% Similarity=0.571 Sum_probs=141.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 104 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 468999999999999999999999988776666655433 4566778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+.+..+++..++...+ ++++++||
T Consensus 105 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~Sa 170 (201)
T 2ew1_A 105 TYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAE------------RREVSQQRAEEFSEAQD-MYYLETSA 170 (201)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGG------------GCSSCHHHHHHHHHHHT-CCEEECCT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc------------ccccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999884 7887777654 4789999999999965 24566777888888777 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhcc
Q psy14754 162 KSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
++|.|++++|++|.+.+.+..+
T Consensus 171 ~~g~gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 171 KESDNVEKLFLDLACRLISEAR 192 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999887543
No 46
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=6.5e-34 Score=191.48 Aligned_cols=163 Identities=34% Similarity=0.538 Sum_probs=139.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
.++||+++|++|+|||||++++.++.+...+.++........+.+++....+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 57999999999999999999999998887777777666667777888889999999999999998888889999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 84 FSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|++++.+++.+. .|...+.... .+.|+++|+||+|+.. .+.+...+...+++.++ ++++++||
T Consensus 82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa 147 (167)
T 1kao_A 82 YSLVNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLES------------EREVSSSEGRALAEEWG-CPFMETSA 147 (167)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECGGGGG------------GCCSCHHHHHHHHHHHT-SCEEEECT
T ss_pred EeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcccc------------cccCCHHHHHHHHHHhC-CCEEEecC
Confidence 9999999988885 5555554433 4899999999999865 24566777888888887 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhh
Q psy14754 162 KSKEGVREVFETATRAALQ 180 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~ 180 (192)
+++.|+++++++|.+.+.+
T Consensus 148 ~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 148 KSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHhh
Confidence 9999999999999987743
No 47
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.4e-33 Score=192.45 Aligned_cols=169 Identities=28% Similarity=0.519 Sum_probs=126.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC-CeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD-SKQVELALWDTAGQEDYDRLRPLSYPDTDVI 80 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 80 (192)
...+||+++|++|+|||||+++|.+..+...+.++.+... ...+.++ .....+.+||+||++.+...+..+++.+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 3579999999999999999999999988776666654333 4444444 4568899999999999999999999999999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754 81 LMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA 155 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (192)
++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+... .+.+..++...+++.....+
T Consensus 86 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----------~~~v~~~~~~~~~~~~~~~~ 153 (182)
T 1ky3_A 86 VLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEES-----------KKIVSEKSAQELAKSLGDIP 153 (182)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-----------GCCSCHHHHHHHHHHTTSCC
T ss_pred EEEEECCChHHHHHHH-HHHHHHHHHhcccCcCCCcEEEEEECCccccc-----------cccCCHHHHHHHHHhcCCCe
Confidence 9999999999998884 6766655432 57999999999998542 24456777888887555579
Q ss_pred EEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 156 YLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
++++||+++.|++++|++|.+.+.+.++
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 154 LFLTSAKNAINVDTAFEEIARSALQQNQ 181 (182)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999876644
No 48
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=6e-33 Score=193.23 Aligned_cols=165 Identities=29% Similarity=0.582 Sum_probs=141.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vil 86 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 86 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEE
Confidence 578999999999999999999999998777666665444 4556778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.++..+. .|+..+.... ++.|+++|+||+|+... +.+..+++..++..++ ++++++||
T Consensus 87 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 152 (206)
T 2bcg_Y 87 VYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK------------RVVEYDVAKEFADANK-MPFLETSA 152 (206)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CCEEECCT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CeEEEEeC
Confidence 99999999998885 6777776654 57999999999999762 4566777888888877 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhc
Q psy14754 162 KSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~ 182 (192)
++|.|++++|++|.+.+.+..
T Consensus 153 ~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 153 LDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 49
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=3.4e-33 Score=188.60 Aligned_cols=163 Identities=23% Similarity=0.493 Sum_probs=139.4
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||+++|.+..+...+.++.+... .....+......+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4679999999999999999999999988776666655443 456677888899999999999999999989999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|+|++++.++..+ ..|+..+... .+..|+++|+||+|+... +.+..++...+++.++ .+++++|
T Consensus 84 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 149 (170)
T 1z0j_A 84 IVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDV------------REVMERDAKDYADSIH-AIFVETS 149 (170)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECB
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 99999999998888 4787777665 468999999999999752 4566777888888887 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHh
Q psy14754 161 AKSKEGVREVFETATRAAL 179 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~ 179 (192)
|+++.|++++|++|.+.+.
T Consensus 150 a~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 150 AKNAININELFIEISRRIP 168 (170)
T ss_dssp TTTTBSHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 50
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=4.9e-33 Score=192.11 Aligned_cols=166 Identities=31% Similarity=0.602 Sum_probs=143.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence 468999999999999999999999988777666665444 5566778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+.+...+...++..++ ++++++||
T Consensus 95 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa 160 (196)
T 3tkl_A 95 VYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTT------------KKVVDYTTAKEFADSLG-IPFLETSA 160 (196)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTT------------TCCSCHHHHHHHHHHTT-CCEEEECT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccc------------ccccCHHHHHHHHHHcC-CcEEEEeC
Confidence 99999999999985 6877776654 4789999999999976 35567788888998888 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhcc
Q psy14754 162 KSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
+++.|++++|++|.+.+.++..
T Consensus 161 ~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 161 KNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988754
No 51
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=195.90 Aligned_cols=165 Identities=28% Similarity=0.565 Sum_probs=133.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||+++|.+..+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998887666555543 33556677888899999999999999988888999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+..++...+++.+...+++++|
T Consensus 104 lV~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~~~~S 170 (192)
T 2il1_A 104 LVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD------------REITRQQGEKFAQQITGMRFCEAS 170 (192)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHTSTTCEEEECB
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHhcCCCeEEEEe
Confidence 999999999999884 7887777654 47999999999999652 456677788888876557999999
Q ss_pred cCCcCCHHHHHHHHHHHHhh
Q psy14754 161 AKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~ 180 (192)
|++|.|++++|++|.+.+.+
T Consensus 171 A~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 171 AKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 52
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.3e-33 Score=189.41 Aligned_cols=163 Identities=30% Similarity=0.393 Sum_probs=125.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce-eeeeeEEEEECCeEEEEEEEeCCCCCcccc-cccccCCCCCEEEE
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQEDYDR-LRPLSYPDTDVILM 82 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~i~ 82 (192)
.+||+++|++|+|||||+++|.+........++. .......+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999999876655443333 334455667888899999999999988876 66667888999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCC--CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCP--NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|||++++++++.+. .|+..+....+ +.|+++|+||+|+.+ .+.+..++...+++.++ ++++++|
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~S 147 (169)
T 3q85_A 82 VFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLAR------------SREVSLEEGRHLAGTLS-CKHIETS 147 (169)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHTT-CEEEECB
T ss_pred EEECCChHHHHHHH-HHHHHHHhcccCCCCCEEEEeeCcchhh------------cccCCHHHHHHHHHHcC-CcEEEec
Confidence 99999999999985 66666665543 899999999999975 35677888889999988 4999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhh
Q psy14754 161 AKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~ 181 (192)
|+++.|++++|+++.+.+..+
T Consensus 148 a~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 148 AALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTTTBSHHHHHHHHHHHHHHT
T ss_pred CccCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 53
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=191.85 Aligned_cols=166 Identities=27% Similarity=0.446 Sum_probs=140.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+|+|++|+|||||+++|.+..+...+.++.+.. ....+.+....+.+.+||+||++.+...+..+++.+|++|+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~ 103 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALL 103 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 46999999999999999999999998877666654433 34566678888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.++..+. .|+..+.... .+.|+++|+||+|+... +.+...+...++...+ ++++++||
T Consensus 104 v~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 169 (193)
T 2oil_A 104 VFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQA------------REVPTEEARMFAENNG-LLFLETSA 169 (193)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHTTSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEECT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECCCcccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999998885 6777766543 58999999999999752 4456777888888877 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhcc
Q psy14754 162 KSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
+++.|++++|++|.+.+.+...
T Consensus 170 ~~~~gi~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 170 LDSTNVELAFETVLKEIFAKVS 191 (193)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999876543
No 54
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=3e-33 Score=190.37 Aligned_cols=163 Identities=33% Similarity=0.558 Sum_probs=138.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEE
Confidence 579999999999999999999999988776666655333 5556678888999999999999999988889999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+.. .+.+..+++.++++.++ ++++++||
T Consensus 94 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa 159 (179)
T 1z0f_A 94 VYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEA------------QRDVTYEEAKQFAEENG-LLFLEASA 159 (179)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred EEeCcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccc------------ccccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999998884 7777776654 5899999999999965 24566778888888887 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhh
Q psy14754 162 KSKEGVREVFETATRAALQ 180 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~ 180 (192)
+++.|++++|+++.+.+.+
T Consensus 160 ~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 160 KTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999988754
No 55
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=3.5e-33 Score=193.97 Aligned_cols=165 Identities=29% Similarity=0.589 Sum_probs=141.1
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4579999999999999999999999988776666555433 455667888899999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+.+..+++..+++.++ ++++++|
T Consensus 86 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~S 151 (203)
T 1zbd_A 86 LMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMED------------ERVVSSERGRQLADHLG-FEFFEAS 151 (203)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTT------------SCCSCHHHHHHHHHHHT-CEEEECB
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCc------------ccccCHHHHHHHHHHCC-CeEEEEE
Confidence 999999999998885 6777776654 5899999999999965 24566778888888888 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhh
Q psy14754 161 AKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~ 181 (192)
|+++.|++++|++|.+.+.+.
T Consensus 152 a~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 56
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-33 Score=191.05 Aligned_cols=164 Identities=29% Similarity=0.485 Sum_probs=136.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
.++||+++|++|+|||||+++|.++.+...+.++...........+.....+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 47899999999999999999999988877666666655555666788889999999999999988888888999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhh---CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 84 FSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|++++.+++.+. .|...+... .++.|+++|+||+|+... +.+...+...++..++ ++++++|
T Consensus 82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 147 (172)
T 2erx_A 82 YSITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESPS------------REVQSSEAEALARTWK-CAFMETS 147 (172)
T ss_dssp EETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECB
T ss_pred EECcCHHHHHHHH-HHHHHHHHHhCCCCCCCEEEEEEccccccc------------cccCHHHHHHHHHHhC-CeEEEec
Confidence 9999999998885 555555443 257999999999999763 4456667778888777 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhh
Q psy14754 161 AKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~ 181 (192)
|+++.|++++|++|.+.+..+
T Consensus 148 a~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 148 AKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp TTTTBSHHHHHHHHHHTCCSS
T ss_pred CCCCcCHHHHHHHHHHHHhhh
Confidence 999999999999999877544
No 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.1e-33 Score=188.82 Aligned_cols=163 Identities=29% Similarity=0.624 Sum_probs=134.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999988776666665444 4455667778899999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.++..+. .|+..+.... ++.|+++|+||+|+.. +....++...+++.++ ++++++||
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa 146 (170)
T 1g16_A 82 VYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-------------RVVTADQGEALAKELG-IPFIESSA 146 (170)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTT-------------CCSCHHHHHHHHHHHT-CCEEECBT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCCc-------------CccCHHHHHHHHHHcC-CeEEEEEC
Confidence 99999999998884 6777776654 5899999999999933 4456777888888887 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy14754 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
+++.|++++|++|.+.+.++
T Consensus 147 ~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 147 KNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 58
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-33 Score=195.01 Aligned_cols=167 Identities=31% Similarity=0.506 Sum_probs=135.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vil 91 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALI 91 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEE
Confidence 468999999999999999999999998877666665444 4556778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|||++++.+++.+. .|+..+.... .+.|++||+||+|+.. .+.+..+++..+++.++ ++++++||
T Consensus 92 V~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~Sa 157 (223)
T 3cpj_B 92 VYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAH------------LRAVPTEESKTFAQENQ-LLFTETSA 157 (223)
T ss_dssp EEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGG------------GCCSCHHHHHHHHHHTT-CEEEECCC
T ss_pred EEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccc------------ccccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999998885 6877776653 4799999999999975 24566777888888877 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhccc
Q psy14754 162 KSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+++.|++++|++|.+.+.+...+
T Consensus 158 ~~~~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 158 LNSENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp C-CCCHHHHHHHHHHHHTTCC--
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999876543
No 59
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-33 Score=193.29 Aligned_cols=165 Identities=30% Similarity=0.460 Sum_probs=141.0
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||+++|.+..+...+.++....+...+.+++..+.+.+||+||++. ...+..+++.+|++++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 357999999999999999999999999887777777776666677888899999999999987 6677778889999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|||++++++++.+. .|+..+... .++.|+++|+||+|+... +.+..+++..+++.++ ++++++|
T Consensus 105 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 170 (196)
T 2atv_A 105 VYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHS------------RQVSTEEGEKLATELA-CAFYECS 170 (196)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SEEEECC
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHhC-CeEEEEC
Confidence 99999999999885 576666553 258999999999999762 4566788888888887 5999999
Q ss_pred cCCcC-CHHHHHHHHHHHHhhhc
Q psy14754 161 AKSKE-GVREVFETATRAALQVK 182 (192)
Q Consensus 161 a~~~~-gi~~~~~~i~~~~~~~~ 182 (192)
|+++. |++++|++|.+.+.+.+
T Consensus 171 a~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 171 ACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp TTTCTTCHHHHHHHHHHHHHHHH
T ss_pred CCcCCcCHHHHHHHHHHHHHhhc
Confidence 99999 99999999999987654
No 60
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=5.8e-33 Score=191.33 Aligned_cols=167 Identities=28% Similarity=0.484 Sum_probs=139.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee--EEEEECCe---------EEEEEEEeCCCCCcccccccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV--ADIEVDSK---------QVELALWDTAGQEDYDRLRPL 72 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~l~D~~g~~~~~~~~~~ 72 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+...+. .+.+.+||+||++.+...+..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 89 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA 89 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHH
Confidence 4699999999999999999999998887766666554432 33444444 789999999999999999999
Q ss_pred cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
+++.+|++|+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.. .+.+..+++.+++..
T Consensus 90 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~ 156 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLED------------QRAVKEEEARELAEK 156 (195)
T ss_dssp TTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGG------------GCCSCHHHHHHHHHH
T ss_pred HHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc------------ccccCHHHHHHHHHH
Confidence 999999999999999999998885 7777776654 5899999999999965 245667778888888
Q ss_pred cCCceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754 151 INAFAYLECSAKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
++ ++++++||+++.|++++|++|.+.+.+..++
T Consensus 157 ~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 157 YG-IPYFETSAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp HT-CCEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred cC-CCEEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 87 5999999999999999999999999876544
No 61
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=7.8e-33 Score=192.70 Aligned_cols=166 Identities=30% Similarity=0.560 Sum_probs=137.5
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||+++|.+..+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 367999999999999999999999998877766665433 3455666777889999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY 156 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (192)
+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.. +....++...++.....+++
T Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~ 151 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-------------RQVATKRAQAWCYSKNNIPY 151 (207)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-------------CCSCHHHHHHHHHHTTSCCE
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCcc-------------cccCHHHHHHHHHhcCCceE
Confidence 999999999998884 6776665433 4789999999999863 33456677777774555799
Q ss_pred EEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 157 LECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+++||++|.|++++|++|.+.+.+.+
T Consensus 152 ~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 152 FETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887654
No 62
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=5.2e-33 Score=189.21 Aligned_cols=164 Identities=33% Similarity=0.537 Sum_probs=137.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
..++||+++|++|+|||||+++|++..+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999998887776666653 33556677888899999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|+|++++.++..+. .|+..+... ..+.|+++|+||+|+... +.+...+...++..++ ++++++|
T Consensus 92 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 157 (179)
T 2y8e_A 92 VVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK------------RQVSTEEGERKAKELN-VMFIETS 157 (179)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEEEB
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCccccc------------CcCCHHHHHHHHHHcC-CeEEEEe
Confidence 999999999998885 666665543 358999999999999752 4566777788888777 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhh
Q psy14754 161 AKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~ 180 (192)
|+++.|++++|++|.+.+.+
T Consensus 158 a~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TTTTBSHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999987654
No 63
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=193.51 Aligned_cols=167 Identities=30% Similarity=0.518 Sum_probs=133.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 103 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 103 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEE
Confidence 579999999999999999999999888776666655433 4556678888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+.. .+.+...++..+++..+ ++++++||
T Consensus 104 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~SA 169 (200)
T 2o52_A 104 VYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDP------------EREVTFLEASRFAQENE-LMFLETSA 169 (200)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHTCTTCEEEEEEECGGGGG------------GCCSCHHHHHHHHHHTT-CEEEEECT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCccc------------ccccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999885 6776665543 5899999999999965 24466777888888877 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhccc
Q psy14754 162 KSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+++.|++++|++|.+.+.+....
T Consensus 170 ~~g~gi~~l~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 170 LTGENVEEAFLKCARTILNKIDS 192 (200)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998876543
No 64
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-32 Score=189.18 Aligned_cols=165 Identities=32% Similarity=0.604 Sum_probs=141.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+... ...+.++...+.+.+|||||++.+...+..+++.+|++|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 468999999999999999999999988776666654433 5566778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.. +.+..++...+++.++ ++++++|
T Consensus 94 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~S 158 (195)
T 1x3s_A 94 VYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN-------------REVDRNEGLKFARKHS-MLFIEAS 158 (195)
T ss_dssp EEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS-------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCcc-------------cccCHHHHHHHHHHcC-CEEEEec
Confidence 99999999998885 7887777654 4799999999999843 3456677888888887 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 161 AKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
|+++.|++++|++|.+.+.....
T Consensus 159 a~~~~gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 159 AKTCDGVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHTSGG
T ss_pred CCCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999887543
No 65
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=100.00 E-value=1.5e-32 Score=204.06 Aligned_cols=178 Identities=57% Similarity=0.994 Sum_probs=156.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
..++|+++|.+|+|||||++++.++.+...+.++........+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 46899999999999999999999998887777777776666777888899999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy14754 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
||++++.++..+...|...+....++.|+++|+||+|+...............+.+...++..+++.++..+++++||++
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 313 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999999876898888887779999999999999876555555555556778889999999998866999999999
Q ss_pred cCCHHHHHHHHHHHHhhh
Q psy14754 164 KEGVREVFETATRAALQV 181 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~~~ 181 (192)
|.|++++|+.|.+.+..+
T Consensus 314 ~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 314 QRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTHHHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHhcC
Confidence 999999999999988654
No 66
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=7.3e-33 Score=186.04 Aligned_cols=162 Identities=33% Similarity=0.574 Sum_probs=138.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
.++||+++|++|+|||||++++.+..+...+.++........+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 46899999999999999999999998877767776666666677888889999999999999988888888999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 84 FSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|++++.++..+ ..|...+.... .+.|+++|+||+|+.. +....++..++++.++ ++++++||
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa 146 (166)
T 2ce2_X 82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAA-------------RTVESRQAQDLARSYG-IPYIETSA 146 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC-------------CCSCHHHHHHHHHHHT-CCEEEECT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhh-------------cccCHHHHHHHHHHcC-CeEEEecC
Confidence 999999998888 46777766554 3799999999999865 2345677788888887 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhh
Q psy14754 162 KSKEGVREVFETATRAALQ 180 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~ 180 (192)
+++.|+++++++|.+.+.+
T Consensus 147 ~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 147 KTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988753
No 67
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.5e-33 Score=191.13 Aligned_cols=165 Identities=26% Similarity=0.492 Sum_probs=139.0
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
..++||+++|++|+|||||+++|.+..+...+.++.+... ...+.++.....+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 3579999999999999999999999987766566555443 445566778899999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|+|++++.+++.+. .|+..+.... ++.|+++|+||+|+.. .+.+..+++.++++.++ ++++++|
T Consensus 101 lV~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~S 166 (192)
T 2fg5_A 101 IVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSD------------IREVPLKDAKEYAESIG-AIVVETS 166 (192)
T ss_dssp EEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGG------------GCCSCHHHHHHHHHTTT-CEEEECB
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccc------------ccccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999998884 7877776654 5799999999999965 24566778888888887 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhh
Q psy14754 161 AKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~ 181 (192)
|+++.|++++|++|.+.+.+.
T Consensus 167 a~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TTTTBSHHHHHHHHHHTCC--
T ss_pred CCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999887654
No 68
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=6.6e-33 Score=190.60 Aligned_cols=163 Identities=28% Similarity=0.548 Sum_probs=135.4
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccc-ccccccCCCCCEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYD-RLRPLSYPDTDVI 80 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~~~~ 80 (192)
...+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+. ..+..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 4679999999999999999999999988777666655433 4566678888999999999999888 7888889999999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754 81 LMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
|+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.. .+.+..++...++..++ +++++
T Consensus 98 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~ 163 (189)
T 1z06_A 98 VFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRS------------AIQVPTDLAQKFADTHS-MPLFE 163 (189)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHTT-CCEEE
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc------------cceeCHHHHHHHHHHcC-CEEEE
Confidence 9999999999999885 6777776653 5899999999999965 24566778888888887 59999
Q ss_pred eccCCc---CCHHHHHHHHHHHHh
Q psy14754 159 CSAKSK---EGVREVFETATRAAL 179 (192)
Q Consensus 159 ~Sa~~~---~gi~~~~~~i~~~~~ 179 (192)
+||+++ .|++++|++|.+.+.
T Consensus 164 ~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 164 TSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CCSSSGGGGSCHHHHHHHHC----
T ss_pred EeCCcCCcccCHHHHHHHHHHHHh
Confidence 999999 999999999987764
No 69
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=192.67 Aligned_cols=166 Identities=30% Similarity=0.392 Sum_probs=133.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccc-cccccCCCCCEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDR-LRPLSYPDTDVI 80 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~ 80 (192)
...+||+++|++|+|||||+++|.+........++.+ +.....+.+++..+.+.+||++|++.+.. .+..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 4679999999999999999999976443322233332 33345567788899999999999987764 666778889999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754 81 LMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.. .+.+..+++..+++.++ +++++
T Consensus 101 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e 166 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLAR------------SREVSLEEGRHLAGTLS-CKHIE 166 (195)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCTT------------TCCSCHHHHHHHHHHTT-CEEEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeechhccc------------cCCcCHHHHHHHHHHhC-CEEEE
Confidence 9999999999999985 6777776544 4799999999999975 24567778888988887 59999
Q ss_pred eccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 159 CSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+||+++.|++++|+++.+.+...+
T Consensus 167 ~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 167 TSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp EBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred EcCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999887544
No 70
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.3e-34 Score=196.02 Aligned_cols=165 Identities=32% Similarity=0.590 Sum_probs=142.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+|+|++|+|||||+++|.+..+...+.++.+... ...+......+.+.+||+||++.+...+..+++.+|++++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 579999999999999999999999888777666655333 4555667778899999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.. .+....++...++..++ ++++++||
T Consensus 102 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa 167 (191)
T 3dz8_A 102 MYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEE------------ERVVPTEKGQLLAEQLG-FDFFEASA 167 (191)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEECBT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc------------ccccCHHHHHHHHHHcC-CeEEEEEC
Confidence 99999999999885 6888887755 5899999999999865 35567788888998888 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhc
Q psy14754 162 KSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+++.|++++|++|.+.+.+..
T Consensus 168 ~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 168 KENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp TTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999987654
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=192.21 Aligned_cols=170 Identities=29% Similarity=0.470 Sum_probs=133.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 3579999999999999999999999988766666555333 456677888899999999999999988888899999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+..... ....+.+..+++..++..++ ++++++|
T Consensus 106 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~~------~~~~~~v~~~~~~~~~~~~~-~~~~~~S 177 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTAA------TEGQKCVPGHFGEKLAMTYG-ALFCETS 177 (199)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHC---CCEEEEEECGGGHHHHH------HTTCCCCCHHHHHHHHHHHT-CEEEECC
T ss_pred EEEECCChHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccccc------cccccccCHHHHHHHHHHcC-CeEEEee
Confidence 999999999999885 6887776654 4799999999999863211 01135567788888888887 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhh
Q psy14754 161 AKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~ 180 (192)
|+++.|++++|++|.+.+.+
T Consensus 178 A~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 178 AKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 72
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.3e-33 Score=196.69 Aligned_cols=169 Identities=24% Similarity=0.381 Sum_probs=108.0
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhC--CCCCcccCcee-eeeeEEEEECCe--EEEEEEEeCCCCCcccccccccCCCC
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKD--QFPEVYVPTVF-ENYVADIEVDSK--QVELALWDTAGQEDYDRLRPLSYPDT 77 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~ 77 (192)
...+||+++|++|+|||||+++|.+. .+...+.++.+ +.....+.+++. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999998 66666555554 334555666665 88999999999999999999999999
Q ss_pred CEEEEEEECCChhhhhchhhhhHHHHhhhCC----CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
|++|+|+|++++.+++.+. .|+..+..... +.|+++|+||+|+... .+.+..+++..+++.++
T Consensus 98 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~-----------~~~v~~~~~~~~~~~~~- 164 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQ-----------RHQVRLDMAQDWATTNT- 164 (208)
T ss_dssp CEEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC------------------CCCHHHHHHHHHHTT-
T ss_pred cEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchh-----------hccCCHHHHHHHHHHcC-
Confidence 9999999999999998885 78888776543 8999999999998652 14466778888998888
Q ss_pred ceEEEeccCC-cCCHHHHHHHHHHHHhhhccc
Q psy14754 154 FAYLECSAKS-KEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 154 ~~~~~~Sa~~-~~gi~~~~~~i~~~~~~~~~~ 184 (192)
++++++||++ +.|++++|++|.+.+.+...+
T Consensus 165 ~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 165 LDFFDVSANPPGKDADAPFLSIATTFYRNYED 196 (208)
T ss_dssp CEEEECCC-------CHHHHHHHHHHHHHHHH
T ss_pred CEEEEeccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 5999999999 999999999999988876544
No 73
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.7e-32 Score=189.48 Aligned_cols=166 Identities=25% Similarity=0.354 Sum_probs=130.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCC--CCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-ccccccccCCCCCEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-YDRLRPLSYPDTDVI 80 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~~~~ 80 (192)
..+||+++|++|+|||||+++|.+... ...+.+++.+.....+.+++..+.+.+|||+|++. +......+++.++++
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ 115 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 115 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEE
Confidence 468999999999999999999996443 33333333344456667788889999999999876 455566778899999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754 81 LMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
|+|||++++++|+.+. .|...+... .++.|+++|+||+|+.. .+.+..+++..++..++ +++++
T Consensus 116 ilVydvt~~~sf~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~------------~r~v~~~e~~~~a~~~~-~~~~e 181 (211)
T 2g3y_A 116 LIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVR------------CREVSVSEGRACAVVFD-CKFIE 181 (211)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTCGG------------GCCSCHHHHHHHHHHHT-CEEEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEChHHhc------------CceEeHHHHHHHHHHcC-CEEEE
Confidence 9999999999999885 576655542 24799999999999965 24566677778888777 59999
Q ss_pred eccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 159 CSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
+||++|.|++++|+++.+.+...+.
T Consensus 182 ~SAk~g~~v~elf~~l~~~i~~~~~ 206 (211)
T 2g3y_A 182 TSAAVQHNVKELFEGIVRQVRLRRD 206 (211)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHCC
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998865543
No 74
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=206.69 Aligned_cols=176 Identities=59% Similarity=1.030 Sum_probs=146.5
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+++|++|+|||||+++|.++.+...+.++........+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 35799999999999999999999998887776666666555555667777889999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|+|++++.+++.+...|...+....++.|+++|+||+|+...............+.+..+++..+++.++..+++++||+
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 99999999999886688888887767899999999999987554444443333445666777788888875589999999
Q ss_pred CcCCHHHHHHHHHHHH
Q psy14754 163 SKEGVREVFETATRAA 178 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~ 178 (192)
+|.|++++|++|.+.+
T Consensus 188 ~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 188 TQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999998765
No 75
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7.4e-32 Score=188.53 Aligned_cols=163 Identities=29% Similarity=0.625 Sum_probs=138.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 98 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL 98 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999988776666655443 4556678888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.. +....++...++..++ ++++++||
T Consensus 99 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa 163 (213)
T 3cph_A 99 VYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-------------RVVTADQGEALAKELG-IPFIESSA 163 (213)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCSS-------------CCSCHHHHHHHHHHHT-CCEEECBT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc-------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999998885 6777776654 3799999999999833 4456677788888877 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy14754 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
+++.|++++|++|.+.+.+.
T Consensus 164 ~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 164 KNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp TTTBSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988765
No 76
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=8.1e-32 Score=187.09 Aligned_cols=162 Identities=27% Similarity=0.474 Sum_probs=133.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeE------------------------------
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQ------------------------------ 52 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------------------------ 52 (192)
..+||+++|++|+|||||+++|++..+...+.++.+..+ ...+.+.+..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 589999999999999999999999988776666654333 3333444333
Q ss_pred -------EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754 53 -------VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 53 -------~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+. .|+..+..... .|+++|+||+| ..
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~-~piilv~NK~D-~~-- 160 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKISSN-YIIILVANKID-KN-- 160 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSC-CEEEEEEECTT-CC--
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHhhCC-CcEEEEEECCC-cc--
Confidence 78999999999999999999999999999999999999998874 77777766543 99999999999 32
Q ss_pred cchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.+....++..++++.++ ++++++||+++.|++++|++|.+.+.+.
T Consensus 161 ----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 161 ----------KFQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp -----------CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ----------cccCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 24566788888888887 5999999999999999999999888654
No 77
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=7.6e-33 Score=194.18 Aligned_cols=166 Identities=30% Similarity=0.508 Sum_probs=137.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCe----------EEEEEEEeCCCCCccccccc
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSK----------QVELALWDTAGQEDYDRLRP 71 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~l~D~~g~~~~~~~~~ 71 (192)
...+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.++.. .+.+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 3579999999999999999999999888766666555433 334445544 78899999999999998888
Q ss_pred ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754 72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ 149 (192)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (192)
.+++.+|++|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+.+..++...+++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~------------~~~v~~~~~~~~~~ 169 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPD------------QREVNERQARELAD 169 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGG------------GCCSCHHHHHHHHH
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEEEEEECCcccc------------ccccCHHHHHHHHH
Confidence 9999999999999999999998884 6777766544 5899999999999965 24566778888888
Q ss_pred HcCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 150 KINAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.++ ++++++||+++.|++++|++|.+.+.+..
T Consensus 170 ~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 170 KYG-IPYFETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp HTT-CCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HCC-CcEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 887 59999999999999999999999987753
No 78
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=2.1e-32 Score=188.98 Aligned_cols=166 Identities=28% Similarity=0.343 Sum_probs=129.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccC-----------ceeeee-eEEE-EECCeEEEEEEEeCCCCCccccc
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-----------TVFENY-VADI-EVDSKQVELALWDTAGQEDYDRL 69 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------~~~~~~-~~~~-~~~~~~~~~~l~D~~g~~~~~~~ 69 (192)
...+||+++|++|+|||||++.+.+. +...+.+ +....+ ...+ ..++..+.+.+|||||++.+...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 35799999999999999999766554 4333222 222111 1122 34567889999999999999999
Q ss_pred ccccCCCCCEEEEEEECC------ChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHH
Q psy14754 70 RPLSYPDTDVILMCFSID------SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEE 143 (192)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 143 (192)
+..+++.+|++|+|||++ +.+++..+. .|+..+....++.|+++|+||+|+.. ....++
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~ 155 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTLDDVPIVIQVNKRDLPD--------------ALPVEM 155 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCTTSSCEEEEEECTTSTT--------------CCCHHH
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhccccCCCCEEEEEEchhccc--------------ccCHHH
Confidence 999999999999999999 445666663 57766655557899999999999865 256777
Q ss_pred HHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754 144 GRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 144 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+.++++.++..+++++||+++.|++++|++|.+.+.++.++
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 156 VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 88888888755999999999999999999999999877554
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=2.7e-32 Score=191.93 Aligned_cols=165 Identities=30% Similarity=0.514 Sum_probs=137.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||+++|+.+.+...+.++.+ +........+...+.+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 3679999999999999999999887776666555553 444556677888999999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|||++++.++..+. .|+..+....++.|+++|+||+|+..... . .+...+++..+ ++++++||
T Consensus 93 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-------------~-~~~~~~~~~~~-~~~~~~Sa 156 (221)
T 3gj0_A 93 IMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV-------------K-AKSIVFHRKKN-LQYYDISA 156 (221)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSCSS-------------C-GGGCCHHHHHT-CEEEECBG
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCccccccc-------------c-HHHHHHHHHcC-CEEEEEeC
Confidence 999999999999985 78888888878999999999999975321 1 13334556666 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhcc
Q psy14754 162 KSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
+++.|++++|++|.+.+.....
T Consensus 157 ~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 157 KSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp GGTBTTTHHHHHHHHHHHTCTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999887653
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=3.8e-32 Score=188.06 Aligned_cols=170 Identities=18% Similarity=0.220 Sum_probs=123.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
....||+|+|++|+|||||+++|.+..+.. .+.++.+... .. ++...+.+.+|||||++.+...+..+++.+|++|
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV-ET--FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE-EE--EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE-EE--EEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 468899999999999999999999998877 5555554222 22 3345678999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhh-----C---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-HHHHHcC
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHF-----C---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-AMAQKIN 152 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~-----~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 152 (192)
+|||+++++++..+...+...+... . ++.|+++|+||+|+.......... ..... .+++..+
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---------~~~~~~~~~~~~~ 162 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELV---------EILDLTTLMGDHP 162 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHH---------HHHTHHHHHTTSC
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHH---------HHhcchhhccCCe
Confidence 9999999999998864444443321 1 279999999999997642211000 00001 1112333
Q ss_pred CceEEEeccCCcCCHHHHHHHHHHHHhhhcccc
Q psy14754 153 AFAYLECSAKSKEGVREVFETATRAALQVKKKK 185 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~ 185 (192)
++++++||+++.|++++|++|.+.+.+..++.
T Consensus 163 -~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~ 194 (199)
T 4bas_A 163 -FVIFASNGLKGTGVHEGFSWLQETASRQSGKA 194 (199)
T ss_dssp -EEEEECBTTTTBTHHHHHHHHHHHHHHHC---
T ss_pred -eEEEEeeCCCccCHHHHHHHHHHHHHHHhccc
Confidence 68999999999999999999999998876543
No 81
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=5.3e-31 Score=181.58 Aligned_cols=166 Identities=25% Similarity=0.369 Sum_probs=127.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCC--CCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-ccccccccCCCCCE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQ--FPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-YDRLRPLSYPDTDV 79 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~~~ 79 (192)
...+||+++|++|+|||||+++|.+.. +...+.+++.+.....+.+++..+.+.+|||+|... +...+..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 457899999999999999999999633 333333333344456667888889999999999776 45566667788999
Q ss_pred EEEEEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy14754 80 ILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL 157 (192)
Q Consensus 80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (192)
+++|||+++.++++... .|...+... .++.|+++|+||+|+.. .+.+...++..++..++ .+++
T Consensus 84 ~i~v~dv~~~~s~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~------------~r~v~~~~~~~~a~~~~-~~~~ 149 (192)
T 2cjw_A 84 YLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVR------------XREVSVSEGRAXAVVFD-XKFI 149 (192)
T ss_dssp EEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECTTCGG------------GCCSCHHHHHHHHHHTT-CEEE
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCeEEEEEechhhhc------------cccccHHHHHHHHHHhC-CceE
Confidence 99999999999999885 566655543 24799999999999865 24456677777777777 5899
Q ss_pred EeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 158 ECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
++||++|.|++++|+++.+.+....
T Consensus 150 e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 150 ETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EeccccCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999886554
No 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.9e-33 Score=193.88 Aligned_cols=164 Identities=31% Similarity=0.613 Sum_probs=130.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 111 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEE
Confidence 469999999999999999999999888777666655443 5566778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+...+...+++.++ ++++++||
T Consensus 112 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~vSA 177 (199)
T 3l0i_B 112 VYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTK------------KVVDYTTAKEFADSLG-IPFLETSA 177 (199)
T ss_dssp CC-CCCSHHHHHHH-HHHHHHHSCC-CCSEEEEC-CCSSCC--------------CCCCSCC-CHHHHTTT-CCBCCCCC
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhccCCCCEEEEEECccCCcc------------ccCCHHHHHHHHHHcC-CeEEEEEC
Confidence 99999999999885 6888776654 47999999999999753 3344455667787777 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy14754 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
+++.|++++|++|.+.+.++
T Consensus 178 ~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 178 KNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp ---HHHHHHHHHHTTTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999998877653
No 83
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=7.2e-32 Score=189.35 Aligned_cols=167 Identities=23% Similarity=0.383 Sum_probs=135.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee-EEEEE-CCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEV-DSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
..+||+++|++|+|||||+++|++..+...+.++.+.... ..... .+..+.+.+|||||++.+...+..+++.+|++|
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence 5799999999999999999999998887666555544332 22222 334488999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+.+.......++...+ ++++++|
T Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~S 155 (218)
T 4djt_A 90 LFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN------------RQKISKKLVMEVLKGKN-YEYFEIS 155 (218)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC----------------CCHHHHHHHTTTCC-CEEEEEB
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc------------ccccCHHHHHHHHHHcC-CcEEEEe
Confidence 999999999999885 7777776554 3599999999999865 24566677777777777 5999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhccc
Q psy14754 161 AKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
|++|.|++++|++|.+.+......
T Consensus 156 a~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 156 AKTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp TTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred cCCCCCHHHHHHHHHHHHhccccc
Confidence 999999999999999999876543
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.6e-31 Score=180.57 Aligned_cols=166 Identities=16% Similarity=0.245 Sum_probs=121.4
Q ss_pred cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
....+||+++|++|+|||||+++|.++.+... .++.+. ....+.+. ...+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~-~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGF-NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSE-EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCc-CCcCcc-ceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 34679999999999999999999998887543 333322 22333444 578999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|+|+++++++......+...+... ..+.|+++|+||+|+........... ......+...+ ++++++|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~S 149 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMAN---------SLGLPALKDRK-WQIFKTS 149 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHH---------HHTGGGCTTSC-EEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHH---------HhCchhccCCc-eEEEECc
Confidence 9999999988888864444444332 25899999999999976421110000 00000111223 5899999
Q ss_pred cCCcCCHHHHHHHHHHHHhhh
Q psy14754 161 AKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~ 181 (192)
|+++.|++++|+++.+.+.++
T Consensus 150 a~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 150 ATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHHHHhhc
Confidence 999999999999999988654
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=7.9e-31 Score=181.52 Aligned_cols=157 Identities=22% Similarity=0.317 Sum_probs=113.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||++++.++.+.. +.++.... ...+.+++ ..+.+|||||++.++..+..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 457899999999999999999999887643 33433332 33444554 789999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----------
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK---------- 150 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 150 (192)
|+|+++++++.... .|+..+... ..+.|+++|+||+|+... ...++..++...
T Consensus 99 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 99 LVDCADHERLLESK-EELDSLMTDETIANVPILILGNKIDRPEA--------------ISEERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTSCEEEEEECTTSTTC--------------CCHHHHHHHHTCTTTCCCSSCC
T ss_pred EEECCCHHHHHHHH-HHHHHHHhCcccCCCcEEEEEECCCcccc--------------CCHHHHHHHhCccccccccccc
Confidence 99999999998885 455544332 358999999999998652 233344444331
Q ss_pred ------cCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754 151 ------INAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 151 ------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
....+++++||++|+|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1236899999999999999999997653
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.4e-31 Score=183.93 Aligned_cols=166 Identities=20% Similarity=0.310 Sum_probs=122.1
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+|+|++|+|||||+++|.+..+...+.++.+.... . +....+.+.+||+||++.+...+..+++.+|++++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-K--ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-E--EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-E--EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 35799999999999999999999999887666665554432 2 23345789999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++++++.+...+...+... ..+.|+++|+||+|+............+.. ..... ..++++++||
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~SA 166 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL---------SAIQD-REICCYSISC 166 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG---------GGCCS-SCEEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhCh---------hhhcc-CCeeEEEEEC
Confidence 999999999988864444444332 258999999999999763211110000000 00011 2258999999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy14754 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
+++.|++++|++|.+.+...
T Consensus 167 ~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 167 KEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp TTCTTHHHHHHHHHHTCC--
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999887654
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=3.6e-30 Score=177.10 Aligned_cols=156 Identities=21% Similarity=0.336 Sum_probs=117.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||++++.++.+... .++.... ...+.+++ ..+.+|||||++.++..+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-CCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-ccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999999887542 3333332 33444554 789999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhh--hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----------
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK---------- 150 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 150 (192)
|+|++++++++... .|+..+.. ...+.|+++|+||+|+.... ..++..+....
T Consensus 97 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 1m2o_B 97 LVDAADPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPNAV--------------SEAELRSALGLLNTTGSQRIE 161 (190)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTCC--------------CHHHHHHHTTCSSCCC---CC
T ss_pred EEECCChHHHHHHH-HHHHHHHcchhhcCCCEEEEEECCCCcCCC--------------CHHHHHHHhCCcccccccccc
Confidence 99999999999885 45544433 23589999999999996522 22222222211
Q ss_pred -cCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754 151 -INAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 151 -~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
...++++++||++|.|++++|++|.+.
T Consensus 162 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 162 GQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 123689999999999999999998764
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.9e-30 Score=176.37 Aligned_cols=161 Identities=17% Similarity=0.262 Sum_probs=120.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCC-CCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQ-FPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||+++|.+.. +...+.++.+ .....+.++ +..+.+|||||++.+...+..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 468999999999999999999999887 4444444443 223333333 478999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH--Hc--CCc
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ--KI--NAF 154 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~ 154 (192)
+|+|++++.++..+...+........ .+.|+++|+||+|+... ...++..+... .+ ..+
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--------------VTSVKVSQLLCLENIKDKPW 161 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCCSSCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--------------CCHHHHHHHhChhhccCCce
Confidence 99999999999888644444443322 48999999999999653 12333333332 11 136
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 155 AYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
+++++||+++.|++++|++|.+.+.+
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999988754
No 89
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=4.3e-31 Score=177.39 Aligned_cols=155 Identities=19% Similarity=0.293 Sum_probs=115.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|++|+|||||++++.++.+... .|+.+ ..... +......+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-CCCSS-CCEEE--EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-cCcCc-eeEEE--EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 5899999999999999999998877643 44333 12222 33345789999999999999888889999999999999
Q ss_pred CCChhhhhchhhhhHHHHhh--hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH-HH----HHcCCceEEE
Q psy14754 86 IDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA-MA----QKINAFAYLE 158 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~ 158 (192)
+++++++.... .|+..+.. ..++.|+++|+||+|+.+... ..+... +. ... .+++++
T Consensus 77 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~ 140 (164)
T 1r8s_A 77 SNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNAMN--------------AAEITDKLGLHSLRHR-NWYIQA 140 (164)
T ss_dssp TTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCSSC-CEEEEE
T ss_pred CCCHHHHHHHH-HHHHHHHhchhhcCCeEEEEEECcCCcCCCC--------------HHHHHHHhCcccccCc-cEEEEE
Confidence 99999998885 45544433 235899999999999966321 111111 11 111 257999
Q ss_pred eccCCcCCHHHHHHHHHHHHhh
Q psy14754 159 CSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
+||+++.|++++|++|.+.+..
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC--
T ss_pred cccCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999988754
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.1e-30 Score=175.86 Aligned_cols=163 Identities=18% Similarity=0.265 Sum_probs=118.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||+++|.++.+. .+.++.+. ....+.++ +..+.+|||||++.+...+..+++.+|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~-~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS-NVEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS-SCEEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc-ceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999988776 44444432 23334444 4789999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----cCCceE
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----INAFAY 156 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 156 (192)
|+|++++++++... .|+..+... ..+.|+++|+||+|+.... ..++..+.... ...+++
T Consensus 90 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~ 154 (187)
T 1zj6_A 90 VVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKECM--------------TVAEISQFLKLTSIKDHQWHI 154 (187)
T ss_dssp EEETTCTTTHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTCC--------------CHHHHHHHHTGGGCCSSCEEE
T ss_pred EEeCCCHHHHHHHH-HHHHHHHhchhhCCCeEEEEEECCCCcCCC--------------CHHHHHHHhChhhhcCCCcEE
Confidence 99999999999886 455555443 3589999999999996531 12222222211 112589
Q ss_pred EEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754 157 LECSAKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+++||++|.|+++++++|.+.+......
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 155 QACCALTGEGLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHCC----
T ss_pred EEccCCCCcCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999988766543
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=3.5e-30 Score=176.44 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=120.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||++++.++. ...+.++.+.. ...+.++ ...+.+|||||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 467999999999999999999999887 44445544422 3333443 5789999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH----HcCCceEE
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ----KINAFAYL 157 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 157 (192)
|+|++++++++.+...+...+... .++.|+++|+||+|+..... .++..+... ....++++
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 157 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--------------CNAIQEALELDSIRSHHWRIQ 157 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--------------HHHHHHHhChhhccCCceEEE
Confidence 999999999988854343443331 35899999999999976321 111111111 01235899
Q ss_pred EeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 158 ECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
++||+++.|++++|+++.+.+.+.
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999887653
No 92
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=1.2e-30 Score=178.15 Aligned_cols=160 Identities=19% Similarity=0.306 Sum_probs=116.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+++|++|+|||||++++.+..+.. +.++.+. ....+.++ +..+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g~-~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGF-NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTE-EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCCe-EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 568999999999999999999999875432 2333321 22333444 5789999999999999888889999999999
Q ss_pred EEECCChhhhhchhhhhHHHH-hh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH----HcCCceE
Q psy14754 83 CFSIDSPDSLENIPEKWTPEV-KH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ----KINAFAY 156 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~-~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 156 (192)
|+|+++++++.... .|+..+ .. ...+.|+++|+||+|+..... .++..+... ....+++
T Consensus 90 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 154 (181)
T 1fzq_A 90 VIDSADRKRFEETG-QELTELLEEEKLSCVPVLIFANKQDLLTAAP--------------ASEIAEGLNLHTIRDRVWQI 154 (181)
T ss_dssp EEETTCGGGHHHHH-HHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEE
T ss_pred EEECcCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcCcccCCC--------------HHHHHHHhCchhccCCceEE
Confidence 99999999988875 444443 32 235799999999999976422 111111110 0112589
Q ss_pred EEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 157 LECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+++||++|+|++++|+++.+.+.+.
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 155 QSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp EECCTTTCTTHHHHHHHHHHTC---
T ss_pred EEccCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999887654
No 93
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=5.4e-29 Score=172.41 Aligned_cols=167 Identities=33% Similarity=0.557 Sum_probs=137.3
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCE
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDV 79 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 79 (192)
|....++|+++|++|||||||++++.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+++
T Consensus 1 m~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 80 (199)
T 2f9l_A 1 MYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG 80 (199)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE
Confidence 667789999999999999999999999988776666554333 4566778888999999999999998888888899999
Q ss_pred EEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy14754 80 ILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
+++|+|+++..++..+. .|...+.... .+.|+++++||+|+... +.....+++.++...+ +.+++
T Consensus 81 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~-~~~~d 146 (199)
T 2f9l_A 81 ALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNN-LSFIE 146 (199)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEE
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc------------cCcCHHHHHHHHHHcC-CeEEE
Confidence 99999999998888774 5766665443 47899999999999652 3445667788888777 58999
Q ss_pred eccCCcCCHHHHHHHHHHHHhhh
Q psy14754 159 CSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+||+++.|++++|++|.+.+.+.
T Consensus 147 ~Sal~~~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 147 TSALDSTNVEEAFKNILTEIYRI 169 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=8.9e-31 Score=180.45 Aligned_cols=159 Identities=16% Similarity=0.263 Sum_probs=113.6
Q ss_pred cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...++||+++|++|+|||||++++.++.+.. +.++.+ .....+.. ....+.+||+||++.+...+..+++.+|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999999887653 233322 11222333 4578999999999999999888999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhh--hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH-HH----HHcCCc
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA-MA----QKINAF 154 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~ 154 (192)
+|+|+++++++.... .|+..+.. ..++.|+++|+||+|+..... ..+..+ +. ... .+
T Consensus 102 lv~D~~~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~i~~~~~~~~~~~~-~~ 165 (192)
T 2b6h_A 102 FVVDSNDRERVQESA-DELQKMLQEDELRDAVLLVFANKQDMPNAMP--------------VSELTDKLGLQHLRSR-TW 165 (192)
T ss_dssp EEEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCSSC-CE
T ss_pred EEEECCCHHHHHHHH-HHHHHHhcccccCCCeEEEEEECCCCCCCCC--------------HHHHHHHhCcccccCC-ce
Confidence 999999999998885 45544432 225799999999999965321 111111 11 111 25
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 155 AYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
+++++||++|.|++++|++|.+.+.+
T Consensus 166 ~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 166 YVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred EEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 79999999999999999999988753
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.8e-30 Score=176.40 Aligned_cols=160 Identities=18% Similarity=0.232 Sum_probs=116.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||++++.++.+ ..+.++.+. ....+.++ +..+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~-~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF-NVETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC-CEEEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc-ceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999998776 233333332 22333443 3789999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----cCCceE
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----INAFAY 156 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 156 (192)
|+|++++++++... .|+..+... ..+.|+++|+||+|+..... ..+..+.... ...+++
T Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 92 VVDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQPGALS--------------ASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp EEETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--------------HHHHHHHTTTTTCCSSCEEE
T ss_pred EEECCCHHHHHHHH-HHHHHHHcChhhCCCeEEEEEECCCCCCCCC--------------HHHHHHHhCcccccCCceEE
Confidence 99999998888885 455544433 35899999999999966321 1222221111 112589
Q ss_pred EEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 157 LECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+++||+++.|+++++++|.+.+.+.
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=3.5e-30 Score=175.84 Aligned_cols=157 Identities=21% Similarity=0.330 Sum_probs=116.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+++|++|+|||||+++|.+..+ ..+.++.+.. ...+.++ +..+.+||+||++.+...+..+++.+|++++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEET--TEEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999887 3333333322 2333444 3789999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----cCCceEE
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----INAFAYL 157 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 157 (192)
|+|++++++++.+...+....... ..+.|+++|+||+|+..... ..+..+.... ...++++
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~i~~~~~~~~~~~~~~~~~ 160 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--------------VAEISQFLKLTSIKDHQWHIQ 160 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCC--------------HHHHHHHhCcccccCCceEEE
Confidence 999999989988864444444321 35899999999999965321 1222221110 1125899
Q ss_pred EeccCCcCCHHHHHHHHHHH
Q psy14754 158 ECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i~~~ 177 (192)
++||+++.|++++|++|.+.
T Consensus 161 ~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 161 ACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ECBTTTTBTHHHHHHHHHTC
T ss_pred EccCCCCcCHHHHHHHHHhh
Confidence 99999999999999998764
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=5.6e-30 Score=175.92 Aligned_cols=166 Identities=15% Similarity=0.246 Sum_probs=120.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||++++.++.+.. +.++.+ .....+..+ ...+.+|||||++.+...+..+++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 468999999999999999999998877643 233332 222333343 5789999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|+++++++......+...+... .++.|+++|+||+|+.......+....+. .......+ ++++++||
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~Sa 165 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLG---------VSSIMNRT-WTIVKSSS 165 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTT---------GGGCCSSC-EEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhC---------hhhccCCc-eEEEEccC
Confidence 999999988888764444444332 35899999999999976422111000000 00111122 58999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhc
Q psy14754 162 KSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+++.|++++++++.+.+.+.+
T Consensus 166 ~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 166 KTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp TTCTTHHHHHHHHHHHHHHTC
T ss_pred CCccCHHHHHHHHHHHHHhcc
Confidence 999999999999999886653
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1e-30 Score=180.64 Aligned_cols=167 Identities=16% Similarity=0.268 Sum_probs=119.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEEC-CeEEEEEEEeCCCCCcccccc---cccCCCC
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVD-SKQVELALWDTAGQEDYDRLR---PLSYPDT 77 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~---~~~~~~~ 77 (192)
...+||+++|++|+|||||++++.+..... ...... ........+. +..+.+.+||+||++.|.... ..+++.+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 96 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence 468999999999999999999887753332 211111 1112222232 566789999999999987766 7888999
Q ss_pred CEEEEEEECCCh--hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH----Hc
Q psy14754 78 DVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ----KI 151 (192)
Q Consensus 78 ~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 151 (192)
|++|+|||++++ +++..+. .|+..+....++.|+++|+||+|+..+...... .+.+......++++ .+
T Consensus 97 ~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 97 GALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIET-----QRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp SEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH-----HHHHHHHHHHHHHHTTCTTS
T ss_pred CEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhHH-----HhHHHHHHHHHHHHhhhhcC
Confidence 999999999997 5555553 566655555679999999999998753221111 12344455666776 44
Q ss_pred CCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754 152 NAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
+ ++++++||++ .|++++|+.+.+.+
T Consensus 171 ~-~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 H-LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp C-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred C-cceEEEEech-hhHHHHHHHHHHHh
Confidence 5 6999999999 99999999998875
No 99
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=1.1e-28 Score=167.63 Aligned_cols=163 Identities=21% Similarity=0.267 Sum_probs=117.0
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCE
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDV 79 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 79 (192)
|....++|+++|++|+|||||+++|.+..+...+.++.+... ...+..++ ..+.+|||||++.+...+...++.+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 345789999999999999999999999888766555443322 33344454 457899999999999999999999999
Q ss_pred EEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH-------HcC
Q psy14754 80 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ-------KIN 152 (192)
Q Consensus 80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 152 (192)
+++|+|++++...... .++..+.. .+.|+++|+||+|+..... .+...... .++
T Consensus 82 ~i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~~---------------~~~~~~~~~~~~~~~~~~ 142 (178)
T 2lkc_A 82 VILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEANP---------------DRVMQELMEYNLVPEEWG 142 (178)
T ss_dssp EEEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSCH---------------HHHHHHHTTTTCCBTTTT
T ss_pred EEEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCCH---------------HHHHHHHHhcCcChhHcC
Confidence 9999999884221111 12222222 3799999999999976321 11111111 111
Q ss_pred -CceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754 153 -AFAYLECSAKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 153 -~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
..+++++||+++.|++++|++|.+.+...+..
T Consensus 143 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 143 GDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp SSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred CcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence 25899999999999999999999887765543
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=8.1e-30 Score=178.40 Aligned_cols=173 Identities=14% Similarity=0.201 Sum_probs=116.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCe-EEEEEEEeCCCCCcccc-cccccCCCCCEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSK-QVELALWDTAGQEDYDR-LRPLSYPDTDVI 80 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~~~~ 80 (192)
..++||+++|++|+|||||+++|.+..+...+.++..... .+.+++. .+.+.+|||||++.+.. .+..+++.+|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 4689999999999999999999999988776554332222 2444443 68899999999999887 677788999999
Q ss_pred EEEEECCChh-hhhchhhhhHHHHhhh---CCCCcEEEEeecccccCCccchhhhhhc----------cCCC--------
Q psy14754 81 LMCFSIDSPD-SLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPNTIKELNKM----------KQEP-------- 138 (192)
Q Consensus 81 i~v~d~~~~~-~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~----------~~~~-------- 138 (192)
++|+|+++.. ++....+.|...+... ..+.|+++|+||+|+............+ ....
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 9999999854 4555555666655441 3478999999999998754322111100 0001
Q ss_pred ----CCHHHHHHHHHHcC--CceEEEeccCCc------CCHHHHHHHHHHH
Q psy14754 139 ----VKPEEGRAMAQKIN--AFAYLECSAKSK------EGVREVFETATRA 177 (192)
Q Consensus 139 ----~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~gi~~~~~~i~~~ 177 (192)
....++..|+.... .++|+++||++| .|++++|++|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11111112221111 468999999999 9999999999875
No 101
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=187.14 Aligned_cols=164 Identities=19% Similarity=0.292 Sum_probs=116.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
.++||+|+|++|+|||||+++|.+..+.... ++.... .. .++...+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~-~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN-VE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE-EE--EEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE-EE--EEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 5689999999999999999999988764432 222211 12 2333457899999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy14754 84 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
||++++.++..+...|...+... .++.|++||+||+|+............+... .... ..++++++||+
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~---------~~~~-~~~~~~~vSAk 309 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH---------SLRH-RNWYIQATCAT 309 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCT---------TCCS-SCEEEEECBTT
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchh---------hhhc-CCCEEEEEECC
Confidence 99999999998876666665543 2589999999999997643211111111000 0011 22589999999
Q ss_pred CcCCHHHHHHHHHHHHhhh
Q psy14754 163 SKEGVREVFETATRAALQV 181 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~ 181 (192)
+|.|++++|++|.+.+.+.
T Consensus 310 ~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 310 SGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp TTBTHHHHHHHHHHHHTC-
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 9999999999999987654
No 102
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=3.3e-30 Score=176.46 Aligned_cols=168 Identities=22% Similarity=0.343 Sum_probs=115.8
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC--CCCCcccCceeeee-eEEEEE---CCeEEEEEEEeCCCCCcccccccccCCCCC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD--QFPEVYVPTVFENY-VADIEV---DSKQVELALWDTAGQEDYDRLRPLSYPDTD 78 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~ 78 (192)
++||+++|++|+|||||+++|.+. .+...+.++.+..+ ...+.. +...+.+.+||++|++.+...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 34343444443322 222221 235678999999999999888888888999
Q ss_pred EEEEEEECCCh-hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc---
Q psy14754 79 VILMCFSIDSP-DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF--- 154 (192)
Q Consensus 79 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (192)
++++|||++++ .++..+ ..|+..+....++.|+++|+||+|+........ ........+++.++..
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 151 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQRKA---------CMSKITKELLNKRGFPAIR 151 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHH---------HHHHHHHHTTTCTTSCEEE
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchhhHH---------HHHHHHHHHHHhcCCcchh
Confidence 99999999997 478877 478887776667899999999999865211000 0012234455445531
Q ss_pred eEEEeccCCcC-CHHHHHHHHHHHHhhhc
Q psy14754 155 AYLECSAKSKE-GVREVFETATRAALQVK 182 (192)
Q Consensus 155 ~~~~~Sa~~~~-gi~~~~~~i~~~~~~~~ 182 (192)
+++++||+++. |++++++.|.+.+...+
T Consensus 152 ~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 152 DYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp EEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred heEEEecccCchhHHHHHHHHHHHHhccc
Confidence 38999999996 99999999998877644
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=8.4e-29 Score=174.90 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=114.5
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccc---------ccccc
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYD---------RLRPL 72 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~ 72 (192)
...++|+++|++|+|||||+++|++..+.....+..+... ...... ....+.+|||||+.... ..+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4679999999999999999999999876532222222111 112222 23679999999984321 11123
Q ss_pred cCCCCCEEEEEEECCChhhhhch-hhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHH---HHHHHH
Q psy14754 73 SYPDTDVILMCFSIDSPDSLENI-PEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPE---EGRAMA 148 (192)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 148 (192)
.+..+|++|+|+|++++.++... ...|+..+....++.|+++|+||+|+... +.+... ....++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~ 172 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM------------DSLSIDNKLLIKQIL 172 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--------------CCCHHHHHHHHHHH
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc------------hhhHHHHHHHHHHHH
Confidence 46778999999999998776522 12466666665568999999999999763 223332 344555
Q ss_pred HHcC-CceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 149 QKIN-AFAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 149 ~~~~-~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
...+ ..+++++||++|.|++++|++|.+.+...+.
T Consensus 173 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 173 DNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp HHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 5543 2589999999999999999999999877653
No 104
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=2.4e-27 Score=163.16 Aligned_cols=161 Identities=32% Similarity=0.535 Sum_probs=134.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++|+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+...++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 458999999999999999999999988777666665443 4566778888899999999999998888888889999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|.++..+++.+. .|...+.... .+.|+++++||+|+... +......++.++...+ +.++++||
T Consensus 108 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~-~~~ld~Sa 173 (191)
T 1oix_A 108 VYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNG-LSFIETSA 173 (191)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999998888774 5766655433 47899999999999652 3445677888888877 58999999
Q ss_pred CCcCCHHHHHHHHHHHH
Q psy14754 162 KSKEGVREVFETATRAA 178 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~ 178 (192)
+++.|++++|+.|.+.+
T Consensus 174 ld~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 174 LDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=1.8e-28 Score=165.04 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=109.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCccccc------ccccCC-
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDRL------RPLSYP- 75 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~~- 75 (192)
.+++|+++|++|+|||||+++|.+..+.....++.+. .....+.+++ ..+.+|||||+..+... ...+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 4689999999999999999999987765444443322 2233333443 57999999999877532 233443
Q ss_pred -CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754 76 -DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF 154 (192)
Q Consensus 76 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (192)
.+|++++|+|+++.+.. ..|...+... +.|+++|+||+|+... +.+.. +...+++.++ .
T Consensus 80 ~~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~------------~~~~~-~~~~~~~~~~-~ 139 (165)
T 2wji_A 80 EKPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKS------------LGIEI-DVDKLEKILG-V 139 (165)
T ss_dssp HCCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHH------------TTCCC-CHHHHHHHHT-S
T ss_pred CCCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccc------------cChhh-HHHHHHHHhC-C
Confidence 78999999999986433 2455555543 7999999999998642 11221 3566777777 5
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHH
Q psy14754 155 AYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
+++++||++|.|++++|+++.+.+
T Consensus 140 ~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 KVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999998865
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=2.9e-28 Score=189.93 Aligned_cols=168 Identities=20% Similarity=0.251 Sum_probs=121.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|.+|+|||||+++|.+..+... .++.+.... .+...++.+.+|||||++.+...+..+++.+|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-~~T~~~~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEE---EEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-CCccceeEE---EEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999999886543 333332221 234456789999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|||+++++++..+...+...+... ..++|++||+||+|+............+... +... ..++++++||
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~SA 465 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT---------RIRD-RNWYVQPSCA 465 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCT---------TCCS-SCEEEEECBT
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchh---------hhhc-CCeEEEEEEC
Confidence 999999999999865555554432 2589999999999997632211111110000 0001 1257999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhccc
Q psy14754 162 KSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
++|+|++++|++|.+.+.....+
T Consensus 466 ~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 466 TSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp TTTBTHHHHHHHHHHHCC-----
T ss_pred CCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999988766543
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=1.6e-28 Score=180.43 Aligned_cols=168 Identities=14% Similarity=0.265 Sum_probs=124.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCc---ccCceeeeeeEEEEECCeEEEEEEEeCCCCCcc-----cccccccCC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTAGQEDY-----DRLRPLSYP 75 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~~ 75 (192)
..+||+++|++|+|||||+++++++..... +.++.... .....+.+ .+.+.+||+||++.+ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~-~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVE-HSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEE-EEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceE-EEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 468999999999999999999998743322 22222222 22333333 678999999999988 677888889
Q ss_pred CCCEEEEEEECCChhhhhchhhhh---HHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754 76 DTDVILMCFSIDSPDSLENIPEKW---TPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 76 ~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
.+|++|+|||++++++++.+. .| +..+....++.|+++|+||+|+..+....... ....+++.++++.++
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~-~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~------~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELF------QIMMKNLSETSSEFG 152 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHH-HHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHH------HHHHHHHHHHHHTTT
T ss_pred cCCEEEEEEECCChhhHHHHH-HHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHH------HHHHHHHHHHHHHcC
Confidence 999999999999999888874 44 44445556789999999999987632211000 133466778888887
Q ss_pred C--ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 153 A--FAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 153 ~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
. .+++++||++ .|+.++|..+.+.+...
T Consensus 153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp CCSCEEEECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred CCCeEEEEeeecC-ChHHHHHHHHHHHHcCC
Confidence 3 7999999999 89999999988876543
No 108
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.9e-28 Score=175.70 Aligned_cols=162 Identities=18% Similarity=0.230 Sum_probs=117.0
Q ss_pred ccceeEEEEcCC---------CCchhHHHHHHhh---CCCCCcccCce-eeee-eEEE--------------EECCeEEE
Q psy14754 3 AIRKKLVIVGDG---------ACGKTCLLIVFSK---DQFPEVYVPTV-FENY-VADI--------------EVDSKQVE 54 (192)
Q Consensus 3 ~~~~~i~v~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~-~~~~--------------~~~~~~~~ 54 (192)
...+||+++|.+ |+|||||+++|.+ ..+...+.+++ +..+ ...+ ..++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 457999999999 9999999999998 45555555543 1111 1111 13456788
Q ss_pred EEEEe-----------------------CCCCCcccccccccCC---------------------CCCEEEEEEECCCh-
Q psy14754 55 LALWD-----------------------TAGQEDYDRLRPLSYP---------------------DTDVILMCFSIDSP- 89 (192)
Q Consensus 55 ~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~- 89 (192)
+.+|| ++|++.|...+..+++ ++|++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 6677778888888877 79999999999998
Q ss_pred -hhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCC
Q psy14754 90 -DSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEG 166 (192)
Q Consensus 90 -~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 166 (192)
.+++.+. .|+..+... .++.|+++|+||+|+... +.+ ++...++.....++++++||+++.|
T Consensus 177 ~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~------------~~v--~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 177 NRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTKCDEGVE------------RYI--RDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp --CHHHHH-HHHHHHHHHHHHTTCCEEEEEECGGGBCH------------HHH--HHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred hhhHHHHH-HHHHHHHHHhccCCCCEEEEEEccccccc------------HHH--HHHHHHHHhcCCCeEEEEECCCCCC
Confidence 8998885 677766543 257999999999998542 111 3556666654346999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14754 167 VREVFETATRAAL 179 (192)
Q Consensus 167 i~~~~~~i~~~~~ 179 (192)
++++|++|.+.+.
T Consensus 242 v~elf~~l~~~l~ 254 (255)
T 3c5h_A 242 VDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988763
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=3.6e-28 Score=162.57 Aligned_cols=150 Identities=21% Similarity=0.189 Sum_probs=102.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCc-ccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcc-------cccccccCCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVF-ENYVADIEVDSKQVELALWDTAGQEDY-------DRLRPLSYPD 76 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~ 76 (192)
.||+++|++|+|||||++++.+..+... ..++.+ ......+...+ ..+.+|||||+..+ ...+...++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 5899999999999999999999875422 122222 22233344444 37899999998763 3334556789
Q ss_pred CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY 156 (192)
Q Consensus 77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (192)
+|++++|+|++++.+ .....+...+... +.|+++|+||+|+.... ++..+++ .++..++
T Consensus 80 ~~~~i~v~d~~~~~~--~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~----------------~~~~~~~-~~~~~~~ 138 (161)
T 2dyk_A 80 AEVVLFAVDGRAELT--QADYEVAEYLRRK--GKPVILVATKVDDPKHE----------------LYLGPLY-GLGFGDP 138 (161)
T ss_dssp CSEEEEEEESSSCCC--HHHHHHHHHHHHH--TCCEEEEEECCCSGGGG----------------GGCGGGG-GGSSCSC
T ss_pred CCEEEEEEECCCccc--HhHHHHHHHHHhc--CCCEEEEEECcccccch----------------HhHHHHH-hCCCCCe
Confidence 999999999998532 2222344444443 79999999999997631 1112233 3443379
Q ss_pred EEeccCCcCCHHHHHHHHHHHH
Q psy14754 157 LECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
+++||+++.|++++|+++.+.+
T Consensus 139 ~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 139 IPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp EECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEecccCCChHHHHHHHHHhC
Confidence 9999999999999999998764
No 110
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=2.6e-27 Score=173.94 Aligned_cols=164 Identities=18% Similarity=0.105 Sum_probs=121.0
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCe-EEEEEEEeCCCCCccc----------cccc
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSK-QVELALWDTAGQEDYD----------RLRP 71 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~----------~~~~ 71 (192)
+..-.|+++|.+|+|||||+|+|++..+......+.++........... +..+.+|||||+..+. ..+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 3567899999999999999999999887654333333332222222223 5789999999986654 3445
Q ss_pred ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy14754 72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI 151 (192)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (192)
..++.+|++++|+|++++.+.... ..|...+... +.|+++|+||+|+... ..........+.+.+
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~------------~~~~~~~~~~l~~~~ 152 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGP------------AKNVLPLIDEIHKKH 152 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSS------------GGGGHHHHHHHHHHC
T ss_pred HHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCC------------HHHHHHHHHHHHHhc
Confidence 567789999999999987666665 3557776664 7999999999999732 223345556677776
Q ss_pred -CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 152 -NAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 152 -~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
...+++++||++|.|++++++++.+.+.+.
T Consensus 153 ~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 153 PELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp TTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 346899999999999999999999988654
No 111
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=1.8e-28 Score=178.87 Aligned_cols=163 Identities=13% Similarity=0.187 Sum_probs=116.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCc---ccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc---cccccCCCCCEE
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTAGQEDYDR---LRPLSYPDTDVI 80 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~~~~ 80 (192)
||+++|+.|+|||||++++.++.++.. ..++.+.... . ++ ..+.+++|||+|+++|.. .+..++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~-~--v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE-H--FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE-E--EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE-E--Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 799999999999999998876654332 2333333322 1 22 347899999999999974 357889999999
Q ss_pred EEEEECCChhhhhchhhhh---HHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----cCC
Q psy14754 81 LMCFSIDSPDSLENIPEKW---TPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----INA 153 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 153 (192)
|+|||+++. +....+.| +..+....++.|+++++||+|+..+..+... .+.+..+++.++++. ++
T Consensus 77 IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~-----~R~V~~~~~~~la~~~~~~~~- 148 (331)
T 3r7w_B 77 VYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDA-----QRDIMQRTGEELLELGLDGVQ- 148 (331)
T ss_dssp EEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHH-----HHHHHHHHHHTTSSSSCSCCC-
T ss_pred EEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhH-----HHHhhHHHHHHHHhhcccccC-
Confidence 999999997 33333334 4444455678999999999999764321110 123445556666664 34
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 154 FAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
++|++|||++ .+|.++|..+.+.+....
T Consensus 149 i~f~eTSAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 149 VSFYLTSIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp EEEECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred ceEEEeccCC-CcHHHHHHHHHHHHHhhH
Confidence 6999999998 589999999998887653
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=2.4e-27 Score=170.00 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=114.1
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc------cccC--
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR------PLSY-- 74 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~~-- 74 (192)
...++|+++|++|+|||||+++|.+..+.....++.+. ......+...+..+.+|||||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv-~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTV-EKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCC-EEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceE-EEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 45789999999999999999999987765333332222 22222233334789999999998876543 3333
Q ss_pred CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754 75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF 154 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (192)
..+|++++|+|+++.++.. .|...+... +.|+++|+||+|+... +.+. .....+++.++ +
T Consensus 82 ~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~------------~~i~-~~~~~l~~~lg-~ 141 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKK------------TGMK-IDRYELQKHLG-I 141 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHH------------TTCC-BCHHHHHHHHC-S
T ss_pred cCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCc------------cchH-HHHHHHHHHcC-C
Confidence 5899999999999865432 344455443 7999999999998652 1222 23567777787 5
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754 155 AYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
|++++||++|.|++++|+++.+.+.
T Consensus 142 ~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 142 PVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 9999999999999999999998765
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=4e-28 Score=166.56 Aligned_cols=159 Identities=17% Similarity=0.207 Sum_probs=109.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC-----------CCcccccccccC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG-----------QEDYDRLRPLSY 74 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~~ 74 (192)
+||+++|++|+|||||+++|.+..+...+.++.+. ........ .+.+||||| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR-KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT-SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc-eeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999998877665554432 22223333 689999999 444555555555
Q ss_pred CC-CCEEEEEEECCChhhhhchhhhhHHH---------Hhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHH
Q psy14754 75 PD-TDVILMCFSIDSPDSLENIPEKWTPE---------VKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEE 143 (192)
Q Consensus 75 ~~-~~~~i~v~d~~~~~~~~~~~~~~~~~---------~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 143 (192)
+. ++++++++++.+..++..+.+.|... ... ...+.|+++|+||+|+.... .+.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------------~~~ 141 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---------------QEV 141 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---------------HHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---------------HHH
Confidence 54 56555555555555665554444431 111 11479999999999987631 345
Q ss_pred HHHHHHHcCC------ceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754 144 GRAMAQKINA------FAYLECSAKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 144 ~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
...+++.++. .+++++||++|.|++++|+++.+.+.+.+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 142 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 6667776663 2479999999999999999999988776544
No 114
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=2.4e-27 Score=163.27 Aligned_cols=161 Identities=17% Similarity=0.229 Sum_probs=107.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC----------CCcccccccc
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG----------QEDYDRLRPL 72 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~~~ 72 (192)
...+||+++|++|+|||||+++|++............+......... ..+.+||||| ++.+...+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 35689999999999999999999998744332222222222222222 2578999999 4445444444
Q ss_pred cCCC---CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754 73 SYPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ 149 (192)
Q Consensus 73 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (192)
+++. +|++++|+|+++..+.... .+...+... +.|+++|+||+|+..... .....++...++.
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~ 163 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE----------RAKKLEEHRKVFS 163 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG----------HHHHHHHHHHHHH
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH----------HHHHHHHHHHHHh
Confidence 4444 4999999999875332222 333334433 799999999999975322 1122344555666
Q ss_pred HcCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 150 KINAFAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
..+.++++++||+++.|++++|++|.+.+.+
T Consensus 164 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 164 KYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred hcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 5565799999999999999999999988754
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=1.6e-27 Score=164.32 Aligned_cols=158 Identities=13% Similarity=0.152 Sum_probs=101.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCC----------CCcccccccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAG----------QEDYDRLRPL 72 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~~~ 72 (192)
..++|+++|++|+|||||+++|++..+.....++.+... ......+. .+.+||||| ++.+...+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 578999999999999999999999875444333332222 22223332 589999999 4555555555
Q ss_pred cCCCC---CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH-HH
Q psy14754 73 SYPDT---DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA-MA 148 (192)
Q Consensus 73 ~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 148 (192)
+++.+ |++++|+|++++.+.... .+...+.. .+.|+++|+||+|+........ ..++..+ +.
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~----------~~~~~~~~~~ 164 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGKWDK----------HAKVVRQTLN 164 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGGHHH----------HHHHHHHHHT
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHHHHH----------HHHHHHHHHc
Confidence 55555 999999999987555443 23344443 3799999999999976322110 0112222 22
Q ss_pred HHcCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754 149 QKINAFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 149 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
. ....+++++||+++.|++++|++|.+.+.
T Consensus 165 ~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 165 I-DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp C-CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred c-cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 1 12368999999999999999999988764
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=3.6e-27 Score=185.07 Aligned_cols=163 Identities=21% Similarity=0.297 Sum_probs=119.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEE---------EECCeEEEEEEEeCCCCCccccccccc
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI---------EVDSKQVELALWDTAGQEDYDRLRPLS 73 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~D~~g~~~~~~~~~~~ 73 (192)
..++||+++|.+|+|||||++++.+..+...+.++.+....... ..++....+.+||+||++.+...+..+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 35799999999999999999999998887666666554443221 112335789999999999999998889
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
++.+|++|+|+|+++. +.. ..|...+....++.|+++|+||+|+... +.+..++...+....+
T Consensus 119 l~~~d~ii~V~D~s~~---~~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~------------~~v~~~~~~~~~~~~~- 181 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD---SNK-HYWLRHIEKYGGKSPVIVVMNKIDENPS------------YNIEQKKINERFPAIE- 181 (535)
T ss_dssp HHSSEEEEEEECGGGG---GGH-HHHHHHHHHHSSSCCEEEEECCTTTCTT------------CCCCHHHHHHHCGGGT-
T ss_pred ccCCcEEEEEEeCCCc---hhH-HHHHHHHHHhCCCCCEEEEEECCCcccc------------cccCHHHHHHHHHhcC-
Confidence 9999999999999865 333 5788888888778999999999999763 4455666777777776
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 154 FAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.+++++||++|.|++++++.+.+.+....
T Consensus 182 ~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 182 NRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp TCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred CceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 48999999999999999999999887654
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=7.7e-27 Score=158.04 Aligned_cols=153 Identities=22% Similarity=0.251 Sum_probs=106.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccc--------ccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLR--------PLS 73 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~ 73 (192)
...+|+++|++|+|||||+++|.+..+.. ...++++ ......+.+++ ..+.+|||||+..+.... ...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 45799999999999999999999876432 1122222 22334445554 358999999986543211 124
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
++.+|++++|+|++++.++.. ..|+..+.... .+.|+++|+||+|+...... ++...
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-------------------~~~~~- 138 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETLG-------------------MSEVN- 138 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------------------EEEET-
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchhh-------------------hhhcc-
Confidence 678999999999999877653 35666655543 47999999999999642110 00112
Q ss_pred CceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 153 AFAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
..+++++||+++.|++++|++|.+.+..
T Consensus 139 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 139 GHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 2589999999999999999999887643
No 118
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.3e-26 Score=158.95 Aligned_cols=158 Identities=14% Similarity=0.148 Sum_probs=113.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCcccc------cccccCC
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDR------LRPLSYP 75 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~ 75 (192)
+.+++|+++|++|+|||||+++|.+..+.....++.+. .....+... +..+.+|||||+..+.. .+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 35789999999999999999999987654433333332 223333343 36899999999987752 2333443
Q ss_pred --CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754 76 --DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 76 --~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
.++++++|+|.++.+ .. ..|...+.. .+.|+++|+||+|+.... .+. .....+++.++
T Consensus 83 ~~~~~~~i~v~d~~~~~---~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~------------~~~-~~~~~~~~~~~- 142 (188)
T 2wjg_A 83 NEKPDLVVNIVDATALE---RN-LYLTLQLME--MGANLLLALNKMDLAKSL------------GIE-IDVDKLEKILG- 142 (188)
T ss_dssp HHCCSEEEEEEEGGGHH---HH-HHHHHHHHT--TTCCEEEEEECHHHHHHT------------TCC-CCHHHHHHHHT-
T ss_pred ccCCCEEEEEecchhHH---HH-HHHHHHHHh--cCCCEEEEEEhhhccccc------------cch-HHHHHHHHHhC-
Confidence 589999999988643 33 345555554 379999999999986521 111 24566777777
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 154 FAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.+++++||+++.|++++|+++.+.+....
T Consensus 143 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 143 VKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp SCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 59999999999999999999999887655
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=6.5e-27 Score=168.64 Aligned_cols=155 Identities=16% Similarity=0.160 Sum_probs=112.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc------cccccCC--
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDR------LRPLSYP-- 75 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~-- 75 (192)
..++|+++|++|+|||||+|+|.+........++. +.......+.. +..+.+|||||+..+.. .+..++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~-tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV-TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC-CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC-cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 46899999999999999999999876433333322 22233334455 66899999999987753 2333443
Q ss_pred CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754 76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA 155 (192)
Q Consensus 76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (192)
.+|++++|+|+++.++. ..|...+... +.|+++++||+|+... +.+. .....+++.++ ++
T Consensus 80 ~~d~vi~V~D~t~~e~~----~~~~~~l~~~--~~p~ilv~NK~Dl~~~------------~~~~-~~~~~l~~~lg-~~ 139 (272)
T 3b1v_A 80 RADSILNVVDATNLERN----LYLTTQLIET--GIPVTIALNMIDVLDG------------QGKK-INVDKLSYHLG-VP 139 (272)
T ss_dssp CCSEEEEEEEGGGHHHH----HHHHHHHHHT--CSCEEEEEECHHHHHH------------TTCC-CCHHHHHHHHT-SC
T ss_pred CCCEEEEEecCCchHhH----HHHHHHHHhc--CCCEEEEEEChhhCCc------------CCcH-HHHHHHHHHcC-CC
Confidence 69999999999986543 2454444443 8999999999998652 1122 24566777777 59
Q ss_pred EEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 156 YLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 156 ~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
++++||++|.|++++|+++.+.+..
T Consensus 140 vi~~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 140 VVATSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp EEECBTTTTBSHHHHHHHHHHSCTT
T ss_pred EEEEEccCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999887643
No 120
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=1.1e-26 Score=169.74 Aligned_cols=158 Identities=20% Similarity=0.214 Sum_probs=110.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeeeeEEEEECCeEEEEEEEeCCCCCcc--------cccccccC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQEDY--------DRLRPLSY 74 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~ 74 (192)
+..+|+++|++|+|||||+|+|++..+.... .+.++......+ ....+..+.+|||||.... .......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i-~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI-LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE-EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE-EEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 4678999999999999999999998876432 222222212211 2233568999999998763 33445678
Q ss_pred CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH-cCC
Q psy14754 75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK-INA 153 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 153 (192)
+.+|++++|+|++++.+ .....+...+....++.|+++|+||+|+...... .....+. .+.
T Consensus 85 ~~ad~il~VvD~~~~~~--~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~----------------~~~~~~~~~~~ 146 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPT--PEDELVARALKPLVGKVPILLVGNKLDAAKYPEE----------------AMKAYHELLPE 146 (301)
T ss_dssp SSCSEEEEEEETTSCCC--HHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH----------------HHHHHHHTSTT
T ss_pred hcCCEEEEEEECCCCCC--hHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH----------------HHHHHHHhcCc
Confidence 89999999999988633 2333444566655567999999999998753210 1112222 333
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 154 FAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
.+++++||+++.|++++++.+.+.+.+
T Consensus 147 ~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 147 AEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp SEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999887644
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=4.7e-27 Score=165.28 Aligned_cols=167 Identities=12% Similarity=0.123 Sum_probs=106.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeeeeEEEEEC-CeEEEEEEEeCCCCCc----------ccccc
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVD-SKQVELALWDTAGQED----------YDRLR 70 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~----------~~~~~ 70 (192)
...++|+++|.+|+|||||+++|++... .........+......... ..+..+.+|||||... +....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 3578999999999999999999999863 2221111122222222333 4456799999999533 22222
Q ss_pred cccC---CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-H
Q psy14754 71 PLSY---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-A 146 (192)
Q Consensus 71 ~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~ 146 (192)
..++ ..+|++++|+|++++ +......|+..+... +.|+++|+||+|+......... ..... .
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~----------~~~~~~~ 172 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRP--LTELDRRMIEWFAPT--GKPIHSLLTKCDKLTRQESINA----------LRATQKS 172 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSC--CCHHHHHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHH----------HHHHHHH
T ss_pred HHHHhcCcCcCEEEEEEeCCCC--CCHHHHHHHHHHHhc--CCCEEEEEeccccCChhhHHHH----------HHHHHHH
Confidence 2233 347889999999875 333334566666653 7999999999999763221111 11111 2
Q ss_pred HHHH-----cCCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 147 MAQK-----INAFAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 147 ~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
+... ....+++++||+++.|+++++++|.+.+.....
T Consensus 173 l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 173 LDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 2222 244689999999999999999999998876543
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=2e-26 Score=164.97 Aligned_cols=150 Identities=13% Similarity=0.187 Sum_probs=108.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCcccc----------cccccC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDR----------LRPLSY 74 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~ 74 (192)
.+|+++|.+|+|||||+|+|.+..+.....++.+. .....+...+ ..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998754433333332 2233334444 4889999999887764 233445
Q ss_pred --CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754 75 --PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 75 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
+.+|++|+|+|+++.+... .+...+... +.|+++|+||+|+..... . ......+.+.++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~----~l~~~l~~~--~~pvilv~NK~Dl~~~~~------------~-~~~~~~l~~~lg 140 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHL----YLTSQLFEL--GKPVVVALNMMDIAEHRG------------I-SIDTEKLESLLG 140 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHH----HHHHHHTTS--CSCEEEEEECHHHHHHTT------------C-EECHHHHHHHHC
T ss_pred hhCCCCEEEEEeeCCCchhHH----HHHHHHHHc--CCCEEEEEEChhcCCcCC------------c-HHHHHHHHHHcC
Confidence 7899999999999865443 233334433 799999999999875321 1 112345667777
Q ss_pred CceEEEeccCCcCCHHHHHHHHHHH
Q psy14754 153 AFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
+|++++||++|.|++++++++.+.
T Consensus 141 -~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 -CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp -SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred -CCEEEEECCCCCCHHHHHHHHHhh
Confidence 599999999999999999999876
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=7.2e-27 Score=168.99 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=110.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccc----------cc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLR----------PL 72 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----------~~ 72 (192)
.+++|+++|.+|+|||||+|+|++..+.....++.+.. ....+.. .+..+.+|||||+.++.... ..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC--SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe--CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 57899999999999999999999987544433333322 2223333 33578999999988876321 11
Q ss_pred c--CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754 73 S--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 73 ~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
+ .+.+|++++|+|+++.+... .|...+... +.|+++|+||+|+..... . ......+.+.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~----~~~~~l~~~--~~p~ivv~NK~Dl~~~~~------------~-~~~~~~l~~~ 140 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN------------I-RIEIDALSAR 140 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHH----HHHHHHHHH--TCCEEEEEECHHHHHHTT------------E-EECHHHHHHH
T ss_pred HHhhcCCCEEEEEecCCChHHHH----HHHHHHHhc--CCCEEEEEECccchhhhh------------H-HHHHHHHHHh
Confidence 1 26899999999999865432 344444444 799999999999865211 1 1124566677
Q ss_pred cCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 151 INAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
++ ++++++||++|.|+++++++|.+.+...
T Consensus 141 lg-~~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 141 LG-CPVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp HT-SCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred cC-CCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 77 5999999999999999999998876543
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=2.2e-25 Score=171.59 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=96.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccc--------ccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLR--------PLS 73 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~ 73 (192)
..++|+++|++|+|||||+|+|++..... ...++++ +.....+.++ +..+.+|||||+..+...+ ...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~--g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD--KTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEET--TEEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 35889999999999999999999876432 2222222 2223344444 3679999999987765433 346
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
++.+|++++|+|++++.+++.. ..+...+.. ..+.|+++|+||+|+..... .....+.+. +.
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~---------------~~~~~l~~~-~~ 371 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDEL-TEIRELKAA-HPAAKFLTVANKLDRAANAD---------------ALIRAIADG-TG 371 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHH-CTTSEEEEEEECTTSCTTTH---------------HHHHHHHHH-HT
T ss_pred cccCCEEEEEEECCCCcchhhh-HHHHHHHHh-cCCCCEEEEEECcCCCCccc---------------hhHHHHHhc-CC
Confidence 7899999999999998776543 233333332 23799999999999976422 111233333 12
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754 154 FAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
.+++++||+++.|+++++++|.+.+.
T Consensus 372 ~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 TEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHh
Confidence 58999999999999999999999886
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=1.1e-25 Score=162.83 Aligned_cols=157 Identities=22% Similarity=0.150 Sum_probs=111.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccc------cccccC--
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDR------LRPLSY-- 74 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~-- 74 (192)
..++|+++|++|+|||||+++|.+..+.....++.+... ...+...+ ..+.+|||||+..+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999999876443333333222 22333333 4589999999887765 333343
Q ss_pred CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754 75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF 154 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (192)
..+|++++|+|+++.+.. ..|...+... ...|+++|+||+|+..... ... ....+.+.++ +
T Consensus 80 ~~~d~vi~v~D~~~~~~~----~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~------------~~~-~~~~l~~~lg-~ 140 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMRN----LFLTLELFEM-EVKNIILVLNKFDLLKKKG------------AKI-DIKKMRKELG-V 140 (271)
T ss_dssp TCCSEEEEEEEGGGHHHH----HHHHHHHHHT-TCCSEEEEEECHHHHHHHT------------CCC-CHHHHHHHHS-S
T ss_pred cCCcEEEEEecCCcchhh----HHHHHHHHhc-CCCCEEEEEEChhcCcccc------------cHH-HHHHHHHHcC-C
Confidence 679999999999986321 1333333333 1399999999999865211 111 2556777777 5
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 155 AYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+++++||++|.|++++++.+.+.+...
T Consensus 141 ~~~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 141 PVIPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp CEEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999887554
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=9.1e-26 Score=173.96 Aligned_cols=162 Identities=16% Similarity=0.180 Sum_probs=112.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccC-ceeeeeeEEEEECCeEEEEEEEeCCC----------CCccccccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVP-TVFENYVADIEVDSKQVELALWDTAG----------QEDYDRLRP 71 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~~ 71 (192)
..+||+++|.+|+|||||+++|++..... ...+ ++.+.....+..++. .+.+||||| ++.|...+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 56899999999999999999999765322 2222 222333344455544 789999999 454544433
Q ss_pred -ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754 72 -LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 72 -~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
..++.+|++++|+|++++ +......|...+... +.|+++|+||+|+... +....++..+..+.
T Consensus 272 ~~~~~~ad~~llviD~~~~--~~~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~ 335 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEG--IIEQDKRIAGYAHEA--GKAVVIVVNKWDAVDK------------DESTMKEFEENIRD 335 (456)
T ss_dssp HHHHHHCSEEEEEEETTTC--CCHHHHHHHHHHHHT--TCEEEEEEECGGGSCC------------CSSHHHHHHHHHHH
T ss_pred HHHHhhCCEEEEEEeCCCC--cCHHHHHHHHHHHHc--CCCEEEEEEChhcCCC------------chHHHHHHHHHHHH
Confidence 356789999999999875 333434666666653 7999999999999763 23333444444333
Q ss_pred c----CCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 151 I----NAFAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 151 ~----~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
. +..+++++||++|.|++++|+.+.+.+....+
T Consensus 336 ~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 336 HFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp HCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred hcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 2 33689999999999999999999988766543
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=6.2e-26 Score=174.00 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=110.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCc-eeeeeeEEEEECCeEEEEEEEeCCCCCccc----------cccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPT-VFENYVADIEVDSKQVELALWDTAGQEDYD----------RLRP 71 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~ 71 (192)
..+||+++|++|+|||||+|+|++..... ...++ +.+.....+..++. .+.+|||||+.+.. ....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 45899999999999999999999887532 21222 22223334455543 58999999974322 2211
Q ss_pred -ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH-HHHHH
Q psy14754 72 -LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG-RAMAQ 149 (192)
Q Consensus 72 -~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (192)
..++.+|++++|+|++++.+.+.. .|...+... +.|+++|+||+|+.+.. ....++. ..+.+
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~~~~ 315 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKD------------ESTMKEFEENIRD 315 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCC------------TTHHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcc------------hHHHHHHHHHHHH
Confidence 356789999999999998776664 466666543 89999999999997632 1211122 22222
Q ss_pred Hc---CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 150 KI---NAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 150 ~~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.+ ...+++++||++|.|++++|+.+.+.+....
T Consensus 316 ~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 316 HFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp HCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred hcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 22 3368999999999999999999998877543
No 128
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=4.1e-25 Score=167.63 Aligned_cols=156 Identities=18% Similarity=0.214 Sum_probs=111.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cC-ceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc-------ccC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VP-TVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP-------LSY 74 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~~~ 74 (192)
..++|+++|++|+|||||+++|++..+.... .+ ++.......+..... ..+.+|||||+.++..... ..+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 5789999999999999999999988764222 22 222333444455443 2789999999988776533 367
Q ss_pred CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy14754 75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF 154 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (192)
+.+|++|+|+|++. ......|+..+... +.|+++|+||+|+..... . +...++++.++ +
T Consensus 112 ~~aD~vllVvD~~~----~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~------------~--~~~~~l~~~~g-~ 170 (423)
T 3qq5_A 112 YRADCGILVTDSAP----TPYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKA------------E--ELKGLYESRYE-A 170 (423)
T ss_dssp TSCSEEEEECSSSC----CHHHHHHHHHHHHT--TCCEEEECCCCTTTTCCC------------T--HHHHHSSCCTT-C
T ss_pred hcCCEEEEEEeCCC----hHHHHHHHHHHHhc--CCCEEEEEeCcCCCCccH------------H--HHHHHHHHHcC-C
Confidence 88999999999832 22234677777766 899999999999976432 1 34445555556 5
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 155 AYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+++++||+++.|++++|++|.+.+.+.
T Consensus 171 ~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 171 KVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999999999988543
No 129
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=1.9e-24 Score=158.21 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=108.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeeeeEEEEECCeEEEEEEEeCCCCC---------ccccccccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQE---------DYDRLRPLS 73 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~ 73 (192)
+..+|+++|++|+|||||+|+|++..+.... .+.++......+ +......+.+|||||+. .+.......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi-~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI-HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEE-EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEE-EEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 4568999999999999999999998754321 222221111111 22234578999999987 345556678
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
++.+|++++|+|+++ +......+...+.. .+.|+++++||+|+..... .......++.+.++.
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~------------~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKA------------DLLPHLQFLASQMNF 148 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHH------------HHHHHHHHHHTTSCC
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHH------------HHHHHHHHHHHhcCc
Confidence 899999999999976 44433333334433 3799999999999865211 112333445555553
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 154 FAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
.+++++||+++.|++++++.+.+.+.+
T Consensus 149 ~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 149 LDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 478999999999999999999877654
No 130
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.6e-25 Score=157.01 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=97.1
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCc---ccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCC---
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPD--- 76 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~--- 76 (192)
...++|+++|++|+|||||+++|.+..+... +.++.+. ......+.+||+||++.+...+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET--------TGGGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE--------EeeCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 3578999999999999999999999876542 2222222 2244578999999999998888777766
Q ss_pred -CCEEEEEEECC-ChhhhhchhhhhHHHHhh----hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754 77 -TDVILMCFSID-SPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 77 -~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
+|++|+|+|++ +++++....+.+...+.. ...+.|+++|+||+|+............ ...+...++..
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~------l~~~~~~~~~~ 155 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA------LESEIQKVIER 155 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHH------HHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHH------HHHHHHHHHHH
Confidence 89999999999 778888776444343332 2358999999999999775332111000 02333444444
Q ss_pred cCCceEEEeccCCcCC
Q psy14754 151 INAFAYLECSAKSKEG 166 (192)
Q Consensus 151 ~~~~~~~~~Sa~~~~g 166 (192)
.+ .+++++||+++.+
T Consensus 156 ~~-~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 RK-KSLNEVERKINEE 170 (218)
T ss_dssp HH-HHHHC--------
T ss_pred Hh-ccccccccccccc
Confidence 44 3666777776543
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=1.8e-24 Score=166.03 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=100.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCc-ccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcc---------cccccccC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVF-ENYVADIEVDSKQVELALWDTAGQEDY---------DRLRPLSY 74 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~ 74 (192)
.+|+++|.+|+|||||+|+|.+...... ..++.+ +.....+...+ ..+.+|||||.+.. ...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 4799999999999999999998875422 222222 22233444444 36899999997642 23345578
Q ss_pred CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH-HHHHHHcCC
Q psy14754 75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG-RAMAQKINA 153 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 153 (192)
+.+|++++|+|++++.+.. .+.+...+++. ++|+++|+||+|+.... .... .++. .++.
T Consensus 80 ~~ad~il~V~D~~~~~~~~--d~~i~~~l~~~--~~p~ilv~NK~D~~~~~---------------~~~~~~~~~-~lg~ 139 (439)
T 1mky_A 80 READLVLFVVDGKRGITKE--DESLADFLRKS--TVDTILVANKAENLREF---------------EREVKPELY-SLGF 139 (439)
T ss_dssp TTCSEEEEEEETTTCCCHH--HHHHHHHHHHH--TCCEEEEEESCCSHHHH---------------HHHTHHHHG-GGSS
T ss_pred HhCCEEEEEEECCCCCCHH--HHHHHHHHHHc--CCCEEEEEeCCCCcccc---------------HHHHHHHHH-hcCC
Confidence 8999999999998753322 22333444443 79999999999975310 0111 2333 3443
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 154 FAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.+++++||++|.|++++++++.+.+.+.
T Consensus 140 ~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 140 GEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp CSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 3689999999999999999999888643
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=5.7e-24 Score=161.59 Aligned_cols=169 Identities=12% Similarity=0.059 Sum_probs=113.4
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee-------EEE------------EECCeEEEEEEEeCCCC
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-------ADI------------EVDSKQVELALWDTAGQ 63 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-------~~~------------~~~~~~~~~~l~D~~g~ 63 (192)
..+++|+++|++++|||||+++|++................ ..+ ........+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 46799999999999999999999985433211000000000 000 00123378999999999
Q ss_pred CcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHH
Q psy14754 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEE 143 (192)
Q Consensus 64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 143 (192)
++|...+...+..+|++|+|+|++++.+..... .|+..+... ...|+++++||+|+.+....... .++
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~-~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~----------~~~ 153 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHFVALGII-GVKNLIIVQNKVDVVSKEEALSQ----------YRQ 153 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHH-HHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHH----------HHH
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHH-HHHHHHHHc-CCCCEEEEEECccccchHHHHHH----------HHH
Confidence 999998888899999999999999875444443 444444433 13599999999999763211110 112
Q ss_pred HHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 144 GRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 144 ~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
..++.... ..++++++||++|+|+++++++|.+.+....+
T Consensus 154 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~ 195 (403)
T 3sjy_A 154 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYR 195 (403)
T ss_dssp HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCC
Confidence 22222221 23689999999999999999999987765543
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=1.1e-24 Score=161.40 Aligned_cols=159 Identities=21% Similarity=0.242 Sum_probs=112.5
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCC----cccccccccCC---CCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQE----DYDRLRPLSYP---DTD 78 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~~~---~~~ 78 (192)
+|+++|.+|||||||+++|.+..+.....+.++ ......+.++. ...+.+|||||.. .+......+++ .++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 688999999999999999998764322222222 11122233332 2478999999953 23333334433 499
Q ss_pred EEEEEEECCC---hhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy14754 79 VILMCFSIDS---PDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 79 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
++|+|+|+++ .++++.+. .|...+..+. .+.|+++|+||+|+... .+...++.+.+.
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----------------~e~~~~l~~~l~ 301 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEA----------------AENLEAFKEKLT 301 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTH----------------HHHHHHHHHHCC
T ss_pred EEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCC----------------HHHHHHHHHHhh
Confidence 9999999998 66777773 6777777654 47999999999998642 123455666655
Q ss_pred C-ceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 153 A-FAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 153 ~-~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
. .+++++||++++|+++++++|.+.+.+.+.
T Consensus 302 ~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 302 DDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred cCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 3 588999999999999999999999876544
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.2e-23 Score=157.59 Aligned_cols=160 Identities=19% Similarity=0.162 Sum_probs=111.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccccc---------cccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRL---------RPLS 73 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~---------~~~~ 73 (192)
..++|+++|++|+|||||+++|.+........+..+... ...+.. .+..+.+|||||...+... ....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED--GYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE--TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe--cCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 467999999999999999999998764322222222111 112222 2457999999997553211 1123
Q ss_pred CCCCCEEEEEEECCChh--hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy14754 74 YPDTDVILMCFSIDSPD--SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI 151 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (192)
...+|++++|+|++++. ++... ..|+..+.....+.|+++|+||+|+..... .++...++...
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~--------------~~~~~~~~~~~ 308 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN--------------IKRLEKFVKEK 308 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH--------------HHHHHHHHHHT
T ss_pred HhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH--------------HHHHHHHHHhc
Confidence 34689999999998876 44544 357777666555899999999999865211 12334445455
Q ss_pred CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 152 NAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+ .+++++||++|+|+++++++|.+.+...
T Consensus 309 ~-~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 309 G-LNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp T-CCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred C-CCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 5 5899999999999999999999988654
No 135
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=1.8e-24 Score=166.66 Aligned_cols=152 Identities=22% Similarity=0.281 Sum_probs=107.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCcee-eeeeEEEEECCeEEEEEEEeCCCCC-cccccc--------ccc
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVF-ENYVADIEVDSKQVELALWDTAGQE-DYDRLR--------PLS 73 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~~~--------~~~ 73 (192)
.++|+++|.+|+|||||+|+|.+..... ...++++ +.....+.++ +..+.+|||||.. .+.... ...
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~--g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC--CeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999976432 2233332 2334444554 3578999999987 554321 235
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
++.+|++|+|+|++++.+++.. .++..+ .+.|+++|+||+|+... ...++...+.. .+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~--------------~~~~~~~~~~~-~~- 378 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK--------------INEEEIKNKLG-TD- 378 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC--------------CCHHHHHHHHT-CS-
T ss_pred hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc--------------cCHHHHHHHhc-CC-
Confidence 6789999999999987665543 233333 37899999999999642 12223333322 22
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 154 FAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
.+++++||+++.|+++++++|.+.+..
T Consensus 379 ~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 379 RHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp TTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 589999999999999999999997653
No 136
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=1.8e-25 Score=173.61 Aligned_cols=163 Identities=20% Similarity=0.229 Sum_probs=112.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
+++++|+++|++++|||||+++|.+..+.....++.+... ...+... .+..+.+|||||++.|...+...++.+|++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 3578999999999999999999998665444333333222 1111111 2347899999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHH---HHHc-CCceEE
Q psy14754 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM---AQKI-NAFAYL 157 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 157 (192)
+|+|++++...+.. .++..+... +.|+++++||+|+...... ... .+...+ ...+ +.++++
T Consensus 81 LVVDa~dg~~~qt~--e~l~~~~~~--~vPiIVViNKiDl~~~~~~----------~v~-~~l~~~~~~~e~~~~~~~iv 145 (537)
T 3izy_P 81 LVVAADDGVMKQTV--ESIQHAKDA--HVPIVLAINKCDKAEADPE----------KVK-KELLAYDVVCEDYGGDVQAV 145 (537)
T ss_dssp EECBSSSCCCHHHH--HHHHHHHTT--TCCEEECCBSGGGTTTSCC----------SSS-SHHHHTTSCCCCSSSSEEEC
T ss_pred EEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEecccccccchH----------HHH-HHHHhhhhhHHhcCCCceEE
Confidence 99999986443332 223333332 7899999999999754321 111 111111 1112 235899
Q ss_pred EeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 158 ECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
++||++|.|++++++++...+...
T Consensus 146 ~vSAktG~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 146 HVSALTGENMMALAEATIALAEML 169 (537)
T ss_dssp CCCSSSSCSSHHHHHHHHHHHTTC
T ss_pred EEECCCCCCchhHHHHHHHhhhcc
Confidence 999999999999999999876543
No 137
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=6.4e-24 Score=152.66 Aligned_cols=167 Identities=13% Similarity=0.161 Sum_probs=105.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeee--eEEEEECCeEEEEEEEeCCCCCccccccc---------
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENY--VADIEVDSKQVELALWDTAGQEDYDRLRP--------- 71 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~--------- 71 (192)
..++|+|+|++|+|||||+++|++... .....++..+.. ....... +..+.+|||||+..+.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 568999999999999999999998773 333333312222 2222333 35799999999876543322
Q ss_pred --ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEee-cccccCCccchhhhhhccCCCCCHHHHH
Q psy14754 72 --LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGN-KKDLRNDPNTIKELNKMKQEPVKPEEGR 145 (192)
Q Consensus 72 --~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (192)
..++.+|++|+|+|+++ +......+...+...+. ..|.++++| |+|+.... ....+.. ....+..
T Consensus 99 ~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~-----~~~~~~~ 169 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHD-----SDNKALS 169 (260)
T ss_dssp HHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHH-----CCCHHHH
T ss_pred HHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHh-----cchHHHH
Confidence 25688999999999986 33332333344433221 467777777 99997431 1111111 0113344
Q ss_pred HHHHHcCCc--eE--EEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 146 AMAQKINAF--AY--LECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 146 ~~~~~~~~~--~~--~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.+...++.. ++ +++||+++.|++++|++|.+.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 170 KLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 455554431 12 7899999999999999999887654
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=1.4e-24 Score=166.45 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=100.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCC--------cccccccccCCC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE--------DYDRLRPLSYPD 76 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~ 76 (192)
..+|+++|.+|+|||||+|+|.+..........+.+...........+..+.+|||||++ .+...+...++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 368999999999999999999987765433222333333333445555689999999985 455556667889
Q ss_pred CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy14754 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY 156 (192)
Q Consensus 77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (192)
+|++|+|+|+.++.+... ..+...+++ .++|+++|+||+|+...... . .++. .++.-++
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~~-----------~-----~~~~-~lg~~~~ 141 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRAN-----------I-----YDFY-SLGFGEP 141 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC-----C-----------C-----CSSG-GGSSCCC
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchhh-----------H-----HHHH-HcCCCCe
Confidence 999999999988644332 344455544 37999999999998653110 0 0111 2232368
Q ss_pred EEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 157 LECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
+++||++|.|++++++++.+.+.+
T Consensus 142 ~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 142 YPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp EECBTTTTBTHHHHHHHHHHTGGG
T ss_pred EEEeCcCCCChHHHHHHHHHhcCc
Confidence 999999999999999999988864
No 139
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=1.5e-23 Score=155.86 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=96.0
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCCh----------hhhhchhhhhHHHHhh--hCCCCcEEEEeecc
Q psy14754 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----------DSLENIPEKWTPEVKH--FCPNVPIILVGNKK 119 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~ 119 (192)
.+.+.+||++|++.++..|..++++++++|+|+|+++. .++.+.. .|+..+.. .+++.|++|++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~-~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM-KLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHH-HHHHHHHcCccccCCcEEEEEECc
Confidence 57899999999999999999999999999999999994 4566664 34444332 34689999999999
Q ss_pred cccCCccchhhhhhcc---CCCCCHHHHHHHHHH----------cCCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 120 DLRNDPNTIKELNKMK---QEPVKPEEGRAMAQK----------INAFAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 120 D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
|+.........+.... ......+++..++.. ...+++++|||+++.||+++|+++.+.+.....
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence 9964221111111100 113566777777752 233689999999999999999999999876554
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=3e-24 Score=164.78 Aligned_cols=154 Identities=21% Similarity=0.234 Sum_probs=99.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccc--------ccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLR--------PLS 73 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~ 73 (192)
..++|+++|++|+|||||+|+|++..... ...++++ +.....+.+++ ..+.+|||||...+...+ ...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 36789999999999999999999865432 2223322 22233344444 578999999976654332 235
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy14754 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
++.+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+....... . ... + ...
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~~~----~--~~~--------~---~~~ 357 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQLIT----S--LEY--------P---ENI 357 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGGST----T--CCC--------C---TTC
T ss_pred hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchhhH----H--HHH--------h---ccC
Confidence 788999999999998644333 34555543 47999999999997643211 0 000 0 022
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 154 FAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.+++++||+++.|+++++++|.+.+....
T Consensus 358 ~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 358 TQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 58999999999999999999999886543
No 141
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=1.6e-23 Score=162.06 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=108.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCC-------CCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccC
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQ-------FPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSY 74 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 74 (192)
+.+++|+++|++++|||||+++|.+.. ......+..+... ...+.++ +..+.+|||||+++|...+...+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHHHH
Confidence 468999999999999999999999876 1111111111111 1122333 36899999999999988888888
Q ss_pred CCCCEEEEEEECCCh---hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy14754 75 PDTDVILMCFSIDSP---DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI 151 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (192)
..+|++|+|+|++++ ++.+. +..+... +.|.++++||+|+.+.... ....++..++....
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~-----l~~~~~~--~ip~IvviNK~Dl~~~~~~----------~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEH-----MLILDHF--NIPIIVVITKSDNAGTEEI----------KRTEMIMKSILQST 157 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHH-----HHHHHHT--TCCBCEEEECTTSSCHHHH----------HHHHHHHHHHHHHS
T ss_pred hhCCEEEEEEecCCCccHHHHHH-----HHHHHHc--CCCEEEEEECCCcccchhH----------HHHHHHHHHHHhhh
Confidence 999999999999883 33322 2233333 7899999999999752110 01122334444333
Q ss_pred ---CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 152 ---NAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 152 ---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
...+++++||++|+|+++++++|.+.+...
T Consensus 158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~ 190 (482)
T 1wb1_A 158 HNLKNSSIIPISAKTGFGVDELKNLIITTLNNA 190 (482)
T ss_dssp SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHHhhcCc
Confidence 236899999999999999999999987533
No 142
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.89 E-value=5e-23 Score=162.21 Aligned_cols=173 Identities=17% Similarity=0.228 Sum_probs=109.1
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCCCCCccc----CceeeeeeEE-------------EEECCeEEEEEEEeCCCC
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV----PTVFENYVAD-------------IEVDSKQVELALWDTAGQ 63 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~-------------~~~~~~~~~~~l~D~~g~ 63 (192)
|+.+.++|+++|++++|||||+++|.+..+..... ++.+..+... ...+.....+.+|||||+
T Consensus 1 ~~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh 80 (594)
T 1g7s_A 1 MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (594)
T ss_dssp CEECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CCCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence 56788999999999999999999998765433211 1111111000 000011125899999999
Q ss_pred CcccccccccCCCCCEEEEEEECCC---hhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccch---hhhhhccCC
Q psy14754 64 EDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI---KELNKMKQE 137 (192)
Q Consensus 64 ~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~ 137 (192)
+.|...+...++.+|++|+|+|+++ +++++.+ ..+... +.|+++++||+|+....... ...+.....
T Consensus 81 e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-----~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~ 153 (594)
T 1g7s_A 81 EAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ 153 (594)
T ss_dssp SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-----HHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-----HHHHHc--CCeEEEEecccccccccccccCCchHHHHHHh
Confidence 9999999988999999999999998 4444333 223332 79999999999997532110 000000000
Q ss_pred CCC-----H----HHHHHHHHH-------------cCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 138 PVK-----P----EEGRAMAQK-------------INAFAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 138 ~~~-----~----~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
... . +....+.+. ...+|++++||++|.|+++++++|...+..
T Consensus 154 ~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 000 0 000111111 123589999999999999999999987653
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=1.6e-22 Score=153.91 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=102.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCC---CCcccC--ceeeeee-EEEEE-------------C--C----eEEEEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQF---PEVYVP--TVFENYV-ADIEV-------------D--S----KQVELALW 58 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~-~~~~~-------------~--~----~~~~~~l~ 58 (192)
..++|+++|+.++|||||+++|.+... .....+ +....+. ..+.. + + ....+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 468999999999999999999985432 222122 1111111 11100 1 1 23789999
Q ss_pred eCCCCCcccccccccCCCCCEEEEEEECCCh----hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhc
Q psy14754 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKM 134 (192)
Q Consensus 59 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 134 (192)
||||+++|.......+..+|++|+|+|++++ ++.+.+ ..+.. ....|+++++||+|+......
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~-l~~~~iivv~NK~Dl~~~~~~------- 153 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-----MALEI-LGIDKIIIVQNKIDLVDEKQA------- 153 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-----HHHHH-TTCCCEEEEEECTTSSCTTTT-------
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-----HHHHH-cCCCeEEEEEEccCCCCHHHH-------
Confidence 9999999888777778889999999999964 333322 22222 223589999999999764211
Q ss_pred cCCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 135 KQEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 135 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
....++..++...+ ...+++++||++|+|+++++++|.+.+....
T Consensus 154 ---~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~ 200 (408)
T 1s0u_A 154 ---EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPK 200 (408)
T ss_dssp ---TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCC
T ss_pred ---HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 11233444554432 2468999999999999999999998776543
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.89 E-value=7e-23 Score=156.91 Aligned_cols=161 Identities=13% Similarity=0.097 Sum_probs=103.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCc-------------------------------ccCceeeeeeEEEEECCe
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV-------------------------------YVPTVFENYVADIEVDSK 51 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 51 (192)
...++|+++|++++|||||+++|++..-... ..+.. +.......+...
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~Gi-Tid~~~~~~~~~ 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGK-TVEVGRAYFETE 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCc-eEEEeEEEEecC
Confidence 3578999999999999999999965421110 00111 111122234445
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhh---hh--chhhhhHHHHhhhCCCCc-EEEEeecccccCCc
Q psy14754 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE--NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDP 125 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~--~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 125 (192)
+..+.+|||||+++|...+...++.+|++|+|+|++++.. ++ ......+..+... +.| +++++||+|+....
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~--~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPTVN 171 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc--CCCeEEEEeecCCCcccc
Confidence 5689999999999999888888999999999999998532 11 1111222223222 677 99999999986532
Q ss_pred cchhhhhhccCCCCCHHHHHHHHHHcC-----CceEEEeccCCcCCHHHHHH
Q psy14754 126 NTIKELNKMKQEPVKPEEGRAMAQKIN-----AFAYLECSAKSKEGVREVFE 172 (192)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~~~~ 172 (192)
....... ....+...+...++ .++++++||++|.|++++++
T Consensus 172 ~~~~~~~------~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 172 WSNERYE------ECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred hHHHHHH------HHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2111111 11223334444433 35899999999999999654
No 145
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=2e-23 Score=155.10 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=92.1
Q ss_pred eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECC----------ChhhhhchhhhhHHHHhh--hCCCCcEEEEeec
Q psy14754 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKH--FCPNVPIILVGNK 118 (192)
Q Consensus 51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK 118 (192)
..+.+++|||+|++.++..|..++++++++|+|||++ +.+++++.. .|+..+.. ..++.|+++++||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~-~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHH-HHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHH-HHHHHHHhccccCCCeEEEEEEC
Confidence 5689999999999999999999999999999999998 667777775 44444432 2468999999999
Q ss_pred ccccCCccchhh------hhhccCC---CCCHHHHHHHHHH---------------cCCceEEEeccCCcCCHHHHHHHH
Q psy14754 119 KDLRNDPNTIKE------LNKMKQE---PVKPEEGRAMAQK---------------INAFAYLECSAKSKEGVREVFETA 174 (192)
Q Consensus 119 ~D~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gi~~~~~~i 174 (192)
+|+......... ..+..+. ....+++..++.. ...+.+++|||+++.||+++|+++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 999643211000 0000000 0123555565332 122457899999999999999999
Q ss_pred HHHHhhhccc
Q psy14754 175 TRAALQVKKK 184 (192)
Q Consensus 175 ~~~~~~~~~~ 184 (192)
.+.+.....+
T Consensus 340 ~~~I~~~~l~ 349 (354)
T 2xtz_A 340 DETLRRRNLL 349 (354)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988765543
No 146
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=9.3e-23 Score=149.59 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=96.1
Q ss_pred CeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECC----------ChhhhhchhhhhHHHHhh-hCCCCcEEEEeec
Q psy14754 50 SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKH-FCPNVPIILVGNK 118 (192)
Q Consensus 50 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK 118 (192)
.+++.+++||++|++.++..|..++++++++|+|+|++ +.+++.+....|...... ...+.|+++++||
T Consensus 164 ~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 164 LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK 243 (327)
T ss_dssp ETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred eeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEEC
Confidence 34578999999999999999999999999999999776 444555554333333332 3468999999999
Q ss_pred ccccCCccchhhh----hhccCCCCCHHHHHHHHH----------HcCCceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754 119 KDLRNDPNTIKEL----NKMKQEPVKPEEGRAMAQ----------KINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 119 ~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+|+.........+ .+........+++..+.. ..+ +.++++||+++.||+++|+.+.+.+....-+
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~ 322 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQLNLK 322 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHHhHH
Confidence 9997533211111 112222456677777642 223 5788999999999999999999999876543
No 147
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.89 E-value=9e-24 Score=162.89 Aligned_cols=162 Identities=18% Similarity=0.260 Sum_probs=107.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+++.+|+++|++++|||||+++|.+..+.....+..+.... ...+...+..+.+|||||++.|...+...+..+|++++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~-~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIG-AYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSS-CCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEE-EEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 46789999999999999999999876544332222221111 01122233578999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc-CCceEEEecc
Q psy14754 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI-NAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 161 (192)
|+|++++...+.. .++..... .+.|+++++||+|+...+... ....+..... +.+.+ +.++++++||
T Consensus 81 VVda~~g~~~qT~--e~l~~~~~--~~vPiIVviNKiDl~~~~~~~-v~~~l~~~~~-------~~~~~~~~~~~v~vSA 148 (501)
T 1zo1_I 81 VVAADDGVMPQTI--EAIQHAKA--AQVPVVVAVNKIDKPEADPDR-VKNELSQYGI-------LPEEWGGESQFVHVSA 148 (501)
T ss_dssp EEETTTBSCTTTH--HHHHHHHH--TTCCEEEEEECSSSSTTCCCC-TTCCCCCCCC-------CTTCCSSSCEEEECCT
T ss_pred EeecccCccHHHH--HHHHHHHh--cCceEEEEEEeccccccCHHH-HHHHHHHhhh-------hHHHhCCCccEEEEee
Confidence 9999885322222 22223332 278999999999997643210 0000000000 11122 2368999999
Q ss_pred CCcCCHHHHHHHHHHH
Q psy14754 162 KSKEGVREVFETATRA 177 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~ 177 (192)
++|.|++++++++...
T Consensus 149 ktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 149 KAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTCTTCTTHHHHTTTT
T ss_pred eeccCcchhhhhhhhh
Confidence 9999999999998754
No 148
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=8.7e-23 Score=156.67 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=103.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccc-----------
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLR----------- 70 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----------- 70 (192)
..++|+++|++|+|||||+|+|++....... .++++ +.....+.+++. .+.+|||||...+....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 3589999999999999999999987653211 22222 222334455554 67899999975433221
Q ss_pred -cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-HHH
Q psy14754 71 -PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-AMA 148 (192)
Q Consensus 71 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 148 (192)
...++.+|++++++|++++.+.+. ..+...+... +.|+++|+||+|+..... ....+.. .+.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~~--~~~~ilv~NK~Dl~~~~~------------~~~~~~~~~~~ 320 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQD--QRMAGLMERR--GRASVVVFNKWDLVVHRE------------KRYDEFTKLFR 320 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSTTGG------------GCHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCCchh------------hHHHHHHHHHH
Confidence 123456899999999987644433 2344444433 799999999999975321 1111111 222
Q ss_pred HHc---CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 149 QKI---NAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 149 ~~~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+.+ ...+++++||++|.|++++|+.+.+.+....
T Consensus 321 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 321 EKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp HHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 222 3358999999999999999999988776543
No 149
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=1e-22 Score=160.33 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=109.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC--CCCc-----ccC-------ceeeee--eEEEEE---CCeEEEEEEEeCCCCC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQ--FPEV-----YVP-------TVFENY--VADIEV---DSKQVELALWDTAGQE 64 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~-----~~~-------~~~~~~--~~~~~~---~~~~~~~~l~D~~g~~ 64 (192)
.-.+|+++|+.++|||||+++|+... .... ... .+.+.. ...+.+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 34689999999999999999998632 1110 000 000111 111222 4456899999999999
Q ss_pred cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH
Q psy14754 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG 144 (192)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 144 (192)
+|...+...++.+|++|+|+|++++.+.+.. ..|...... +.|+++++||+|+..... ....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a~~--------------~~v~ 144 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAADP--------------ERVA 144 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTCCH--------------HHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCcccccH--------------HHHH
Confidence 9998888889999999999999987665555 345544433 789999999999976321 2223
Q ss_pred HHHHHHcCC--ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 145 RAMAQKINA--FAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 145 ~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.++.+.++. .+++++||++|.|+++++++|.+.+....
T Consensus 145 ~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 145 EEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp HHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred HHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 445555442 25899999999999999999999887654
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.88 E-value=3.1e-23 Score=161.54 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=82.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC---------------ccc------CceeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE---------------VYV------PTVFENYVADIEVDSKQVELALWDTAG 62 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~g 62 (192)
...+|+++|++|+|||||+++|+...... ... ....+.......+...+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 45799999999999999999997211100 000 011111122223333457899999999
Q ss_pred CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
+.+|...+...++.+|++|+|+|++++.+.+.. .++..+... ++|+++|+||+|+....
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~--~~~~~~~~~--~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI--KLMEVCRLR--HTPIMTFINKMDRDTRP 150 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHHTT--TCCEEEEEECTTSCCSC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCcccc
Confidence 999999998999999999999999986544443 334444443 79999999999996543
No 151
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=1.5e-23 Score=161.63 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=102.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC--------CCcccccccccCC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG--------QEDYDRLRPLSYP 75 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~~~~~ 75 (192)
...+|+++|.+|+|||||+|+|.+..+.........+...........+..+.+||||| ++.+...+..+++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 45799999999999999999999977654333333333333444555667899999999 4455566667778
Q ss_pred CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754 76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA 155 (192)
Q Consensus 76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (192)
.+|++|+|+|..++ +......+...+++ .+.|+++|+||+|+...... ..++. .++.-+
T Consensus 102 ~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~~----------------~~e~~-~lg~~~ 160 (456)
T 4dcu_A 102 EADVIIFMVNGREG--VTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRAN----------------IYDFY-SLGFGE 160 (456)
T ss_dssp HCSEEEEEEESSSC--SCHHHHHHHHHHTT--CCSCEEEEEECC-------------------------CCSG-GGSSSS
T ss_pred hCCEEEEEEeCCCC--CChHHHHHHHHHHH--cCCCEEEEEECccchhhhhh----------------HHHHH-HcCCCc
Confidence 89999999998764 33443445555554 38999999999998642110 00111 112225
Q ss_pred EEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 156 YLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 156 ~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
.+++||++|.|++++++.+.+.+..
T Consensus 161 ~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 161 PYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred eEEeecccccchHHHHHHHHhhccc
Confidence 6799999999999999999887754
No 152
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=5.7e-22 Score=155.87 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=111.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC--CCCCc-----cc--------Cceee-eeeEEEEE---CCeEEEEEEEeCCCCC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKD--QFPEV-----YV--------PTVFE-NYVADIEV---DSKQVELALWDTAGQE 64 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~-----~~--------~~~~~-~~~~~~~~---~~~~~~~~l~D~~g~~ 64 (192)
.-.+|+++|+.++|||||+++|+.. ..... .. ...+. .....+.+ ++..+.+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4569999999999999999999762 11110 00 00000 00111222 3456889999999999
Q ss_pred cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH
Q psy14754 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG 144 (192)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 144 (192)
+|...+...++.+|++|+|+|++++.+.+.. ..|...... +.|+++++||+|+..... ....
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~~---~ipiIvviNKiDl~~a~~--------------~~v~ 146 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVEQ---DLVIIPVINKIDLPSADV--------------DRVK 146 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHHT---TCEEEEEEECTTSTTCCH--------------HHHH
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHC---CCCEEEEEeccCccccCH--------------HHHH
Confidence 9988888888999999999999997666555 345544432 799999999999976321 1223
Q ss_pred HHHHHHcCC--ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 145 RAMAQKINA--FAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 145 ~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.++.+.++. .+++++||++|.|+++++++|.+.+....
T Consensus 147 ~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 147 KQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 344444442 25899999999999999999999887654
No 153
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=1e-22 Score=154.90 Aligned_cols=167 Identities=16% Similarity=0.159 Sum_probs=112.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhC--------CCCCcc--c------CceeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKD--------QFPEVY--V------PTVFENYVADIEVDSKQVELALWDTAGQEDY 66 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~--------~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 66 (192)
...++|+++|++++|||||+++|.+. .+.... . ....+.......+......+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 35689999999999999999999873 211110 0 0111111223334445568899999999999
Q ss_pred cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHH
Q psy14754 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR 145 (192)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (192)
.......+..+|++|+|+|++++...+. ..++..+... +.| +++++||+|+..+....+ ....+..
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~---------~~~~~~~ 155 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPELLD---------LVEMEVR 155 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHHHHH---------HHHHHHH
Confidence 8888888899999999999988643222 2455555443 788 899999999975211100 0112344
Q ss_pred HHHHHcC----CceEEEeccCCcCC------------------HHHHHHHHHHHHhhhc
Q psy14754 146 AMAQKIN----AFAYLECSAKSKEG------------------VREVFETATRAALQVK 182 (192)
Q Consensus 146 ~~~~~~~----~~~~~~~Sa~~~~g------------------i~~~~~~i~~~~~~~~ 182 (192)
++...++ ..+++++||++|.| ++++++.|...+....
T Consensus 156 ~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~ 214 (405)
T 2c78_A 156 DLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 214 (405)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCC
Confidence 5555554 26899999999987 7888888887765443
No 154
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.88 E-value=1.5e-22 Score=153.45 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=110.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC-------CCCc--c-------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQ-------FPEV--Y-------VPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
.++||+++|++++|||||+++|.+.. +... . .... +.......+......+.+|||||+++|.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~gi-Ti~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI-TINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTE-EEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCc-EEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 36899999999999999999998741 1110 0 0111 1111122344445679999999999988
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy14754 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (192)
......++.+|++|+|+|+++....+.. +.| ..+... +.| +++++||+|+..+....+ ....+..+
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~~--~vp~iivviNK~Dl~~~~~~~~---------~~~~~~~~ 147 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI--GVEHVVVYVNKADAVQDSEMVE---------LVELEIRE 147 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCSCHHHHH---------HHHHHHHH
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHHc--CCCeEEEEEECcccCCCHHHHH---------HHHHHHHH
Confidence 8888888999999999999985332222 223 344333 788 789999999975211100 01234455
Q ss_pred HHHHcC----CceEEEeccCCcCC----------HHHHHHHHHHHHhhhc
Q psy14754 147 MAQKIN----AFAYLECSAKSKEG----------VREVFETATRAALQVK 182 (192)
Q Consensus 147 ~~~~~~----~~~~~~~Sa~~~~g----------i~~~~~~i~~~~~~~~ 182 (192)
+...++ .++++++||+++.| ++++++.|.+.+..+.
T Consensus 148 ~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~ 197 (397)
T 1d2e_A 148 LLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT 197 (397)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence 555554 36899999999774 8999999988776543
No 155
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=2.9e-22 Score=142.35 Aligned_cols=166 Identities=17% Similarity=0.180 Sum_probs=101.0
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCc--eeee-eeEEEEECCeEEEEEEEeCCCCCc-----------ccc
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT--VFEN-YVADIEVDSKQVELALWDTAGQED-----------YDR 68 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~ 68 (192)
...+||+++|++|+|||||+|+|++..+.....++ .+.. ........ +..+.+|||||... +..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 35799999999999999999999998876554432 2211 12223333 35789999999432 333
Q ss_pred cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH
Q psy14754 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR 145 (192)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (192)
.+...++.+|++|+|+|+++... ....|+..+...+ ...|+++|+||+|+.........+. ...+..+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~---~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~------~~~~~l~ 175 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE---EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLR------EAPEDIQ 175 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS---HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------------CHHHH
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH---HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHH------hchHHHH
Confidence 34445678999999999875322 1123333332211 1469999999999876432111110 1124566
Q ss_pred HHHHHcCCceEEEeccCC-----cCCHHHHHHHHHHHHhh
Q psy14754 146 AMAQKINAFAYLECSAKS-----KEGVREVFETATRAALQ 180 (192)
Q Consensus 146 ~~~~~~~~~~~~~~Sa~~-----~~gi~~~~~~i~~~~~~ 180 (192)
.+.+.++. .++.+++.. ..++.++++.+.+.+.+
T Consensus 176 ~l~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 176 DLMDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 77777774 566665553 37899999998877754
No 156
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.87 E-value=7.2e-22 Score=147.30 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=89.5
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCC----------hhhhhchhhhhHHHHhh-hCCCCcEEEEeeccc
Q psy14754 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH-FCPNVPIILVGNKKD 120 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D 120 (192)
.+.+.+|||+|++.++..|..++++++++|+|+|+++ .+++......|...... .+.+.|+|+++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4789999999999999999999999999999999999 56777775444444432 346899999999999
Q ss_pred ccCCccchhhhhhc----cCCCCCHHHHHHHHH-------H---cCCceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy14754 121 LRNDPNTIKELNKM----KQEPVKPEEGRAMAQ-------K---INAFAYLECSAKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 121 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~---~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+.........+... .....+.+++..++. . ...+.+++|||+++.||+++|+++.+.+....-+
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~ 357 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 357 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHH
Confidence 96432111111111 111245666666651 0 1225789999999999999999999998876543
No 157
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=2.2e-22 Score=143.42 Aligned_cols=169 Identities=11% Similarity=0.095 Sum_probs=102.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce-eeeeeEEEEECCeEEEEEEEeCCCCC--------ccccccccc
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQE--------DYDRLRPLS 73 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~ 73 (192)
..++||+++|.+|+|||||+|++++........++. .+...........+..+.+|||||.. .+......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 357999999999999999999999988765433332 22222222223334678999999963 222222222
Q ss_pred ----CCCCCEEEEEEECCChhhhhchhhhhHHHHhhh----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH
Q psy14754 74 ----YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR 145 (192)
Q Consensus 74 ----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (192)
.+.+|++|+|+|++. +......++..+... ..+.|+++++||.|+..... ...+.. ......+
T Consensus 99 ~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~-~~~l~~-----~~~~~l~ 169 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGR---FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSL-HDYVSN-----TENRALR 169 (247)
T ss_dssp HHHHTTCCSEEEEEEETTB---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCH-HHHHHH-----CCCHHHH
T ss_pred HHhcCCCCCEEEEEEeCCC---CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCH-HHHHhh-----cccHHHH
Confidence 389999999999975 222222333333332 23689999999999965321 111100 1113456
Q ss_pred HHHHHcCCceEEEeccCC-----cCCHHHHHHHHHHHHhhh
Q psy14754 146 AMAQKINAFAYLECSAKS-----KEGVREVFETATRAALQV 181 (192)
Q Consensus 146 ~~~~~~~~~~~~~~Sa~~-----~~gi~~~~~~i~~~~~~~ 181 (192)
.+.+.++. .++.+++.. +.|+++|++.|.+.+.+.
T Consensus 170 ~l~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 170 ELVAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HHHHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 66777664 455454433 689999999998887654
No 158
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=1.4e-22 Score=157.09 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=97.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc------------------------------cCceeeeeeEEEEECCeEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY------------------------------VPTVFENYVADIEVDSKQV 53 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 53 (192)
..+||+++|++++|||||+++|++....... ...+.+.......+.....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 4689999999999999999999865211000 0001111112223444567
Q ss_pred EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhch-----hhhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy14754 54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI-----PEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI 128 (192)
Q Consensus 54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 128 (192)
.+.+|||||+++|...+...++.+|++|+|+|++++.....+ .......... ....|+++|+||+|+......
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~~~- 189 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWSQQ- 189 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGTTCHH-
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcccchHH-
Confidence 899999999999999888899999999999999986443221 1112222222 223579999999999763210
Q ss_pred hhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHH
Q psy14754 129 KELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVRE 169 (192)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~ 169 (192)
... ....+...+...++ ..+++++||++|+|+++
T Consensus 190 -~~~------~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 190 -RFE------EIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp -HHH------HHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred -HHH------HHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 000 00122223333222 36899999999999975
No 159
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.87 E-value=2.7e-22 Score=147.63 Aligned_cols=133 Identities=18% Similarity=0.186 Sum_probs=95.6
Q ss_pred ECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECC----------ChhhhhchhhhhHHHHhh-hCCCCcEEEEe
Q psy14754 48 VDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKH-FCPNVPIILVG 116 (192)
Q Consensus 48 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~ 116 (192)
+..+.+.+++||++|++.++..|..++++++++|+|+|++ +.+++.+....|...+.. ..++.|+++++
T Consensus 156 ~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~ 235 (340)
T 4fid_A 156 FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFL 235 (340)
T ss_dssp EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEE
T ss_pred EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEE
Confidence 3445678999999999999999999999999999999998 556677665444444443 34689999999
Q ss_pred ecccccCCccchhhhhhccCC---CCCHHHHHHHH-HHc-------------------------CCceEEEeccCCcCCH
Q psy14754 117 NKKDLRNDPNTIKELNKMKQE---PVKPEEGRAMA-QKI-------------------------NAFAYLECSAKSKEGV 167 (192)
Q Consensus 117 nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~-------------------------~~~~~~~~Sa~~~~gi 167 (192)
||+|+.........+...-+. ....+++..+. +.+ ..+.++++||++..||
T Consensus 236 NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv 315 (340)
T 4fid_A 236 NKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI 315 (340)
T ss_dssp ECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred ECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence 999997533221111111111 12345554443 222 2367889999999999
Q ss_pred HHHHHHHHHHHhh
Q psy14754 168 REVFETATRAALQ 180 (192)
Q Consensus 168 ~~~~~~i~~~~~~ 180 (192)
+.+|+.+.+.++.
T Consensus 316 ~~vF~~v~~~Il~ 328 (340)
T 4fid_A 316 KRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999987
No 160
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=4.2e-22 Score=151.69 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=106.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCC---CCcccC--ceeeeee-EEEEE-------------C--C----eEEEEEEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQF---PEVYVP--TVFENYV-ADIEV-------------D--S----KQVELALW 58 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~-~~~~~-------------~--~----~~~~~~l~ 58 (192)
..++|+++|++++|||||+++|.+... .....+ +....+. ..... . + ....+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 468999999999999999999986432 222222 1111111 11100 0 1 13789999
Q ss_pred eCCCCCcccccccccCCCCCEEEEEEECCCh----hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhc
Q psy14754 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKM 134 (192)
Q Consensus 59 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 134 (192)
||||+++|.......+..+|++|+|+|++++ ++.+.+ ..+... ...|+++++||+|+........
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~~-~~~~iivviNK~Dl~~~~~~~~----- 157 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-----MALQII-GQKNIIIAQNKIELVDKEKALE----- 157 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-----HHHHHH-TCCCEEEEEECGGGSCHHHHHH-----
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-----HHHHHc-CCCcEEEEEECccCCCHHHHHH-----
Confidence 9999999887777777889999999999964 233222 222222 1358999999999976321100
Q ss_pred cCCCCCHHHHHHHHHH--cCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 135 KQEPVKPEEGRAMAQK--INAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 135 ~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
..++..++... ...++++++||++++|+++++++|.+.+....
T Consensus 158 -----~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 158 -----NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp -----HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred -----HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 11223333332 12368999999999999999999998776543
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=2.4e-21 Score=144.86 Aligned_cols=163 Identities=16% Similarity=0.117 Sum_probs=104.4
Q ss_pred cee-EEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCc---------cccccccc
Q psy14754 5 RKK-LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQED---------YDRLRPLS 73 (192)
Q Consensus 5 ~~~-i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~ 73 (192)
.++ |+++|++|+|||||+|+|.+..+.....+..+ +.....+.+++ ..+.+|||+|... |...+ ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 355 99999999999999999998875332222222 22344555655 4689999999622 22222 24
Q ss_pred CCCCCEEEEEEECCChh--hhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy14754 74 YPDTDVILMCFSIDSPD--SLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
+..+|++++|+|++++. ..... +.|...+.... .+.|+++|+||+|+.+.... ........+...
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~-----------~~~~~~~~l~~~ 322 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDLY-----------KKLDLVEKLSKE 322 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCHH-----------HHHHHHHHHHHH
T ss_pred HHhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchHH-----------HHHHHHHHHHHH
Confidence 67899999999998875 33333 34555555432 57899999999998653100 001122223344
Q ss_pred c--CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 151 I--NAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 151 ~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+ ...+++++||+++.|++++++.|.+.+....
T Consensus 323 l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 323 LYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp HCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred hcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 3 2247899999999999999999998876654
No 162
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=1.9e-22 Score=146.02 Aligned_cols=160 Identities=16% Similarity=0.114 Sum_probs=87.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc--------cCceeeee-eEEEEECCeEEEEEEEeCCCCCcccc------
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--------VPTVFENY-VADIEVDSKQVELALWDTAGQEDYDR------ 68 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~------ 68 (192)
..++|+++|.+|+|||||+|+|++....... .++.+... ...+..++..+.+.+|||||..++..
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4799999999999999999998876543332 22222111 22222233446899999999743211
Q ss_pred -cc--------------------cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy14754 69 -LR--------------------PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT 127 (192)
Q Consensus 69 -~~--------------------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 127 (192)
.. ...-..+|+++++++.+.. .+......++..+.. ++|+++|+||+|+......
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~ 162 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence 11 0111237799999977652 234443455555554 7999999999998652211
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754 128 IKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
. .......+.....+ ++++++|+++++|+++++++|.+.+
T Consensus 163 ~----------~~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 163 Q----------QFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp H----------HHHHHHHHHHHHTT-CCCCCC-----------CHHHHHTC
T ss_pred H----------HHHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCC
Confidence 0 00112233333444 5889999999999999999998765
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.86 E-value=3.4e-22 Score=149.77 Aligned_cols=150 Identities=11% Similarity=0.141 Sum_probs=103.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 86 (192)
+|+++|++++|||||+++|+ ....+ .......+...+..+.+|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giT-i~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTS-SDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEE-SSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEE-EEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 11111 111112344455679999999999997777777889999999999
Q ss_pred CChhhhhchhhhhHHHHhhhCCCCcE-EEEee-cccccCCccchhhhhhccCCCCCHHHHHHHHHHc--CCceEEE--ec
Q psy14754 87 DSPDSLENIPEKWTPEVKHFCPNVPI-ILVGN-KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI--NAFAYLE--CS 160 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~S 160 (192)
++. ..... ..++..+... +.|. ++++| |+|+ .. ..... ..++..++...+ ..+|+++ +|
T Consensus 93 ~~g-~~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~-~~~~~---------~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 93 PQG-LDAHT-GECIIALDLL--GFKHGIIALTRSDST-HM-HAIDE---------LKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp TTC-CCHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CH-HHHHH---------HHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred CCC-CcHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CH-HHHHH---------HHHHHHHHHHhcCCCceEEEecccc
Confidence 543 22222 3455555444 6787 99999 9998 42 11000 012333333333 2369999 99
Q ss_pred cCC---cCCHHHHHHHHHHHHhhh
Q psy14754 161 AKS---KEGVREVFETATRAALQV 181 (192)
Q Consensus 161 a~~---~~gi~~~~~~i~~~~~~~ 181 (192)
|++ ++|++++++.|.+.+...
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhcccc
Confidence 999 999999999998887543
No 164
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.7e-22 Score=138.94 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=84.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCc---ccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCC---
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPD--- 76 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~--- 76 (192)
...++|+++|++|+|||||+++|.+..+... ..++. ..+.....+.+|||||+..+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS--------AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce--------eeeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 3578999999999999999999999876442 11111 112245678999999999988877777665
Q ss_pred -CCEEEEEEECC-ChhhhhchhhhhHHHHhh----hCCCCcEEEEeecccccCC
Q psy14754 77 -TDVILMCFSID-SPDSLENIPEKWTPEVKH----FCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 77 -~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~ 124 (192)
+|++++|+|++ +.+++......+...+.. ..++.|+++|+||+|+...
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 888888875433343332 2248999999999999764
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=2.6e-21 Score=148.29 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=100.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCC---CCc---------ccCcee--------------------eeeeEEEEECCe
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQF---PEV---------YVPTVF--------------------ENYVADIEVDSK 51 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~---------~~~~~~--------------------~~~~~~~~~~~~ 51 (192)
..+||+++|++++|||||+++|++... ... ...++. +.......+...
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 358999999999999999999987541 110 001100 000011123334
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCC-cEEEEeecccccCCccchhh
Q psy14754 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV-PIILVGNKKDLRNDPNTIKE 130 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~~~~~ 130 (192)
...+.+|||||+++|...+...+..+|++|+|+|++++...+. ..++..+... +. |+++|+||+|+...... .
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~--~ 176 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL--GIKHIVVAINKMDLNGFDER--V 176 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEEECTTTTTSCHH--H
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEEcCcCCcccHH--H
Confidence 5679999999999998888888899999999999998632221 2333333332 44 69999999999753210 0
Q ss_pred hhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHHH
Q psy14754 131 LNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVREV 170 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~ 170 (192)
.. ....+...+.+.++ ..+++++||++|.|++++
T Consensus 177 ~~------~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 FE------SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HH------HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HH------HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 00 01234445555554 268999999999999874
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=8.5e-22 Score=152.01 Aligned_cols=160 Identities=13% Similarity=0.109 Sum_probs=89.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC--CCCCc----------------------cc------CceeeeeeEEEEECCeEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKD--QFPEV----------------------YV------PTVFENYVADIEVDSKQV 53 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~----------------------~~------~~~~~~~~~~~~~~~~~~ 53 (192)
..++|+++|++++|||||+++|+.. .+... .. ....+.......+...+.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 4689999999999999999999752 22100 00 000000000011222346
Q ss_pred EEEEEeCCCCCcccccccccCCCCCEEEEEEECCCh---hhhhchhh--hhHHHHhhhCCCCc-EEEEeecccccCCccc
Q psy14754 54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP---DSLENIPE--KWTPEVKHFCPNVP-IILVGNKKDLRNDPNT 127 (192)
Q Consensus 54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~--~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~ 127 (192)
.+.+|||||+++|...+...+..+|++|+|+|++++ .+|+...+ ..+..... .+.| ++|++||+|+......
T Consensus 122 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTCSSC
T ss_pred EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCCcccc
Confidence 799999999999999888889999999999999986 34442211 12222222 2677 9999999999653211
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHc-C-----CceEEEeccCCcCCHHHHH
Q psy14754 128 IKELNKMKQEPVKPEEGRAMAQKI-N-----AFAYLECSAKSKEGVREVF 171 (192)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~Sa~~~~gi~~~~ 171 (192)
.+.+. ....+...+...+ + .++++++||++|.|+++++
T Consensus 200 ~~~~~------~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYK------ECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHH------HHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHH------HHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11110 0112344444443 2 3689999999999998754
No 167
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=9.7e-23 Score=152.49 Aligned_cols=162 Identities=17% Similarity=0.155 Sum_probs=83.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCC-Cccc--------Cceeeee-eEEEEECCeEEEEEEEeCCCC-------Ccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYV--------PTVFENY-VADIEVDSKQVELALWDTAGQ-------EDY 66 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~--------~~~~~~~-~~~~~~~~~~~~~~l~D~~g~-------~~~ 66 (192)
..++|+|+|++|+|||||+++|++.... ..+. ++..... ...+...+....+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999998765432 2221 1221111 112223445678999999998 555
Q ss_pred ccccc-------ccC-----------CCC--CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754 67 DRLRP-------LSY-----------PDT--DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126 (192)
Q Consensus 67 ~~~~~-------~~~-----------~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 126 (192)
...+. .++ ... ++++++++.+ ..++..+...|+..+. .+.|+|+|+||+|+.....
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH
Confidence 55543 222 222 3445544432 3456665444555443 4799999999999875321
Q ss_pred chhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.. .....+..++..++ ++++++||+++.| ++.|..+.+.+.+.
T Consensus 192 v~----------~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 192 RE----------RLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HH----------HHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHT
T ss_pred HH----------HHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 00 00134445555555 5999999999998 88888877777654
No 168
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=2.6e-21 Score=148.29 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=101.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC--CCCCccc----------------------------CceeeeeeEEEEECCeEE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKD--QFPEVYV----------------------------PTVFENYVADIEVDSKQV 53 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 53 (192)
..++|+++|++++|||||+++|+.. .+..... ....+.......++....
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 4689999999999999999999874 3321100 000111111112334456
Q ss_pred EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchh------hhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy14754 54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP------EKWTPEVKHFCPNVPIILVGNKKDLRNDPNT 127 (192)
Q Consensus 54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 127 (192)
.+.+|||||+++|...+...++.+|++|+|+|+++ .+++... ..+....... ...|+++++||+|+.+....
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSSTTC
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccCCCcccc
Confidence 79999999999999888889999999999999998 5555332 1122222222 12469999999999763211
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHHH
Q psy14754 128 IKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVREV 170 (192)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~ 170 (192)
...+. ...++...+...++ .++++++||++|+|+.++
T Consensus 163 ~~~~~------~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 163 EKRYK------EIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHHH------HHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHHH------HHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 11000 11234555655554 268999999999999754
No 169
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.85 E-value=2.8e-21 Score=159.29 Aligned_cols=165 Identities=16% Similarity=0.110 Sum_probs=110.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC-------CCCc--cc-----Ccee-eeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQ-------FPEV--YV-----PTVF-ENYVADIEVDSKQVELALWDTAGQEDYDR 68 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~--~~-----~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 68 (192)
..++|+++|++++|||||+++|.+.. +... .. ...+ +.......++.....+.+|||||+++|..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~ 374 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK 374 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence 46899999999999999999998731 0000 00 0011 11111223444556899999999999988
Q ss_pred cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy14754 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM 147 (192)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (192)
.....+..+|++|+|+|++++...+. ..++..+... ++| +||++||+|+..+....+ ....+...+
T Consensus 375 ~mi~gas~AD~aILVVDAtdGv~~QT--rEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le---------~i~eEi~el 441 (1289)
T 3avx_A 375 NMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQV--GVPYIIVFLNKCDMVDDEELLE---------LVEMEVREL 441 (1289)
T ss_dssp HHHHTSCCCSEEEEEEETTTCSCTTH--HHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHH---------HHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEcCCccCcHHH--HHHHHHHHHc--CCCeEEEEEeecccccchhhHH---------HHHHHHHHH
Confidence 88888899999999999998643222 2344444443 788 799999999975211100 012344455
Q ss_pred HHHcC----CceEEEeccCCc--------CCHHHHHHHHHHHHhhh
Q psy14754 148 AQKIN----AFAYLECSAKSK--------EGVREVFETATRAALQV 181 (192)
Q Consensus 148 ~~~~~----~~~~~~~Sa~~~--------~gi~~~~~~i~~~~~~~ 181 (192)
...++ .++++++||++| .|++++++.|...+..+
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 55554 368999999999 57999999998876543
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.85 E-value=8.1e-22 Score=151.77 Aligned_cols=156 Identities=12% Similarity=0.127 Sum_probs=100.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC--CCCCcc-----------------------------cCceeeeeeEEEEECCeE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKD--QFPEVY-----------------------------VPTVFENYVADIEVDSKQ 52 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 52 (192)
..++|+++|++++|||||+++|++. .+.... ....+ .......+....
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiT-i~~~~~~~~~~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGIT-IDIALWKFETPK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCC-CSCSCEEEECSS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcE-EEEEEEEEecCC
Confidence 5799999999999999999999864 221100 01111 111111234445
Q ss_pred EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh---hhhch--hhhhHHHHhhhCCCCc-EEEEeecccccCCcc
Q psy14754 53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLENI--PEKWTPEVKHFCPNVP-IILVGNKKDLRNDPN 126 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~--~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~ 126 (192)
..+.+|||||+++|...+...+..+|++|+|+|++++. +|+.. ...++...... +.| +++++||+|+.....
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~--~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL--GVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT--TCCEEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc--CCCeEEEEEEccccccCCH
Confidence 68999999999999888888899999999999999762 33211 11222223322 565 999999999974211
Q ss_pred chhhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHHH
Q psy14754 127 TIKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVREV 170 (192)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~ 170 (192)
. .+. ....+...+...++ .++++++||++|.|+.++
T Consensus 163 ~--~~~------~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 163 S--RFQ------EIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp H--HHH------HHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred H--HHH------HHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 0 000 01233445555544 268999999999998743
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.3e-21 Score=155.00 Aligned_cols=157 Identities=14% Similarity=0.170 Sum_probs=99.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCccc-------------------------------CceeeeeeEEEEECCeE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV-------------------------------PTVFENYVADIEVDSKQ 52 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 52 (192)
..+||+++|++++|||||+++|++........ +.. +.......+...+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~Gi-Tid~~~~~~~~~~ 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV-TVSICTSHFSTHR 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTT-CCSCSCCEEECSS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCe-eEeeeeEEEecCC
Confidence 47899999999999999999998764322110 111 1111111233345
Q ss_pred EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh---hhh--chhhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy14754 53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLE--NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT 127 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 127 (192)
..+.+|||||++.|...+...++.+|++|+|+|++++. ++. .........+... ...|++||+||+|+......
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-gi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-TCCEEEEEEECTTTTTTCHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-CCCeEEEEEecccccchhHH
Confidence 68999999999999998888999999999999998752 111 1111122222221 12459999999998752210
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHHH
Q psy14754 128 IKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVREV 170 (192)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~ 170 (192)
... ....+...+...++ .++++++||++|.|++++
T Consensus 324 --~~~------ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 --RFE------EIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp --HHH------HHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred --HHH------HHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 000 00122333333333 358999999999999865
No 172
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.84 E-value=2.6e-22 Score=158.53 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=89.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC--c-----------------------------ccCceeeeeeEEEEECCeE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE--V-----------------------------YVPTVFENYVADIEVDSKQ 52 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 52 (192)
..++|+++|++++|||||+++|+...... . ..+. .+.......+...+
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~G-iTid~~~~~~~~~~ 254 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARG-VTMDVASTTFESDK 254 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCC-eeEEeeEEEEEeCC
Confidence 46799999999999999999996521000 0 0001 11111112234455
Q ss_pred EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh---hh--hchhhhhHHHHhhhCCCCc-EEEEeecccccCCcc
Q psy14754 53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SL--ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPN 126 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~ 126 (192)
..+.+|||||+.+|.......+..+|++|+|+|++++. .+ ......++..+... +.| +|+|+||+|+.....
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTCH
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccccH
Confidence 78999999999999999888999999999999998753 22 22212223333332 566 999999999875221
Q ss_pred chhhhhhccCCCCCHHHHHHHH-HHcC----CceEEEeccCCcCCHH--------------HHHHHHHHHHh
Q psy14754 127 TIKELNKMKQEPVKPEEGRAMA-QKIN----AFAYLECSAKSKEGVR--------------EVFETATRAAL 179 (192)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~Sa~~~~gi~--------------~~~~~i~~~~~ 179 (192)
.. .. ....+...+. ..++ .++++++||++|.|+. .|++.|...+.
T Consensus 333 ~~--~~------~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 333 DR--FQ------EIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp HH--HH------HHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred HH--HH------HHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 00 00 0012222333 2222 2489999999999998 67777766443
No 173
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.84 E-value=4.3e-21 Score=144.23 Aligned_cols=131 Identities=17% Similarity=0.211 Sum_probs=93.5
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCC----------hhhhhchhhhhHHHHhh--hCCCCcEEEEeecc
Q psy14754 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH--FCPNVPIILVGNKK 119 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~ 119 (192)
++.+++|||+|++.++..|..++++++++|+|||+++ .+++.... .|+..+.. ..++.|++||+||+
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~-~~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHH-HHHHHHHTCTTCSSCCEEEEEECH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHH-HHHHHHHhcccCCCCeEEEEEECh
Confidence 3689999999999999999999999999999999999 77788775 55555543 35789999999999
Q ss_pred cccCCccc--hhhhhhccCCC-------------C---CHHHHHHHH-----HHc-------CCceEEEeccCCcCCHHH
Q psy14754 120 DLRNDPNT--IKELNKMKQEP-------------V---KPEEGRAMA-----QKI-------NAFAYLECSAKSKEGVRE 169 (192)
Q Consensus 120 D~~~~~~~--~~~~~~~~~~~-------------~---~~~~~~~~~-----~~~-------~~~~~~~~Sa~~~~gi~~ 169 (192)
|+...... ...+....+.. - ..+++..|+ +.. ..+.+++|||+++.||++
T Consensus 295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~ 374 (402)
T 1azs_C 295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 374 (402)
T ss_dssp HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence 98643210 00010000000 0 134455543 221 235678999999999999
Q ss_pred HHHHHHHHHhhhcc
Q psy14754 170 VFETATRAALQVKK 183 (192)
Q Consensus 170 ~~~~i~~~~~~~~~ 183 (192)
+|.++.+.+.....
T Consensus 375 vF~~v~~~I~~~~l 388 (402)
T 1azs_C 375 VFNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888876543
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.84 E-value=1.7e-21 Score=142.64 Aligned_cols=160 Identities=17% Similarity=0.176 Sum_probs=97.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCc------ccCce---------------------eeee--------------
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV------YVPTV---------------------FENY-------------- 42 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~---------------------~~~~-------------- 42 (192)
..++|+|+|.+|+|||||+|+|++..+... ..|+. ++..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999876421 11210 0000
Q ss_pred ---------eEEEEE-CCeEEEEEEEeCCCCCc-------------ccccccccCCCCCEEE-EEEECCChhhhhchhhh
Q psy14754 43 ---------VADIEV-DSKQVELALWDTAGQED-------------YDRLRPLSYPDTDVIL-MCFSIDSPDSLENIPEK 98 (192)
Q Consensus 43 ---------~~~~~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~~ 98 (192)
...+.+ ......+.+|||||... +...+..+++.++.++ +|+|+++..+.... ..
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence 000000 00125799999999642 2334445667777666 79999875333322 13
Q ss_pred hHHHHhhhCCCCcEEEEeecccccCCccc-hhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754 99 WTPEVKHFCPNVPIILVGNKKDLRNDPNT-IKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 99 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
+...+.. .+.|+++|+||+|+...... ...+. ... .....+..+++++||+++.|++++++++.+.
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~---~~~--------~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLE---NKL--------LPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHT---TCS--------SCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHh---CCc--------CcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 4444443 37899999999999764321 11110 000 0000122478899999999999999998764
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.83 E-value=2.4e-20 Score=145.50 Aligned_cols=119 Identities=17% Similarity=0.103 Sum_probs=80.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCccc----------Cc-----------eeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV----------PT-----------VFENYVADIEVDSKQVELALWDTAG 62 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----------~~-----------~~~~~~~~~~~~~~~~~~~l~D~~g 62 (192)
...+|+++|++|+|||||+++|+......... .+ ..+.......+...+..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 46899999999999999999998632111000 00 0011111122333457899999999
Q ss_pred CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126 (192)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 126 (192)
+.+|...+...++.+|++|+|+|++++... ....++..+... +.|+++++||+|+.....
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~--~t~~~~~~~~~~--~ipiivviNK~Dl~~~~~ 151 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVED--RTRKLMEVTRLR--DTPILTFMNKLDRDIRDP 151 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCH--HHHHHHHHHTTT--TCCEEEEEECTTSCCSCH
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchH--HHHHHHHHHHHc--CCCEEEEEcCcCCccccH
Confidence 999988888889999999999999886322 112334444333 799999999999976543
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=1.2e-20 Score=135.69 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=81.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCC--------
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYP-------- 75 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-------- 75 (192)
.+++|+++|++|+|||||+++|++...........++.......+...+..+.+|||||+.++.......++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~ 114 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN 114 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhc
Confidence 579999999999999999999999875332222222222222222333458999999999877654433332
Q ss_pred -CCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEeecccccC
Q psy14754 76 -DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRN 123 (192)
Q Consensus 76 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~ 123 (192)
.+|++++|++++... +......|+..+...+. ..|+++|+||+|+..
T Consensus 115 ~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 115 RTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp CEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred CCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 689999999987654 55544467766665432 249999999999864
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=3.4e-20 Score=129.04 Aligned_cols=160 Identities=14% Similarity=0.069 Sum_probs=95.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcc----------cccccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDY----------DRLRPL 72 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~ 72 (192)
...+|+++|++|||||||++++.+..+.....++.+... ...+.+.+ .+.+||+||.... ......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 457899999999999999999998764333233333222 12222222 5789999997431 111112
Q ss_pred cC---CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754 73 SY---PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ 149 (192)
Q Consensus 73 ~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (192)
++ +.++++++++|++++.+... ..+...+... +.|+++++||+|+...... ......+..+..
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~~--~~~~~~v~nK~D~~s~~~~----------~~~~~~~~~~~~ 167 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVDS--NIAVLVLLTKADKLASGAR----------KAQLNMVREAVL 167 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCHHHH----------HHHHHHHHHHHG
T ss_pred HHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEecccCCCchhH----------HHHHHHHHHHHH
Confidence 22 56899999999987643321 1222333332 7899999999998652210 001123334444
Q ss_pred HcC-CceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 150 KIN-AFAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 150 ~~~-~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
..+ .+.++++||+++.|++++++.|.+.+.+
T Consensus 168 ~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 168 AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred hcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 443 3578899999999999999999887654
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.81 E-value=8.4e-20 Score=146.66 Aligned_cols=118 Identities=18% Similarity=0.108 Sum_probs=81.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC--CCC------Ccc---c------CceeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKD--QFP------EVY---V------PTVFENYVADIEVDSKQVELALWDTAGQEDY 66 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~------~~~---~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 66 (192)
...+|+|+|++|+|||||+++|+.. .+. ... . ....+.......+......+.+|||||+.+|
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 4689999999999999999999842 110 000 0 0000111111122223568999999999999
Q ss_pred cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
...+...++.+|++|+|+|+++..+.+.. ..|.. +... +.|+++++||+|+....
T Consensus 91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~~--~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 91 TIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEKY--KVPRIAFANKMDKTGAD 145 (691)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHHc--CCCEEEEEECCCcccCC
Confidence 88888889999999999999987665554 24443 3333 79999999999997653
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.81 E-value=1.1e-19 Score=145.50 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=80.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccC-----------------ceeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-----------------TVFENYVADIEVDSKQVELALWDTAGQEDY 66 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 66 (192)
...+|+++|+.|+|||||+++|++......... ...+.......+....+.+.+|||||+.+|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 346899999999999999999985332210000 001111222233334578999999999999
Q ss_pred cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122 (192)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 122 (192)
...+...++.+|++++|+|+++....+. ..++..+... +.|+++++||+|+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt--~~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGT--ERAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhH--HHHHHHHHHc--cCCEEEEecCCchh
Confidence 8888888899999999999887533222 3444555443 79999999999997
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.81 E-value=1.6e-19 Score=145.07 Aligned_cols=175 Identities=14% Similarity=0.127 Sum_probs=105.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCc-ccCceeee--------eeEEEEE--------------------------
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFEN--------YVADIEV-------------------------- 48 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~--------~~~~~~~-------------------------- 48 (192)
..++|+|+|.+|+|||||+|+|++...... ..+++... ......+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 478999999999999999999998775432 22222100 0001111
Q ss_pred --------------------CCeE--EEEEEEeCCCCCc---ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHH
Q psy14754 49 --------------------DSKQ--VELALWDTAGQED---YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV 103 (192)
Q Consensus 49 --------------------~~~~--~~~~l~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 103 (192)
+... ..+.+|||||... ....+..+++.+|++|+|+|++++.+.... +.|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0000 2589999999544 233445677889999999999887555544 2454444
Q ss_pred hhhCCCCcEEEEeecccccCCccch----hhhhhccCCCCCHHHHHHHHHHc-------CCceEEEeccC----------
Q psy14754 104 KHFCPNVPIILVGNKKDLRNDPNTI----KELNKMKQEPVKPEEGRAMAQKI-------NAFAYLECSAK---------- 162 (192)
Q Consensus 104 ~~~~~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~---------- 162 (192)
... +.|+++|+||+|+....... ..+..... .+.......+.... ...+++++||+
T Consensus 227 ~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~-~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASEN-RLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHH-HHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hhh--CCCEEEEEECcccccccccChhhHHHHHHHHH-HHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 433 67999999999986532000 00000000 00000001111111 12378999999
Q ss_pred ----CcCCHHHHHHHHHHHHhhhc
Q psy14754 163 ----SKEGVREVFETATRAALQVK 182 (192)
Q Consensus 163 ----~~~gi~~~~~~i~~~~~~~~ 182 (192)
++.|++++++.+.+.+...+
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred hhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999988776543
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.81 E-value=9.1e-20 Score=131.65 Aligned_cols=120 Identities=12% Similarity=0.117 Sum_probs=81.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccc---------cC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPL---------SY 74 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~---------~~ 74 (192)
.+++|+++|.+|+|||||+|+|++..+........++.......+...+..+.+|||||+.++...... ..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 478999999999999999999998876432222222222222233334568999999998776533221 23
Q ss_pred CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCC-C--CcEEEEeecccccCC
Q psy14754 75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRND 124 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~--~p~ivv~nK~D~~~~ 124 (192)
+.+|++++|+|++.. ++......|+..+...+. + .|+++|+||+|+.+.
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 468999999998653 355444467776655432 2 699999999998653
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.80 E-value=2.9e-20 Score=137.02 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=68.1
Q ss_pred EEEEEEeCCCCCc-------------ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecc
Q psy14754 53 VELALWDTAGQED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119 (192)
Q Consensus 53 ~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 119 (192)
..+.+|||||... +...+..+++.+|++++|+|.++..........+...+.. .+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 4689999999753 2333445677899999999985432111111134444443 278999999999
Q ss_pred cccCCccchhhhhhccCCCCCHHHHHHHHHH--cCCceEEEeccCC---cCCHHHHHHHHHHHHhhh
Q psy14754 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQK--INAFAYLECSAKS---KEGVREVFETATRAALQV 181 (192)
Q Consensus 120 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~---~~gi~~~~~~i~~~~~~~ 181 (192)
|+...... ........... .+.+++..+|+.+ +.|++++++.+.+.+...
T Consensus 209 Dl~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 209 DLMDKGTD------------AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp TSSCSSCC------------CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred ccCCcchH------------HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 99764321 01111100001 1113444556666 789999999988777553
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.79 E-value=1e-18 Score=140.63 Aligned_cols=118 Identities=15% Similarity=0.079 Sum_probs=80.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC--CCCcc-----------c----Cceeeee--eEEEEEC-----CeEEEEEEEe
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQ--FPEVY-----------V----PTVFENY--VADIEVD-----SKQVELALWD 59 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~-----------~----~~~~~~~--~~~~~~~-----~~~~~~~l~D 59 (192)
...+|+|+|+.++|||||+++|+... +.... . ....+.. ...+.+. +..+.+.+||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 46799999999999999999997531 11100 0 0000111 1112222 2337899999
Q ss_pred CCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
|||+.+|...+...++.+|++|+|+|+++....+.. ..| ...... +.|+++++||+|+....
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~~--~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVW-RQANKY--KVPRIAFVNKMDRMGAN 150 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHH-HHHHHc--CCCEEEEEeCCCccccc
Confidence 999999988888899999999999999987544333 233 333333 79999999999997643
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.79 E-value=5.7e-19 Score=141.91 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=81.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh--CCCCCcc---c------------CceeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK--DQFPEVY---V------------PTVFENYVADIEVDSKQVELALWDTAGQEDY 66 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~--~~~~~~~---~------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 66 (192)
...+|+++|++|+|||||+++|+. +.+.... . ....+.......+...+..+.+|||||+.+|
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 467999999999999999999985 2221000 0 0000111111112223468999999999999
Q ss_pred cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
...+...++.+|++|+|+|++++.+.+.. ..|. .+... +.|+++|+||+|+....
T Consensus 89 ~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~~--~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 89 TVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATTY--GVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEECCCccccc
Confidence 88888888999999999999987555444 2343 34443 79999999999997653
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.79 E-value=7.9e-20 Score=137.04 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=94.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee--------------e----------------------------
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY--------------V---------------------------- 43 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--------------~---------------------------- 43 (192)
.+|+|+|++|||||||+|+|.+..+........+... .
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 4899999999999999999999776332221111000 0
Q ss_pred -----------EEEE-ECCeEEEEEEEeCCCCCcc-------------cccccccCCCCCEEEEEEECCChhhhhchhhh
Q psy14754 44 -----------ADIE-VDSKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 98 (192)
Q Consensus 44 -----------~~~~-~~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 98 (192)
..+. .......+.+|||||...+ ......+++.+|++|+++|..+..... ..
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~~ 191 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---SD 191 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---CH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---HH
Confidence 0000 0011235899999997765 334455678999999999876543222 24
Q ss_pred hHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHH
Q psy14754 99 WTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETA 174 (192)
Q Consensus 99 ~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 174 (192)
|...+.... .+.|+++|+||+|+...... .......+...++ .+|+++|+..+.++++.+...
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~------------~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTD------------AVEILEGRSFKLK-YPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCC------------SHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCccc------------HHHHHcCcccccc-CCeEEEEECChHHhccCCCHH
Confidence 444444433 27899999999999764221 1111111222233 578888888888877665543
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=7.7e-19 Score=132.99 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=102.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccc----ccccc---cCCCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYD----RLRPL---SYPDTD 78 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~----~~~~~---~~~~~~ 78 (192)
.|+++|++|||||||++++.+........+.++... .-.+..+. ...+.+||+||..... ..... .++.++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 589999999999999999998753211111111111 11222222 2568999999974321 12111 235689
Q ss_pred EEEEEEECCChhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy14754 79 VILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA 155 (192)
Q Consensus 79 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (192)
.+++++|++ ...+..+. .+...+..+. ...|.++++||+|+... . ............+ .+
T Consensus 238 ~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-------------~~~~l~~~l~~~g-~~ 300 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-------------AVKALADALAREG-LA 300 (416)
T ss_dssp EEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-------------HHHHHHHHHHTTT-SC
T ss_pred hhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-------------HHHHHHHHHHhcC-Ce
Confidence 999999997 44455553 4444444332 26899999999998652 1 1122223333333 58
Q ss_pred EEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 156 YLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
++.+||++++|+++++++|.+.+...+.
T Consensus 301 vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 301 VLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred EEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999876543
No 187
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.78 E-value=1.2e-18 Score=136.43 Aligned_cols=119 Identities=15% Similarity=0.101 Sum_probs=83.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCC------------------Cc---ccCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFP------------------EV---YVPTVFENYVADIEVDSKQVELALWDTAG 62 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 62 (192)
+..+|+|+|+.++|||||..+|+...-. +. ....+.+.....+.+.+++..+.|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4678999999999999999998632110 00 00001111112233444567899999999
Q ss_pred CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126 (192)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 126 (192)
|.+|.......++.+|++|+|+|+.++-..+. +..+....++ ++|.++++||+|....+.
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT--~~v~~~a~~~--~lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT--RKLMDVCRMR--ATPVMTFVNKMDREALHP 169 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH--HHHHHHHHHT--TCCEEEEEECTTSCCCCH
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCccccc--HHHHHHHHHh--CCceEEEEecccchhcch
Confidence 99999999999999999999999998733333 3444555555 899999999999976554
No 188
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=9.5e-20 Score=133.22 Aligned_cols=161 Identities=17% Similarity=0.164 Sum_probs=84.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC-CCCCccc--------CceeeeeeEEEEE--CCeEEEEEEEeCCCC-------Cc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKD-QFPEVYV--------PTVFENYVADIEV--DSKQVELALWDTAGQ-------ED 65 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~l~D~~g~-------~~ 65 (192)
..++|+++|++|+|||||+++|.+. .++.... ++.. .....+.+ .+....+++||++|. +.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~-~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQ-IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcce-EeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 5689999999999999999998875 4433221 1111 11111222 233467999999997 44
Q ss_pred cccccc-------ccCC-------------CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754 66 YDRLRP-------LSYP-------------DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 66 ~~~~~~-------~~~~-------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
+..... .+++ .+++++++.+.+. .+++.... ..++...++.|+++|+||.|+....
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHH
Confidence 433322 1111 2334555544332 23444432 3334334468999999999986521
Q ss_pred cchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy14754 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+ .....+++.++++.++ ++++++||+++ |++++|..+.+.+...
T Consensus 172 e----------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 172 E----------RERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp H----------HHHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTT
T ss_pred H----------HHHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 1 0112345667777777 59999999999 9999999999888654
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=1.4e-18 Score=131.21 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=47.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEE----------------------EECC-eEEEEEEEeCCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----------------------EVDS-KQVELALWDTAG 62 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~----------------------~~~~-~~~~~~l~D~~g 62 (192)
++|+++|.+|+|||||+|+|++........+.++......+ .++. ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987732222222221111110 0122 257899999999
Q ss_pred CCcc----cccc---cccCCCCCEEEEEEECCCh
Q psy14754 63 QEDY----DRLR---PLSYPDTDVILMCFSIDSP 89 (192)
Q Consensus 63 ~~~~----~~~~---~~~~~~~~~~i~v~d~~~~ 89 (192)
.... .... ...++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7532 2222 2457899999999999874
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=130.85 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=80.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccC-------ceeeeeeEEEEE--CCeEEEEEEEeCCCCCcccc------
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-------TVFENYVADIEV--DSKQVELALWDTAGQEDYDR------ 68 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~------ 68 (192)
..++|+|+|++|+|||||++.|++..+...... .+.......+.+ .+....+++||++|...+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 467899999999999999999998776322110 000000111111 22234789999999754311
Q ss_pred -------------------cccccCCCCCEEEEEEECCCh-hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy14754 69 -------------------LRPLSYPDTDVILMCFSIDSP-DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI 128 (192)
Q Consensus 69 -------------------~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 128 (192)
.....+.++++.+++|..... .++......|+..+. .+.|+|+|+||+|+.....
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e-- 184 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE-- 184 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH--
Confidence 123445565654555544432 345555445666654 3799999999999865211
Q ss_pred hhhhhccCCCCC--HHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754 129 KELNKMKQEPVK--PEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 129 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
+. ...+.+++...+ ++++++|++++.++++++..+...+
T Consensus 185 ----------v~~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 185 ----------CQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp ----------HHHHHHHHHHHHHHHT-CCCCCCC-----------------C
T ss_pred ----------HHHHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 11 144555666666 5899999999999999888776643
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.74 E-value=2e-18 Score=129.03 Aligned_cols=105 Identities=20% Similarity=0.205 Sum_probs=70.2
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL 131 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 131 (192)
+..+.+|||||... .....+..+|++++|+|....+..+.+... ..+.|+++|+||+|+......
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~---- 235 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEA---- 235 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHH----
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHH----
Confidence 46789999999432 222345789999999998776555444211 114699999999998642111
Q ss_pred hhccCCCCCHHHHHHHHHH---cC------CceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 132 NKMKQEPVKPEEGRAMAQK---IN------AFAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
.....++... .+ ..+++++||++|+|+++++++|.+.+..
T Consensus 236 ---------~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 236 ---------RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp ---------HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 0111122221 11 2589999999999999999999988755
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.73 E-value=2.4e-18 Score=128.61 Aligned_cols=158 Identities=19% Similarity=0.231 Sum_probs=90.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcc------cCcee---------------------eee---------------
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY------VPTVF---------------------ENY--------------- 42 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~---------------------~~~--------------- 42 (192)
..+|+|+|.+|+|||||+|+|++..+.... .|+.. +..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 569999999999999999999998764211 12200 000
Q ss_pred --------eEEEEE-CCeEEEEEEEeCCCCCc-------------ccccccccCCCCC-EEEEEEECCChhhhhchhh-h
Q psy14754 43 --------VADIEV-DSKQVELALWDTAGQED-------------YDRLRPLSYPDTD-VILMCFSIDSPDSLENIPE-K 98 (192)
Q Consensus 43 --------~~~~~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~-~ 98 (192)
...+.+ ......+.+|||||... +......+++..+ +++++++++.. +..... .
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~~~~~ 188 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANSDALK 188 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGCHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchhHHHH
Confidence 000000 01135699999999532 2223334554555 55556665542 332211 2
Q ss_pred hHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHH
Q psy14754 99 WTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176 (192)
Q Consensus 99 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 176 (192)
+...+.. .+.|+++|+||+|+........... .... +....+..+++++||+++.|++++++++.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~--~~~~--------~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGTDARDVL--ENKL--------LPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHH--TTCS--------SCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcchhHHHHH--hCCc--------ccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333332 3799999999999976432111000 0000 000112246789999999999999999876
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.73 E-value=4.8e-18 Score=119.06 Aligned_cols=157 Identities=19% Similarity=0.123 Sum_probs=92.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-------------eeEEEEEC------------------CeE
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-------------YVADIEVD------------------SKQ 52 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~------------------~~~ 52 (192)
...+|+++|.+|+|||||+++|................ .......+ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34689999999999999999998752211000000000 00001111 123
Q ss_pred EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhh
Q psy14754 53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELN 132 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 132 (192)
..+.+|||+|+..... .+....+.+++|+|+++... .. ..+... . +.|.++|+||+|+...
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~-~~~~~~---~--~~~~iiv~NK~Dl~~~-------- 169 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VV-EKHPEI---F--RVADLIVINKVALAEA-------- 169 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HH-HHCHHH---H--HTCSEEEEECGGGHHH--------
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hh-hhhhhh---h--hcCCEEEEecccCCcc--------
Confidence 5678999998511111 11125688999999876531 11 111121 1 5799999999998642
Q ss_pred hccCCCCCHHHHHHHHHHcC-CceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy14754 133 KMKQEPVKPEEGRAMAQKIN-AFAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
......+........+ ..+++++||++|.|+++++++|.+.+.....
T Consensus 170 ----~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 217 (221)
T 2wsm_A 170 ----VGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHSD 217 (221)
T ss_dssp ----HTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC----
T ss_pred ----hhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHh
Confidence 1122334444444332 3689999999999999999999998866543
No 194
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=1.3e-18 Score=127.32 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=103.7
Q ss_pred HHHHHHhhCCCC-CcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh-hhhchhh
Q psy14754 20 CLLIVFSKDQFP-EVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD-SLENIPE 97 (192)
Q Consensus 20 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~ 97 (192)
+|+.++..+.+. ..+.|+.+..+... ..... .+.+||+ +++|..++..+++++|++|+|||++++. ++..+ +
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 677888888887 77778877655433 22222 7899999 8999999999999999999999999987 56555 5
Q ss_pred hhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC-ceEEEeccCCcCCHHHHHHHHHH
Q psy14754 98 KWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA-FAYLECSAKSKEGVREVFETATR 176 (192)
Q Consensus 98 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~i~~ 176 (192)
.|+..+.. .+.|+++|+||+|+.+... + ++..++++.+.. .+++++||+++.|++++|..+..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~------------v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDD------------L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHH------------H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchh------------H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 78877665 3899999999999965211 1 234455555542 58999999999999999988764
Q ss_pred H
Q psy14754 177 A 177 (192)
Q Consensus 177 ~ 177 (192)
.
T Consensus 170 e 170 (301)
T 1u0l_A 170 K 170 (301)
T ss_dssp S
T ss_pred C
Confidence 3
No 195
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.72 E-value=3e-18 Score=136.69 Aligned_cols=174 Identities=16% Similarity=0.127 Sum_probs=113.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhh--CCCCC------cc---c--C----ceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK--DQFPE------VY---V--P----TVFENYVADIEVDSKQVELALWDTAGQEDYDR 68 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~--~~~~~------~~---~--~----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 68 (192)
.||+|+|+.++|||||..+|+. +.... .. + + .+.+.....+.+..++..+.++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999874 11111 00 0 0 00111122234455667899999999999999
Q ss_pred cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchh--hh-hhccC---------
Q psy14754 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIK--EL-NKMKQ--------- 136 (192)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~-~~~~~--------- 136 (192)
.....++.+|++|+|+|+.++ .+...+..+...... +.|.++++||+|....+.... .+ ..+..
T Consensus 83 Ev~raL~~~DgavlVVDa~~G--V~~qT~~v~~~a~~~--~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDG--VQAQTRILFHALRKM--GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCT--TCSHHHHHHHHHHHH--TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCC--CcHHHHHHHHHHHHc--CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 999999999999999999986 333334445555555 899999999999876543211 00 00000
Q ss_pred ---------------------------------CCCCHHHHH----HHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754 137 ---------------------------------EPVKPEEGR----AMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 137 ---------------------------------~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
......+.. .-.......|++..||+++.|++.+++.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence 000000000 0011223468899999999999999999998877
Q ss_pred hhcc
Q psy14754 180 QVKK 183 (192)
Q Consensus 180 ~~~~ 183 (192)
.+..
T Consensus 239 ~p~~ 242 (638)
T 3j25_A 239 SSTH 242 (638)
T ss_dssp CSGG
T ss_pred Cccc
Confidence 6644
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.68 E-value=3.1e-16 Score=110.17 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=87.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee-------------EEEEEC-C-------------------
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-------------ADIEVD-S------------------- 50 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~-~------------------- 50 (192)
..++|+++|.+|+|||||+++|+...+...+.++....+. ..+.++ +
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999987554432222221111 111111 0
Q ss_pred eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhh
Q psy14754 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKE 130 (192)
Q Consensus 51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 130 (192)
....+.++|++|.-.... .+-...+..+.++|......... .....+ +.|.++|+||+|+...
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~------ 179 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGIM-----KTADLIVINKIDLADA------ 179 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHHH-----TTCSEEEEECGGGHHH------
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhHh-----hcCCEEEEeccccCch------
Confidence 011355556555211000 01112344556666433211111 111111 4788999999998642
Q ss_pred hhhccCCCCCHHHHHHHHHHc-CCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 131 LNKMKQEPVKPEEGRAMAQKI-NAFAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
+....++...+...+ ...+++++||++|.|++++|+++.+.+..
T Consensus 180 ------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 180 ------VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp ------HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 112344555555543 23689999999999999999999887754
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.67 E-value=3.3e-17 Score=122.09 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=61.8
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL 131 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 131 (192)
+..+.++||||.... .....+.+|++++|+|++++...+.+.. .+ -..|.++|+||+|+.+....
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~i----l~~~~ivVlNK~Dl~~~~~~---- 230 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----GI----IEMADLVAVTKSDGDLIVPA---- 230 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH----
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----HH----HhcCCEEEEeeecCCCchhH----
Confidence 356899999995321 1234568999999999987643332211 11 14688999999998642110
Q ss_pred hhccCCCCCHHHHHHHHHH---------cCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754 132 NKMKQEPVKPEEGRAMAQK---------INAFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
......+... ....+++.+||++++|+++++++|.+.+.
T Consensus 231 ---------~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 231 ---------RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp ---------HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0011111110 01247899999999999999999988753
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.67 E-value=5.1e-17 Score=133.05 Aligned_cols=115 Identities=14% Similarity=0.088 Sum_probs=82.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCc----------------ccC--ceeeeeeEEEEE--------------CCe
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV----------------YVP--TVFENYVADIEV--------------DSK 51 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~--~~~~~~~~~~~~--------------~~~ 51 (192)
...||+|+|++++|||||+++|+...-... ... +.... ...+.+ ++.
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~-~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKST-AISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCC-EEEEEEECCHHHHHHCSSCCCSS
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeec-eeEEEecccccccccccccccCC
Confidence 457999999999999999999986421000 000 11000 111112 234
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
...+.+|||||+.+|...+...++.+|++|+|+|++++.+.+.. ..|...... +.|+++++||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~~---~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALGE---RIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHHc---CCCeEEEEECCCcch
Confidence 78999999999999999999999999999999999998666654 345444432 799999999999863
No 199
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=1.6e-15 Score=112.72 Aligned_cols=84 Identities=19% Similarity=0.120 Sum_probs=54.6
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCe---------------EEEEEEEeCCCCCccc-
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSK---------------QVELALWDTAGQEDYD- 67 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------~~~~~l~D~~g~~~~~- 67 (192)
.++|+++|.+|+|||||+|+|.+........|..+.. ....+.+.+. ...+.+|||||...+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 4799999999999999999999977433222221111 1112223321 1579999999987653
Q ss_pred ---cccc---ccCCCCCEEEEEEECCC
Q psy14754 68 ---RLRP---LSYPDTDVILMCFSIDS 88 (192)
Q Consensus 68 ---~~~~---~~~~~~~~~i~v~d~~~ 88 (192)
.... ..++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2222 23678999999999986
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.65 E-value=2.3e-17 Score=122.68 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=65.6
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL 131 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 131 (192)
++.+.+|||||....... ..+.+|++++|+|++....++.+.. ... +.|.++|+||+|+.........
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~-----~~p~ivv~NK~Dl~~~~~~~~~- 215 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GLM-----EVADLIVINKDDGDNHTNVAIA- 215 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HHH-----HHCSEEEECCCCTTCHHHHHHH-
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hhh-----cccCEEEEECCCCCChHHHHHH-
Confidence 457999999996543322 3578999999999987654433211 111 4688999999998652110000
Q ss_pred hhccCCCCCHHHHHHHHHHcC------CceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754 132 NKMKQEPVKPEEGRAMAQKIN------AFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
..+.......++ ..+++++||++|.|++++++.|.+.+.
T Consensus 216 ---------~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 216 ---------RHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ---------HHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 001111111111 247899999999999999999988765
No 201
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=7.2e-17 Score=126.63 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=76.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCC---CcccCceeeeeeEEEEECCe-----------------------E-----
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFP---EVYVPTVFENYVADIEVDSK-----------------------Q----- 52 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~-----------------------~----- 52 (192)
..++|+|+|.+|+|||||+|+|++..+. ....+++. ... .+..... +
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~-~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD-CFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC-SEE-EEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc-eEE-EEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 4579999999999999999999998864 22222221 110 0000000 0
Q ss_pred ------------EEEEEEeCCCCCc-----------ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCC
Q psy14754 53 ------------VELALWDTAGQED-----------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN 109 (192)
Q Consensus 53 ------------~~~~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 109 (192)
..+.+|||||... |...+..++..+|++|+|+|+++....... ..|+..+... +
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--E 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--G
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--C
Confidence 2589999999764 223444556789999999999874322222 3455555443 6
Q ss_pred CcEEEEeecccccCC
Q psy14754 110 VPIILVGNKKDLRND 124 (192)
Q Consensus 110 ~p~ivv~nK~D~~~~ 124 (192)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 899999999999753
No 202
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.64 E-value=1.6e-15 Score=122.48 Aligned_cols=116 Identities=16% Similarity=0.076 Sum_probs=79.0
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC--------CCCCc--c--------cCceee-eeeEEEEEC-----CeEEEEEEEeCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD--------QFPEV--Y--------VPTVFE-NYVADIEVD-----SKQVELALWDTA 61 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~--------~~~~~--~--------~~~~~~-~~~~~~~~~-----~~~~~~~l~D~~ 61 (192)
.+|+|+|+.++|||||..+|+.. ..... + ...++- .....+.+. ...+.+.|+|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 58999999999999999998731 11110 0 000000 001122222 236789999999
Q ss_pred CCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy14754 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
||.+|.......++-+|++|+|+|+..+-..+. +..+....+. +.|.++++||+|.....
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT--~~v~~~a~~~--~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS--ETVWRQANKY--GVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHHH--TCCEEEEEECSSSTTCC
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEccccccCcc
Confidence 999999999999999999999999998633332 3444444444 89999999999986543
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.59 E-value=6.4e-15 Score=118.38 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=94.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee------------------------------------------
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY------------------------------------------ 42 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 42 (192)
-.+|+|+|.+++|||||+|+|++..+........+...
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 46999999999999999999999776221111000000
Q ss_pred ----------eEEEEECCeEEEEEEEeCCCCCccc-------------ccccccC-CCCCEEEEEEECCChhhhhchhhh
Q psy14754 43 ----------VADIEVDSKQVELALWDTAGQEDYD-------------RLRPLSY-PDTDVILMCFSIDSPDSLENIPEK 98 (192)
Q Consensus 43 ----------~~~~~~~~~~~~~~l~D~~g~~~~~-------------~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~ 98 (192)
...+... ....+.++||||-.... .....++ ..+|++++|+|++.....+.. ..
T Consensus 131 ~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~ 208 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 208 (772)
T ss_dssp STTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HH
T ss_pred CCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HH
Confidence 0000000 11247899999954311 1111222 578999999999875322221 13
Q ss_pred hHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754 99 WTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 99 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
+...+... +.|+++|+||+|+............ .+. +....+..+++.+||+++.|++++++.+.+.
T Consensus 209 ll~~L~~~--g~pvIlVlNKiDlv~~~~~~~~il~--~~~--------~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLE--NKL--------LPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHCTT--CSSEEEEEECTTSSCTTCCSHHHHT--TCS--------SCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHhc--CCCEEEEEeCcccCCcchhhHHHHH--HHh--------hhhhccCCceEEecccccccchhHHHHHHHH
Confidence 44444443 7899999999999864321111000 000 0001122467889999999999999998863
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=2.7e-14 Score=106.64 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=53.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCc--eeeeeeEEEEECC-------------------eEEEEEEEeCCCCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT--VFENYVADIEVDS-------------------KQVELALWDTAGQE 64 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~-------------------~~~~~~l~D~~g~~ 64 (192)
++|+++|.+|+|||||+|+|.+........+. ...+.. ...+.. ....+.+|||||..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 68999999999999999999986432211111 111111 111111 23579999999987
Q ss_pred cccccc-------cccCCCCCEEEEEEECCC
Q psy14754 65 DYDRLR-------PLSYPDTDVILMCFSIDS 88 (192)
Q Consensus 65 ~~~~~~-------~~~~~~~~~~i~v~d~~~ 88 (192)
.+.+.. ...++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 653221 123678999999999986
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.8e-15 Score=110.71 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=74.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccccc-------ccccCCCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRL-------RPLSYPDT 77 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~ 77 (192)
.+|+++|.||+|||||+|+|++........|.++... .-.+.+. +..++++||||...-.+. ....++.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~--~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK--GAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET--TEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC--CcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 4799999999999999999999775544444444332 2233343 457899999995432221 12345679
Q ss_pred CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy14754 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122 (192)
Q Consensus 78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 122 (192)
|++++|+|++++..-.......+..........|.++++||.|..
T Consensus 151 d~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999999987432222122222222223468999999999974
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.57 E-value=3.7e-15 Score=106.96 Aligned_cols=125 Identities=15% Similarity=0.051 Sum_probs=68.9
Q ss_pred EEEEEEeCCCCCccccccc------ccCCCCCEEEEEEECCChhhhhchhhhh---HHHHhhhCCCCcEEEEeecccccC
Q psy14754 53 VELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
+.+.+|||||......... ..+.. +++++++|+....+.......+ ...... .+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence 5799999999866432211 13355 8888898875432222211111 111111 2689999999999865
Q ss_pred CccchhhhhhccCCCCCHH--------------HHHHHHHHcCC-ceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 124 DPNTIKELNKMKQEPVKPE--------------EGRAMAQKINA-FAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
..........+........ ...++.+.++. .+++++||++++|+++++++|.+.+..
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 3211000000000000000 00011233332 478999999999999999999887654
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.53 E-value=2.9e-15 Score=111.07 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=63.1
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy14754 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL 131 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 131 (192)
+..+.++||||...-. ......+|.+++++|....+..+.+.. . +. ..|.++++||+|+.....
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~-~---i~----~~~~ivvlNK~Dl~~~~~----- 210 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK-G---IF----ELADMIAVNKADDGDGER----- 210 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT-T---HH----HHCSEEEEECCSTTCCHH-----
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH-H---Hh----ccccEEEEEchhccCchh-----
Confidence 4578999999964321 123468899999999875543322221 1 11 245688889999754211
Q ss_pred hhccCCCCCHHHHHHHHHHc---C------CceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754 132 NKMKQEPVKPEEGRAMAQKI---N------AFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
......+++.... . ..+++.+||+++.|++++++.|.+...
T Consensus 211 -------~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 211 -------RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp -------HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1111122222211 1 247889999999999999999988654
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.47 E-value=2e-14 Score=97.83 Aligned_cols=111 Identities=5% Similarity=-0.002 Sum_probs=70.7
Q ss_pred CCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhh---HHHHhhh--CCCCcEEEEeecc-cccCCccchhhhhh
Q psy14754 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW---TPEVKHF--CPNVPIILVGNKK-DLRNDPNTIKELNK 133 (192)
Q Consensus 60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~--~~~~p~ivv~nK~-D~~~~~~~~~~~~~ 133 (192)
.+||...+..|.++++++|++|||+|.+|.+.++ ..+.+ ...+... ..+.|++|++||. |+...-...+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3478999999999999999999999999975544 33333 2333332 2589999999995 67554333222222
Q ss_pred ccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 134 MKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+.... + ...+.+..|||++|+|+.+.++|+...+..++
T Consensus 188 L~L~~--------l---~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 188 LHLNL--------L---NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp TTGGG--------G---CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred cCCcC--------C---CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 21110 1 13378899999999999999999988775543
No 209
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.42 E-value=2.9e-13 Score=98.95 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=80.4
Q ss_pred eEEEEEEEe-CCC-----CCcccccccccCCCCCEEEEEEECCChh-hhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754 51 KQVELALWD-TAG-----QEDYDRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 51 ~~~~~~l~D-~~g-----~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
+.+.+..+| +.| ++++.......+.++|++++|+|++++. ++..+ +.|+..+.. .++|+++|+||+|+.+
T Consensus 48 D~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 48 DYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLN 124 (302)
T ss_dssp CEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCC
T ss_pred eEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCC
Confidence 345555555 223 6777788888899999999999999886 66655 467776655 3899999999999965
Q ss_pred CccchhhhhhccCCCCC-HHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHH
Q psy14754 124 DPNTIKELNKMKQEPVK-PEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176 (192)
Q Consensus 124 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 176 (192)
.. .+. .++...+.+.++ ++++++||+++.|++++++.+..
T Consensus 125 ~~------------~v~~~~~~~~~~~~~g-~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 125 EE------------EKKELERWISIYRDAG-YDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HH------------HHHHHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHTTT
T ss_pred cc------------ccHHHHHHHHHHHHCC-CeEEEEECCCCCCHHHHHhhccC
Confidence 21 001 233445555556 58999999999999999988654
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.36 E-value=3.6e-13 Score=101.06 Aligned_cols=89 Identities=19% Similarity=0.117 Sum_probs=48.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCe---------------EEEEEEEeCCCCCccc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSK---------------QVELALWDTAGQEDYD 67 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~l~D~~g~~~~~ 67 (192)
..++|+++|.+|+|||||+|+|.+..+.....|+.+... ...+.+.+. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 467999999999999999999998865333333332221 122222221 2359999999977654
Q ss_pred c-------cccccCCCCCEEEEEEECCChhhh
Q psy14754 68 R-------LRPLSYPDTDVILMCFSIDSPDSL 92 (192)
Q Consensus 68 ~-------~~~~~~~~~~~~i~v~d~~~~~~~ 92 (192)
+ .+...++.+|++++|+|+++.+++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 3 334556789999999999875443
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.32 E-value=6.6e-13 Score=94.70 Aligned_cols=111 Identities=5% Similarity=-0.007 Sum_probs=75.4
Q ss_pred CCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhH---HHHhhh--CCCCcEEEEeec-ccccCCccchhhhhh
Q psy14754 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT---PEVKHF--CPNVPIILVGNK-KDLRNDPNTIKELNK 133 (192)
Q Consensus 60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~--~~~~p~ivv~nK-~D~~~~~~~~~~~~~ 133 (192)
.+||...+..|.++++++|++|||+|.+|.+.++ ..+.+. ..+... ..+.|++|++|| .|+..+-...+..+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4678999999999999999999999999987654 322222 333322 368999999997 588654333322222
Q ss_pred ccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy14754 134 MKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+.... ....+.+..|||++|+|+.+.++|+.+.+..++
T Consensus 273 L~L~~-----------l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNL-----------LNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGG-----------GCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCcc-----------CCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 21110 012367899999999999999999998875543
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.23 E-value=4.5e-12 Score=95.11 Aligned_cols=113 Identities=10% Similarity=0.053 Sum_probs=66.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC-----CCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc--------c
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD-----QFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR--------P 71 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~ 71 (192)
..+|+++|.+|+|||||+|+|++. ........+.++.......+.. .+.++||||........ .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 468999999999999999999986 2222111112222222233332 27999999954322111 1
Q ss_pred cc--CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754 72 LS--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 72 ~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
.. -+..+.++++++....--+..+ ..+..+.. .+.|+++++||.|..+.
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l--~~l~~l~~--~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGL--ARLDYIKG--GRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEE
T ss_pred HHhcccccCceEEEEcCCceEEECCE--EEEEEccC--CCceEEEEecCCccccc
Confidence 11 1568999999987533111122 11122222 26899999999998763
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.14 E-value=9.7e-12 Score=93.22 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=65.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCC------cccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc-------
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQFPE------VYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP------- 71 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~------- 71 (192)
..+|+++|.+|+|||||+|+|++..... ....+.++.......+... +.++||||.........
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 4689999999999999999999863211 1111122222223333332 79999999543221110
Q ss_pred ---ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy14754 72 ---LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 72 ---~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
...+..+.++++++......+..+ ..+..+.. .+.|+++++||.|..+.
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEE
T ss_pred HHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCcccccc
Confidence 113567888899887432112221 11222222 26899999999998763
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.13 E-value=8.6e-11 Score=88.10 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=72.5
Q ss_pred CCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCH
Q psy14754 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKP 141 (192)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 141 (192)
..+.|.+......+.++++++|+|++++. ..|...+.++..+.|+++|+||+|+.+.. ...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-------------~~~ 115 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-------------VKH 115 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-------------SCH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-------------cCH
Confidence 45678888888888999999999999863 35666666666689999999999997531 122
Q ss_pred HHH----HHHHHHcCC--ceEEEeccCCcCCHHHHHHHHHHHH
Q psy14754 142 EEG----RAMAQKINA--FAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 142 ~~~----~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
+.. ..+++..+. .+++.+||+++.|++++++.+.+..
T Consensus 116 ~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 116 DKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 222 233444442 2789999999999999999997654
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.12 E-value=3.4e-10 Score=81.33 Aligned_cols=118 Identities=20% Similarity=0.213 Sum_probs=65.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCccc--------CceeeeeeEEEEECCeE--EEEEEEeCCCCCcccc------
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYV--------PTVFENYVADIEVDSKQ--VELALWDTAGQEDYDR------ 68 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~l~D~~g~~~~~~------ 68 (192)
+++++++|++|||||||++.|++...+.... +.........+.+.... ..++++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 6899999999999999999999854332210 00000011111122222 2689999998321100
Q ss_pred ----------------------cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754 69 ----------------------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126 (192)
Q Consensus 69 ----------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 126 (192)
.....+..+++.++++|... +.+......++..+.. ..++++|++|+|.....+
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK---VVNIIPVIAKADTMTLEE 157 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT---TSEEEEEETTGGGSCHHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh---cCcEEEEEeccccCCHHH
Confidence 00112224688888888553 2233333344455544 389999999999876433
No 216
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.06 E-value=3e-09 Score=80.59 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=88.2
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce-eeee-eEEEEECCeE-EEEEEEeCCCCCcccccc-----cccCCC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENY-VADIEVDSKQ-VELALWDTAGQEDYDRLR-----PLSYPD 76 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~-~~~~l~D~~g~~~~~~~~-----~~~~~~ 76 (192)
...++++|++|||||||+|.+.+...+....-.. .... ...+.+.... -.+.+||++|........ ...+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 4479999999999999999999854332211110 0000 0011111111 147899999843211100 111223
Q ss_pred CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHH----HHHHH----
Q psy14754 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEE----GRAMA---- 148 (192)
Q Consensus 77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---- 148 (192)
.+..++ ++... ++..+-.+...+... +.|+++|.||.|+.--++...-+ ......+ .+++.
T Consensus 149 ~~~~~~-lS~G~---~~kqrv~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgL-----D~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 149 YDFFII-ISATR---FKKNDIDIAKAISMM--KKEFYFVRTKVDSDITNEADGEP-----QTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp CSEEEE-EESSC---CCHHHHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCC-----TTCCHHHHHHHHHHHHHHHH
T ss_pred cCCeEE-eCCCC---ccHHHHHHHHHHHhc--CCCeEEEEecCcccccCcccccC-----CHHHHHHHHHHHHHHHHHHH
Confidence 455554 66652 111112333444433 68999999999985211111100 1111222 22232
Q ss_pred HH--cCCceEEEecc--CCcCCHHHHHHHHHHHHhhhcc
Q psy14754 149 QK--INAFAYLECSA--KSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 149 ~~--~~~~~~~~~Sa--~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
.. .....++.+|+ ..+.|++++.+.+.+.+.+..+
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 11 12235788999 6677899999999988876653
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.04 E-value=2.8e-10 Score=85.36 Aligned_cols=103 Identities=21% Similarity=0.242 Sum_probs=71.7
Q ss_pred CCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCH
Q psy14754 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKP 141 (192)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 141 (192)
.++.|++......+.++++++|+|++++.+ .|...+.++..+.|+++|+||+|+.+...... ...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~---------~~~ 121 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSVKYP---------KLL 121 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHH---------HHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCccCHH---------HHH
Confidence 477888888888888999999999998752 34445555556899999999999976321000 001
Q ss_pred HHHHHHHHHcCC--ceEEEeccCCcCCHHHHHHHHHHHHh
Q psy14754 142 EEGRAMAQKINA--FAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 142 ~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
+....+.+..+. .+++.+||+++.|++++++.+.+...
T Consensus 122 ~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 122 RWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 122233444442 37899999999999999999877653
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.02 E-value=6.2e-11 Score=91.84 Aligned_cols=165 Identities=13% Similarity=0.104 Sum_probs=84.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHh------hCCCC----CcccCcee-------eee-eEEEE-----------------EC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFS------KDQFP----EVYVPTVF-------ENY-VADIE-----------------VD 49 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~------~~~~~----~~~~~~~~-------~~~-~~~~~-----------------~~ 49 (192)
...|+++|++|+||||++++|. +.+.. +.+.+... ... ...+. ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 5579999999999999999998 33210 11011000 000 00000 00
Q ss_pred CeEEEEEEEeCCCCCcccc-cccc---c--CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcE-EEEeeccccc
Q psy14754 50 SKQVELALWDTAGQEDYDR-LRPL---S--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLR 122 (192)
Q Consensus 50 ~~~~~~~l~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~ 122 (192)
..++.+.++||||...... .+.. . +..+|.+++|+|+..... .. .....+.. ..|+ ++|+||.|..
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~--~~a~~~~~---~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CE--AQAKAFKD---KVDVASVIVTKLDGH 253 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HH--HHHHHHHH---HHCCCCEEEECTTSC
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HH--HHHHHHHh---hcCceEEEEeCCccc
Confidence 1345789999999653221 1100 0 126899999999987532 11 12223332 2675 8999999986
Q ss_pred CCccchhhh-hhccCCCCC-HHHHHHHHHHcCCceEEEeccCCcCC-HHHHHHHHHHH
Q psy14754 123 NDPNTIKEL-NKMKQEPVK-PEEGRAMAQKINAFAYLECSAKSKEG-VREVFETATRA 177 (192)
Q Consensus 123 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~i~~~ 177 (192)
......-.. ..... .+. ...+..+.+-....|.+.+|+..|.| ++++++++.+.
T Consensus 254 ~~~g~~l~~~~~~g~-PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 254 AKGGGALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCTHHHHHHHHHCC-CEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cchHHHHHHHHHhCC-CeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 432211000 00000 000 00000000000112345589999999 99999998866
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.01 E-value=5.6e-10 Score=83.98 Aligned_cols=85 Identities=19% Similarity=0.128 Sum_probs=55.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeee-eEEEEECCe---------------EEEEEEEeCCCCCcc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENY-VADIEVDSK---------------QVELALWDTAGQEDY 66 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~l~D~~g~~~~ 66 (192)
...+++++|++|||||||+|+|.+... .....|+++... .-.+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 356899999999999999999999765 333233322221 222233321 135899999995432
Q ss_pred cc-------cccccCCCCCEEEEEEECCC
Q psy14754 67 DR-------LRPLSYPDTDVILMCFSIDS 88 (192)
Q Consensus 67 ~~-------~~~~~~~~~~~~i~v~d~~~ 88 (192)
.+ .+...++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 22334578999999999874
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=3.2e-09 Score=80.48 Aligned_cols=116 Identities=17% Similarity=0.230 Sum_probs=61.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccC---ceeeeeeEEEEECC--eEEEEEEEeCCCCCcccc------------
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP---TVFENYVADIEVDS--KQVELALWDTAGQEDYDR------------ 68 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~------------ 68 (192)
++++|+|++|||||||++.|++..+...... .........+.+.. -...++++|++|......
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 5699999999999999999998754321111 11111111222222 223689999998432100
Q ss_pred -------------ccc--ccCCCC--CE-EEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy14754 69 -------------LRP--LSYPDT--DV-ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126 (192)
Q Consensus 69 -------------~~~--~~~~~~--~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 126 (192)
... .....+ |+ ++++.|...+ +...+..++..+. .+.|+|+|.||+|.....+
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD---SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh---hCCCEEEEEcchhccchHH
Confidence 000 012232 33 4555555433 3333223444443 4899999999999876433
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.87 E-value=2.4e-09 Score=77.46 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=35.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 64 (192)
..++|+++|.+|+|||||+|+|.+.........+.++.....+.... .+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 56899999999999999999999876443322222222111222222 58999999953
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.86 E-value=4.6e-09 Score=75.93 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=66.9
Q ss_pred EEeCCCCC-cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhcc
Q psy14754 57 LWDTAGQE-DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135 (192)
Q Consensus 57 l~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 135 (192)
+-..|||. .........++.+|+++.|+|+.++.+... ..+.++..++|.++|+||+|+.+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~------~~l~~~l~~kp~ilVlNK~DL~~~~~--------- 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN------PMIEDILKNKPRIMLLNKADKADAAV--------- 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC------HHHHHHCSSSCEEEEEECGGGSCHHH---------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC------HHHHHHHCCCCEEEEEECcccCCHHH---------
Confidence 44678875 344455567789999999999999866543 11222224899999999999975100
Q ss_pred CCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy14754 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
.+...++.+..+ ++++.+||+++.|++++++.+.+.+..
T Consensus 68 -----~~~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 68 -----TQQWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp -----HHHHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 112223333334 588999999999999999988877654
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.77 E-value=3.7e-09 Score=75.65 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=35.1
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 65 (192)
++++++|.+|+|||||+|+|.+............+.....+... ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 58999999999999999999987764332222222222222222 2579999999643
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.64 E-value=3.2e-08 Score=75.59 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=62.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC------CC----CCcccC----------------------ceeee--eeEEEEECC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD------QF----PEVYVP----------------------TVFEN--YVADIEVDS 50 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~------~~----~~~~~~----------------------~~~~~--~~~~~~~~~ 50 (192)
+..|+++|++|+||||++++|... +. .+.+.+ ++.+. .........
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998762 11 000000 00000 000000011
Q ss_pred eEEEEEEEeCCCCCcccccc------cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCC-c-EEEEeeccccc
Q psy14754 51 KQVELALWDTAGQEDYDRLR------PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV-P-IILVGNKKDLR 122 (192)
Q Consensus 51 ~~~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~ 122 (192)
..+.+.++||||........ ...+..+|.+++|+|+.... +.. .....+. +.. | ..+|+||.|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~-~~~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAG-IQAKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHH-HHHHHHH---TTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHH-HHHHHHh---hcccCCeEEEEeCCCCc
Confidence 34578999999965421100 11223689999999987653 111 1122222 245 6 88999999975
Q ss_pred C
Q psy14754 123 N 123 (192)
Q Consensus 123 ~ 123 (192)
.
T Consensus 252 ~ 252 (432)
T 2v3c_C 252 A 252 (432)
T ss_dssp S
T ss_pred c
Confidence 4
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.63 E-value=5.7e-08 Score=74.03 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=61.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh------CCC----CCcccCce-------eeeeeEEEEE------------------C
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK------DQF----PEVYVPTV-------FENYVADIEV------------------D 49 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~------~~~----~~~~~~~~-------~~~~~~~~~~------------------~ 49 (192)
+..|+++|++|+||||++.+|.. .+. .+.+.+.. .......+.. .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999988864 111 01111100 0000000000 0
Q ss_pred CeEEEEEEEeCCCCCccccccc------ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754 50 SKQVELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 50 ~~~~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
..++.+.++||||......... .....+|.+++|+|+....... .....+... -.+..||+||.|...
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~----~~a~~f~~~--~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY----NQALAFKEA--TPIGSIIVTKLDGSA 253 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHHS--CTTEEEEEECCSSCS
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH----HHHHHHHhh--CCCeEEEEECCCCcc
Confidence 1225789999999543221110 1122578999999998653221 122333322 245679999999764
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.49 E-value=1e-07 Score=75.22 Aligned_cols=62 Identities=23% Similarity=0.088 Sum_probs=38.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce--eeeeeEEE--EE-CCeEEEEEEEeCCCCCc
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--FENYVADI--EV-DSKQVELALWDTAGQED 65 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~--~~-~~~~~~~~l~D~~g~~~ 65 (192)
...+|+|+|.+|+|||||+|+|++....-....++ .+...... .. ...+..+.++||||...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 45789999999999999999999876421111111 11111110 01 22345789999999654
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.42 E-value=2.3e-07 Score=73.97 Aligned_cols=25 Identities=28% Similarity=0.592 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
.|+|+|+.|||||||++.+.+-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4999999999999999999987544
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.41 E-value=1.7e-07 Score=68.22 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=52.5
Q ss_pred EEEEEEEeCCCCCc--cccccc------ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeeccccc
Q psy14754 52 QVELALWDTAGQED--YDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLR 122 (192)
Q Consensus 52 ~~~~~l~D~~g~~~--~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 122 (192)
.+.+.++||||... ...... .....+|.+++|+|+... ++..+ ....+.. ..| ..+|+||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~-~~~~~~~---~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYD-LASKFNQ---ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHH-HHHHHHH---TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHH-HHHHHHh---hCCCCEEEEeCCCCC
Confidence 45689999999765 211111 123368999999998643 22211 1222222 466 78999999974
Q ss_pred CCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHH
Q psy14754 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169 (192)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 169 (192)
.. ...........+ .|+..++ .|+++++
T Consensus 253 ~~----------------~g~~~~~~~~~~-~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 AK----------------GGGALSAVAATG-ATIKFIG--TGEKIDE 280 (297)
T ss_dssp TT----------------HHHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred cc----------------hHHHHHHHHHHC-cCEEEEe--CCCChhh
Confidence 31 222334555555 4776665 4555543
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.40 E-value=2.4e-07 Score=66.28 Aligned_cols=94 Identities=10% Similarity=-0.024 Sum_probs=59.7
Q ss_pred CCCCCc-ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCC
Q psy14754 60 TAGQED-YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEP 138 (192)
Q Consensus 60 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 138 (192)
.|||.. ........+.++|+++.|+|+.++.+..... +. .+ ++|.++|+||+|+.+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll-----~k~~iivlNK~DL~~~~~------------ 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS-----RKETIILLNKVDIADEKT------------ 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT-----TSEEEEEEECGGGSCHHH------------
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc-----CCCcEEEEECccCCCHHH------------
Confidence 466543 2234455678999999999999986654421 11 11 799999999999975210
Q ss_pred CCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy14754 139 VKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
.+...++.+..+ +++ .+||+++.|++++++.+...
T Consensus 64 --~~~~~~~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 64 --TKKWVEFFKKQG-KRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp --HHHHHHHHHHTT-CCE-EECCTTSCHHHHHHHHCCCT
T ss_pred --HHHHHHHHHHcC-CeE-EEECCCCcCHHHHHHHHHHh
Confidence 112223333334 477 99999999999998877553
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.38 E-value=2.2e-07 Score=70.76 Aligned_cols=91 Identities=9% Similarity=0.031 Sum_probs=51.5
Q ss_pred EEEEEEEeCCCCCc--ccccc----c--ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy14754 52 QVELALWDTAGQED--YDRLR----P--LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 52 ~~~~~l~D~~g~~~--~~~~~----~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
.+.+.++||||... ..... . ...-..+.+++|+|+....... .....+... -.+..||+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~----~~a~~f~~~--~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY----DLASRFHQA--SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH----HHHHHHHHH--CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH----HHHHHHhcc--cCCcEEEEecccccc
Confidence 45678999999644 11110 0 0111468999999998753222 222333332 256789999999754
Q ss_pred CccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCH
Q psy14754 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGV 167 (192)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (192)
. ...........+ .|+..++. |+++
T Consensus 253 ~----------------~G~als~~~~~g-~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 K----------------GGGALSAVVATG-ATIKFIGT--GEKI 277 (433)
T ss_dssp C----------------HHHHHHHHHHHT-CEEEEEEC--CSSS
T ss_pred c----------------chHHHHHHHHHC-CCEEEEEC--CCCh
Confidence 2 223334444445 58777765 4443
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.30 E-value=2.7e-07 Score=67.30 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=57.7
Q ss_pred ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy14754 70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ 149 (192)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (192)
....+.++|.+++|+|+.++..-....+.++..... .++|.+||+||+|+.++.... ..........+
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~----------~~~~~~~~~y~ 147 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTE----------DTIQAYAEDYR 147 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHH----------HHHHHHHHHHH
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhH----------HHHHHHHHHHH
Confidence 334577999999999999875333333344443333 389999999999997631100 00111222223
Q ss_pred HcCCceEEEeccCCcCCHHHHHHH
Q psy14754 150 KINAFAYLECSAKSKEGVREVFET 173 (192)
Q Consensus 150 ~~~~~~~~~~Sa~~~~gi~~~~~~ 173 (192)
..+ ++++.+||.++.|++++++.
T Consensus 148 ~~g-~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 148 NIG-YDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp HHT-CCEEECCHHHHTTCTTTGGG
T ss_pred hCC-CeEEEEecCCCCCHHHHHhh
Confidence 334 58899999999998877654
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.23 E-value=6.4e-07 Score=66.03 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
.--++++|+.||||||+++.+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999876
No 233
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.04 E-value=3.6e-06 Score=64.38 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.-|.|+|++++|||||+|+|++.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 34889999999999999999863
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.94 E-value=5.3e-05 Score=56.38 Aligned_cols=84 Identities=20% Similarity=0.269 Sum_probs=52.7
Q ss_pred cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH---H
Q psy14754 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA---Q 149 (192)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 149 (192)
.+.++|.+++|.+ .++..-....+.++...... ++|.+||+||+|+.++.. ......+. .
T Consensus 127 i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~--------------~~~~~~~~~~y~ 189 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG--------------MDFVNEQMDIYR 189 (358)
T ss_dssp EEECCCEEEEEEE-STTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH--------------HHHHHHHHHHHH
T ss_pred HHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh--------------HHHHHHHHHHHH
Confidence 3568999998755 45643222323444333333 789999999999976210 01122222 2
Q ss_pred HcCCceEEEeccCCcCCHHHHHHHH
Q psy14754 150 KINAFAYLECSAKSKEGVREVFETA 174 (192)
Q Consensus 150 ~~~~~~~~~~Sa~~~~gi~~~~~~i 174 (192)
..+ ++++.+||.++.|++++...+
T Consensus 190 ~~G-~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 190 NIG-YRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp TTT-CCEEECBTTTTBTHHHHHHHH
T ss_pred hCC-CcEEEEecCCCcCHHHHHHhc
Confidence 334 588999999999999887654
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.80 E-value=1.3e-05 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.+++++|++|||||||++.+.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999887643
No 236
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.76 E-value=2.4e-07 Score=71.67 Aligned_cols=106 Identities=15% Similarity=0.053 Sum_probs=58.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee---eeEEEEECCeEEEEEEEeCCCCCc--ccccc--------
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN---YVADIEVDSKQVELALWDTAGQED--YDRLR-------- 70 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~-------- 70 (192)
.+..|+++|.+||||||+.++|........ ..+..-. ... ...+......+||..|.+. .+..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~--~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRR--DMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHH--HHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhh--hhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999876421100 0010000 000 0001112346788888632 23332
Q ss_pred cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEe
Q psy14754 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG 116 (192)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 116 (192)
..++....+.++|+|.++. ..... +.|...++.. +.+++++-
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEE
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEE
Confidence 3344456788999999986 23322 4566666554 34444443
No 237
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.76 E-value=1.1e-05 Score=58.82 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-.++++|++|||||||+|.|.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC---
T ss_pred CEEEEECCCCCCHHHHHHHhccccc
Confidence 3689999999999999999987543
No 238
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.74 E-value=1.9e-05 Score=54.93 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=21.9
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhh
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
|+.....|+++|++||||||+.+.|.+
T Consensus 1 mm~~~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 1 MTAIAPVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp --CCSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444557899999999999999998865
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.71 E-value=2e-05 Score=52.96 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
--++++|++|||||||++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998743
No 240
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.67 E-value=0.00013 Score=53.15 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-.++++|++|||||||+|.+. ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 357899999999999999998 543
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.67 E-value=1.8e-05 Score=60.54 Aligned_cols=65 Identities=17% Similarity=0.087 Sum_probs=38.0
Q ss_pred EEEEEEEeCCCCCccccccc------ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccC
Q psy14754 52 QVELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRN 123 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 123 (192)
++.+.++||||......... ..+...+.+++|+|+.... ... .....+.. ..+ .-+|+||.|...
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~-~~~~~f~~---~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAA-NTAKAFNE---ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THH-HHHHHHHH---HSCCCCEEEECTTSSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHH-HHHHHHhc---cCCCeEEEEecCCCCc
Confidence 45789999999654321111 1133678999999987542 221 11222222 345 357999999754
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.67 E-value=2.5e-05 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-.++|+|++|||||||++.+.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998863
No 243
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.64 E-value=3.4e-05 Score=53.08 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=23.0
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
|+....-|+++|++||||||+++.|....
T Consensus 4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 4 MTERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp -CCCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred ccCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 33344568999999999999999998764
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.59 E-value=3.6e-05 Score=51.96 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEcCCCCchhHHHHHHhhCC
Q psy14754 8 LVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~ 29 (192)
++++|++|||||||++.|.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999998643
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.58 E-value=3.8e-05 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999875
No 246
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.58 E-value=4.3e-05 Score=52.20 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...|+++|++||||||+.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988653
No 247
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.57 E-value=4.4e-05 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~ 26 (192)
....|+|+|++||||||+++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999998
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.56 E-value=3.9e-05 Score=51.82 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-.|+++|++||||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999876
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.54 E-value=4.7e-05 Score=52.86 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
--++|+|++|||||||++.+.+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3578999999999999999987543
No 250
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.54 E-value=4.7e-05 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
-++++|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999998754
No 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.53 E-value=5e-05 Score=51.72 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.--|+|+|++|||||||++.|.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457899999999999999998753
No 252
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.53 E-value=5.4e-05 Score=50.26 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...|+++|++||||||+.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998764
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.53 E-value=4.7e-05 Score=52.36 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...|+|+|++|||||||++.+.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988764
No 254
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.53 E-value=4.1e-05 Score=50.97 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=17.7
Q ss_pred eEEEEcCCCCchhHHHHHHh
Q psy14754 7 KLVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~ 26 (192)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 37899999999999999754
No 255
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.52 E-value=5.1e-05 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++|+|++|||||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998754
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.52 E-value=6.5e-05 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
+..|++.|++||||||+.+.|..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35699999999999999999987
No 257
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.51 E-value=5.8e-05 Score=50.71 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhh
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
|......|+++|++||||||+.+.|..
T Consensus 1 m~~~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 1 MKKNLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp ----CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 444456799999999999999999865
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.50 E-value=6e-05 Score=50.91 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEcCCCCchhHHHHHHhhCC
Q psy14754 8 LVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~ 29 (192)
|+|+||+|||||||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998653
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.45 E-value=7.6e-05 Score=49.06 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
-++++|+.|||||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999998865
No 260
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.44 E-value=8.3e-05 Score=52.04 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=21.2
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhh
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
|+..++.|++.|++||||||+.+.+..
T Consensus 5 m~~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 5 MVSGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp ----CCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456678999999999999999998864
No 261
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.44 E-value=8.1e-05 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988865
No 262
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.42 E-value=9.7e-05 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999987654
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.42 E-value=9.7e-05 Score=50.56 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
...-|+++|++||||||+++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999987643
No 264
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.41 E-value=9.8e-05 Score=50.27 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=23.4
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
|+.....|+|.|.+||||||+.+.|...
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 3456788999999999999999998875
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.41 E-value=8.6e-05 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.7
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
...|+++|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998764
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.40 E-value=9e-05 Score=50.01 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
-++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 267
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.39 E-value=0.0001 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.38 E-value=9.7e-05 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.|++.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 269
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.38 E-value=0.00012 Score=50.09 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=21.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
....|++.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999875
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.37 E-value=0.0001 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
-.|+++|++||||||+++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 271
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.37 E-value=0.00011 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.37 E-value=0.00011 Score=48.74 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCchhHHHHHH
Q psy14754 6 KKLVIVGDGACGKTCLLIVF 25 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l 25 (192)
.-|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 273
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.36 E-value=0.00011 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988764
No 274
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.36 E-value=0.00012 Score=51.00 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999987653
No 275
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.36 E-value=0.00014 Score=54.13 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998654
No 276
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.35 E-value=0.00012 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
++|+++|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988865
No 277
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.35 E-value=0.0001 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...|+|+|+.|||||||++.+.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988763
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.35 E-value=0.00015 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999988653
No 279
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.33 E-value=0.00015 Score=48.33 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..-|++.|++||||||+.+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998864
No 280
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.33 E-value=0.00016 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999988653
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.32 E-value=0.00012 Score=52.21 Aligned_cols=22 Identities=14% Similarity=0.290 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.++|+|+.|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998874
No 282
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.32 E-value=0.00015 Score=48.64 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=21.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
....|++.|++||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999874
No 283
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=0.00015 Score=48.89 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=20.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
.+..|++.|.+||||||+.+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998864
No 284
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.31 E-value=0.00017 Score=50.88 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
.+++|++.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
No 285
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.31 E-value=0.00012 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 286
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.31 E-value=0.00016 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 378999999999999999988653
No 287
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.31 E-value=0.00013 Score=49.81 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999887
No 288
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.31 E-value=0.00012 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999876
No 289
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.30 E-value=0.00016 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-++++|+.|||||||++.+.+-..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999988653
No 290
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.30 E-value=0.00017 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999998654
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.30 E-value=0.00014 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..|+++|++||||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 292
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.30 E-value=0.00015 Score=48.43 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.-++++|++|||||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35889999999999999999864
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.29 E-value=0.00017 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
....|++.|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
No 294
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.29 E-value=0.00017 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999988654
No 295
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.29 E-value=0.00014 Score=52.93 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.++|+|++|||||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999998753
No 296
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.29 E-value=0.00011 Score=49.82 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
....|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 297
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.29 E-value=0.00018 Score=50.25 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 478999999999999999988654
No 298
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.28 E-value=0.00019 Score=50.63 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999988653
No 299
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.28 E-value=0.00017 Score=52.51 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFPE 32 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~ 32 (192)
.++++|++|||||||++.+.+...+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred eEEEECCCCCcHHHHHHHhccccccc
Confidence 57899999999999999999865443
No 300
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.28 E-value=0.00018 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999988654
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.27 E-value=0.00017 Score=48.50 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 302
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.26 E-value=0.00019 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 478999999999999999987653
No 303
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.26 E-value=0.0002 Score=48.76 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=21.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhh
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..++.|++.|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998865
No 304
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.26 E-value=0.0002 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999988653
No 305
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.26 E-value=0.00018 Score=49.04 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
-.|+++|++||||||+...|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998875
No 306
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.26 E-value=0.00013 Score=48.76 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-.+++.|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988764
No 307
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.25 E-value=0.0002 Score=50.41 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999988653
No 308
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.25 E-value=0.00016 Score=51.18 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.++++|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999986
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.25 E-value=0.00018 Score=48.91 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998876
No 310
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.25 E-value=0.00016 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999987643
No 311
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.25 E-value=0.00019 Score=49.04 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 312
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.25 E-value=0.00011 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=14.8
Q ss_pred eEEEEcCCCCchhHHHHHHh-hC
Q psy14754 7 KLVIVGDGACGKTCLLIVFS-KD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~-~~ 28 (192)
-++++|++||||||+++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48899999999999999998 64
No 313
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.24 E-value=0.00022 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~ 26 (192)
....|+|+|++||||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999988
No 314
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.24 E-value=0.00016 Score=51.52 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++++|+.|||||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999998764
No 315
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.24 E-value=0.00022 Score=48.54 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
....|++.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998875
No 316
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.23 E-value=0.00018 Score=49.02 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..-|+++|++||||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988654
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.23 E-value=0.00017 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..-|+|+|++|||||||++.+.+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhh
Confidence 456899999999999999988764
No 318
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.22 E-value=0.00018 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999986
No 319
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.22 E-value=0.0002 Score=48.25 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 320
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.22 E-value=0.00022 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
....|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 321
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.22 E-value=0.0002 Score=49.19 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
....|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 322
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.22 E-value=0.00023 Score=51.23 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999988654
No 323
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.21 E-value=0.00018 Score=49.54 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998865
No 324
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.21 E-value=0.00025 Score=51.30 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...-|++.|++||||||+...|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998753
No 325
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.21 E-value=0.00023 Score=51.02 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++|+|+.|||||||++.+.+-..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999988654
No 326
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.20 E-value=0.00025 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999988654
No 327
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.20 E-value=0.0002 Score=50.33 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=18.2
Q ss_pred eEEEEcCCCCchhHHHHHHh
Q psy14754 7 KLVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~ 26 (192)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999999887
No 328
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.19 E-value=0.00026 Score=47.56 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999988764
No 329
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.19 E-value=0.00025 Score=51.94 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=22.3
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhh
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
|+.++..|+|+|++|||||||...|..
T Consensus 1 ~~~m~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 1 MSSLPPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp --CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 566667899999999999999998875
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.18 E-value=0.0003 Score=47.92 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
....|++.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998874
No 331
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.18 E-value=0.0002 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
-++|+|++|||||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998743
No 332
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.18 E-value=0.00025 Score=49.02 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
....|+++|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988865
No 333
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.17 E-value=0.0001 Score=49.07 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++|+|++|||||||++.+.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988753
No 334
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.16 E-value=0.00028 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999987653
No 335
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.16 E-value=0.00024 Score=49.23 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
....|+|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 336
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.14 E-value=0.00024 Score=50.04 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..-|+|+|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998876
No 337
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.14 E-value=0.00032 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
...|++.|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45699999999999999998874
No 338
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.13 E-value=0.0003 Score=46.37 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 339
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.13 E-value=0.00022 Score=53.37 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.2
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.-+++|+|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 340
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.13 E-value=0.00022 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++++|++|+|||||++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988744
No 341
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.13 E-value=0.00028 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988865
No 342
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.12 E-value=0.00034 Score=49.91 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998875
No 343
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.12 E-value=0.00025 Score=52.85 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.++|+|+.|||||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998764
No 344
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.12 E-value=0.00019 Score=51.95 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=19.8
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhh
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
|+...+-|+|.|++||||||+.+.|..
T Consensus 1 Ms~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSKKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CTTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 666777899999999999999988764
No 345
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.12 E-value=0.00017 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++|+|+.|||||||++.+.+-..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEEEECCCCchHHHHHHHHHcCCC
Confidence 589999999999999999887643
No 346
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.11 E-value=0.00035 Score=48.20 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=21.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
.++.|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 347
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.11 E-value=0.00036 Score=46.96 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
+...|++.|.+||||||+.+.|..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 348
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.11 E-value=0.00029 Score=49.02 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
...|++.|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.10 E-value=0.00034 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...|+|+|++||||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999998875
No 350
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.09 E-value=0.0003 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999874
No 351
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.08 E-value=0.00034 Score=48.60 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
+.|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.07 E-value=0.0004 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
.++-|+|+|++|||||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988754
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.07 E-value=0.00036 Score=46.27 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..+.++|++|||||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999998863
No 354
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.06 E-value=0.00037 Score=51.89 Aligned_cols=24 Identities=42% Similarity=0.715 Sum_probs=21.3
Q ss_pred EEEEcCCCCchhHHHHHHhhCCCC
Q psy14754 8 LVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
++++|+.|||||||++.+.+-..+
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCchHHHHHHHHhcCCCC
Confidence 789999999999999999987543
No 355
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.06 E-value=0.00037 Score=48.15 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..+.|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998865
No 356
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.06 E-value=0.00034 Score=49.61 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999865
No 357
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.05 E-value=0.00045 Score=50.03 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
....|+|.|++|||||||++.|..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999987654
No 358
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.05 E-value=0.00052 Score=46.10 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=21.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
....|++.|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999988653
No 359
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.04 E-value=0.00044 Score=51.58 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-++++|+.|||||||++.+.+-..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 378999999999999999988654
No 360
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.04 E-value=0.00034 Score=47.38 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988865
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.04 E-value=0.00037 Score=48.21 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhHHHHHHhh
Q psy14754 8 LVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~ 27 (192)
|+++|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988765
No 362
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.04 E-value=0.0003 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++++|+.|||||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998764
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.03 E-value=0.00036 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
-.|+++|+.||||||+++.+.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999999875
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.03 E-value=0.00041 Score=46.76 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 365
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.02 E-value=0.00046 Score=51.33 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-++++|+.|||||||++.+.+-..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 378999999999999999988654
No 366
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.02 E-value=0.00036 Score=47.59 Aligned_cols=23 Identities=39% Similarity=0.309 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..-|+|+|++||||||+++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 367
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.01 E-value=0.00047 Score=48.17 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
...+|+++|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998865
No 368
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.01 E-value=0.00035 Score=51.03 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..-|+|+|++|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998763
No 369
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.01 E-value=0.00036 Score=52.35 Aligned_cols=22 Identities=14% Similarity=0.290 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.++|+|++||||||+++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998874
No 370
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.01 E-value=0.00034 Score=51.63 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
.++|+|+.|||||||++.+.+-..+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 6899999999999999999886543
No 371
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.00 E-value=0.00033 Score=46.81 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=16.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
....|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 372
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.00 E-value=0.00034 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-.++|+|+.|||||||++.+.+-..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999988643
No 373
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.00 E-value=0.00041 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++++|++|+|||||++.+.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998743
No 374
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.99 E-value=0.00052 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-++++|+.|||||||++.+.+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 378999999999999999988654
No 375
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.98 E-value=0.00053 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.9
Q ss_pred EEEEcCCCCchhHHHHHHhhCCC
Q psy14754 8 LVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
++++|+.|||||||++.+.+-..
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHHcCCC
Confidence 78999999999999999998654
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.98 E-value=0.00035 Score=49.49 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
....|+++|++||||||+...|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999998653
No 377
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.98 E-value=0.00049 Score=49.59 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=21.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..+.|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998874
No 378
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.98 E-value=0.00054 Score=51.11 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-++++|+.|||||||++.+.+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 378999999999999999988654
No 379
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.98 E-value=0.00045 Score=46.69 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 380
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.97 E-value=0.00053 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 381
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.97 E-value=0.00044 Score=50.36 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
-++++|+.||||||+++.+.+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 382
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.97 E-value=0.00042 Score=52.76 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
-++|+|+.|||||||++.+++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999988743
No 383
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.94 E-value=0.0006 Score=51.06 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-++++|+.|||||||++.+.+-..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 368999999999999999988654
No 384
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.94 E-value=0.00017 Score=49.47 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 385
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.94 E-value=0.00059 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-++++|+.|||||||++.+.+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 378999999999999999988654
No 386
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.94 E-value=0.00054 Score=45.29 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 387
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.92 E-value=0.00055 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988764
No 388
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.91 E-value=0.00054 Score=47.48 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-++++|++|+|||||+..+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999998753
No 389
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.90 E-value=0.00048 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-.++|+|++||||||+++.+++--.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3599999999999999999987553
No 390
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.90 E-value=0.00066 Score=48.01 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..+.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998866
No 391
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.88 E-value=0.00049 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-++++|+.|||||||++.+.+-..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 378999999999999999988654
No 392
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.88 E-value=0.00047 Score=48.12 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..-|+|.|+.||||||+++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999998875
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.87 E-value=0.00065 Score=45.32 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998876
No 394
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.87 E-value=0.00058 Score=50.42 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.+++.|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998864
No 395
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.87 E-value=0.00061 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++++|++|+|||||++.+.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 48999999999999999998753
No 396
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.85 E-value=0.00075 Score=44.48 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988865
No 397
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.85 E-value=0.00075 Score=48.91 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999876
No 398
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.83 E-value=0.00067 Score=50.06 Aligned_cols=23 Identities=48% Similarity=0.489 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.-|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46999999999999999988764
No 399
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.82 E-value=0.0006 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++++|++|||||||++.+.+-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 47899999999999999998753
No 400
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.81 E-value=0.00055 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
-++|+|+.|||||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999999764
No 401
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.80 E-value=0.00064 Score=49.21 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=18.8
Q ss_pred EEEEcCCCCchhHHHHHHhhC
Q psy14754 8 LVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~ 28 (192)
++|+|++|+|||||+..+.+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999988764
No 402
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.80 E-value=0.00072 Score=45.17 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
-.+|+|+.|||||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999865
No 403
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.79 E-value=0.00074 Score=50.31 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
--++++|+.||||||++..+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3589999999999999998875
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.79 E-value=0.00079 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
.-.|+++|++||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 405
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.78 E-value=0.0008 Score=46.25 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 406
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.77 E-value=0.00096 Score=45.25 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...|++.|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999988753
No 407
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.77 E-value=0.00048 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
-++++|+.|||||||++.+.+-..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 378999999999999999988654
No 408
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.00071 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++|+|+.|||||||++.+.+-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999988754
No 409
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.75 E-value=0.001 Score=47.09 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+..+++.|++|+|||++++++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999998764
No 410
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.74 E-value=0.00091 Score=46.73 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 411
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.73 E-value=0.00092 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..-|++.|.+||||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998765
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.72 E-value=0.00087 Score=51.90 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
--++|+|+.|||||||++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 3589999999999999998865
No 413
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.71 E-value=0.00015 Score=49.49 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=43.4
Q ss_pred EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhh---CCCCcEEEEeeccccc
Q psy14754 53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLR 122 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~ 122 (192)
+.+.++|+|+.. .......+..+|.+++++..+... ... ..+...+... .++.++.+|+|+.|..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSA-AGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHH-HHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHH-HHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 568999999865 233344556789999999876543 444 2455555433 2367889999999853
No 414
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.70 E-value=0.0031 Score=48.26 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=17.7
Q ss_pred eeEEEEcCCCCchhHHHHHHh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~ 26 (192)
.-|.|+|+.++|||+|+|.|+
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 345699999999999999665
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.69 E-value=0.0013 Score=45.80 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...-|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456999999999999999988764
No 416
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.69 E-value=0.001 Score=46.27 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.-.+++.|++|+|||+++..+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988753
No 417
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.68 E-value=0.00079 Score=44.80 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.-.+++.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888764
No 418
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.67 E-value=0.00097 Score=49.51 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
+++++|+.|+|||||++.+.+...
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998753
No 419
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.67 E-value=0.0012 Score=45.98 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
.++++++|+|||||||+...|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 57899999999999999988755
No 420
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.66 E-value=0.0011 Score=44.99 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988764
No 421
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.65 E-value=0.001 Score=49.87 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999886
No 422
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.65 E-value=0.00084 Score=45.87 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.+++.|+||+||||++.++.+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999888653
No 423
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.64 E-value=0.0013 Score=42.68 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=17.1
Q ss_pred EEEEcCCCCchhHHHHHHh
Q psy14754 8 LVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~ 26 (192)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999965
No 424
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.62 E-value=0.0015 Score=44.42 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 425
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.60 E-value=0.0013 Score=44.72 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
....|+++|++|+|||+|...|...-
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999998754
No 426
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.58 E-value=0.00097 Score=47.44 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=21.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 3 AIRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.....|++.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999988754
No 427
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.57 E-value=0.0017 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
.++++|+.|||||||++.+.+...+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5799999999999999999986543
No 428
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.56 E-value=0.0013 Score=50.90 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
-++|+|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999876
No 429
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.53 E-value=0.0017 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
-++++|+.|||||||++.+.+...+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4789999999999999999986543
No 430
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.51 E-value=0.002 Score=41.42 Aligned_cols=26 Identities=8% Similarity=-0.009 Sum_probs=22.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
....|++.|++|+|||++...+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 35579999999999999999987654
No 431
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0019 Score=45.19 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
....|+++|++||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0019 Score=51.52 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
.++++|+.|||||||++.+.+...+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 4799999999999999999885543
No 433
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.50 E-value=0.0017 Score=51.62 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhhccC
Confidence 589999999999999999988653
No 434
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.49 E-value=0.0015 Score=47.16 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.-.+++.|++|+|||++++++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 435
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.49 E-value=0.0014 Score=46.98 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 436
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.49 E-value=0.0015 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.5
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
+++++|++|+|||||++.+.+...
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 689999999999999999988653
No 437
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.49 E-value=0.0019 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999988654
No 438
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.0016 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...+++.|++|+|||++++++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999764
No 439
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.46 E-value=0.0017 Score=44.93 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
-+++.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998865
No 440
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.46 E-value=0.0018 Score=46.91 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+.-+++.|+||+|||+|+.++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456778899999999999998764
No 441
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.46 E-value=0.0018 Score=45.79 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+..+++.|++|+|||+++.++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998763
No 442
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.44 E-value=0.0018 Score=44.21 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.5
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 443
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.44 E-value=0.0017 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-.|++.|++|+|||++++++.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35999999999999999998864
No 444
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.43 E-value=0.0018 Score=48.46 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=17.3
Q ss_pred EEEEcCCCCchhHHHHHHh
Q psy14754 8 LVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~ 26 (192)
.+|+|+.|||||||++++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999976
No 445
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.43 E-value=0.0018 Score=51.59 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 589999999999999999988653
No 446
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.42 E-value=0.0019 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Confidence 689999999999999999987654
No 447
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.42 E-value=0.0018 Score=49.33 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..-|+++|++||||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999998763
No 448
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.39 E-value=0.0022 Score=44.13 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
++.|++.|++||||||+...|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999988865
No 449
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.38 E-value=0.0019 Score=45.17 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy14754 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
-+++.|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999877654
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.37 E-value=0.0026 Score=50.80 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
.++++|+.|||||||++.+.+...+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhCCCCC
Confidence 4799999999999999999886543
No 451
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.35 E-value=0.0019 Score=46.82 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
-.++++|+.|+||||++..|..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988754
No 452
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.35 E-value=0.0025 Score=50.11 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
.++++|+.|||||||++.+.+...+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999986543
No 453
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.35 E-value=0.0021 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-.+++.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999988763
No 454
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.33 E-value=0.0023 Score=46.65 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
--|+++|++|+||||++..+.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 3588999999999999988764
No 455
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.33 E-value=0.0028 Score=43.73 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=23.3
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 1 MAAIRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
|+....-|++-|.+||||||+++.+...
T Consensus 1 ~m~~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 1 MMGRGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCCCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4445677999999999999999998763
No 456
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.32 E-value=0.0017 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 589999999999999998887653
No 457
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.31 E-value=0.0031 Score=49.68 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
.++|+|+.|||||||++.+.+...+
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999986543
No 458
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.31 E-value=0.0025 Score=42.68 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.4
Q ss_pred EEEEcCCCCchhHHHHHHhhC
Q psy14754 8 LVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~ 28 (192)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 459
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.30 E-value=0.0029 Score=50.54 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.8
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
.++|+|+.|||||||++.+.+...+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999986543
No 460
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.27 E-value=0.0023 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
-+.|+|++|+|||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999988754
No 461
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.0022 Score=47.47 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=19.0
Q ss_pred EEEEcCCCCchhHHHHHHhh
Q psy14754 8 LVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~ 27 (192)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999877
No 462
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.24 E-value=0.0023 Score=50.92 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+-..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc
Confidence 589999999999999999887653
No 463
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.21 E-value=0.0025 Score=47.51 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.-.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998763
No 464
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.21 E-value=0.0028 Score=46.02 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..+++.|++|+|||+++..+..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999986654
No 465
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.20 E-value=0.0031 Score=41.81 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-.-|++.|++|+||||+...|...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 346899999999999999999874
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.0036 Score=49.99 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=21.9
Q ss_pred EEEEcCCCCchhHHHHHHhhCCCCC
Q psy14754 8 LVIVGDGACGKTCLLIVFSKDQFPE 32 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~~~ 32 (192)
++++|+.|||||||++.+.+...+.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p~ 405 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKPD 405 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC
Confidence 7999999999999999999866543
No 467
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.19 E-value=0.0039 Score=45.48 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..-|+|+||+|||||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 345889999999999999999765
No 468
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.17 E-value=0.003 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++|.|++|+||||+++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999987643
No 469
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.17 E-value=0.0039 Score=44.45 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
....+++.|++|+|||+++.++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998764
No 470
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.003 Score=48.20 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+-.|++.||||+|||+|+.++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999998864
No 471
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0036 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+-.|++.||||+|||+|+.++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 472
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.15 E-value=0.0032 Score=45.58 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...+++.|++|+|||+++..+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999998753
No 473
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.15 E-value=0.003 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.+++.|++|+||||++..+.+.-
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999987653
No 474
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.15 E-value=0.0031 Score=46.33 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
-.|++.|++|+|||+|+.++....
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 469999999999999999998753
No 475
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.11 E-value=0.0036 Score=42.72 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=16.8
Q ss_pred EEEEcCCCCchhHHHHHHh
Q psy14754 8 LVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~ 26 (192)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5789999999999998864
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.10 E-value=0.0039 Score=43.64 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..-|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999998764
No 477
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.10 E-value=0.0047 Score=44.96 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+.-|+|+|++|||||||...+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345889999999999999998764
No 478
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.09 E-value=0.0047 Score=45.53 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.-|+|+|++|||||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998864
No 479
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.08 E-value=0.0041 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=19.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..+|+++|++|+||||+...|.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999976654
No 480
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.08 E-value=0.0035 Score=45.45 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.+++.|++|+|||+++..+...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 6999999999999999988764
No 481
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0035 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+-.|++.||||+|||+|+.++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999998864
No 482
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.08 E-value=0.0019 Score=41.41 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...|++.|++|+|||++...+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 457999999999999999988764
No 483
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.06 E-value=0.0025 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=20.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
+|+++|++|||||||++.|.+-.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 78999999999999999998754
No 484
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.04 E-value=0.0039 Score=45.72 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..+++.|++|+|||+++.++...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998764
No 485
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.03 E-value=0.0045 Score=48.52 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
.+.-|+++|.+||||||+..+|..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988753
No 486
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.99 E-value=0.004 Score=45.94 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=19.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.+++.|++|+||||+++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988764
No 487
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.99 E-value=0.0017 Score=46.16 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..+++.|++|+|||+++.++...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998763
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.97 E-value=0.0045 Score=45.15 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.-.+++.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999887753
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.95 E-value=0.0048 Score=42.52 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=20.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh
Q psy14754 4 IRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
...-|++.|++||||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 345689999999999999998754
No 490
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.95 E-value=0.0036 Score=46.69 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.-.+++.|++|+|||++++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999998764
No 491
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.95 E-value=0.0037 Score=49.06 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=0.0
Q ss_pred EEEEcCCCCchhHHHHHHh
Q psy14754 8 LVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~ 26 (192)
++|+|++|||||||++.++
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 492
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0051 Score=46.45 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+-.|++.||||+|||+|+.++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 457999999999999999999764
No 493
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.92 E-value=0.0027 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
..|+++|++|||||||.+.|.+.-
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhh
Confidence 468999999999999999987643
No 494
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.91 E-value=0.0039 Score=43.40 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=17.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy14754 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..-|++.|++||||||+++.|..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999988764
No 495
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.90 E-value=0.0044 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
-.++++|++|+|||+|++++.+..
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999988653
No 496
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.89 E-value=0.0054 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy14754 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999986543
No 497
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.88 E-value=0.0044 Score=46.12 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-.+++.|++|+|||+++.++...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998764
No 498
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.87 E-value=0.0049 Score=45.89 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-.|++.|++|+|||+|+.++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999998764
No 499
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.87 E-value=0.0044 Score=46.89 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHh
Q psy14754 7 KLVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~ 26 (192)
-++|+|++|+|||||+..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 37899999999999999875
No 500
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.86 E-value=0.0047 Score=47.37 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy14754 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-.+++.|++|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988753
Done!