RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14754
(192 letters)
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 344 bits (885), Expect = e-123
Identities = 163/181 (90%), Positives = 170/181 (93%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct: 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 80
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 140
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LR D +T +EL KMKQEPV+ EEGR MA +I+AF YLECSAK+KEGVREVFE ATRA LQ
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
Query: 181 V 181
V
Sbjct: 201 V 201
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 343 bits (881), Expect = e-122
Identities = 153/185 (82%), Positives = 168/185 (90%)
Query: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
+ IRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVD KQVELALWDTA
Sbjct: 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTA 81
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
GQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKDL
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
R+D + EL +MKQEPV+ ++GRAMA +I A+ YLECSAK+KEGVREVFETATRAALQ
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201
Query: 182 KKKKK 186
+ +
Sbjct: 202 RYGSQ 206
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 339 bits (872), Expect = e-121
Identities = 93/178 (52%), Positives = 122/178 (68%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+V+VGDG CGKT LL+VF+ FPE Y PTVFE Y+ +++V K V L +WDTAGQ+DY
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY 95
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPL YPD V+L+CF + SP+S +NI +W PEV HFC VPII+VG K DLR D +
Sbjct: 96 DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS 155
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
+ +L + EPV G+ MA+ + A AYLECSA+ + V VF+ A AL + +
Sbjct: 156 LVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRGR 213
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 338 bits (870), Expect = e-120
Identities = 87/191 (45%), Positives = 128/191 (67%), Gaps = 5/191 (2%)
Query: 1 MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
M+ + K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ VD + V L LWD
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
TAGQEDY RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K
Sbjct: 64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
DLR+D + + + +G + ++I A AY+ECS+K+++ V+ VF+TA + L
Sbjct: 124 DLRDDKGYLAD----HTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179
Query: 180 QVKKKKKGRCR 190
Q ++K+ R
Sbjct: 180 QPPRRKEVPRR 190
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 336 bits (864), Expect = e-120
Identities = 82/180 (45%), Positives = 126/180 (70%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKT L++ ++ + +P Y+PT F+N+ A + VD + V L L DTAGQ+++
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
D+LRPL Y +TD+ L+CFS+ SP S +N+ EKW PE++ CP PIILVG + DLR D
Sbjct: 82 DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK 141
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
+ EL+K K++PV E + +A++I A +Y+ECSA +++ ++EVF+ A A +Q ++
Sbjct: 142 VLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQ 201
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 332 bits (854), Expect = e-118
Identities = 91/178 (51%), Positives = 129/178 (72%), Gaps = 1/178 (0%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
++ K+V+VGD CGKT LL VF+KD FPE YVPTVFENY A E+D++++EL+LWDT+G
Sbjct: 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 86
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
YD +RPLSYPD+D +L+CF I P++L+++ +KW E++ FCPN ++LVG K DLR
Sbjct: 87 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE-GVREVFETATRAALQ 180
D +T+ EL+ +Q PV ++G MA++I A Y+ECSA E VR++F AT A +
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 330 bits (849), Expect = e-117
Identities = 83/180 (46%), Positives = 114/180 (63%), Gaps = 10/180 (5%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+V+VGDGA GKTCLL+ FSK + P YVPTVFEN+ ++ +++ L LWDTAGQE+Y
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 84
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSY D+DV+L+CF++++ S +NI KW PE+KH+ +LVG K DLR D
Sbjct: 85 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD-- 142
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
+ V +EG + QK+ AY+E S+ +K G+ EVFE + K K
Sbjct: 143 --------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPVPK 194
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 329 bits (846), Expect = e-117
Identities = 104/173 (60%), Positives = 130/173 (75%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 91
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 326 bits (838), Expect = e-116
Identities = 92/181 (50%), Positives = 122/181 (67%), Gaps = 3/181 (1%)
Query: 1 MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
M+A R K V VGDGA GKTCLLI ++ + FP YVPTVF+N+ A++ V+ V L LWD
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPI+LVG K
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
DLR+D ++ P+ +G + + I A AY+ECS+KS+E V+ VF+ A R L
Sbjct: 123 DLRDDKQFF--IDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
Query: 180 Q 180
Q
Sbjct: 181 Q 181
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 323 bits (831), Expect = e-115
Identities = 91/179 (50%), Positives = 129/179 (72%), Gaps = 1/179 (0%)
Query: 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
++ K+V+VGD CGKT LL VF+KD FPE YVPTVFENY A E+D++++EL+LWDT+G
Sbjct: 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 64
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
YD +RPLSYPD+D +L+CF I P++L+++ +KW E++ FCPN ++LVG K DLR
Sbjct: 65 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE-GVREVFETATRAALQ 180
D +T+ EL+ +Q PV ++G MA++I A Y+ECSA E VR++F AT A +
Sbjct: 125 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 321 bits (825), Expect = e-114
Identities = 95/179 (53%), Positives = 132/179 (73%)
Query: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
A+ K V+VGDGA GKTCLL+ ++ D FPE YVPTVF++Y + V KQ L L+DTA
Sbjct: 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTA 74
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
GQEDYDRLRPLSYP TDV L+CFS+ +P S +N+ E+W PE+K + PNVP +L+G + DL
Sbjct: 75 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
R+DP T+ LN MK++P+ E+G+ +A++I A Y+ECSA +++G++ VF+ A A L
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 317 bits (815), Expect = e-112
Identities = 106/185 (57%), Positives = 133/185 (71%)
Query: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
+ K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTA
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
GQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K DL
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
R+D +TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181
Query: 182 KKKKK 186
KK
Sbjct: 182 PPVKK 186
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 314 bits (807), Expect = e-111
Identities = 82/189 (43%), Positives = 122/189 (64%), Gaps = 1/189 (0%)
Query: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
R KLV+VGD CGKT +L V +KD +PE YVPTVFENY A +E + ++VEL+LWDT+
Sbjct: 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTS 83
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
G YD +RPL Y D+D +L+CF I P+++++ +KW E+ +CP+ ++L+G K DL
Sbjct: 84 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDL 143
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE-GVREVFETATRAALQ 180
R D +T+ EL+ KQ P+ E+G A+A+++ A YLE SA + E + +F TA+ L
Sbjct: 144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203
Query: 181 VKKKKKGRC 189
+
Sbjct: 204 KPSPLPQKS 212
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 289 bits (740), Expect = 3e-99
Identities = 101/176 (57%), Positives = 128/176 (72%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAG E
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
DYDRLRPLSYP TDV L+CFS+ SP S ++ KW PEV+H CPN PIILVG K DLR+D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
+TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 160 bits (408), Expect = 8e-51
Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 18/181 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
++ + G G GK+ L++ F K F E Y+PTV + Y I D L + DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP--EVKHFCPNVPIILVGNKKDLRND 124
++ LS ++ +SI S SLE + + E+K ++PI+LVGNK D
Sbjct: 65 PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
++ V+ E A+A+ A++E SAK V+E+F+ K++
Sbjct: 125 ----------RE--VQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELLN---LEKRR 168
Query: 185 K 185
Sbjct: 169 T 169
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 160 bits (407), Expect = 2e-50
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 19/197 (9%)
Query: 1 MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
M +R K+VI+G GKT L F + +F E Y PTV Y + + + L L D
Sbjct: 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGN 117
TAGQ++Y L ++ +S+ S S + I E ++ H VP++LVGN
Sbjct: 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGN 137
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
K DL + V+ EG+ +A+ A ++E SA+ + + +F +
Sbjct: 138 KADLSP------------EREVQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVIQE 184
Query: 178 --ALQVKKKKKGRCRLL 192
++ ++ RC L+
Sbjct: 185 IARVENSYGQERRCHLM 201
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 158 bits (402), Expect = 1e-49
Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 32/204 (15%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
++V+ G G GK+ L++ F K F + Y+PT+ + Y I D L + DT G +
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF 69
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
++ LS ++ FS+ S SLE + K ++K ++P++LVGNK D
Sbjct: 70 PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE--- 126
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR-------- 176
Q V E +A+AQ+ A++E SAK V+E+F+
Sbjct: 127 ----------TQREVDTREAQAVAQEWKC-AFMETSAKMNYNVKELFQELLTLETRRNMS 175
Query: 177 --------AALQVKKKKKGRCRLL 192
+ + KG+C L+
Sbjct: 176 LNIDGKRSGKQKRTDRVKGKCTLM 199
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 157 bits (400), Expect = 2e-49
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+++VG G GK+ L + F D+F E Y PT ++Y + +D ++V++ + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R + + L FSI +S + ++ NVP +LVGNK DL +
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLED- 137
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
+ V EE + A++ N Y+E SAK++ V +VF R +++ +
Sbjct: 138 -----------KRQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMR---EIRAR 182
Query: 185 KK 186
K
Sbjct: 183 KM 184
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 157 bits (400), Expect = 2e-49
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV+VG G GK+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y
Sbjct: 23 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 82
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R + L F+I++ S +I + ++K +VP++LVGNK DL
Sbjct: 83 SAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDL--- 138
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
V ++ +A+ ++E SAK+++GV + F T R Q + K
Sbjct: 139 ----------PTRTVDTKQAHELAKSYGI-PFIETSAKTRQGVEDAFYTLVREIRQYRMK 187
Query: 185 K 185
K
Sbjct: 188 K 188
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 157 bits (399), Expect = 2e-49
Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 20/190 (10%)
Query: 1 MAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
M + K+ I+G + GK+ L I F + QF + Y PT+ + I V+ ++ L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGN 117
TAGQ++Y D + ++ +S+ S S E I + ++ +PI+LVGN
Sbjct: 61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGN 119
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
KKDL + + + EEG+A+A+ NA A+LE SAK + +VF
Sbjct: 120 KKDLHME----------RV--ISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIIL- 165
Query: 178 ALQVKKKKKG 187
+ +K
Sbjct: 166 --EAEKMDGA 173
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 157 bits (399), Expect = 2e-49
Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 19/184 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV+VG G GK+ L I F + F Y PT+ ++Y VD L + DTAGQE++
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 70
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R L+ F+I+ S + K ++ + P++LVGNK DL +
Sbjct: 71 GAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQ 129
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
+Q V E A + AY E SAK + V E FE R V+K
Sbjct: 130 ----------RQ--VPRSEASAFGASHHV-AYFEASAKLRLNVDEAFEQLVR---AVRKY 173
Query: 185 KKGR 188
++
Sbjct: 174 QEQE 177
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 157 bits (399), Expect = 3e-49
Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 28/199 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV+VG GK+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R + L F+I++ S E+I + ++K +VP++LVGNK DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL--- 121
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV--- 181
V ++ + +A+ ++E SAK+++GV + F T R +
Sbjct: 122 ----------PSRTVDTKQAQDLARSYGI-PFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
Query: 182 --------KKKKKGRCRLL 192
KKK K +C ++
Sbjct: 171 MSKDGKKKKKKSKTKCVIM 189
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 156 bits (397), Expect = 3e-49
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 19/179 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+V++G G GK+ L + F F E Y PT+ + Y +IEVDS L + DTAG E +
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R L + ++ +S+ + S ++I + ++ VP+ILVGNK DL +
Sbjct: 65 ASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLES- 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
+ V EGRA+A++ ++E SAKSK V E+F R Q+
Sbjct: 123 -----------EREVSSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVR---QMNY 166
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 154 bits (393), Expect = 1e-48
Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 18/179 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV++G G GK+ L + F + F E Y PT+ ++Y +EVD +Q L + DTAG E +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R L + + +SI + + ++ + ++ +VP+ILVGNK DL +
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLED- 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
+ V E+G+ +A++ A+LE SAKSK V E+F R Q+ +
Sbjct: 123 -----------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR---QINR 167
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 155 bits (394), Expect = 1e-48
Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 19/180 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+++VG G GK+ L + F D+F E Y PT ++Y + +D ++V++ + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R + + L FSI +S + ++ NVP +LVGNK DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLED- 123
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
+ V EE + A + N Y+E SAK++ V +VF R +++ +
Sbjct: 124 -----------KRQVSVEEAKNRADQWNV-NYVETSAKTRANVDKVFFDLMR---EIRAR 168
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 154 bits (391), Expect = 2e-48
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 20/179 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV+VG G GK+ L I ++ F + PT+ ++Y + +D + L + DTAGQE+Y
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R + L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL--- 120
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
V+ + + +A+ Y+E SAK+++GV + F T R ++++
Sbjct: 121 ----------AARTVESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLVR---EIRQ 165
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 154 bits (391), Expect = 7e-48
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+++VG G GK+ L + F D+F E Y PT ++Y + +D ++V++ + DTAGQEDY
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGNKKDLRND 124
+R + + L FSI +S + ++ NVP +LVGNK DL +
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLED- 133
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
+ V EE + A++ N Y+E SAK++ V +VF R +++ +
Sbjct: 134 -----------KRQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMR---EIRAR 178
Query: 185 KK 186
K
Sbjct: 179 KM 180
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 151 bits (385), Expect = 2e-47
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQED 65
K+++VG+ GK+ L F Q + E+ Y I VD ++V L ++D Q D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 66 YD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGNKKDLR 122
L+ D L+ FS+ S +PE ++ ++P+ILVGNK DL
Sbjct: 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
++ V EEGR +A ++ ++E SA RE+FE A R Q++
Sbjct: 123 RS----------RE--VSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVR---QIR 166
Query: 183 KKK 185
++
Sbjct: 167 LRR 169
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 152 bits (386), Expect = 3e-47
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 21/184 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQED 65
K+++VG+ GK+ L F Q + P E+ Y I VD ++V L ++D Q D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 66 YD-RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGNKKDLR 122
LR D L+ FS+ S +PE ++ ++P+ILVGNK DL
Sbjct: 85 AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLA 143
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
++ V EEGR +A ++ ++E SA RE+FE A R Q++
Sbjct: 144 RS----------RE--VSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVR---QIR 187
Query: 183 KKKK 186
++
Sbjct: 188 LRRG 191
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 151 bits (384), Expect = 4e-47
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV+VGDG GK+ L I F + F + Y PT+ ++Y+ E+D++ L + DTAGQE++
Sbjct: 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 79
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R D L+ +S+ S E++ +++ + + P+ILV NK DL +
Sbjct: 80 SAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMH- 137
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE-GVREVFETATRAALQVKK 183
V ++G+ MA K N Y+E SAK V + F R +++
Sbjct: 138 -----------LRKVTRDQGKEMATKYNI-PYIETSAKDPPLNVDKTFHDLVR---VIRQ 182
Query: 184 K 184
+
Sbjct: 183 Q 183
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 148 bits (375), Expect = 7e-46
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 21/184 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
++V++GD GKT L +F+ Q +++ + Y + VD + L + DT E
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 67 DR--LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGNKKDLR 122
D+ + ++ +SI S E+ + +++ H +VPIILVGNK DL
Sbjct: 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLA 124
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
V EEGRA A + ++E SA + V E+FE R Q++
Sbjct: 125 R------------CREVSVEEGRACAVVFDC-KFIETSATLQHNVAELFEGVVR---QLR 168
Query: 183 KKKK 186
+++
Sbjct: 169 LRRR 172
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 148 bits (375), Expect = 9e-46
Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 21/181 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQED 65
K+ IVG+ + GK+ L+ + + + P + +I VD + L + D G +
Sbjct: 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPE--GGRFKKEIVVDGQSYLLLIRDEGGPPE 79
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN 123
D ++ FS++ S + + + + F VP++LVG + +
Sbjct: 80 LQFAA-----WVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
+ R ++ + Y E A V VF+ + + ++K
Sbjct: 134 A----------NPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183
Query: 184 K 184
K
Sbjct: 184 K 184
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 147 bits (373), Expect = 2e-45
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 21/182 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
L I+G GK+ L + F +F Y P + + Y ++ VD + V L + DTA +
Sbjct: 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP 82
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPIILVGNKKDLRN 123
R L+ +S+DS S ++ E K ++P +L+GNK D+
Sbjct: 83 -RNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK-SKEGVREVFETATRAALQVK 182
+Q V EG A+A + + E SA E V+ VF A R + +
Sbjct: 142 Y----------RQ--VTKAEGVALAGRFGC-LFFEVSACLDFEHVQHVFHEAVR---EAR 185
Query: 183 KK 184
++
Sbjct: 186 RE 187
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 145 bits (369), Expect = 5e-45
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 20/181 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K++++G GK+ L +F Y I VD ++ L ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
L D ++ +S+ S E + +++ +VPIILVGNK DL
Sbjct: 63 RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVR- 120
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
V +EGRA A + ++E SA V+ +FE R Q++ +
Sbjct: 121 -----------SREVSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVR---QIRLR 165
Query: 185 K 185
+
Sbjct: 166 R 166
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 146 bits (370), Expect = 9e-45
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KL I G GK+ L++ F +F Y PT+ Y +D + V + + DTAGQED
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT 89
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
R + ++ + I S E + + NV +ILVGNK DL +
Sbjct: 90 -IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHS 147
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK-SKEGVREVFETATRAALQVKK 183
+Q V EEG +A ++ A+ ECSA + + E+F R +V++
Sbjct: 148 ----------RQ--VSTEEGEKLATELAC-AFYECSACTGEGNITEIFYELCR---EVRR 191
Query: 184 KK 185
++
Sbjct: 192 RR 193
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 143 bits (363), Expect = 4e-44
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 19/177 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
K+V+VG+GA GK+ ++ + K F + Y T+ F I+V+ + V L LWDTAGQ
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL--ERQIQVNDEDVRLMLWDTAGQ 64
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
E++D + Y ++ FS +S E I W +V ++P LV NK DL +
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLD 123
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
+K EE +A+++ + S K V EVF+ LQ
Sbjct: 124 ------------DSCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 143 bits (364), Expect = 1e-43
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
KLV+VGDG GKT + +F + YV T+ E + + ++ +WDTAGQE
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
+ LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D+++
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD-- 133
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
K+K + +K N Y + SAKS + F R + +
Sbjct: 134 ------RKVK------AKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 139 bits (353), Expect = 2e-42
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
K++++GDG GK+ L+ + ++F T+ F N D+EVD V + +WDTAGQ
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN--KDLEVDGHFVTMQIWDTAGQ 66
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
E + LR Y +D L+ FS+D S +N+ W E ++ + P +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNK 125
Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
D+ +Q V EE +A + + Y E SAK V FE A R
Sbjct: 126 IDISE-----------RQ--VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
Query: 179 LQ 180
L
Sbjct: 173 LA 174
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 140 bits (355), Expect = 2e-42
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 23/185 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
K+V+ GD A GK+ L+ K++F E T+ F+ + VD ++ L LWDTAGQ
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKT--LIVDGERTVLQLWDTAGQ 87
Query: 64 EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
E R R ++ + D +L+ + + S NI +W ++ VPI+LVGNK
Sbjct: 88 E---RFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKA 143
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
D+R+ Q+ V G +A A + E SAK + E R
Sbjct: 144 DIRDTA------ATEGQKCVPGHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAR--- 193
Query: 180 QVKKK 184
+VKK+
Sbjct: 194 EVKKR 198
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 139 bits (353), Expect = 2e-42
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
KL+I+GD GK+ LL+ F+ + F Y+ T+ F+ + +E++ ++V+L +WDTAGQ
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFK--IRTVEINGEKVKLQIWDTAGQ 68
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
E + + Y T +++ + + S +S N+ ++W E+ C +V ILVGNK D
Sbjct: 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPE 127
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
++ V+ E+ A ++ E SAK V E+F T L+ KK
Sbjct: 128 ------------RKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKK 174
Query: 184 KK 185
Sbjct: 175 DN 176
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 139 bits (353), Expect = 3e-42
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 25/181 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
+++I+G GKT L+ F+ D F E TV F+ +E+ K++ L +WDTAGQ
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKT--VELRGKKIRLQIWDTAGQ 85
Query: 64 EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
E R ++ Y I++ + I ++ +++ KW + + + ++LVGNK
Sbjct: 86 E---RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKL 141
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
D + ++G AQ+I + E SAK V E+F L
Sbjct: 142 DCET------------DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189
Query: 180 Q 180
+
Sbjct: 190 K 190
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 139 bits (353), Expect = 3e-42
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 26/189 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQ--FPEVYVPTVFENYVADIEVDSKQVELAL---WDTA 61
++V++G+ GK+ L +F+ + Y + VD + + L W+
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGNKK 119
G+ ++ L D L+ +SI S E + +++ ++PIILVGNK
Sbjct: 99 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 155
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
DL V EGRA A + ++E SA + V+E+FE R
Sbjct: 156 DLVR------------CREVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVR--- 199
Query: 180 QVKKKKKGR 188
QV+ ++ +
Sbjct: 200 QVRLRRDSK 208
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 139 bits (353), Expect = 4e-42
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 24/186 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
KLV+VGD + GKTC++ F F E T+ + + +E+ K+V+L +WDTAGQE
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE- 89
Query: 66 YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
R R ++ Y + ++ + I S ++ W +V+ + N+ +L+GNK DL
Sbjct: 90 --RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDL 146
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
V E +++A+ + +E SAK V E F ++
Sbjct: 147 SE------------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT---EL 191
Query: 182 KKKKKG 187
+ G
Sbjct: 192 IMRHGG 197
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 138 bits (349), Expect = 6e-42
Identities = 47/178 (26%), Positives = 92/178 (51%), Gaps = 20/178 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
K+V++G+G GKT L++ + +++F + ++ T+ F + + K+V LA+WDTAGQ
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKK--LNIGGKRVNLAIWDTAGQ 65
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
E + L P+ Y D++ ++ + I DS + + + W E++ + + +VGNK DL
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
+ V +E + A+ + A + SAK +G+ E+F + ++
Sbjct: 125 K------------ERHVSIQEAESYAESVGAK-HYHTSAKQNKGIEELFLDLCKRMIE 169
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 137 bits (347), Expect = 1e-41
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 24/187 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSK-QVELALWDTAG 62
K+V++GDGA GKT L F+++ F + Y T+ F I + V L +WD G
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRR--ITLPGNLNVTLQIWDIGG 65
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNK 118
Q ++ +L+ + I + S EN+ E W VK + LVGNK
Sbjct: 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNK 124
Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
DL + M+ +KPE+ Q+ N F+ SAK+ + V F+
Sbjct: 125 IDLEH----------MRT--IKPEKHLRFCQE-NGFSSHFVSAKTGDSVFLCFQKVAAEI 171
Query: 179 LQVKKKK 185
L +K K
Sbjct: 172 LGIKLNK 178
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 137 bits (347), Expect = 1e-41
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 20/183 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
KLV++GD GK+ L++ F KDQF E T+ F + + V+ V+ +WDTAGQ
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQT--LAVNDATVKFEIWDTAGQ 71
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
E Y L P+ Y ++ F + + S E +KW E++ PN+ + L GNK DL
Sbjct: 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLL 130
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
+ V E+ + AQ+ F ++E SAK+ V+E+F R +V+
Sbjct: 131 D------------ARKVTAEDAQTYAQENGLF-FMETSAKTATNVKEIFYEIARRLPRVQ 177
Query: 183 KKK 185
+
Sbjct: 178 PTE 180
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 137 bits (347), Expect = 2e-41
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 23/186 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDS-KQVELALWDTAG 62
K++I+GD GKT L+ + D++ + Y T+ F ++ VD K + +WDTAG
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLT--KEVTVDGDKVATMQVWDTAG 67
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGN 117
QE + L Y D ++ + + + S ENI + W E P +++GN
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGN 126
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
K D ++ V + + +A+ + SAK+ V FE R+
Sbjct: 127 KIDAEES-----------KKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175
Query: 178 ALQVKK 183
ALQ +
Sbjct: 176 ALQQNQ 181
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 137 bits (347), Expect = 2e-41
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 16/181 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++G+ GKT LL F++++F T+ E + + + V+ +WDTAG E
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Y + Y L+ F + + + E+W E+ H + ++LVGNK DL
Sbjct: 87 YRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQ- 144
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
V EE R A+ N +LE SA V FET + K
Sbjct: 145 -----------AREVPTEEARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192
Query: 185 K 185
+
Sbjct: 193 Q 193
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 137 bits (347), Expect = 3e-41
Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 16/182 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++G+ GKTCL+ F++ FP T+ + + +E++ ++V+L +WDTAGQE
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
+ + Y + +++ + I +S + +W E++ + V +LVGNK DL
Sbjct: 88 FRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAE- 145
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
+ V + ++ YLE SAK + V ++F + ++
Sbjct: 146 -----------RREVSQQRAEEFSEA-QDMYYLETSAKESDNVEKLFLDLACRLISEARQ 193
Query: 185 KK 186
Sbjct: 194 NT 195
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 137 bits (348), Expect = 3e-41
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 17/177 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVAD-IEVDSKQVELALWDTAGQE 64
K+ ++GDG GKT + +F + Y TV N+ ++ ++ +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRN 123
L+ + Y ++ F + S + +N+ +W E + PI++ NK D++N
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
+Q+ + + + + N + Y E SAK+ F R
Sbjct: 132 -----------RQK-ISKKLVMEVLKGKN-YEYFEISAKTAHNFGLPFLHLARIFTG 175
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 136 bits (345), Expect = 4e-41
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
K+ ++GD GK+ ++ F +D F PT+ F + ++ + +WDTAGQ
Sbjct: 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKT--VPCGNELHKFLIWDTAGQ 82
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
E + L P+ Y + ++ + I DS + +KW E+K H N+ + + GNK DL
Sbjct: 83 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLS 141
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
+ V ++ + A+ I A +E SAK+ + E+F+ +R +
Sbjct: 142 D------------IREVPLKDAKEYAESIGAI-VVETSAKNAINIEELFQGISRQIPPLD 188
Query: 183 KKK 185
+
Sbjct: 189 PHE 191
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 136 bits (344), Expect = 5e-41
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 20/184 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
K +I+GD GK+CLL+ F+ +F V+ T+ F + + +D KQ++L +WDTAGQ
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM--VNIDGKQIKLQIWDTAGQ 80
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLR 122
E + + Y L+ + I ++ ++ W + +H N+ I+L+GNK DL
Sbjct: 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
+ + VK EEG A A++ + ++E SAK+ V E F + +
Sbjct: 140 S------------RRDVKREEGEAFARE-HGLIFMETSAKTACNVEEAFINTAKEIYRKI 186
Query: 183 KKKK 186
++
Sbjct: 187 QQGL 190
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 135 bits (342), Expect = 6e-41
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 20/175 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
KLV++G+ A GK+ L++ F K QF E T+ F + +D V+ +WDTAGQ
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT--VCLDDTTVKFEIWDTAGQ 65
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
E Y L P+ Y ++ + I + +S + W E++ PN+ I L GNK DL
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLA 124
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
N + V +E ++ A + ++E SAK+ V E+F +
Sbjct: 125 N------------KRAVDFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAKK 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 135 bits (343), Expect = 8e-41
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 22/185 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE- 65
Query: 66 YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
R R ++ Y L+ + I + EN+ E+W E++ H N+ I+LVGNK DL
Sbjct: 66 --RYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
R+ V +E RA A+K N +++E SA V E F+ ++
Sbjct: 123 RH------------LRAVPTDEARAFAEK-NNLSFIETSALDSTNVEEAFKNILTEIYRI 169
Query: 182 KKKKK 186
+K+
Sbjct: 170 VSQKQ 174
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 135 bits (342), Expect = 1e-40
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 26/185 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
KL+++G+ + GKT L ++ D F +V TV F+ + K+++L +WDTAGQ
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKT--VYRHDKRIKLQIWDTAGQ 81
Query: 64 EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
E R R ++ Y L+ + I + +S + + W ++K + N +ILVGNK
Sbjct: 82 E---RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKC 137
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
DL + + V E+GR +A + F + E SAK V++VFE
Sbjct: 138 DLED------------ERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVIC 184
Query: 180 QVKKK 184
+ +
Sbjct: 185 EKMNE 189
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 135 bits (342), Expect = 1e-40
Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K +++G+ GK+CLL F + +F + T+ E I V K V+L +WDTAGQE
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE- 70
Query: 66 YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
R R ++ Y L+ + I S ++ + W + + N+ IIL GNKKDL
Sbjct: 71 --RFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDL 127
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
V E AQ+ N +LE SA + E V E F R L
Sbjct: 128 DA------------DREVTFLEASRFAQE-NELMFLETSALTGENVEEAFVQCARKILNK 174
Query: 182 KKKKK 186
+ +
Sbjct: 175 IESGE 179
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 135 bits (342), Expect = 1e-40
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 22/175 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAG E
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE- 89
Query: 66 YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
R R ++ Y L+ + I + EN+ E+W E++ H N+ I+LVGNK DL
Sbjct: 90 --RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDL 146
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
R+ V +E RA A+K N +++E SA V F+T
Sbjct: 147 RH------------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILT 188
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 134 bits (340), Expect = 1e-40
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K +I+GD GK+CLL F++ +F T+ E IEV ++++L +WDTAGQE
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
+ + Y LM + I + ++ W + ++ PN IIL+GNK DL
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEA- 134
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
Q V EE + A++ N +LE SAK+ E V + F A + Q
Sbjct: 135 -----------QRDVTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 135 bits (342), Expect = 2e-40
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 16/182 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K +++G GK+CLL F +++F + T+ E + V K V+L +WDTAGQE
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
+ + Y L+ + I S ++ ++ W + + PN+ +IL GNKKDL
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDP- 144
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
+ V E AQ+ N +LE SA + E V E F R L
Sbjct: 145 -----------EREVTFLEASRFAQE-NELMFLETSALTGENVEEAFLKCARTILNKIDS 192
Query: 185 KK 186
+
Sbjct: 193 GE 194
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 134 bits (340), Expect = 2e-40
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 26/187 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
KL+++GD GKTC+L FS+D F ++ T+ F+ IE+D K+++L +WDTAGQ
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRT--IELDGKRIKLQIWDTAGQ 67
Query: 64 EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
E R R ++ Y I++ + I + S +NI W ++ H +V +++GNK
Sbjct: 68 E---RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKC 123
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
D+ + + V E G +A ++E SAK+ V F T R
Sbjct: 124 DVND------------KRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIK 170
Query: 180 QVKKKKK 186
K
Sbjct: 171 AKMDKNW 177
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 135 bits (342), Expect = 2e-40
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 20/185 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
KLV +G+ + GKT L+ F D F Y T+ F + + ++ + V L LWDTAG
Sbjct: 18 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKT--MYLEDRTVRLQLWDTAGL 75
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
E + L P D+ V ++ + I + +S + KW +V+ +V I+LVGNK DL
Sbjct: 76 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLA 134
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
+ + V EEG A+++N ++E SAK+ V+++F A ++
Sbjct: 135 D------------KRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGME 181
Query: 183 KKKKG 187
+
Sbjct: 182 STQDR 186
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 134 bits (340), Expect = 2e-40
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 20/175 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
KLV +G+ + GKT L+ F D F Y T+ F + + ++ + V L LWDTAGQ
Sbjct: 16 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKT--MYLEDRTVRLQLWDTAGQ 73
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
E + L P D+ V ++ + I + +S KW +V+ +V I+LVGNK DL
Sbjct: 74 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLS 132
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
+ + V EEG A+++N ++E SAK+ V+++F A
Sbjct: 133 D------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAA 174
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 133 bits (338), Expect = 2e-40
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
K+ ++GD GK+ ++ F +D F PT+ F ++ ++ + +WDTAG
Sbjct: 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKT--VQYQNELHKFLIWDTAGL 65
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
E + L P+ Y + ++ + I ++ + + W E++ H P++ + + GNK DL
Sbjct: 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLT 124
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
+ V + + A I+A ++E SAK+ + E+F +R
Sbjct: 125 D------------VREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISRRIPS 169
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 134 bits (340), Expect = 3e-40
Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 26/186 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
K++I+G+ + GKT L ++ D F +V TV F+ I + K+++L +WDTAG
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKT--IYRNDKRIKLQIWDTAGL 67
Query: 64 EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
E R R ++ Y ++ + I + +S + + W+ ++K + N ++LVGNK
Sbjct: 68 E---RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKC 123
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
D+ + + V E GR +A + F + E SAK V++ FE
Sbjct: 124 DMED------------ERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVIC 170
Query: 180 QVKKKK 185
+ +
Sbjct: 171 EKMSES 176
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 134 bits (339), Expect = 3e-40
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 26/181 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
KL+I+G+ + GKT L ++ D F +V TV F+ + K+V+L +WDTAGQ
Sbjct: 25 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKT--VYRHEKRVKLQIWDTAGQ 82
Query: 64 EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
E R R ++ Y ++ + I + +S + + W ++K + N +ILVGNK
Sbjct: 83 E---RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKC 138
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
D+ + V E+G+ +A+++ F + E SAK VR+ FE A
Sbjct: 139 DMEE------------ERVVPTEKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAIC 185
Query: 180 Q 180
Sbjct: 186 D 186
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 134 bits (340), Expect = 3e-40
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 24/187 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
K++I+GD GKT L+ + +F Y T+ F ++ VD + V + +WDTAGQ
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT--KEVMVDDRLVTMQIWDTAGQ 67
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNK 118
E + L Y D ++ F + +P++ + + + W E N P +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
DL N V + +A N Y E SAK V + F+T R A
Sbjct: 127 IDLEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
Query: 179 LQVKKKK 185
L+ + +
Sbjct: 174 LKQETEV 180
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 133 bits (338), Expect = 5e-40
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 26/189 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELAL---WDTA 61
++V++G+ GK+ L +F+ + Y + VD + + L W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPIILVGNKK 119
G+ ++ L D L+ +SI S E E +++ ++PIILVGNK
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKS 124
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
DL V EGRA A + ++E SA + V+E+FE R
Sbjct: 125 DLVR------------XREVSVSEGRAXAVVFD-XKFIETSAAVQHNVKELFEGIVR--- 168
Query: 180 QVKKKKKGR 188
QV+ ++ +
Sbjct: 169 QVRLRRDSK 177
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 133 bits (336), Expect = 1e-39
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 19/180 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
KL+++GD GK+CLL+ F+ D + E Y+ T+ + + IE+D K ++L +WDTAGQE
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT- 152
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
++ V + A + +LE SAK+ V + F T ++KK+
Sbjct: 153 -----------KKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAA---EIKKR 197
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 132 bits (335), Expect = 1e-39
Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 18/183 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K++I+G+ GK+ LL+ F+ D F T+ + V I VD + +LA+WDTAGQE
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRN 123
+ L P Y +++ + + D+ + + W E++ +C ++ +LVGNK D
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK-- 133
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
+ V EG A+K ++ ++E SAK+ +GV+ FE +Q
Sbjct: 134 -----------ENREVDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQTPG 181
Query: 184 KKK 186
+
Sbjct: 182 LWE 184
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 131 bits (333), Expect = 2e-39
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTV---FENYVADIEVDSKQVELALWDTAG 62
K+++VGD GKTCLL+ F F ++ TV F N V ++VD +V+L +WDTAG
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKV--LDVDGVKVKLQMWDTAG 69
Query: 63 QEDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNK 118
QE R R ++ Y D +L+ + + + S +NI + W E+ + +V ++L+GNK
Sbjct: 70 QE---RFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNK 125
Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
D + + VK E+G +A++ ++E SAK+ V F +
Sbjct: 126 VDSAH------------ERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKEL 172
Query: 179 LQVKKKK 185
+ K
Sbjct: 173 KRRSMKA 179
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 131 bits (332), Expect = 2e-39
Identities = 51/181 (28%), Positives = 95/181 (52%), Gaps = 27/181 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
K++++GD GK+CLL+ F +D+F ++ T+ F+ ++++ K+V+L +WDTAGQ
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKT--VDINGKKVKLQIWDTAGQ 62
Query: 64 EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
E R R ++ Y I++ + I + NI ++W V H ++LVGNK
Sbjct: 63 E---RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKS 118
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
D+ + V ++G A+A+++ ++E SAK+ + V E+F T +
Sbjct: 119 DM-------------ETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ 164
Query: 180 Q 180
+
Sbjct: 165 E 165
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 132 bits (335), Expect = 2e-39
Identities = 50/184 (27%), Positives = 94/184 (51%), Gaps = 21/184 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
K++++GD GK+CLL+ F +D+F ++ T+ F+ ++++ K+V+L LWDTAGQ
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKT--VDINGKKVKLQLWDTAGQ 79
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
E + + Y I++ + + + NI ++W V H ++LVGNK D+
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM- 137
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
+ V ++G A+A+++ ++E SAK+ + V E+F T + +
Sbjct: 138 ------------ETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
Query: 183 KKKK 186
K
Sbjct: 185 DSNK 188
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 131 bits (333), Expect = 3e-39
Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 16/181 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
KL+++GD GK+CLL+ F+ D + E Y+ T+ + + IE+D K ++L +WDTAGQE
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT- 135
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
++ V + A + +LE SAK+ V + F T +
Sbjct: 136 -----------KKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGP 183
Query: 185 K 185
Sbjct: 184 G 184
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 132 bits (333), Expect = 5e-39
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 16/182 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++GD GK+ LL F+K++F T+ E +E++ K+++ +WDTAGQE
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Y + Y L+ + I S EN W E++ + NV + L+GNK DL +
Sbjct: 75 YRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAH- 132
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
V EE + AQ+ N + E SA + E V + FE Q K
Sbjct: 133 -----------LRAVPTEESKTFAQE-NQLLFTETSALNSENVDKAFEELINTIYQKVSK 180
Query: 185 KK 186
+
Sbjct: 181 HQ 182
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 131 bits (331), Expect = 7e-39
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 26/187 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
KL+++G+ GK+CLL+ FS D + Y+ T+ F+ + +E+D K V+L +WDTAGQ
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK--IKTVELDGKTVKLQIWDTAGQ 67
Query: 64 EDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
E R R ++ Y + I++ + + +S + + W E+ + V +LVGNK
Sbjct: 68 E---RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKC 123
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
DL++ + V+ + + A N +LE SA V + F T R
Sbjct: 124 DLKD------------KRVVEYDVAKEFADA-NKMPFLETSALDSTNVEDAFLTMARQIK 170
Query: 180 QVKKKKK 186
+ ++
Sbjct: 171 ESMSQQN 177
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 128 bits (323), Expect = 9e-38
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-----------FENYVADIEVDSKQVEL 55
K + +GD GKT +L ++ +F ++ TV N +++ L
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 56 ALWDTAGQEDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNV 110
LWDTAG E R R L+ + D L+ F + + S N+ W +++ N
Sbjct: 73 QLWDTAGLE---RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENP 128
Query: 111 PIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREV 170
I+L GNK DL + Q VK EE R +A+K Y E SA + +
Sbjct: 129 DIVLCGNKSDLED------------QRAVKEEEARELAEKYG-IPYFETSAANGTNISHA 175
Query: 171 FETATRAALQVKKKK 185
E ++ ++
Sbjct: 176 IEMLLDLIMKRMERS 190
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 126 bits (319), Expect = 2e-37
Identities = 33/186 (17%), Positives = 72/186 (38%), Gaps = 25/186 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
+L ++GD GK+ L+ F + +V T E Y ++ VD + + + + AG D
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 67
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVG--NKKD 120
D ++ FS++ +S + + + ++ + + LVG ++
Sbjct: 68 -----KFSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRIS 121
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
+ V RA+ + +Y E A V VF+ + +
Sbjct: 122 ASS------------PRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169
Query: 181 VKKKKK 186
++K+++
Sbjct: 170 LRKQQQ 175
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 126 bits (319), Expect = 4e-37
Identities = 38/189 (20%), Positives = 73/189 (38%), Gaps = 23/189 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSK--DQFPEVYVPTV-FENYVADIEVDSKQVELALW--DTA 61
K+ +VG+ GK+ L+ +F+ +F + Y T E VA + + V + L+ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK----HFCPNVPIILVGN 117
G + Y + ++ F + S +S E+ + W +K + +LV N
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVAN 140
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK-SKEGVREVFETATR 176
K DL ++ V+ + + A + + SA + F +
Sbjct: 141 KTDLPP-----------QRHQVRLDMAQDWATTNTLD-FFDVSANPPGKDADAPFLSIAT 188
Query: 177 AALQVKKKK 185
+ + K
Sbjct: 189 TFYRNYEDK 197
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 126 bits (319), Expect = 6e-37
Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 37/197 (18%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSK----------QV 53
KL+ +GD GKT L ++ ++F ++ TV F + +++ +V
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKR--VVYNAQGPNGSSGKAFKV 84
Query: 54 ELALWDTAGQEDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CP 108
L LWDTAGQE R R L+ + D L+ F + S S N+ W +++ C
Sbjct: 85 HLQLWDTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCE 140
Query: 109 NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
N I+L+GNK DL + Q V + R +A K Y E SA + + V
Sbjct: 141 NPDIVLIGNKADLPD------------QREVNERQARELADKYG-IPYFETSAATGQNVE 187
Query: 169 EVFETATRAALQVKKKK 185
+ ET ++ ++
Sbjct: 188 KAVETLLDLIMKRMEQC 204
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 125 bits (315), Expect = 9e-37
Identities = 36/192 (18%), Positives = 80/192 (41%), Gaps = 23/192 (11%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTV---FENYVADIEVDSKQ---VELA 56
R KL+IVG+ GKT LL K + ++ TV +++ I++ K+ + L
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWP--IQIRDKRKRDLVLN 59
Query: 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG 116
+WD AG+E++ P + L + + + + + W +K + P+ILVG
Sbjct: 60 VWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVG 119
Query: 117 NKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVREVFE 172
D+ ++ +++ + + + K + + + + + ++ +
Sbjct: 120 THLDV---------SDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRK 170
Query: 173 TATRAALQVKKK 184
T +L K +
Sbjct: 171 TIINESLNFKIR 182
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 122 bits (309), Expect = 9e-36
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 31/182 (17%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
K++++GD GKTCL F +FP+ T+ F +++D +++++ LWDTAGQ
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERA--VDIDGERIKIQLWDTAGQ 79
Query: 64 EDYDRLR----PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGN 117
E R R Y + ++ + + + S ++P W E K ++P ILVGN
Sbjct: 80 E---RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGN 135
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK---EGVREVFETA 174
K DLR+ V + + A + E SAK+ + V +F T
Sbjct: 136 KCDLRS------------AIQVPTDLAQKFADTHS-MPLFETSAKNPNDNDHVEAIFMTL 182
Query: 175 TR 176
Sbjct: 183 AH 184
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 120 bits (303), Expect = 4e-35
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSKQVELALWDTAGQ 63
KLV++G+ A GK+ +++ F + F E PT+ F + ++ V+ +WDTAGQ
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQR--VTINEHTVKFEIWDTAGQ 62
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
E + L P Y + L+ + + P S W E+ ++ I LVGNK D
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXL 121
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
+ + V EEG +A++ + E SAK+ E V +VF
Sbjct: 122 QEGG---------ERKVAREEGEKLAEEKGLL-FFETSAKTGENVNDVFLGIGEK 166
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 115 bits (289), Expect = 1e-32
Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 54/212 (25%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---------------------------- 38
K V++G+ + GK+ +++ +KD F E T+
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 39 ----------FENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS 88
N + + ++ +WDTAGQE Y + PL Y ++ F I +
Sbjct: 69 NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 89 PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA 148
++L+ + W ++K N IILV NK D + V E + A
Sbjct: 129 SNTLDRA-KTWVNQLKIS-SNYIIILVANKIDKN-------------KFQVDILEVQKYA 173
Query: 149 QKINAFAYLECSAKSKEGVREVFETATRAALQ 180
Q N +++ SAK+ ++ +F +
Sbjct: 174 QDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYK 204
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 119 bits (300), Expect = 5e-32
Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 26/189 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPT---------VFENYVADIEVDSKQVELAL 57
K+ ++GDG GKT LL + F T + + + K+
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 58 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN 117
WD GQE + V ++ + + W ++ + P+I+V N
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGGKSPVIVVMN 158
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
K D ++ ++ I + S K+ +GV + ++ A
Sbjct: 159 KIDENP------------SYNIEQKKINERFPAIENR-FHRISCKNGDGVESIAKSLKSA 205
Query: 178 ALQVKKKKK 186
L
Sbjct: 206 VLHPDSIYG 214
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 76.2 bits (187), Expect = 3e-17
Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 31/181 (17%)
Query: 17 GKTCLLIV-----FSKDQFPEVYVPTVFENY----VADIEVDSKQVELALWDTAGQEDY- 66
C + + F DQ + + T + Y A ++++ D G E
Sbjct: 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDF 151
Query: 67 -DRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 122
+ P D L+ + + ++ + + PI++V K D
Sbjct: 152 EQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
+ ++ A+++K +E SA+S V F T + +
Sbjct: 212 V------------ERYIRDAHTFALSKK--NLQVVETSARSNVNVDLAFSTLVQ---LID 254
Query: 183 K 183
K
Sbjct: 255 K 255
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 75.2 bits (185), Expect = 3e-17
Identities = 47/212 (22%), Positives = 70/212 (33%), Gaps = 44/212 (20%)
Query: 1 MAAIRK-------KLVIVGDGACGKTCLL----------IVFSKDQFPEVYVPTVFENY- 42
M+ I K+V G G GKT L T+F ++
Sbjct: 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFL 62
Query: 43 -VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS--------PDSLE 93
+ EV + L+ GQ Y+ R L D I+ F DS +S+
Sbjct: 63 PLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIV--FVADSAPNRLRANAESMR 120
Query: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153
N+ E +VPI++ NK+DL + + E RA+
Sbjct: 121 NMRENLAEYGLTLD-DVPIVIQVNKRDLPD--------------ALPVEMVRAVVDPEGK 165
Query: 154 FAYLECSAKSKEGVREVFETATRAALQVKKKK 185
F LE A +GV E + +R L
Sbjct: 166 FPVLEAVATEGKGVFETLKEVSRLVLARVAGG 197
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 66.5 bits (163), Expect = 4e-14
Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 52/200 (26%)
Query: 7 KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
K++IVG D A GKT +L FS ++ PT+ N +E + +WD GQ
Sbjct: 18 KVIIVGLDNA-GKTTILYQFSMNEVVHT-SPTIGSN----VEEIVINNTRFLMWDIGGQ- 70
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
+ LR Y +T+ ++ +DS D E I +++ ++
Sbjct: 71 --ESLRSSWNTYYTNTEFVI--VVVDSTD-RERISVTREELYKMLAHEDLR----KAGLL 121
Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
+ NK+D++ I + L +K C A + EG+
Sbjct: 122 IFANKQDVKECMTVAEISQFLKLTSIKDHQWH---------------IQACCALTGEGLC 166
Query: 169 EVFETATRAALQVKKKKKGR 188
+ E ++K + +
Sbjct: 167 QGLEWMMS---RLKIRLEHH 183
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 66.1 bits (162), Expect = 5e-14
Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 49/184 (26%)
Query: 7 KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
K++IVG D A GKT +L FS ++ PT+ N +E + +WD GQ
Sbjct: 23 KVIIVGLDNA-GKTTILYQFSMNEVVHT-SPTIGSN----VEEIVINNTRFLMWDIGGQ- 75
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
+ LR Y +T+ ++ +DS D E I +++ ++
Sbjct: 76 --ESLRSSWNTYYTNTEFVI--VVVDSTD-RERISVTREELYKMLAHEDLR----KAGLL 126
Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
+ NK+D++ I + L +K C A + EG+
Sbjct: 127 IFANKQDVKECMTVAEISQFLKLTSIKDHQWH---------------IQACCALTGEGLC 171
Query: 169 EVFE 172
+ E
Sbjct: 172 QGLE 175
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 65.0 bits (159), Expect = 1e-13
Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 52/197 (26%)
Query: 7 KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
+++I+G DGA GKT +L + PT+ N +E + K ++L +WD GQ
Sbjct: 20 RILILGLDGA-GKTTILYRLQIGEVVTT-KPTIGFN----VETLSYKNLKLNVWDLGGQ- 72
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
+RP Y DT ++ F +DS D + + E++ + ++
Sbjct: 73 --TSIRPYWRCYYADTAAVI--FVVDSTD-KDRMSTASKELHLMLQEEELQ----DAALL 123
Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
+ NK+D + + + L ++K ++ + SA EG+
Sbjct: 124 VFANKQDQPGALSASEVSKELNLVELKDRS---------------WSIVASSAIKGEGIT 168
Query: 169 EVFETATRAALQVKKKK 185
E + +K+++
Sbjct: 169 EGLDWLID---VIKEEQ 182
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 64.6 bits (158), Expect = 2e-13
Identities = 38/199 (19%), Positives = 79/199 (39%), Gaps = 52/199 (26%)
Query: 7 KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
+++++G D A GKT +L VPTV N +E + K + +WD GQ
Sbjct: 24 RVLMLGLDNA-GKTSILYRLHLGDVVTT-VPTVGVN----LETLQYKNISFEVWDLGGQ- 76
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
+RP + DTD ++ + +DS D + + E++ ++
Sbjct: 77 --TGVRPYWRCYFSDTDAVI--YVVDSTD-RDRMGVAKHELYALLDEDELR----KSLLL 127
Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
+ NK+DL + I E ++ + + ++ S+K+ +G+
Sbjct: 128 IFANKQDLPDAASEAEIAEQLGVSSIMNRT---------------WTIVKSSSKTGDGLV 172
Query: 169 EVFETATRAALQVKKKKKG 187
E + +++++ G
Sbjct: 173 EGMDWLVE---RLREQGLG 188
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 64.1 bits (157), Expect = 2e-13
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 52/197 (26%)
Query: 7 KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
++++VG D A GKT +L + +PT+ N +E V+ K + +WD GQ
Sbjct: 2 RILMVGLDAA-GKTTILYKLKLGEIVTT-IPTIGFN----VETVEYKNISFTVWDVGGQ- 54
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
D++RPL + +T ++ F +DS D E + E E++ + ++
Sbjct: 55 --DKIRPLWRHYFQNTQGLI--FVVDSND-RERVNEAREELMRMLAEDELR----DAVLL 105
Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
+ NK+DL N + I + L+ ++ + A S +G+
Sbjct: 106 VFANKQDLPNAMNAAEITDKLGLHSLRHRN---------------WYIQATCATSGDGLY 150
Query: 169 EVFETATRAALQVKKKK 185
E + + Q++ +K
Sbjct: 151 EGLDWLSN---QLRNQK 164
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 64.1 bits (157), Expect = 2e-13
Identities = 39/197 (19%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 7 KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
+++I+G DGA GKT +L + +PT+ N +E V K ++ +WD G
Sbjct: 9 RILILGLDGA-GKTTILYRLQVGEVVTT-IPTIGFN----VETVTYKNLKFQVWDLGGL- 61
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
+RP Y +TD ++ + +DS D + I + E++ ++
Sbjct: 62 --TSIRPYWRCYYSNTDAVI--YVVDSCD-RDRIGISKSELVAMLEEEELR----KAILV 112
Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
+ NK+D+ + + L +K + + SA G+
Sbjct: 113 VFANKQDMEQAMTSSEMANSLGLPALKD---------------RKWQIFKTSATKGTGLD 157
Query: 169 EVFETATRAALQVKKKK 185
E E +K ++
Sbjct: 158 EAMEWLVE---TLKSRQ 171
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 64.2 bits (157), Expect = 3e-13
Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 31/181 (17%)
Query: 7 KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
KLV +G D A GKT LL + D+ + VPT+ E + + +D G
Sbjct: 27 KLVFLGLDNA-GKTTLLHMLKDDRLGQH-VPTLHPT----SEELTIAGMTFTTFDLGGH- 79
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
+ R + P + I+ F +D D E + E + NVPI+
Sbjct: 80 --IQARRVWKNYLPAINGIV--FLVDCAD-HERLLESKEELDSLMTDETIA----NVPIL 130
Query: 114 LVGNKKDLRN--DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
++GNK D ++E+ + + CS ++G E F
Sbjct: 131 ILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190
Query: 172 E 172
Sbjct: 191 R 191
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 63.1 bits (154), Expect = 6e-13
Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 50/198 (25%)
Query: 7 KLVIVG-DGACGKTCLLIVF-SKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQ 63
++ +G D + GKT ++ + + +PT+ + IE S + ++D +GQ
Sbjct: 23 HVLCLGLDNS-GKTTIINKLKPSNAQSQNILPTIGFS----IEKFKSSSLSFTVFDMSGQ 77
Query: 64 EDYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPI 112
R R L Y + I+ F IDS D + P++KH +PI
Sbjct: 78 ---GRYRNLWEHYYKEGQAII--FVIDSSD-RLRMVVAKEELDTLLNHPDIKH--RRIPI 129
Query: 113 ILVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGV 167
+ NK DLR+ + + L +K +P + A EG+
Sbjct: 130 LFFANKMDLRDAVTSVKVSQLLCLENIKDKP---------------WHICASDAIKGEGL 174
Query: 168 REVFETATRAALQVKKKK 185
+E + Q++ K
Sbjct: 175 QEGVDWLQD---QIQTVK 189
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 63.0 bits (154), Expect = 8e-13
Identities = 40/184 (21%), Positives = 66/184 (35%), Gaps = 42/184 (22%)
Query: 7 KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
KL+ +G D A GKT LL + D+ + PT E + ++ +D G
Sbjct: 25 KLLFLGLDNA-GKTTLLHMLKNDRLATL-QPTWHPT----SEELAIGNIKFTTFDLGGH- 77
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
+ R L +P+ + I+ F +D+ D E E E+K +VP +
Sbjct: 78 --IQARRLWKDYFPEVNGIV--FLVDAAD-PERFDEARVELDALFNIAELK----DVPFV 128
Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
++GNK D N ++ L + CS + G
Sbjct: 129 ILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFM--------CSVVMRNGYL 180
Query: 169 EVFE 172
E F+
Sbjct: 181 EAFQ 184
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 62.6 bits (153), Expect = 1e-12
Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 49/184 (26%)
Query: 7 KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
+L+++G D A GKT +L F+ + + PT+ N I+ ++ + +L +WD GQ
Sbjct: 20 RLLMLGLDNA-GKTTILKKFNGEDVDTI-SPTLGFN----IKTLEHRGFKLNIWDVGGQ- 72
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
LR + TD ++ + +DS D + + + + ++
Sbjct: 73 --KSLRSYWRNYFESTDGLI--WVVDSAD-RQRMQDCQRELQSLLVEERLA----GATLL 123
Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
+ NK+DL N I+E L+ ++ + CSA + E +
Sbjct: 124 IFANKQDLPGALSCNAIQEALELDSIRSHHWR---------------IQGCSAVTGEDLL 168
Query: 169 EVFE 172
+
Sbjct: 169 PGID 172
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 62.2 bits (152), Expect = 1e-12
Identities = 41/196 (20%), Positives = 74/196 (37%), Gaps = 49/196 (25%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQED 65
+L +VG GKT + V + QF E +PTV N + + V + LWD GQ
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN----MRKITKGNVTIKLWDIGGQ-- 77
Query: 66 YDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPIIL 114
R R + I+ + +D+ D E I P+++ +P+++
Sbjct: 78 -PRFRSMWERYCRGVSAIV--YMVDAAD-QEKIEASKNELHNLLDKPQLQ----GIPVLV 129
Query: 115 VGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
+GNK+DL D + E L+ ++ + + S K K+ +
Sbjct: 130 LGNKRDLPGALDEKELIEKMNLSAIQDREI----------CCYS-----ISCKEKDNIDI 174
Query: 170 VFETATRAALQVKKKK 185
+ K ++
Sbjct: 175 TLQ---WLIQHSKSRR 187
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 62.2 bits (152), Expect = 1e-12
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 52/198 (26%)
Query: 7 KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
+++++G D A GKT LL + + + PT N I+ V S+ +L +WD GQ
Sbjct: 18 RILLLGLDNA-GKTTLLKQLASEDISHI-TPTQGFN----IKSVQSQGFKLNVWDIGGQ- 70
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
++RP + +TD+++ + IDS D + E ++ VP++
Sbjct: 71 --RKIRPYWRSYFENTDILI--YVIDSAD-RKRFEETGQELTELLEEEKLS----CVPVL 121
Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
+ NK+DL + I E L+ ++ + CSA + EGV+
Sbjct: 122 IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQ---------------IQSCSALTGEGVQ 166
Query: 169 EVFETATRAALQVKKKKK 186
+ + V KKK
Sbjct: 167 DGMNWVCK---NVNAKKK 181
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 61.9 bits (151), Expect = 2e-12
Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 49/184 (26%)
Query: 7 KLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQE 64
++++VG D A GKT +L + +PT+ N +E V+ K + +WD GQ
Sbjct: 31 RILMVGLDAA-GKTTILYKLKLGEIVTT-IPTIGFN----VETVEYKNICFTVWDVGGQ- 83
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPII 113
D++RPL + +T ++ F +DS D E + E E++ + ++
Sbjct: 84 --DKIRPLWRHYFQNTQGLI--FVVDSND-RERVQESADELQKMLQEDELR----DAVLL 134
Query: 114 LVGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
+ NK+D+ N + + + L ++ A G+
Sbjct: 135 VFANKQDMPNAMPVSELTDKLGLQHLRSRTWY---------------VQATCATQGTGLY 179
Query: 169 EVFE 172
+ +
Sbjct: 180 DGLD 183
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 61.5 bits (149), Expect = 8e-12
Identities = 27/144 (18%), Positives = 61/144 (42%), Gaps = 12/144 (8%)
Query: 4 IRKKLVIVGDGACGKTCLL-IVFSKDQFPEV--YVPTVFENYVADIEVDSKQVELALWDT 60
+ KL+++G GK+ + I+FS + T+ + + + L LWD
Sbjct: 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVE-HSHLRFLGN-MTLNLWDC 59
Query: 61 AGQEDY-----DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPII 113
GQ+ + + + + V++ F ++S + L++I K +++ + P+ I
Sbjct: 60 GGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIF 119
Query: 114 LVGNKKDLRNDPNTIKELNKMKQE 137
++ +K DL + M +
Sbjct: 120 VLLHKMDLVQLDKREELFQIMMKN 143
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 55.5 bits (134), Expect = 5e-10
Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 33/154 (21%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
+ ++I G GKT LL + + D V + D + L D G
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPL----SAADYDGSGVTLVDFPGHV 102
Query: 65 DYDRLRPL-------SYPDTDVILMCFSIDSPDSLENIPEK--------WTPEVKHFCPN 109
+LR ++ F +DS + + E
Sbjct: 103 ---KLRYKLSDYLKTRAKFVKGLI--FMVDSTVDPKKLTTTAEFLVDILSITESSCEN-G 156
Query: 110 VPIILVGNKKDLRN--DPNTIK-----ELNKMKQ 136
+ I++ NK +L P+ IK E+ K+ +
Sbjct: 157 IDILIACNKSELFTARPPSKIKDALESEIQKVIE 190
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 54.4 bits (131), Expect = 1e-09
Identities = 24/144 (16%), Positives = 56/144 (38%), Gaps = 28/144 (19%)
Query: 5 RKKLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DSKQVELALWDTAG 62
++ ++ VG + GKT L + Q+ + ++ ++ A +V +++ L L D G
Sbjct: 7 QRAVLFVGLCDS-GKTLLFVRLLTGQYRDT-QTSITDS-SAIYKVNNNRGNSLTLIDLPG 63
Query: 63 QEDYDRLRPLS----YPDTDVILMCFSIDSPDSLENIPEKW---------TPEVKHFCPN 109
E LR ++ F +DS + + + +K+ +
Sbjct: 64 HE---SLRFQLLDRFKSSARAVV--FVVDSAAFQREVKDVAEFLYQVLIDSMALKN---S 115
Query: 110 VPIILVGNKKDLRN--DPNTIKEL 131
+++ NK+D+ I++
Sbjct: 116 PSLLIACNKQDIAMAKSAKLIQQQ 139
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 54.0 bits (130), Expect = 2e-09
Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 33/154 (21%)
Query: 5 RKKLVIVG-DGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
+ ++I G + GKT LL + + D V + D + L D G
Sbjct: 12 QPSIIIAGPQNS-GKTSLLTLLTTDSVRPT-VVSQEPL----SAADYDGSGVTLVDFPGH 65
Query: 64 EDYDRLRPL-------SYPDTDVILMCFSIDSPDSLENIPEKW-------TPEVKHFCPN 109
+LR ++ F +DS + + +
Sbjct: 66 V---KLRYKLSDYLKTRAKFVKGLI--FMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120
Query: 110 VPIILVGNKKDLRN--DPNTIK-----ELNKMKQ 136
+ I++ NK +L P+ IK E+ K+ +
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIE 154
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 53.8 bits (129), Expect = 2e-09
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 16/145 (11%)
Query: 5 RKKLVIVGDGACGKTCLL-IVFSKDQFPEV--YVPTVFENYVADIEVDSKQVELALWDTA 61
+ +++++G GK+ + +VF K E T DI S V +WD
Sbjct: 20 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIY-KDDISNSSF-VNFQIWDFP 77
Query: 62 GQEDYDRL---RPLSYPDTDVILMCFSIDSPDSLENIPEK---WTPEVKHFCPNVPIILV 115
GQ D+ + + T ++ + ID+ D + + P++ +
Sbjct: 78 GQMDFFDPTFDYEMIFRGTGALI--YVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135
Query: 116 GNKKDLRND---PNTIKELNKMKQE 137
+K D +D T +++++ +
Sbjct: 136 IHKVDGLSDDHKIETQRDIHQRAND 160
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 54.1 bits (130), Expect = 4e-09
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 50/196 (25%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQED 65
++++VG A GKT +L + +PT+ N +E V+ K + +WD GQ
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN----VETVEYKNISFTVWDVGGQ-- 219
Query: 66 YDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPIIL 114
D++RPL + +T ++ F +DS D E + E E++ + +++
Sbjct: 220 -DKIRPLWRHYFQNTQGLI--FVVDSND-RERVNEAREELMRMLAEDELR----DAVLLV 271
Query: 115 VGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
NK+DL N + I + L+ ++ A S +G+ E
Sbjct: 272 FANKQDLPNAMNAAEITDKLGLHSLRHRNWY---------------IQATCATSGDGLYE 316
Query: 170 VFETATRAALQVKKKK 185
+ + Q++ +K
Sbjct: 317 GLDWLSN---QLRNQK 329
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 2e-08
Identities = 31/211 (14%), Positives = 53/211 (25%), Gaps = 78/211 (36%)
Query: 1 MAAIRKKL---------VIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSK 51
+R+ L +I G GKT + + +V +V K
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--------DV---------CLSYKVQCK 179
Query: 52 QVELALWDTAGQ--EDYDRLRPLSYPDTDVILMCFSIDS-----PDSLENIP---EKWTP 101
W L L + + ID D NI
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQ-------KLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 102 EVKHFC-----PNVPIIL--VGNKKDL-------------RN-------DPNTIKELN-K 133
E++ N ++L V N K R T ++
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 134 MKQEPVKPEEGRAMAQKINAFA-YLECSAKS 163
+ P+E +++ YL+C +
Sbjct: 293 HHSMTLTPDEVKSL------LLKYLDCRPQD 317
Score = 43.3 bits (101), Expect = 2e-05
Identities = 31/210 (14%), Positives = 61/210 (29%), Gaps = 61/210 (29%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENY--------------VADIEVDSKQVELALWDTAGQ 63
+ CLL++ V + + V D + ++L
Sbjct: 244 ENCLLVL---L---NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL------ 291
Query: 64 EDYDRLRPLSYPDT-DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
L+ + ++L D +P EV P + ++ + +R
Sbjct: 292 --DHHSMTLTPDEVKSLLLKYLDCRPQD----LP----REVLTTNPRR-LSIIA--ESIR 338
Query: 123 NDPNTI---KELNKMKQEPV--------KPEEGRAMAQKINAF--------AYLEC--SA 161
+ T K +N K + +P E R M +++ F L
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 162 KSKEGVREVFETATRAALQVKKKKKGRCRL 191
K V V + +L K+ K+ +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 49.5 bits (118), Expect = 2e-07
Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 47/183 (25%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-VDSKQVELALWDTAGQED 65
+++++G A GKT +L Q +PTV N +E V K V+ +WD GQ
Sbjct: 324 RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN----VETVTYKNVKFNVWDVGGQ-- 376
Query: 66 YDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPIIL 114
D++RPL Y T ++ F +D D + I E E++ + I++
Sbjct: 377 -DKIRPLWRHYYTGTQGLI--FVVDCAD-RDRIDEARQELHRIINDREMR----DAIILI 428
Query: 115 VGNKKDLRN--DPNTIKE---LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
NK+DL + P+ I+E L +++ A S +G+ E
Sbjct: 429 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWY---------------VQPSCATSGDGLYE 473
Query: 170 VFE 172
Sbjct: 474 GLT 476
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 41.9 bits (98), Expect = 5e-05
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 13/109 (11%)
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
+D+ + +++ I + P + F + PI+LVGNK DL
Sbjct: 59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFI------PGLPRFAADNPILLVGNKADLLP 112
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
+L + + A + SA G+ +V E
Sbjct: 113 RSVKYPKLLRWMRR-------MAEELGLCPVDVCLVSAAKGIGMAKVME 154
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 40.2 bits (95), Expect = 2e-04
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 18/92 (19%)
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQE 137
D+IL D + E+K P + V NK D + + +
Sbjct: 314 DLILYLL--DLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIA---- 367
Query: 138 PVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
+ SA + +G+
Sbjct: 368 ------------DGTGTEVIGISALNGDGIDT 387
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 39.7 bits (92), Expect = 3e-04
Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 19/128 (14%)
Query: 8 LVIVGDGACGKTCLL-IVFSKDQFPEVYV--PTVFENYVADIEVD--SKQVELALWDTAG 62
++++G CGK+ + +VF Q + T + ++ S ++LA+ + G
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTS------NPSLEHFSTLIDLAVMELPG 55
Query: 63 QEDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKH---FCPNVPIILVG 116
Q +Y S + ++ + IDS D N +++ P++ I ++
Sbjct: 56 QLNYFEPSYDSERLFKSVGALV--YVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLI 113
Query: 117 NKKDLRND 124
+K D ++
Sbjct: 114 HKVDGLSE 121
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 39.6 bits (92), Expect = 3e-04
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 20/126 (15%)
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
+D+ R+ +++ I + P + F N ++LVGNK DL
Sbjct: 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGSWL------PGLHRFVGNNKVLLVGNKADLI 109
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
++ + A + SA +G+ E+ + ++
Sbjct: 110 PKSVKHDKVKHWMRY-------SAKQLGLKPEDVFLISAAKGQGIAELAD-------AIE 155
Query: 183 KKKKGR 188
+ G+
Sbjct: 156 YYRGGK 161
>3evp_A Circular-permutated green fluorescent protein; EGFP, chromophore,
luminescence, photoprotein, signaling protein; HET: CRO;
1.45A {Aequorea victoria}
Length = 243
Score = 38.5 bits (89), Expect = 5e-04
Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153
NI + H+ N PI G+ L D + + +K+ ++P + + + +
Sbjct: 26 NIEDGGVQLAYHYQQNTPI---GDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLE---- 78
Query: 154 FAYLECSAKSKEGVREVFETATRAALQVKKKK 185
+A G+ E+++ T ++ K ++
Sbjct: 79 ---FVTAAGITLGMDELYKGGTGGSMVSKGEE 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 37.9 bits (89), Expect = 6e-04
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 23/91 (25%)
Query: 78 DVILMCFSIDSPDSLENIPEK-WTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQ 136
D +L F +D + P + W + +PI +V NK D+ + + E
Sbjct: 85 DRVL--FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSE------ 136
Query: 137 EPVKPEEGRAMAQKINAFAYLECSAKSKEGV 167
+N A + SA++ EGV
Sbjct: 137 --------------VNGHALIRLSARTGEGV 153
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 37.3 bits (87), Expect = 0.002
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 28/122 (22%)
Query: 59 DTAGQEDYDRLRPL-------SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP 111
DT G +D L L + D + DS + + K +P
Sbjct: 89 DTPGLDDVGELGRLRVEKARRVFYRADCGI--LVTDSAPTPYE--DDVVNLFKEM--EIP 142
Query: 112 IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
++V NK D+ + K EE + + + L SA K+G ++
Sbjct: 143 FVVVVNKIDVLGE---------------KAEELKGLYESRYEAKVLLVSALQKKGFDDIG 187
Query: 172 ET 173
+T
Sbjct: 188 KT 189
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 35.5 bits (83), Expect = 0.007
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 31/108 (28%)
Query: 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPE-------VKHFCPNVPIILVGNKKDLRNDP 125
+ D + ++ + TPE +K VPI+LVGNK D P
Sbjct: 83 ALADVNAVVWVVDLR---------HPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP 133
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
+ A + + SA + V E+
Sbjct: 134 EEAMK---------------AYHELLPEAEPRMLSALDERQVAELKAD 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.010
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 24/104 (23%)
Query: 59 DTAGQEDYD--RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVP- 111
D G+ +Y + P + S ++L+ + E+ NV
Sbjct: 1800 DELGRSNYGMIAINPGR--------VAASFSQ-EALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 112 --IILVGNKKDLRNDPNTIKELNKMK------QEPVKPEEGRAM 147
+ G+ + L N + + K Q+ + EE
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 34.8 bits (81), Expect = 0.014
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 23/92 (25%)
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQE 137
D++L+ D+ + E+ + P+ILV NK DL
Sbjct: 305 DLVLLTI--DAATGWTTGDQ----EIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENIT 358
Query: 138 PVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
+ + +A K+G+
Sbjct: 359 QI-----------------VHTAAAQKQGIDS 373
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 33.6 bits (78), Expect = 0.029
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 28/108 (25%)
Query: 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC------PNVPIILVGNKKDLRNDPN 126
S + DVIL E W P + N P+I+V NK D
Sbjct: 89 SLEEADVILFMIDAT---------EGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAK 139
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFA-YLECSAKSKEGVREVFET 173
+ L + +K + SA + E+ +T
Sbjct: 140 NVLPLID------------EIHKKHPELTEIVPISALKGANLDELVKT 175
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 33.7 bits (78), Expect = 0.030
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 22/92 (23%)
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQE 137
D++L D+ L+ ++ N ++V NK D+ N + NK+ +
Sbjct: 325 DIVLFVL--DASSPLDEEDR----KILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTD 378
Query: 138 PVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
++ SA EG+ +
Sbjct: 379 R----------------HMVKISALKGEGLEK 394
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 33.2 bits (76), Expect = 0.036
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 109 NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
N I++ NK D N + + + ++ + + + S + GV
Sbjct: 142 NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN--------PIKFSSFSTLTGVGVE 193
Query: 169 EVFETATRAALQVKKKKK 186
+ TA + +
Sbjct: 194 QAKITACELLKNDQAESI 211
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 32.5 bits (74), Expect = 0.059
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 102 EVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161
EV ++P ++V NK D+ D IK L K +E ++ SA
Sbjct: 273 EVHGEFKDLPFLVVINKIDVA-DEENIKRLEKFVKEKGLN--------------PIKISA 317
Query: 162 KSKEGVREVFETATRAALQVKKKKK 186
G+ V E + + +K
Sbjct: 318 LKGTGIDLVKEEIIKTLRPLAEKVA 342
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 31.5 bits (72), Expect = 0.13
Identities = 10/89 (11%), Positives = 32/89 (35%), Gaps = 17/89 (19%)
Query: 101 PEVKHFCPNVPIILVGNKKDLRNDPNTIKE-LNKMKQEPVKPEEGRAMAQKINAFAYLEC 159
P ++ N P I++ NK D D ++ + + ++ L
Sbjct: 42 PMIEDILKNKPRIMLLNKADK-ADAAVTQQWKEHFENQGIRS---------------LSI 85
Query: 160 SAKSKEGVREVFETATRAALQVKKKKKGR 188
++ + +G+ ++ + + + + +
Sbjct: 86 NSVNGQGLNQIVPASKEILQEKFDRMRAK 114
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 30.7 bits (70), Expect = 0.16
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 109 NVPIILVGNKKDLRN-DPNTIKELNKMKQEPVKPEE--GRAMAQKINAFAYLECSAKSKE 165
NVPII+ NK D +P+ + ++ + + PEE G + + + SAK+KE
Sbjct: 107 NVPIIVAINKMDKPEANPDRVM--QELMEYNLVPEEWGGDTI--------FCKLSAKTKE 156
Query: 166 GVREVFET 173
G+ + E
Sbjct: 157 GLDHLLEM 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 30.6 bits (70), Expect = 0.29
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
Query: 109 NVPIILVGNKKDLRN-DPNTIKELNKMKQEPVKPEE--GRAMAQKINAFAYLECSAKSKE 165
VP+++ NK D DP+ +K N++ Q + PEE G + + SAK+
Sbjct: 103 QVPVVVAVNKIDKPEADPDRVK--NELSQYGILPEEWGGESQFVHV--------SAKAGT 152
Query: 166 GVREVFET 173
G+ E+ +
Sbjct: 153 GIDELLDA 160
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 30.1 bits (69), Expect = 0.35
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 27/103 (26%)
Query: 76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRNDPNTIKE 130
D ++++ F ++ +WTP+ + P+IL NK D + +
Sbjct: 88 DVELVI--FVVE--------GTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLP 137
Query: 131 LNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
+ +A ++N + SA++ V +
Sbjct: 138 HLQ------------FLASQMNFLDIVPISAETGLNVDTIAAI 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 29.1 bits (66), Expect = 0.92
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 107 CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEG 166
PI++ NK D + + K+L+ +++ + I SA +
Sbjct: 290 VSGKPILVTLNKIDKI-NGDLYKKLDLVEKLSKELYSPIFDVIPI--------SALKRTN 340
Query: 167 VREVFET 173
+ + +
Sbjct: 341 LELLRDK 347
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 29.1 bits (66), Expect = 1.0
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 109 NVPIILVGNKKDLRN-DPNTIKELNKMKQEPVKPEE--GRAMAQKINAFAYLECSAKSKE 165
+VPI+L NK D DP +K ++ V E+ G A + SA + E
Sbjct: 104 HVPIVLAINKCDKAEADPEKVK--KELLAYDVVCEDYGGDVQAVHV--------SALTGE 153
Query: 166 GVREVFET 173
+ + E
Sbjct: 154 NMMALAEA 161
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase,
deubiquitinating enzyme, cysteine protease, enzyme
specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Length = 235
Score = 28.5 bits (63), Expect = 1.1
Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 16/137 (11%)
Query: 36 PTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 95
P VF N+ + + ++ ++ + + L L P ++L F I+
Sbjct: 15 PEVFTNFAHKLGLKNEWAYFDIYSL---TEPELLAFLPRPVKAIVL-LFPINEDRKSSTS 70
Query: 96 PEKWTPE--------VKHFCPNVPII-LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146
+ + VK+ C I+ + N + L + + K + + +
Sbjct: 71 QQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQSDTSSSKNR-- 128
Query: 147 MAQKINAFAYLECSAKS 163
+ ++ K
Sbjct: 129 -FDDVTTDQFVLNVIKE 144
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 28.2 bits (64), Expect = 1.5
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEV 33
M K+ ++G G G + + ++ E+
Sbjct: 1 MNKHVNKVALIGAGFVGSSYAFALINQGITDEL 33
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 1.5
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 12/67 (17%)
Query: 115 VGNKKDLRNDPNTIKE--------LNKM-KQEPVKPEEGRAMAQK-INAFA--YLECSAK 162
+ L +P +I++ L ++ V +E R A+K + + E K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 163 SKEGVRE 169
+K R
Sbjct: 134 NKINNRI 140
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 28.2 bits (64), Expect = 1.6
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEV 33
M R K+ I+G G G + + + E+
Sbjct: 3 MVKSRSKVAIIGAGFVGASAAFTMALRQTANEL 35
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.8 bits (61), Expect = 2.4
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 8 LVIVGDGACGKTCLL-IVFSKDQFPEVYVP----TVFENYVADIEVDSKQVELALWDTAG 62
++ VG+ GK+ L+ +F+ E ++ D++ + +++L + T G
Sbjct: 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104
Query: 63 QED 65
D
Sbjct: 105 FGD 107
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 27.5 bits (62), Expect = 2.5
Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 41/102 (40%)
Query: 5 RKKLVIVGDGACGKTCL--------LIVFSKDQFP------------------EVYVPTV 38
K+VIVG+G G + V K+ P ++ ++
Sbjct: 8 GSKVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL 67
Query: 39 --FENY---------VADIEVDSKQVELALWDTAGQEDYDRL 69
+ I+ K V G+ YD L
Sbjct: 68 DWYRKRGIEIRLAEEAKLIDRGRKVVITE----KGEVPYDTL 105
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST
genomics, protein structure initiative, PSI; 2.20A
{Staphylococcus aureus subsp} PDB: 2p76_A
Length = 287
Score = 26.9 bits (60), Expect = 3.7
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLR 122
+ + L + V++ F S +SL+ ++ +VP++ LV + +
Sbjct: 158 KKHHLLNNNKLKNGHVMIQSF---SDESLK--------KIHRQNKHVPLVKLVDKGELQQ 206
Query: 123 NDPNTIKELNK 133
+ +KE+
Sbjct: 207 FNDQRLKEIRS 217
>3tl2_A Malate dehydrogenase; center for structural genomics of
infectious diseases, csgid dehydrogenase,
oxidoreductase, citric acid cycle; 1.70A {Bacillus
anthracis}
Length = 315
Score = 27.1 bits (61), Expect = 3.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 1 MAAIRKKLVIVGDGACGKTC 20
M RKK+ ++G G G T
Sbjct: 4 MTIKRKKVSVIGAGFTGATT 23
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 26.8 bits (60), Expect = 4.5
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 24/109 (22%)
Query: 43 VADIEVDSKQVELALWD--------------------TAGQEDYDRLRPLSYPDTDVILM 82
V DIE + E+ W + L + + DV
Sbjct: 128 VEDIEF--LEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNENDVWEA 185
Query: 83 CFSIDSPDSLENIPEKWTPEVKHFCPNV--PIILVGNKKDLRNDPNTIK 129
++ P+ + V P+++ NK D +D +
Sbjct: 186 MHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKR 234
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 26.9 bits (59), Expect = 4.6
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 43 VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD--SLENIPEKWT 100
+ + D + V + D GQ R + + I+ ++ D +E+ E
Sbjct: 157 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 216
Query: 101 PEVK---------HFCPNVPIILVGNKKDL 121
E K + N +IL NKKDL
Sbjct: 217 EESKALFRTIITYPWFQNSSVILFLNKKDL 246
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 26.7 bits (60), Expect = 4.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 1 MAAIRKKLVIVGDGACGKTC 20
+ RKK+ ++G G G T
Sbjct: 5 LVQRRKKVAMIGSGMIGGTM 24
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 26.8 bits (60), Expect = 4.9
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEV 33
K+ +VG G G C L + +K +
Sbjct: 14 VNKITVVGGGELGIACTLAISAKGIADRL 42
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 26.7 bits (60), Expect = 5.0
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 142 EEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
+ A+AQ I A L A + R AA +
Sbjct: 195 DTAIAIAQTIARQAPLGVQA-TLRNARLAVREGDAAAEE 232
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 26.5 bits (59), Expect = 5.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEV 33
K+ +VG A G + V KD EV
Sbjct: 21 YNKITVVGCDAVGMADAISVLMKDLADEV 49
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 26.4 bits (59), Expect = 6.3
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 11/64 (17%)
Query: 109 NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVR 168
++ I+ K DL D +T + + I + S+K ++ +
Sbjct: 117 DIQPIICITKMDLIEDQDTEDTIQAYA----------EDYRNIG-YDVYLTSSKDQDSLA 165
Query: 169 EVFE 172
++
Sbjct: 166 DIIP 169
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 26.3 bits (59), Expect = 6.4
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEV 33
++V++G G G + + + ++ E+
Sbjct: 2 KNNGGARVVVIGAGFVGASYVFALMNQGIADEI 34
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 26.3 bits (59), Expect = 6.4
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEV 33
+K+++VGDGA G + + + E+
Sbjct: 5 TDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEI 37
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor
complex, fragment-based LEAD genera inhibitors; HET:
52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A*
4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A*
4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A*
1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Length = 331
Score = 26.3 bits (59), Expect = 6.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEV 33
+ K+ +VG GA G C + + KD E+
Sbjct: 19 QNKITVVGVGAVGMACAISILMKDLADEL 47
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 26.3 bits (59), Expect = 7.0
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 1 MAAI-RKKLVIVGDGACGKTCLLIVFSKDQFPEV 33
M K+V++G+GA G + + ++ E+
Sbjct: 1 MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDEL 34
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 26.3 bits (57), Expect = 7.0
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 43/165 (26%)
Query: 8 LVIVGDGACGKTCLL-IVFSKDQFPEVYVPTVFEN---------YVADIEVDSKQVELAL 57
L++VG+ GK+ L+ +F D +PE + E +IE ++ L +
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80
Query: 58 WDTAGQEDY-------------------------DRLRPLSYPDTDVILMCFSID-SPDS 91
DT G D L D V + I
Sbjct: 81 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG 140
Query: 92 LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQ 136
L+ + + +K V I+ V K D T+KE ++K+
Sbjct: 141 LKPLDVAF---MKAIHNKVNIVPVIAKADTL----TLKERERLKK 178
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding,
hydrolase; 3.00A {Sphingomonas}
Length = 424
Score = 26.1 bits (58), Expect = 7.6
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 127 TIKELNKMKQEPVKPEE-GRAMAQKINAFA 155
L+ +E E A IN FA
Sbjct: 323 ANDTLDAFLREGPTDAELQAAKDNLINGFA 352
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 26.0 bits (58), Expect = 7.7
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 142 EEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKKGRCRLL 192
R +A I A + + T AL + + +
Sbjct: 185 TAARRVAASIVGNNQKAVRA-LLDSYHRIDALQTGGALWAEAEAARQWMRS 234
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 25.7 bits (57), Expect = 8.4
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 109 NVPIILVGNKKD-LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGV 167
++P I+ NK D ++N I L + + P+ + ++ SAK + +
Sbjct: 122 DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKV----------FIPISAKFGDNI 171
Query: 168 REVFE 172
+
Sbjct: 172 ERLKN 176
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 25.9 bits (58), Expect = 8.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEV 33
+K+V+VGDGA G + + + E
Sbjct: 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEF 33
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A*
1uxj_A* 1uxi_A*
Length = 309
Score = 25.9 bits (58), Expect = 9.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 4 IRKKLVIVGDGACGKTC 20
+RKK+ I+G G G T
Sbjct: 1 MRKKISIIGAGFVGSTT 17
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 26.1 bits (58), Expect = 9.3
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
+R K+VI DG + + + + + +++VD + L A
Sbjct: 149 VRAKMVIAADGFESEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLGSIA 206
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 25.9 bits (58), Expect = 9.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 5 RKKLVIVGDGACGKTC 20
KL ++G GA G T
Sbjct: 7 PTKLAVIGAGAVGSTL 22
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,021,536
Number of extensions: 175401
Number of successful extensions: 1075
Number of sequences better than 10.0: 1
Number of HSP's gapped: 783
Number of HSP's successfully gapped: 176
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)