RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14755
         (184 letters)



>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 361

 Score = 98.4 bits (245), Expect = 2e-25
 Identities = 60/121 (49%), Positives = 79/121 (65%), Gaps = 28/121 (23%)

Query: 26  IVPNDNYCAFENWLMPILDTMLREQKETNSFGIHAGEWLSGQETTIPQHKQTDKLKGTVW 85
           +VPN+NYC FE+WLMPILD M+ EQ                              +G  W
Sbjct: 162 LVPNENYCKFEDWLMPILDQMVMEQNT----------------------------EGVKW 193

Query: 86  TPSRIISRLGTEINHEDSICYWAAHNHIPIFSPALTDGSLGDMMYFHSFRNPGLICDILQ 145
           TPS++I+RLG EIN+ +S+ YWA  NHIP+FSPALTDGSLGDM++FHS++NPGL+ DI++
Sbjct: 194 TPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVE 253

Query: 146 G 146
            
Sbjct: 254 D 254


>d1wb1a2 b.43.3.1 (A:390-468) Elongation factor SelB, domains 2 and
           4 {Methanococcus maripaludis [TaxId: 39152]}
          Length = 79

 Score = 26.8 bits (59), Expect = 0.53
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 60  AGEWLSGQETTIPQHKQTDKLKGTVWTPSRIISRLGTEINHEDSI 104
           A E L G+E +I       K+KGT  T   + +     + + D +
Sbjct: 26  AAEKLIGEEISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKV 70


>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1
           {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
          Length = 435

 Score = 25.4 bits (54), Expect = 5.7
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 2/88 (2%)

Query: 68  ETTIPQHKQTDKLKGTVWTPSRIISRLGTEINHEDSICYWAAHNHIPIFSPALTDGSLGD 127
           E    +  +T   KG +   +  +  L      + +         +   +       LG 
Sbjct: 291 EINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQ 350

Query: 128 MMYFHSFRNPGLICDILQGTSMSFIHIT 155
                +  N     +   GTSM+  H++
Sbjct: 351 STTVSNQGNQDY--EYYNGTSMATPHVS 376


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0397    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 701,998
Number of extensions: 30786
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 5
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)