BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14756
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IF1|A Chain A, Human Translation Initiation Factor Eif1, Nmr, 29
Structures
Length = 126
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/107 (70%), Positives = 90/107 (84%), Gaps = 6/107 (5%)
Query: 15 TLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 70
+ DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+
Sbjct: 22 SFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKK 79
Query: 71 FACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L + GLAK +QLKVHGF
Sbjct: 80 FACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126
>pdb|2OGH|A Chain A, Solution Structure Of Yeast Eif1
Length = 108
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 80/105 (76%), Gaps = 4/105 (3%)
Query: 14 KTLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 73
K+ DPFAD G ++ +HIRIQQRNGRKTLTTVQG+ EYDLK+I++ KK+FAC
Sbjct: 7 KSFDPFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFAC 64
Query: 74 NGTVIEHPEYGEVLQLQGDQRENICQWL-TKTGLAKPEQLKVHGF 117
NG +++ PE GE++QLQGDQR +C+++ ++ GL K + +K+HGF
Sbjct: 65 NGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQK-KNIKIHGF 108
>pdb|2XZM|F Chain F, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|F Chain F, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 101
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 23 FKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPE 82
F+ + DD Q +HIR++QR GRK TTV+G+ E+D +KI++ KK +CN T++E E
Sbjct: 8 FENNIDDFQTH-IHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVEEDE 66
Query: 83 YGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHG 116
+V++L GD R I Q+L++ G+A + + +HG
Sbjct: 67 GKKVIKLNGDHRNQIQQFLSEEGIAAVDNITIHG 100
>pdb|2BZN|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|E Chain E, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|F Chain F, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|G Chain G, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|H Chain H, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2C6Q|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|E Chain E, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|F Chain F, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|G Chain G, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|H Chain H, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
Length = 351
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 41 QRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 100
+R+G+K G+SSE +KK + A G +E P G+V D I
Sbjct: 267 ERDGKK-YKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRST 325
Query: 101 LTKTGLAKPEQLK 113
T G AK ++L
Sbjct: 326 CTYVGAAKLKELS 338
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 50 TVQGLSSEYDLKKIVRACKKEF---ACNGT--VIEHPEYGEVLQLQ---GDQRENICQWL 101
T Q +S E ++ +I+RA + EF A +G V+ + E E ++ + D EN+C W+
Sbjct: 218 TEQLVSPEPEVYEILRAEEDEFIILAXDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWV 277
Query: 102 TKTGLAK 108
T L K
Sbjct: 278 VDTCLHK 284
>pdb|2A7R|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
Length = 366
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 41 QRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 100
+R+G+K G+SSE +KK + A G +E P G+V D I
Sbjct: 275 ERDGKK-YKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRST 333
Query: 101 LTKTGLAKPEQL 112
T G AK ++L
Sbjct: 334 CTYVGAAKLKEL 345
>pdb|2F3O|A Chain A, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
pdb|2F3O|B Chain B, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
Length = 776
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 47 TLTTVQG-LSSEYDLKKIVRACKKEFA----CNGTVIEHPEYG 84
+L ++G L++ Y + IV AC+K F + +++ P+YG
Sbjct: 551 SLVAIEGALNAGYSMDDIVEACRKNFVGYEKLHKLLLQSPKYG 593
>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen
Length = 529
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 8 LVGRCQKTLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLK 61
++G C + P F S++ ++ L IR+ R GR T V S + +L+
Sbjct: 352 VIGSC---MTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLE 402
>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|C Chain C, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|E Chain E, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|G Chain G, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|A Chain A, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|C Chain C, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|E Chain E, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|G Chain G, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|A Chain A, Structure Of Integrin Alphax Beta2
pdb|3K72|C Chain C, Structure Of Integrin Alphax Beta2
Length = 1095
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 16 LDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQ----GLSSEYDLKKIVRACKKEF 71
L F A G +D QDGLV + + R L T G+S ++ +I R+ F
Sbjct: 562 LQYFGQALSGGQDLTQDGLVDLAVGARGQVLLLRTRPVLWVGVSMQFIPAEIPRSA---F 618
Query: 72 ACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103
C V+ Q + NIC ++ K
Sbjct: 619 ECREQVVSE---------QTLVQSNICLYIDK 641
>pdb|3KF8|A Chain A, Crystal Structure Of C. Tropicalis Stn1-Ten1 Complex
pdb|3KF8|C Chain C, Crystal Structure Of C. Tropicalis Stn1-Ten1 Complex
Length = 220
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 59 DLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAK 108
D K VR +++F G ++ YG++++L+G+ I W ++K
Sbjct: 123 DSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGE----IYNWYDSINVSK 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,640,045
Number of Sequences: 62578
Number of extensions: 133022
Number of successful extensions: 224
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 12
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)