BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14755
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RLZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its High Ionic
Strength, Low Ph Crystal Form
pdb|1ROZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form
pdb|1ROZ|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form
pdb|1RQD|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form With The Inhibitor Gc7
Bound In The Active Site
pdb|1RQD|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form With The Inhibitor Gc7
Bound In The Active Site
Length = 369
Score = 133 bits (335), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 79/120 (65%), Gaps = 28/120 (23%)
Query: 26 IVPNDNYCAFENWLMPILDTMLREQKETNSFGIHAGEWLSGQETTIPQHKQTDKLKGTVW 85
+VPN+NYC FE+WLMPILD M+ EQ +G W
Sbjct: 170 LVPNENYCKFEDWLMPILDQMVMEQN----------------------------TEGVKW 201
Query: 86 TPSRIISRLGTEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQ 145
TPS++I+RLG EIN+ +S+ YWA NHIP+FSPALTDGSLGDM++FHS++NPGL+ DI++
Sbjct: 202 TPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVE 261
>pdb|1DHS|A Chain A, Crystal Structure Of The Nad Complex Of Human
Deoxyhypusine Synthase
Length = 361
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 79/120 (65%), Gaps = 28/120 (23%)
Query: 26 IVPNDNYCAFENWLMPILDTMLREQKETNSFGIHAGEWLSGQETTIPQHKQTDKLKGTVW 85
+VPN+NYC FE+WLMPILD M+ EQ +G W
Sbjct: 162 LVPNENYCKFEDWLMPILDQMVMEQN----------------------------TEGVKW 193
Query: 86 TPSRIISRLGTEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQ 145
TPS++I+RLG EIN+ +S+ YWA NHIP+FSPALTDGSLGDM++FHS++NPGL+ DI++
Sbjct: 194 TPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVE 253
>pdb|4HZ6|A Chain A, Crystal Structure Of Bglb
pdb|4HZ7|A Chain A, Crystal Structure Of Bglb With Glucose
pdb|4HZ8|A Chain A, Crystal Structure Of Bglb With Natural Substrate
Length = 444
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 16/107 (14%)
Query: 90 IISRLGTEI-----NHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDIL 144
+++ LG +I ++E + WA + H+ +F+P L D +LG + H + G
Sbjct: 149 LVAALGDQIPLWVTHNEPMVTVWAGY-HMGLFAPGLKDPTLGGRVAHHLLLSHGQALQAF 207
Query: 145 Q---------GTSMSFIHITPMTMVPYP-KINKTFHDLNSDVILSGL 181
+ G +++F I P++ P + + H +++ L L
Sbjct: 208 RALSPAGSQMGITLNFNTIYPVSAEPADVEAARRMHSFQNELFLEPL 254
>pdb|3CMJ|A Chain A, Crystal Structure Of Engineered Beta-Glucosidase From Soil
Metagenome
Length = 465
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 16/107 (14%)
Query: 90 IISRLGTEI-----NHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDIL 144
+++ LG +I ++E + WA + H+ +F+P L D +LG + H + G
Sbjct: 170 LVAALGDQIPLWVTHNEPMVTVWAGY-HMGLFAPGLKDPTLGGRVAHHLLLSHGQALQAF 228
Query: 145 Q---------GTSMSFIHITPMTMVPYP-KINKTFHDLNSDVILSGL 181
+ G +++F I P++ P + + H +++ L L
Sbjct: 229 RALSPAGSQMGITLNFNTIYPVSAEPADVEAARRMHSFQNELFLEPL 275
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 119 ALTDGSLGDMMYFHSFRNPGLICDILQGTSMSFIHI 154
L G D++Y H F PGL IL S +I+I
Sbjct: 390 GLELGLPADLIYRHPFPGPGLAIRILGEVSAEYINI 425
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,693,810
Number of Sequences: 62578
Number of extensions: 231188
Number of successful extensions: 500
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 5
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)