RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14755
         (184 letters)



>1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor, spermid
           transferase; HET: NAD; 2.15A {Homo sapiens} SCOP:
           c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A*
          Length = 369

 Score = 81.5 bits (200), Expect = 9e-19
 Identities = 60/121 (49%), Positives = 79/121 (65%), Gaps = 28/121 (23%)

Query: 26  IVPNDNYCAFENWLMPILDTMLREQKETNSFGIHAGEWLSGQETTIPQHKQTDKLKGTVW 85
           +VPN+NYC FE+WLMPILD M+ EQ                              +G  W
Sbjct: 170 LVPNENYCKFEDWLMPILDQMVMEQNT----------------------------EGVKW 201

Query: 86  TPSRIISRLGTEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQ 145
           TPS++I+RLG EIN+ +S+ YWA  NHIP+FSPALTDGSLGDM++FHS++NPGL+ DI++
Sbjct: 202 TPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVE 261

Query: 146 G 146
            
Sbjct: 262 D 262


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.45
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 21/93 (22%)

Query: 69  TTIPQHKQTDKLKGTVWTPSRIISRLGTEINHEDSICYWAAHNHIPIFSPALTDGSLGDM 128
              P H  +  L         I   L      ++++ + A    IP++     DGS  D+
Sbjct: 423 VASPFH--SHLLVPAS---DLINKDLV-----KNNVSFNAKDIQIPVYDTF--DGS--DL 468

Query: 129 MYFHSFRNPGLICDILQG-------TSMSFIHI 154
                  +  ++  I++        T     HI
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501



 Score = 29.6 bits (66), Expect = 0.68
 Identities = 24/154 (15%), Positives = 41/154 (26%), Gaps = 47/154 (30%)

Query: 41  PILDTMLREQKETNSF---GIHAGEWLSGQETTIPQHKQTDKLKGTVWTPSRIISRLGTE 97
             L  ++R   +       G++  EWL                     TP          
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSN----------------TPD--------- 227

Query: 98  INHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFR----NPGLICDILQGTSMSFIH 153
              +D   Y      IPI  P +    L    Y  + +     PG +   L+G +     
Sbjct: 228 ---KD---YLL---SIPISCPLIGVIQLAH--YVVTAKLLGFTPGELRSYLKGATGHSQG 276

Query: 154 ITPMTMVPYPKINKTFHDLNSDVI----LSGLRS 183
           +     +      ++F       I      G+R 
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.4 bits (57), Expect = 7.4
 Identities = 16/126 (12%), Positives = 33/126 (26%), Gaps = 48/126 (38%)

Query: 1   MTILLTSMISPKKTLPIIVEIEVSKIVP----------NDNYCAFENWLMPILDTMLR-- 48
            ++LL  +    + LP     EV    P           D    ++NW     D +    
Sbjct: 304 KSLLLKYLDCRPQDLPR----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 49  ----------EQKET-NSFGIHAGEWLSGQETTIPQHKQTDKLKGTVWTPSRIISRLGTE 97
                     E ++  +   +             P              P+ ++S +  +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSV------------FPPS---------AHIPTILLSLIWFD 398

Query: 98  INHEDS 103
           +   D 
Sbjct: 399 VIKSDV 404


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,811,116
Number of extensions: 154932
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 9
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)