BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14756
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42678|SUI1_ANOGA Protein translation factor SUI1 homolog OS=Anopheles gambiae
GN=AGAP006459 PE=3 SV=1
Length = 110
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/103 (93%), Positives = 100/103 (97%)
Query: 15 TLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 74
T DPFADA KG++ DVQDGLVHIRIQQRNGRKTLTTVQGLS+EYDLKKIVRACKKEFACN
Sbjct: 8 TFDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACN 67
Query: 75 GTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
GTVIEHPEYGEVLQLQGDQRENICQWLTK+GLAKPEQLKVHGF
Sbjct: 68 GTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110
>sp|Q9VZS3|SUI1_DROME Protein translation factor SUI1 homolog OS=Drosophila melanogaster
GN=CG17737 PE=1 SV=1
Length = 110
Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 94/103 (91%), Positives = 100/103 (97%)
Query: 15 TLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 74
T DPFADA KG++DD+QDGLVHIRIQQRNGRKTLTTVQGLS+EYDLKKIVR+CKKEFACN
Sbjct: 8 TRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACN 67
Query: 75 GTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
GTVIEHPEYGEVLQLQGDQRENICQWLTK GLAKP+QLKVHGF
Sbjct: 68 GTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110
>sp|Q5RFF4|EIF1_PONAB Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1
PE=3 SV=1
Length = 113
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/107 (70%), Positives = 90/107 (84%), Gaps = 6/107 (5%)
Query: 15 TLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 70
+ DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+
Sbjct: 9 SFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKK 66
Query: 71 FACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L + GLAK +QLKVHGF
Sbjct: 67 FACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
>sp|P41567|EIF1_HUMAN Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1
PE=1 SV=1
Length = 113
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/107 (70%), Positives = 90/107 (84%), Gaps = 6/107 (5%)
Query: 15 TLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 70
+ DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+
Sbjct: 9 SFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKK 66
Query: 71 FACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L + GLAK +QLKVHGF
Sbjct: 67 FACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
>sp|Q5E938|EIF1_BOVIN Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1
PE=3 SV=1
Length = 113
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/107 (70%), Positives = 90/107 (84%), Gaps = 6/107 (5%)
Query: 15 TLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 70
+ DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+
Sbjct: 9 SFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKK 66
Query: 71 FACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L + GLAK +QLKVHGF
Sbjct: 67 FACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
>sp|P48024|EIF1_MOUSE Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1
PE=2 SV=2
Length = 113
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/107 (70%), Positives = 90/107 (84%), Gaps = 6/107 (5%)
Query: 15 TLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 70
+ DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+
Sbjct: 9 SFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKK 66
Query: 71 FACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L + GLAK +QLKVHGF
Sbjct: 67 FACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113
>sp|P61220|EIF1B_PIG Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B
PE=3 SV=1
Length = 113
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 90/108 (83%), Gaps = 6/108 (5%)
Query: 14 KTLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 69
++ DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK
Sbjct: 8 QSFDPFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKK 65
Query: 70 EFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L + G+ K EQLKVHGF
Sbjct: 66 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
>sp|Q9CXU9|EIF1B_MOUSE Eukaryotic translation initiation factor 1b OS=Mus musculus
GN=Eif1b PE=2 SV=2
Length = 113
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 90/108 (83%), Gaps = 6/108 (5%)
Query: 14 KTLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 69
++ DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK
Sbjct: 8 QSFDPFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKK 65
Query: 70 EFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L + G+ K EQLKVHGF
Sbjct: 66 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
>sp|Q4R4X9|EIF1B_MACFA Eukaryotic translation initiation factor 1b OS=Macaca fascicularis
GN=EIF1B PE=3 SV=1
Length = 113
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 90/108 (83%), Gaps = 6/108 (5%)
Query: 14 KTLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 69
++ DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK
Sbjct: 8 QSFDPFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKK 65
Query: 70 EFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L + G+ K EQLKVHGF
Sbjct: 66 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
>sp|O60739|EIF1B_HUMAN Eukaryotic translation initiation factor 1b OS=Homo sapiens
GN=EIF1B PE=1 SV=2
Length = 113
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 90/108 (83%), Gaps = 6/108 (5%)
Query: 14 KTLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 69
++ DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK
Sbjct: 8 QSFDPFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKK 65
Query: 70 EFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L + G+ K EQLKVHGF
Sbjct: 66 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
>sp|P32911|SUI1_YEAST Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUI1 PE=1
SV=1
Length = 108
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 80/105 (76%), Gaps = 4/105 (3%)
Query: 14 KTLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 73
K+ DPFAD G ++ +HIRIQQRNGRKTLTTVQG+ EYDLK+I++ KK+FAC
Sbjct: 7 KSFDPFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFAC 64
Query: 74 NGTVIEHPEYGEVLQLQGDQRENICQWL-TKTGLAKPEQLKVHGF 117
NG +++ PE GE++QLQGDQR +C+++ ++ GL K + +K+HGF
Sbjct: 65 NGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQK-KNIKIHGF 108
>sp|Q0D5W6|SUI1_ORYSJ Protein translation factor SUI1 homolog OS=Oryza sativa subsp.
japonica GN=GOS2 PE=3 SV=1
Length = 115
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 73/105 (69%), Gaps = 2/105 (1%)
Query: 15 TLDPFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFA 72
DPFA+A G VH+RIQQRNGRK+LTTVQGL E+ KI++ KKEF
Sbjct: 11 AFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFC 70
Query: 73 CNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
CNGTV++ PE G+V+QLQGDQR+N+ +L + G+ K E +K+HGF
Sbjct: 71 CNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog OS=Oryza sativa subsp.
indica GN=GOS2 PE=2 SV=1
Length = 115
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 73/105 (69%), Gaps = 2/105 (1%)
Query: 15 TLDPFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFA 72
DPFA+A G VH+RIQQRNGRK+LTTVQGL E+ KI++ KKEF
Sbjct: 11 AFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFC 70
Query: 73 CNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
CNGTV++ PE G+V+QLQGDQR+N+ +L + G+ K E +K+HGF
Sbjct: 71 CNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>sp|P56330|SUI1_MAIZE Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3
SV=1
Length = 115
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 73/105 (69%), Gaps = 2/105 (1%)
Query: 15 TLDPFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFA 72
DPFA+A G VH+RIQQRNGRK+LTTVQGL E+ KI++ KKEF
Sbjct: 11 AFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFC 70
Query: 73 CNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
CNGTV++ PE G+V+QLQGDQR+N+ +L + G+ K E +K+HGF
Sbjct: 71 CNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>sp|O48650|SUI1_SALBA Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1
Length = 113
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 72/103 (69%)
Query: 15 TLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 74
DPFA+A VH+R+QQRNGRK+LTTVQGL +Y KI++ KKEF CN
Sbjct: 11 AFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCN 70
Query: 75 GTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
GTV++ PE G+V+QLQGDQR+N+ +L + G+ K E +K+HGF
Sbjct: 71 GTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113
>sp|Q94JV4|SUI12_ARATH Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana
GN=At1g54290 PE=3 SV=1
Length = 113
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 71/103 (68%)
Query: 15 TLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 74
DPFADA VHIR+QQRNGRK+LTTVQGL EY KI++ KKEF CN
Sbjct: 11 AFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCN 70
Query: 75 GTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
GTV++ E G+V+QLQGDQR+N+ +L + GL K + +K+HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>sp|Q9SM41|SUI1_SPOST Protein translation factor SUI1 homolog OS=Sporobolus stapfianus
PE=3 SV=1
Length = 115
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 73/105 (69%), Gaps = 2/105 (1%)
Query: 15 TLDPFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFA 72
DPF++A G VH+RIQQRNGRK+LTTVQGL E+ KI++ KKEF
Sbjct: 11 AFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFC 70
Query: 73 CNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
CNGTV++ PE G+V+QLQGDQR+N+ +L + G+ K E +K+HGF
Sbjct: 71 CNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>sp|P41568|SUI11_ARATH Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana
GN=At4g27130 PE=3 SV=2
Length = 113
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 71/103 (68%)
Query: 15 TLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 74
DPFADA VHIR+QQRNGRK+LTTVQGL EY KI++ KKEF CN
Sbjct: 11 AFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCN 70
Query: 75 GTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
GTV++ E G+V+QLQGDQR+N+ +L + GL K + +K+HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>sp|P51971|EIF1_CHICK Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus
gallus GN=EIF1 PE=3 SV=1
Length = 79
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 73/79 (92%)
Query: 39 IQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENIC 98
IQQRNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIEHPEYGEV+QLQGDQR+NIC
Sbjct: 1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNIC 60
Query: 99 QWLTKTGLAKPEQLKVHGF 117
Q+L + GLAK +QLKVHGF
Sbjct: 61 QFLVEIGLAKDDQLKVHGF 79
>sp|Q755R1|SUI1_ASHGO Protein translation factor SUI1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SUI1A
PE=3 SV=1
Length = 108
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 78/105 (74%), Gaps = 4/105 (3%)
Query: 14 KTLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 73
K+ DPFAD G ++ +HIRIQQRNGRKTLTTVQG+ EYDLK+I++ +K+F C
Sbjct: 7 KSFDPFADT--GDDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGC 64
Query: 74 NGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQ-LKVHGF 117
NG +++ E GE++QLQGDQR +C++L T LA P++ +K+HGF
Sbjct: 65 NGNMVKDDEMGEIIQLQGDQRAKVCEFLI-TQLAIPKKNIKIHGF 108
>sp|Q9SQF4|SUI1_BRAOL Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3
SV=1
Length = 113
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 71/103 (68%)
Query: 15 TLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 74
DPFADA VHIR+QQRNGRK+LTTVQGL EY KI++ KKEF CN
Sbjct: 11 AFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCN 70
Query: 75 GTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
GTV++ E G+V+QLQGDQR+N+ +L + GL K + +++HGF
Sbjct: 71 GTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113
>sp|P79060|SUI1_SCHPO Protein translation factor sui1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sui1 PE=3 SV=3
Length = 109
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 78/104 (75%), Gaps = 4/104 (3%)
Query: 15 TLDPFADAFKGSEDDVQD-GLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 73
T+DPFAD +DD Q +HIRIQQRNGRKTLTTVQGL E+D K+I+RA KK+FAC
Sbjct: 9 TVDPFADT---GDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFAC 65
Query: 74 NGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
NGT+++ + GEV+QLQGDQR + ++LT+ + + +K+HGF
Sbjct: 66 NGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109
>sp|O82569|SUI1_PIMBR Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa
PE=3 SV=1
Length = 113
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 68/103 (66%)
Query: 15 TLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 74
+ DPFA+A VHIRIQQRNGRK+LTTVQGL E KI++ KK CN
Sbjct: 11 SFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCN 70
Query: 75 GTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
GTV+ E G+V+QLQGDQR+N+ ++ + G+ K +Q+KVH F
Sbjct: 71 GTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113
>sp|Q5UQD7|SUI1_MIMIV Protein translation factor SUI1 homolog OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R464 PE=3 SV=1
Length = 106
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 17 DPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGT 76
DPF D G + + +HI+ +QR K++T ++ + + DLK ++ K F C+G+
Sbjct: 8 DPFND---GLDTEQHFEKIHIKTKQRTKTKSITIIENIPEKIDLKLFLKKLKYTFHCSGS 64
Query: 77 VIE-HPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
+ + + + + +QL GD RE + +L K + K + +HG+
Sbjct: 65 IQQNYDDDSKFIQLSGDHRELVKNFLIKNSIVKESNIVMHGY 106
>sp|Q1E556|DENR_COCIM Translation machinery-associated protein 22 OS=Coccidioides immitis
(strain RS) GN=TMA22 PE=3 SV=1
Length = 200
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 35 VHIRIQQRNGRKTLTTVQGLSSE-YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
V I+ +RN RK +T + GL + D KK+ + K+FA +V ++P GE + +QGD
Sbjct: 106 VQIKRVERNKRKHVTVIAGLEAHGLDNKKVAKELGKKFATGSSVTKNPAGGEEITVQGDV 165
Query: 94 RENICQWLTK 103
E++ +WL +
Sbjct: 166 CEDVLEWLVE 175
>sp|Q975S0|SUI1_SULTO Protein translation factor SUI1 homolog OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_03500 PE=3 SV=1
Length = 100
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 31 QDGLVHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQL 89
++ + I++++R K +T ++GLS S+ +LKKI K + A GTV + G++ +L
Sbjct: 20 EEQFIKIKVEKRRYGKEVTIIEGLSGSDVELKKIASELKSKLAAGGTV----KNGKI-EL 74
Query: 90 QGDQRENICQWLTKTG 105
QGD RE + + L K G
Sbjct: 75 QGDHRERVKELLMKMG 90
>sp|A4YIU6|SUI1_METS5 Protein translation factor SUI1 homolog OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=Msed_2210 PE=3 SV=1
Length = 99
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 31 QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQ 90
++ + I++++R K +T ++GL + DLKKI K + A GTV + G + ++Q
Sbjct: 20 EEQFIKIKLEKRRYGKEVTVIEGLGDDADLKKIASELKSKLAAGGTV----KNGRI-EIQ 74
Query: 91 GDQRENICQWLTKTGL 106
GD RE L K G
Sbjct: 75 GDHRERARDLLVKLGF 90
>sp|B8GDE2|SUI1_METPE Protein translation factor SUI1 homolog OS=Methanosphaerula
palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
GN=Mpal_1990 PE=3 SV=1
Length = 101
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 35 VHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
+++ + +R K +T + GL S+ DL+++ + K + AC GTV G ++LQGD
Sbjct: 28 INVNVNRRRYGKEVTVIDGLDPSDIDLQELTKFLKGKLACGGTV-----KGSSIELQGDH 82
Query: 94 RENICQWLTKTGLA 107
R+ + + LTK G +
Sbjct: 83 RDRVKELLTKKGYS 96
>sp|Q4JAE7|SUI1_SULAC Protein translation factor SUI1 homolog OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_0865 PE=3 SV=1
Length = 99
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 31 QDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQL 89
++ + I++++R K +T V+G+S+ E +LKKI K + A GTV + G++ +L
Sbjct: 19 EEQFIKIKVEKRRYGKEVTIVEGISNDETELKKIASELKSKLAAGGTV----KNGKI-EL 73
Query: 90 QGDQRENICQWLTKTGLAKPEQLKVH 115
QGD R+ + + L K G + L +
Sbjct: 74 QGDHRDRVKELLIKMGFPESNILVIE 99
>sp|Q2H5Z7|DENR_CHAGB Translation machinery-associated protein 22 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=TMA22 PE=3 SV=1
Length = 188
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 28 DDVQDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEV 86
D + +V I+ +RN RK +T+V GL + +LKK+ + K+FA +V + P GE
Sbjct: 89 DKLAKSVVTIKRIERNKRKFVTSVTGLEAFGLELKKVAKDFGKKFATGASVTKVPSGGEE 148
Query: 87 LQLQGDQRENICQWL 101
+ +QGD I ++L
Sbjct: 149 IVVQGDVSGEIEEFL 163
>sp|Q97BW9|SUI1_THEVO Protein translation factor SUI1 homolog OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0336 PE=3 SV=1
Length = 100
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 35 VHIRIQQRNGRKTLTTVQGLSSEY-DLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
V I + +R K +T ++G+ + D++KI + KK+ A GTV E G +++LQGD
Sbjct: 26 VKIVVDKRRYGKFVTIIEGIDPKIEDIEKIAKELKKKVASGGTVKE----GRIIELQGDH 81
Query: 94 RENICQWLTKTGL 106
R+ + ++L G
Sbjct: 82 RQEVKKFLEDMGF 94
>sp|Q9P3T4|DENR_NEUCR Translation machinery-associated protein 22 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=tma-22 PE=3 SV=1
Length = 187
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 28 DDVQDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEV 86
D + +V I+ +RN RK +T+V GL + +LKK+ + K+FA +V + P GE
Sbjct: 87 DKRANSVVTIKRIERNKRKYVTSVSGLEAFGLELKKVAKDFGKKFATGSSVTKVPSGGEE 146
Query: 87 LQLQGDQRENICQWLTKTGLAKPE 110
+ +QGD I +++ + PE
Sbjct: 147 IVVQGDVSGEIEEFILEKYKEVPE 170
>sp|Q4WBL6|DENR_ASPFU Translation machinery-associated protein 22 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=tma22 PE=3 SV=2
Length = 194
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 35 VHIRIQQRNGRKTLTTVQGLSSE-YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
V I+ +RN RK +T + GL + KK+ + K+FA +V + P E + +QGD
Sbjct: 102 VQIKRVERNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDV 161
Query: 94 RENICQWL 101
E++ +WL
Sbjct: 162 SEDVKEWL 169
>sp|A1DAY1|DENR_NEOFI Translation machinery-associated protein 22 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=tma22 PE=3 SV=1
Length = 194
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 35 VHIRIQQRNGRKTLTTVQGLSSE-YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
V I+ +RN RK +T + GL + KK+ + K+FA +V + P E + +QGD
Sbjct: 102 VQIKRVERNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDV 161
Query: 94 RENICQWL 101
E++ +WL
Sbjct: 162 SEDVQEWL 169
>sp|A1C8E3|DENR_ASPCL Translation machinery-associated protein 22 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=tma22 PE=3 SV=1
Length = 194
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 35 VHIRIQQRNGRKTLTTVQGLSSE-YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
V I+ +RN RK +T + GL + KK+ + K+FA +V + P E + +QGD
Sbjct: 102 VQIKRVERNKRKHVTVITGLEVHGLENKKVAKELGKKFATGSSVTKSPAGVEEITVQGDV 161
Query: 94 RENICQWL 101
E++ +WL
Sbjct: 162 SEDVQEWL 169
>sp|A4QVI3|DENR_MAGO7 Translation machinery-associated protein 22 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=TMA22 PE=3
SV=2
Length = 201
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 28 DDVQDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEV 86
D ++ +V ++ +RN RK +T+V GL S +LKK+ + K+FA +V + GE
Sbjct: 97 DKLKKSVVTVKRIERNKRKYVTSVSGLESFGLELKKVAKDFGKKFATGSSVTKVASGGEE 156
Query: 87 LQLQGDQRENICQWLTKTGLAKPE 110
+ +QGD + I +++ + PE
Sbjct: 157 IVVQGDVSDEIKEFIVEKYKDVPE 180
>sp|Q12UF1|SUI1_METBU Protein translation factor SUI1 homolog OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_2049 PE=3 SV=1
Length = 102
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 VHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
+ +++ +R K +T V+G ++E DL ++ K +FAC GTV G ++LQG+
Sbjct: 28 ITVKVNRRRYGKEVTVVEGFDANEIDLHELSTYLKSKFACGGTV-----KGSAVELQGNH 82
Query: 94 RENICQWLTKTGLAKPEQLK 113
+ L K G + PEQ+K
Sbjct: 83 LSRMKAVLVKKGFS-PEQIK 101
>sp|Q55397|Y546_SYNY3 Uncharacterized protein sll0546 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0546 PE=3 SV=1
Length = 111
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 18 PFADAFKGSEDDVQDGLVHIRIQQ-RNGRK--TLTTVQGLS-SEYDLKKIVRACKKEFAC 73
P AD + D+ ++RIQ R+GRK T+T V GL S + +++A K
Sbjct: 17 PVADPLSEEQIDLPPQQQNVRIQATRSGRKGKTVTVVSGLQLSAMGQQALLKALKSFCGS 76
Query: 74 NGTVIEHPEYGEVLQLQGDQRENICQWLTKTG 105
GT+ E + +++QGDQRE I +L K G
Sbjct: 77 GGTLKE-----DCVEIQGDQREKILAYLLKQG 103
>sp|Q6L1B9|SUI1_PICTO Protein translation factor SUI1 homolog OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=PTO0648 PE=3 SV=1
Length = 99
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 29 DVQDGLVHIRIQQRNGRKTLTTVQGLSSEY-DLKKIVRACKKEFACNGTVIEHPEYGEVL 87
D + +V I + +R K +T ++G+ + D+ +I ++ KK+ A GTV + G+++
Sbjct: 20 DRNNEVVKISVDKRRYGKVVTLIEGIDPKVEDINEIAKSLKKKVASGGTVKD----GKII 75
Query: 88 QLQGDQRENICQWLTKTGL 106
+LQGD RE L G
Sbjct: 76 ELQGDHRETARAQLESMGF 94
>sp|Q57902|SUI1_METJA Protein translation factor SUI1 homolog OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0463 PE=3 SV=1
Length = 103
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 35 VHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
+ I + +R K +T ++G +S DLK++ + K AC GTV ++ ++LQGD
Sbjct: 28 IKIYVTKRRFGKLMTIIEGFDTSVIDLKELAKKLKDICACGGTVKDN-----TIELQGDH 82
Query: 94 RENICQWLTKTGLAK 108
R+ + + L K G ++
Sbjct: 83 RKKVAEELVKMGFSR 97
>sp|A9A389|SUI1_NITMS Protein translation factor SUI1 homolog OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0622 PE=3 SV=1
Length = 102
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 35 VHIRIQQRNGRKTLTTVQGLSSEYD-LKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
+ IR++ R +K T ++GL + + L+ + + K ++AC GT E + LQGD
Sbjct: 27 IIIRLETRRFKKKGTMIEGLDPKLNNLETVAKELKSKYACGGTAKEGYIF-----LQGDH 81
Query: 94 RENICQWLTKTGLAKPEQLKVH 115
R+ I LT G A+ E +++H
Sbjct: 82 RDTIKDTLTDLGFAE-ESIELH 102
>sp|Q9YBG9|SUI1_AERPE Protein translation factor SUI1 homolog OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1629 PE=3 SV=1
Length = 101
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 29 DVQDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVL 87
V++ ++ IR+++R + +T ++G++ E++LKK+ K A GT + G +
Sbjct: 19 SVEEQIIKIRLEKRRFGREVTIIEGINEKEFNLKKLASTLKSRLATGGTA----KNGRI- 73
Query: 88 QLQGDQRENICQWLTKTGLAKPEQ 111
+LQGD R + + L + G PE+
Sbjct: 74 ELQGDHRHRVKKILVELGF--PEE 95
>sp|B6YSM1|SUI1_THEON Protein translation factor SUI1 homolog OS=Thermococcus onnurineus
(strain NA1) GN=TON_0074 PE=3 SV=1
Length = 98
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 35 VHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
+ + I++ K T ++G+ E+DL+ I + K + AC GTV + G + +LQGD
Sbjct: 23 IRVYIEKARYGKLKTIIEGIDEKEFDLEDIAKKLKAKLACGGTV----KKGRI-ELQGDH 77
Query: 94 RENICQWLTKTGLA 107
RE + + L G +
Sbjct: 78 REKVKKLLADLGFS 91
>sp|A8AC05|SUI1_IGNH4 Protein translation factor SUI1 homolog OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=Igni_1281
PE=3 SV=1
Length = 104
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 31 QDGLVHIRIQQRNGRKTLTTVQGLSSEYD-LKKIVRACKKEFACNGTVIEHPEYGEVLQL 89
Q L+ I++++R + +T ++GL+ + + LKK+ + K + A GTV + G + +L
Sbjct: 24 QQELIKIKLEKRKWGREVTIIEGLNLDNERLKKVAKQLKSKLATGGTV----KNGRI-EL 78
Query: 90 QGDQRENICQWLTKTGLAKPEQLKVHG 116
QGD R+ + + L + G PE + + G
Sbjct: 79 QGDHRDRVKKLLEEMGYP-PENIVIVG 104
>sp|A6SIZ0|DENR_BOTFB Translation machinery-associated protein 22 OS=Botryotinia
fuckeliana (strain B05.10) GN=tma22 PE=3 SV=1
Length = 197
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 35 VHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
+ I+ +RN RK +T VQGL + +LKK+ + FA +V + G+ + +QGD
Sbjct: 103 IRIKRVERNKRKYVTEVQGLEAFGLELKKVAKEFGSRFATGSSVTKVASGGQEITVQGDV 162
Query: 94 RENICQWLTK 103
+++ ++L K
Sbjct: 163 SDDVREFLIK 172
>sp|Q2FTC8|SUI1_METHJ Protein translation factor SUI1 homolog OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=Mhun_2911 PE=3 SV=1
Length = 101
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 35 VHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
+++++ +R K +T ++GL ++ DL+ + + K + AC GTV G ++LQG+
Sbjct: 28 INVKVNKRRYGKEVTVIEGLDPTDIDLEDLSKFMKSKLACGGTV-----KGNSIELQGNH 82
Query: 94 RENICQWLTKTG 105
R+ + L G
Sbjct: 83 RDRVIDLLATKG 94
>sp|Q46F27|SUI1_METBF Protein translation factor SUI1 homolog OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=Mbar_A0534 PE=3 SV=1
Length = 102
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 VHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
+ +++ +R K +T V+G +SE DL ++ K +FAC GTV G ++LQG+
Sbjct: 28 ITVKVNRRRYGKEVTVVEGFDASEIDLHELSTYLKSKFACGGTV-----KGNTVELQGNH 82
Query: 94 RENICQWLTKTGLAKPEQLK 113
+ + L + G + EQ+K
Sbjct: 83 LARMKEVLMEKGFS-AEQIK 101
>sp|Q8TIT3|SUI1_METAC Protein translation factor SUI1 homolog OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_4059 PE=3 SV=1
Length = 102
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 VHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
+ +++ +R K +T V+G +SE DL ++ K +FAC GTV G ++LQG+
Sbjct: 28 ITVKVNRRRYGKEVTVVEGFDASEIDLHELSTYLKSKFACGGTV-----KGNTVELQGNH 82
Query: 94 RENICQWLTKTGLAKPEQLK 113
+ + L + G + EQ+K
Sbjct: 83 LARMKEVLMEKGFS-AEQIK 101
>sp|A2SQ91|SUI1_METLZ Protein translation factor SUI1 homolog OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0321 PE=3 SV=1
Length = 101
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 35 VHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
+ +++ +R K +T V GL E DL+ + + K AC GTV E+ ++LQG+
Sbjct: 28 ISVKVSKRRYGKEVTVVDGLDPYEIDLEDLSKFLKGRLACGGTVKENS-----IELQGNH 82
Query: 94 RENICQWLTKTGLA 107
R+ + LT G +
Sbjct: 83 RDRVKALLTSRGYS 96
>sp|Q8PYK3|SUI1_METMA Protein translation factor SUI1 homolog OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0858 PE=3 SV=1
Length = 102
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 VHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93
+ +++ +R K +T V+G +SE DL ++ K +FAC GTV G ++LQG+
Sbjct: 28 ITVKVNRRRYGKEVTVVEGFDASEIDLHELSTYLKSKFACGGTV-----KGNTVELQGNH 82
Query: 94 RENICQWLTKTGLAKPEQLK 113
+ + L + G + EQ+K
Sbjct: 83 LTRMKEVLMEKGFS-AEQIK 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,340,700
Number of Sequences: 539616
Number of extensions: 1662893
Number of successful extensions: 4314
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 4254
Number of HSP's gapped (non-prelim): 99
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)