Query psy14756
Match_columns 117
No_of_seqs 130 out of 844
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 19:49:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01160 SUI1_MOF2 translatio 100.0 1.2E-35 2.6E-40 209.4 11.3 103 15-117 7-110 (110)
2 KOG1770|consensus 100.0 2.3E-34 4.9E-39 200.6 10.2 105 13-117 7-112 (112)
3 COG0023 SUI1 Translation initi 100.0 3.2E-30 6.8E-35 180.1 9.5 97 12-115 7-104 (104)
4 cd00474 SUI1_eIF1 The SUI1/eIF 100.0 3.2E-28 6.8E-33 162.0 8.8 76 34-115 1-77 (77)
5 PF01253 SUI1: Translation ini 99.9 1.6E-26 3.5E-31 154.7 9.1 80 30-109 2-82 (83)
6 PRK00939 translation initiatio 99.9 4.2E-26 9.1E-31 158.2 9.1 79 29-113 20-99 (99)
7 TIGR01158 SUI1_rel translation 99.9 2.4E-24 5.2E-29 149.8 9.6 78 29-112 20-99 (101)
8 PRK07451 translation initiatio 99.9 4.1E-24 8.8E-29 151.8 10.4 95 7-106 11-108 (115)
9 PRK09019 translation initiatio 99.9 1E-23 2.2E-28 148.3 10.4 92 7-106 7-101 (108)
10 PRK06824 translation initiatio 99.9 2E-23 4.4E-28 148.8 11.1 74 29-107 37-112 (118)
11 TIGR01159 DRP1 density-regulat 99.9 1.2E-23 2.6E-28 158.4 9.3 85 29-114 85-172 (173)
12 KOG3239|consensus 99.7 7.3E-17 1.6E-21 121.7 7.9 83 32-114 100-184 (193)
13 KOG2522|consensus 99.6 1.9E-16 4E-21 133.5 6.0 105 8-113 438-549 (560)
14 PF05046 Img2: Mitochondrial l 98.4 2.1E-06 4.6E-11 58.1 8.3 67 35-106 14-87 (87)
15 KOG4034|consensus 97.0 0.0012 2.7E-08 49.5 4.5 60 43-106 105-169 (169)
16 PRK03988 translation initiatio 95.0 0.072 1.6E-06 39.0 5.4 62 32-103 30-96 (138)
17 TIGR00311 aIF-2beta translatio 94.7 0.094 2E-06 38.1 5.4 62 32-103 25-91 (133)
18 smart00653 eIF2B_5 domain pres 94.2 0.16 3.5E-06 35.7 5.6 62 34-103 8-74 (110)
19 PRK12336 translation initiatio 92.3 0.39 8.4E-06 36.9 5.4 62 32-103 26-92 (201)
20 PRK14451 acylphosphatase; Prov 92.0 0.9 1.9E-05 30.5 6.4 52 51-103 9-60 (89)
21 PRK14434 acylphosphatase; Prov 91.2 1.4 3E-05 29.8 6.7 54 50-103 7-61 (92)
22 PRK14425 acylphosphatase; Prov 90.7 1.1 2.3E-05 30.4 5.8 53 50-102 11-65 (94)
23 PRK14439 acylphosphatase; Prov 90.4 1.4 3.1E-05 33.2 6.7 55 48-103 78-132 (163)
24 PRK14450 acylphosphatase; Prov 90.3 1.8 3.8E-05 29.0 6.6 55 50-105 7-64 (91)
25 PF01873 eIF-5_eIF-2B: Domain 89.9 0.61 1.3E-05 33.5 4.2 62 31-100 18-84 (125)
26 PRK14446 acylphosphatase; Prov 89.6 1.6 3.5E-05 29.4 5.9 53 50-103 7-59 (88)
27 PRK14437 acylphosphatase; Prov 89.6 2 4.4E-05 30.1 6.6 53 50-103 28-80 (109)
28 PRK14443 acylphosphatase; Prov 89.5 1.8 4E-05 29.5 6.2 53 50-103 9-61 (93)
29 PRK14444 acylphosphatase; Prov 89.2 2.7 5.8E-05 28.3 6.8 54 49-103 8-61 (92)
30 PRK14445 acylphosphatase; Prov 88.3 2.4 5.2E-05 28.4 6.0 53 50-103 9-61 (91)
31 PRK14449 acylphosphatase; Prov 88.2 3.4 7.4E-05 27.6 6.7 53 50-103 8-60 (90)
32 PRK14452 acylphosphatase; Prov 88.1 3.5 7.6E-05 28.8 6.9 52 49-101 24-75 (107)
33 PRK14420 acylphosphatase; Prov 87.7 3.4 7.4E-05 27.5 6.5 53 50-103 7-59 (91)
34 PRK14423 acylphosphatase; Prov 87.5 3.3 7.1E-05 27.8 6.3 53 50-103 10-62 (92)
35 PRK14428 acylphosphatase; Prov 87.5 3.8 8.2E-05 28.1 6.7 53 50-103 13-65 (97)
36 PRK14436 acylphosphatase; Prov 87.2 4.1 9E-05 27.4 6.7 53 50-103 9-61 (91)
37 PRK14426 acylphosphatase; Prov 87.2 3.6 7.8E-05 27.6 6.4 53 50-103 9-61 (92)
38 PRK14433 acylphosphatase; Prov 86.4 2.9 6.3E-05 27.9 5.6 53 50-103 6-58 (87)
39 PRK14435 acylphosphatase; Prov 86.1 4.4 9.5E-05 27.2 6.3 53 50-103 7-59 (90)
40 PRK14447 acylphosphatase; Prov 85.7 3.7 8.1E-05 27.8 5.9 53 50-103 9-62 (95)
41 PRK14429 acylphosphatase; Prov 85.6 4.9 0.00011 26.9 6.4 52 50-102 7-58 (90)
42 PRK14448 acylphosphatase; Prov 85.6 6.2 0.00013 26.4 6.9 53 50-103 7-59 (90)
43 PRK14430 acylphosphatase; Prov 85.5 5.2 0.00011 27.0 6.5 52 50-102 9-60 (92)
44 PRK14441 acylphosphatase; Prov 85.3 5.2 0.00011 27.0 6.4 53 50-103 10-62 (93)
45 PRK14422 acylphosphatase; Prov 85.3 6.6 0.00014 26.5 6.9 53 50-103 11-63 (93)
46 PRK14440 acylphosphatase; Prov 85.2 3.9 8.5E-05 27.4 5.8 53 50-103 8-60 (90)
47 PRK14421 acylphosphatase; Prov 85.1 5.4 0.00012 27.4 6.5 53 50-103 9-61 (99)
48 PRK14438 acylphosphatase; Prov 85.1 5.1 0.00011 26.8 6.3 54 49-103 7-60 (91)
49 PF00708 Acylphosphatase: Acyl 84.9 5.7 0.00012 26.1 6.4 53 50-103 9-61 (91)
50 PRK14442 acylphosphatase; Prov 84.5 4.7 0.0001 27.1 5.9 53 50-103 9-61 (91)
51 PRK14432 acylphosphatase; Prov 83.1 6.1 0.00013 26.7 6.0 53 50-103 7-60 (93)
52 PRK14427 acylphosphatase; Prov 81.3 5.9 0.00013 26.8 5.4 53 50-103 11-63 (94)
53 PRK14431 acylphosphatase; Prov 81.2 9.3 0.0002 25.6 6.3 53 50-103 7-61 (89)
54 PRK14424 acylphosphatase; Prov 79.4 10 0.00022 25.7 6.1 54 49-103 11-64 (94)
55 COG1254 AcyP Acylphosphatases 72.9 19 0.00042 24.4 6.1 53 50-103 9-61 (92)
56 PF00691 OmpA: OmpA family; I 59.5 6.3 0.00014 25.5 1.5 24 93-117 55-78 (97)
57 PF11388 DotA: Phagosome traff 57.4 6 0.00013 27.6 1.2 28 50-79 3-31 (105)
58 TIGR02802 Pal_lipo peptidoglyc 48.2 11 0.00024 24.9 1.4 24 93-117 56-79 (104)
59 TIGR02433 lysidine_TilS_C tRNA 46.3 26 0.00057 19.9 2.6 23 84-106 9-32 (47)
60 PF11608 Limkain-b1: Limkain b 46.1 46 0.001 22.8 4.1 34 47-80 3-37 (90)
61 cd04885 ACT_ThrD-I Tandem C-te 43.7 31 0.00066 21.2 2.8 21 86-106 43-64 (68)
62 PF00381 PTS-HPr: PTS HPr comp 42.4 75 0.0016 20.3 4.6 38 58-103 42-79 (84)
63 PRK05412 putative nucleotide-b 40.6 69 0.0015 24.2 4.7 55 46-106 92-150 (161)
64 PRK05177 minC septum formation 39.8 65 0.0014 25.2 4.7 60 43-106 14-78 (239)
65 PRK10897 phosphohistidinoprote 39.0 1.2E+02 0.0025 20.3 5.9 38 58-103 44-81 (90)
66 PF06925 MGDG_synth: Monogalac 35.9 33 0.00071 24.7 2.3 22 95-117 146-167 (169)
67 COG1918 FeoA Fe2+ transport sy 34.6 85 0.0018 20.5 3.9 28 85-114 13-40 (75)
68 cd04906 ACT_ThrD-I_1 First of 34.5 50 0.0011 21.2 2.8 21 86-106 45-67 (85)
69 TIGR03595 Obg_CgtA_exten Obg f 33.2 44 0.00096 21.3 2.3 21 97-117 45-65 (69)
70 COG1601 GCD7 Translation initi 32.9 53 0.0011 24.4 3.0 53 47-103 42-100 (151)
71 PF09840 DUF2067: Uncharacteri 32.7 1.3E+02 0.0029 22.9 5.3 46 54-100 5-50 (190)
72 PRK09555 feoA ferrous iron tra 30.2 1E+02 0.0022 19.8 3.7 29 87-115 12-40 (74)
73 cd07185 OmpA_C-like Peptidogly 30.0 35 0.00075 22.0 1.5 23 94-117 59-81 (106)
74 PF06857 ACP: Malonate decarbo 29.0 1.8E+02 0.0038 19.6 4.8 33 82-115 25-65 (87)
75 PF08869 XisI: XisI protein; 28.8 39 0.00085 23.9 1.6 28 86-114 67-95 (111)
76 COG4465 CodY Pleiotropic trans 28.2 1E+02 0.0022 24.8 4.0 56 54-110 22-78 (261)
77 cd02394 vigilin_like_KH K homo 28.0 1.4E+02 0.0029 17.6 4.1 36 65-101 23-58 (62)
78 TIGR03350 type_VI_ompA type VI 28.0 35 0.00076 23.8 1.3 23 94-117 90-112 (137)
79 COG2080 CoxS Aerobic-type carb 27.4 56 0.0012 24.5 2.3 31 45-75 69-100 (156)
80 PRK10802 peptidoglycan-associa 26.7 37 0.0008 25.2 1.3 24 93-117 125-148 (173)
81 COG2885 OmpA Outer membrane pr 25.7 66 0.0014 23.6 2.5 58 59-117 101-162 (190)
82 PRK04021 hypothetical protein; 25.4 2.2E+02 0.0048 19.2 5.2 45 57-101 45-90 (92)
83 PF09269 DUF1967: Domain of un 24.2 58 0.0013 20.7 1.7 20 97-116 45-64 (69)
84 PHA01548 hypothetical protein 24.0 34 0.00073 25.5 0.6 19 32-50 145-163 (167)
85 PF04461 DUF520: Protein of un 23.9 1.4E+02 0.003 22.5 3.9 54 46-105 92-149 (160)
86 PF15538 Toxin_61: Putative to 23.5 44 0.00096 25.1 1.1 35 66-107 4-38 (157)
87 KOG1143|consensus 23.2 2.2E+02 0.0047 25.1 5.4 47 64-114 122-168 (591)
88 PF04739 AMPKBI: 5'-AMP-activa 23.1 1.4E+02 0.0031 20.5 3.6 21 31-51 75-95 (100)
89 PF15643 Tox-PL-2: Papain fold 22.9 86 0.0019 21.9 2.4 21 94-115 25-45 (100)
90 cd00367 PTS-HPr_like Histidine 22.5 2.1E+02 0.0045 17.9 5.6 48 47-103 28-75 (77)
91 PF04023 FeoA: FeoA domain; I 22.2 81 0.0018 19.3 2.1 28 87-115 15-42 (74)
92 PF07521 RMMBL: RNA-metabolisi 21.9 87 0.0019 17.9 2.0 20 95-116 21-40 (43)
93 cd04909 ACT_PDH-BS C-terminal 21.5 1.2E+02 0.0026 18.0 2.7 22 85-106 45-67 (69)
94 PF00013 KH_1: KH domain syndr 21.2 1.9E+02 0.0041 16.9 4.1 37 63-101 21-57 (60)
95 PF08845 SymE_toxin: Toxin Sym 20.1 82 0.0018 19.5 1.7 23 85-114 24-46 (57)
96 cd00105 KH-I K homology RNA-bi 20.1 1.9E+02 0.0042 16.6 4.8 37 63-100 21-59 (64)
No 1
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=100.00 E-value=1.2e-35 Score=209.38 Aligned_cols=103 Identities=67% Similarity=1.045 Sum_probs=94.3
Q ss_pred CCCccccccCCCCCC-CCCceEEEEEEEecCCceEEEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCch
Q psy14756 15 TLDPFADAFKGSEDD-VQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ 93 (117)
Q Consensus 15 ~f~p~~~~~~~~~~~-~~~~~I~I~~e~R~grK~VT~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~ 93 (117)
+||||++....+... .+...|+|++++|+|||.||+|+||+..+|+++|+|.||++|||||||+++++++.+|+|||||
T Consensus 7 ~~dpf~d~~~~~~~~~~~~~~I~Iri~qR~grK~VTiI~Gl~~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~ 86 (110)
T TIGR01160 7 SFDPFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQ 86 (110)
T ss_pred CCCCccccccccccccCccceEEEEEEEccCCccEEEEeccCChHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcH
Confidence 799999975444322 4677999999999999999999999988899999999999999999999988888999999999
Q ss_pred hHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 94 RENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
|++|++||.++||+++++|.+|||
T Consensus 87 re~v~~~L~~~g~~~~~~i~vhg~ 110 (110)
T TIGR01160 87 RKNVCEFLISQGLLKKDQIKIHGF 110 (110)
T ss_pred HHHHHHHHHHcCCCCHHHeeecCC
Confidence 999999999999999999999997
No 2
>KOG1770|consensus
Probab=100.00 E-value=2.3e-34 Score=200.62 Aligned_cols=105 Identities=64% Similarity=1.065 Sum_probs=98.4
Q ss_pred cCCCCccccccCCCC-CCCCCceEEEEEEEecCCceEEEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcC
Q psy14756 13 QKTLDPFADAFKGSE-DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQG 91 (117)
Q Consensus 13 ~~~f~p~~~~~~~~~-~~~~~~~I~I~~e~R~grK~VT~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQG 91 (117)
+++||||+++...++ .++....||||++||+|||++|+|+|++..+|++.+++.|||.|||+|+|.++++.|++|+|||
T Consensus 7 ~~~~dpfad~~~~~~~~~g~~~~ihIRIQQRnGrKtlTtVQgi~~Eyd~kril~~lKKef~CnGtvved~e~gevIQLqG 86 (112)
T KOG1770|consen 7 LEDFDPFADARAGEDDIAGTEKYIHIRIQQRNGRKTLTTVQGIPMEYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQG 86 (112)
T ss_pred hhhcCcccccccccccccCccceEEEEEEeeCCceEEEEecCChhhhhHHHHHHHHHHhccCCCeEecCcccCceEEecc
Confidence 349999999876633 4777779999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 92 DQRENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 92 D~~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
|+|.+|.+||...|++.+++|+||||
T Consensus 87 DqR~nv~~fl~~~g~~k~~~ikihGf 112 (112)
T KOG1770|consen 87 DQRKNVCQFLVQVGLVKKDNIKIHGF 112 (112)
T ss_pred chhhhHHHHHHHhccccccceeecCC
Confidence 99999999999999999999999998
No 3
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.2e-30 Score=180.11 Aligned_cols=97 Identities=32% Similarity=0.515 Sum_probs=86.3
Q ss_pred ccCCCCccccccCCCCCCCCCceEEEEEEEecCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCCCceEEEEc
Q psy14756 12 CQKTLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQ 90 (117)
Q Consensus 12 ~~~~f~p~~~~~~~~~~~~~~~~I~I~~e~R~grK~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQ 90 (117)
|+...+|.... ..+..+...+.|+|++++|++||.||+|+||+. ++|+++||++||++|||||||+++ +|+||
T Consensus 7 ~~~~~~p~e~~-~~~~~k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~~-----~IeiQ 80 (104)
T COG0023 7 CGRIGLPKELT-CEEVAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKDG-----EIEIQ 80 (104)
T ss_pred CCCCCCchHHh-hhhcccccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCceecCC-----EEEEe
Confidence 66667777765 122345669999999999999999999999999 999999999999999999999995 99999
Q ss_pred CchhHHHHHHHHHcCCCCCCCeEEc
Q psy14756 91 GDQRENICQWLTKTGLAKPEQLKVH 115 (117)
Q Consensus 91 GD~~~~v~~~L~~~G~~p~~~I~ih 115 (117)
||||++|.+||.++|| |+++|.+|
T Consensus 81 Gdhr~~v~~~L~~~G~-k~k~i~~~ 104 (104)
T COG0023 81 GDHRDKVKELLIKKGF-KVKNIGIE 104 (104)
T ss_pred ChHHHHHHHHHHHcCC-chhhcccC
Confidence 9999999999999999 89999876
No 4
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=99.95 E-value=3.2e-28 Score=161.99 Aligned_cols=76 Identities=57% Similarity=0.852 Sum_probs=71.9
Q ss_pred eEEEEEEEecCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCCCCCCCe
Q psy14756 34 LVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQL 112 (117)
Q Consensus 34 ~I~I~~e~R~grK~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~~p~~~I 112 (117)
.|+|++++|+|||.||+|+||+. ..|++++||.||++|||||||++ .+|+|||||+++|++||.++||. +++|
T Consensus 1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~-----~~I~lQGD~r~~v~~~L~~~g~~-~~~i 74 (77)
T cd00474 1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKD-----EVIELQGDQRKKIKEFLIKMGFA-KDNI 74 (77)
T ss_pred CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEec-----CEEEEeCcHHHHHHHHHHHcCCC-HHHe
Confidence 38999999999999999999998 77999999999999999999998 49999999999999999999994 5999
Q ss_pred EEc
Q psy14756 113 KVH 115 (117)
Q Consensus 113 ~ih 115 (117)
+||
T Consensus 75 ~i~ 77 (77)
T cd00474 75 KIH 77 (77)
T ss_pred EeC
Confidence 998
No 5
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=99.94 E-value=1.6e-26 Score=154.66 Aligned_cols=80 Identities=40% Similarity=0.674 Sum_probs=68.9
Q ss_pred CCCceEEEEEEEecCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCCCC
Q psy14756 30 VQDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAK 108 (117)
Q Consensus 30 ~~~~~I~I~~e~R~grK~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~~p 108 (117)
++.++|+|++++|+|||.||+|+||+. ++|+++|||+|+++|||||||.++++++.+|+|||||+++|.+||.++|+.|
T Consensus 2 ~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~~~~ 81 (83)
T PF01253_consen 2 KEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKGGIP 81 (83)
T ss_dssp S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHCSSE
T ss_pred CCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhCCCC
Confidence 567899999999999999999999997 9999999999999999999999987557899999999999999999999866
Q ss_pred C
Q psy14756 109 P 109 (117)
Q Consensus 109 ~ 109 (117)
+
T Consensus 82 k 82 (83)
T PF01253_consen 82 K 82 (83)
T ss_dssp -
T ss_pred C
Confidence 5
No 6
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=99.93 E-value=4.2e-26 Score=158.22 Aligned_cols=79 Identities=30% Similarity=0.596 Sum_probs=73.5
Q ss_pred CCCCceEEEEEEEecCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCCC
Q psy14756 29 DVQDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLA 107 (117)
Q Consensus 29 ~~~~~~I~I~~e~R~grK~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~~ 107 (117)
+.+.+.|+|++++|+|||+||+|+||+. ++|+++|+|.||++|||||||++ ++|+|||||+++|++||.++||
T Consensus 20 ~~~~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~-----~~I~iQGD~r~~v~~~L~~~G~- 93 (99)
T PRK00939 20 AKEQQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKD-----GRIELQGDHRERVKELLIKMGF- 93 (99)
T ss_pred CccCceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEEC-----CEEEEeCcHHHHHHHHHHHcCC-
Confidence 4556899999999999999999999997 89999999999999999999986 4799999999999999999999
Q ss_pred CCCCeE
Q psy14756 108 KPEQLK 113 (117)
Q Consensus 108 p~~~I~ 113 (117)
|.++|+
T Consensus 94 ~~~~i~ 99 (99)
T PRK00939 94 SEENIE 99 (99)
T ss_pred ChhhcC
Confidence 888874
No 7
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=99.91 E-value=2.4e-24 Score=149.79 Aligned_cols=78 Identities=32% Similarity=0.588 Sum_probs=72.1
Q ss_pred CCCCceEEEEEEEe-cCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy14756 29 DVQDGLVHIRIQQR-NGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 106 (117)
Q Consensus 29 ~~~~~~I~I~~e~R-~grK~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~ 106 (117)
+++.+.|+|++++| +|+|.||+|+||+. ..+++++||.||++||||||+++ .+|+|||||+++|.+||.++||
T Consensus 20 ~~~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~-----~~IeiQGD~~~~v~~~L~~~G~ 94 (101)
T TIGR01158 20 PKEDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKD-----GVIEIQGDHRDRVKDLLEKKGF 94 (101)
T ss_pred CCCCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeC-----CEEEEeCcHHHHHHHHHHHcCC
Confidence 56899999999999 89999999999997 88999999999999999999987 4999999999999999999999
Q ss_pred CCCCCe
Q psy14756 107 AKPEQL 112 (117)
Q Consensus 107 ~p~~~I 112 (117)
|.+++
T Consensus 95 -~~k~~ 99 (101)
T TIGR01158 95 -KVKLI 99 (101)
T ss_pred -Ceeec
Confidence 55443
No 8
>PRK07451 translation initiation factor Sui1; Validated
Probab=99.91 E-value=4.1e-24 Score=151.77 Aligned_cols=95 Identities=23% Similarity=0.306 Sum_probs=76.3
Q ss_pred cceeeccCCCCccc-cccCCCCCCCCCceEEEEEEE-ecCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCCC
Q psy14756 7 NLVGRCQKTLDPFA-DAFKGSEDDVQDGLVHIRIQQ-RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEY 83 (117)
Q Consensus 7 ~~~~~~~~~f~p~~-~~~~~~~~~~~~~~I~I~~e~-R~grK~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~~ 83 (117)
|||-|-...|.+-. ......++|++.+.|+|++++ ++++|.||+|+||+. ..|+++|+|.||++||||||++++
T Consensus 11 ~lvySt~~~~~~~~~~~~~~~~~~~~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd~--- 87 (115)
T PRK07451 11 RIVYQEFGNVDNSAALERGVPDLPPQQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKDN--- 87 (115)
T ss_pred CEEEeCCCCcccccccccccCCCCccceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcCC---
Confidence 46666444443322 222233467788999999874 456699999999998 789999999999999999999884
Q ss_pred ceEEEEcCchhHHHHHHHHHcCC
Q psy14756 84 GEVLQLQGDQRENICQWLTKTGL 106 (117)
Q Consensus 84 ~~~I~lQGD~~~~v~~~L~~~G~ 106 (117)
+|+||||||++|.+||.++||
T Consensus 88 --~IelQGD~r~~v~~~L~~~Gf 108 (115)
T PRK07451 88 --TIEIQGDHRQKILEILIKLGY 108 (115)
T ss_pred --EEEEcCcHHHHHHHHHHHCCC
Confidence 899999999999999999999
No 9
>PRK09019 translation initiation factor Sui1; Validated
Probab=99.91 E-value=1e-23 Score=148.34 Aligned_cols=92 Identities=29% Similarity=0.457 Sum_probs=76.1
Q ss_pred cceeec-cCCCCccccccCCCCCCCCCceEEEEEEEe-cCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCCC
Q psy14756 7 NLVGRC-QKTLDPFADAFKGSEDDVQDGLVHIRIQQR-NGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEY 83 (117)
Q Consensus 7 ~~~~~~-~~~f~p~~~~~~~~~~~~~~~~I~I~~e~R-~grK~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~~ 83 (117)
+||-|- +..|.|-.. ..++|++.+.|+|+++++ +++|.||+|+||+. ..|+++|||+||++|||||||+++
T Consensus 7 ~lvyst~~g~~~~~~~---~~~~~~~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~~--- 80 (108)
T PRK09019 7 RLVYSTDTGRIDEEKA---KPERPKGDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKDG--- 80 (108)
T ss_pred CEEEeCCCCccCcccc---cCcCCCcCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEcC---
Confidence 455553 445655553 233567889999998843 45679999999996 889999999999999999999984
Q ss_pred ceEEEEcCchhHHHHHHHHHcCC
Q psy14756 84 GEVLQLQGDQRENICQWLTKTGL 106 (117)
Q Consensus 84 ~~~I~lQGD~~~~v~~~L~~~G~ 106 (117)
+|+||||||++|.+||.++||
T Consensus 81 --~IelQGD~r~~v~~~L~~~Gf 101 (108)
T PRK09019 81 --VIEIQGDKRDLLKSLLEAKGM 101 (108)
T ss_pred --EEEEcCcHHHHHHHHHHHCCC
Confidence 999999999999999999999
No 10
>PRK06824 translation initiation factor Sui1; Validated
Probab=99.90 E-value=2e-23 Score=148.82 Aligned_cols=74 Identities=31% Similarity=0.527 Sum_probs=68.2
Q ss_pred CCCCceEEEEEEEe-cCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy14756 29 DVQDGLVHIRIQQR-NGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 106 (117)
Q Consensus 29 ~~~~~~I~I~~e~R-~grK~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~ 106 (117)
+++++.|+|+++++ +++|.||+|+||+. ..|+++|+|.||++|||||||++ ++|+||||||++|++||.++||
T Consensus 37 ~~~~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd-----~~IeiQGD~r~~v~~~L~~~G~ 111 (118)
T PRK06824 37 PAGDGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKD-----GVIEIQGDHVELLLAELLKRGF 111 (118)
T ss_pred CCcCceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEec-----CEEEEcCcHHHHHHHHHHHCCC
Confidence 45677999988866 78999999999996 88999999999999999999998 4999999999999999999999
Q ss_pred C
Q psy14756 107 A 107 (117)
Q Consensus 107 ~ 107 (117)
.
T Consensus 112 ~ 112 (118)
T PRK06824 112 K 112 (118)
T ss_pred e
Confidence 3
No 11
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=99.90 E-value=1.2e-23 Score=158.36 Aligned_cols=85 Identities=25% Similarity=0.354 Sum_probs=78.6
Q ss_pred CCCCceEEEEEEEecCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH-c-C
Q psy14756 29 DVQDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK-T-G 105 (117)
Q Consensus 29 ~~~~~~I~I~~e~R~grK~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~-~-G 105 (117)
.+..++|+|++++|+|||.||+|+||+. ++|++++||.|+++||||+||.+++.++++|+|||||+++|.+||.+ + .
T Consensus 85 K~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~~~ 164 (173)
T TIGR01159 85 KKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPE 164 (173)
T ss_pred cCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHcCC
Confidence 3458899999999999999999999999 99999999999999999999999887789999999999999999998 4 5
Q ss_pred CCCCCCeEE
Q psy14756 106 LAKPEQLKV 114 (117)
Q Consensus 106 ~~p~~~I~i 114 (117)
+ |+++|+.
T Consensus 165 v-~e~~I~~ 172 (173)
T TIGR01159 165 V-GDKDIKD 172 (173)
T ss_pred C-CHHHeee
Confidence 5 9999874
No 12
>KOG3239|consensus
Probab=99.69 E-value=7.3e-17 Score=121.66 Aligned_cols=83 Identities=27% Similarity=0.456 Sum_probs=76.5
Q ss_pred CceEEEEEEEecCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH-cCCCCC
Q psy14756 32 DGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK-TGLAKP 109 (117)
Q Consensus 32 ~~~I~I~~e~R~grK~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~-~G~~p~ 109 (117)
+++|.|.++-|.+||.||+|+||+. ++|++++||.|.++||||+||..+++..++|.||||..+.|.+|+.+ |.-+|+
T Consensus 100 pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~dDi~d~I~ekw~ev~e 179 (193)
T KOG3239|consen 100 PQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVKDDIFDFIPEKWPEVPE 179 (193)
T ss_pred CceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEEeccchHHHHHHHHHhcccCCc
Confidence 5789999999999999999999999 99999999999999999999999988889999999999999999987 666688
Q ss_pred CCeEE
Q psy14756 110 EQLKV 114 (117)
Q Consensus 110 ~~I~i 114 (117)
+++.|
T Consensus 180 d~~~I 184 (193)
T KOG3239|consen 180 DDVKI 184 (193)
T ss_pred cccee
Confidence 86544
No 13
>KOG2522|consensus
Probab=99.64 E-value=1.9e-16 Score=133.49 Aligned_cols=105 Identities=26% Similarity=0.355 Sum_probs=93.7
Q ss_pred ceeeccCCCCccccccCCCC----CCCCCceEEEEEEEecCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCC
Q psy14756 8 LVGRCQKTLDPFADAFKGSE----DDVQDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPE 82 (117)
Q Consensus 8 ~~~~~~~~f~p~~~~~~~~~----~~~~~~~I~I~~e~R~grK~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~ 82 (117)
|.-+|-+.|-||++.+.+|. ..++.++|.|.+++|.|||.||+|+||+. ++|+..+|..|++.|+|++||.+.++
T Consensus 438 l~~~~~~rmtp~yqi~~pdgepivkKgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg 517 (560)
T KOG2522|consen 438 LHPLLTNRMTPFYQIFKPDGEPIVKKGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPG 517 (560)
T ss_pred HHHHHHhcCCcceEEEcCCCceeeecCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCC
Confidence 33447788999999866654 27889999999999999999999999999 99999999999999999999999885
Q ss_pred C-ceEEEEcCchhHHHHHHHHH-cCCCCCCCeE
Q psy14756 83 Y-GEVLQLQGDQRENICQWLTK-TGLAKPEQLK 113 (117)
Q Consensus 83 ~-~~~I~lQGD~~~~v~~~L~~-~G~~p~~~I~ 113 (117)
. +.+++|||+|.+.|.++|.+ .|+ |+.+|+
T Consensus 518 ~kg~eVqvQGnqih~iadlL~k~ygi-pkK~I~ 549 (560)
T KOG2522|consen 518 FKGAEVQVQGNQIHSIADLLNKSYGI-PKKWID 549 (560)
T ss_pred CCCceEEEecchhhHHHHHHHHhhCC-CHHHHh
Confidence 4 68999999999999999998 799 988875
No 14
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=98.42 E-value=2.1e-06 Score=58.05 Aligned_cols=67 Identities=18% Similarity=0.435 Sum_probs=51.1
Q ss_pred EEEEEEEe-cCCceEEEEecCCCcccHHHHHHHHhhhcc------cceEEEecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy14756 35 VHIRIQQR-NGRKTLTTVQGLSSEYDLKKIVRACKKEFA------CNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 106 (117)
Q Consensus 35 I~I~~e~R-~grK~VT~V~GL~~~~dlk~laK~lKk~~a------cggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~ 106 (117)
+-|....+ .|++.+|+|+.++. |+..|.++|++.|+ ....|.+. ...|+|+|||.+.|++||.++||
T Consensus 14 LPVY~~~k~~g~~~~T~IrkI~G--D~~aL~~dL~~~l~~~~~~~~~~~V~~~---~g~i~IkG~~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 14 LPVYLDIKNGGNRKITVIRKIEG--DIWALKKDLRKFLGEKPKKKIDVRVNEL---TGHIEIKGDHVEEVKKWLLEKGF 87 (87)
T ss_pred ccEEEEEeCCCcEeEEEEEeecC--CHHHHHHHHHHHhhhhcCCCcceEEeec---CCEEEEcCccHHHHHHHHHHCcC
Confidence 33444444 57899999999998 67777777777775 23445543 46899999999999999999997
No 15
>KOG4034|consensus
Probab=96.98 E-value=0.0012 Score=49.53 Aligned_cols=60 Identities=23% Similarity=0.462 Sum_probs=43.0
Q ss_pred cCCceEEEEecCCCc-----ccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy14756 43 NGRKTLTTVQGLSSE-----YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 106 (117)
Q Consensus 43 ~grK~VT~V~GL~~~-----~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~ 106 (117)
+|+|.+|+|+.++.+ .|+.+.++..-++-=| +-|.+. .+.|.+-|||.+.|.+||.++||
T Consensus 105 ~G~k~lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~Vnel---sgqI~~~g~~v~~vr~~L~eKGF 169 (169)
T KOG4034|consen 105 RGNKILTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNEL---SGQIVLKGNHVDTVREWLQEKGF 169 (169)
T ss_pred CCcEEEEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhhh---cceEEEeCChHHHHHHHHHHccC
Confidence 489999999999963 2455554443333333 334332 36899999999999999999997
No 16
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=94.96 E-value=0.072 Score=38.96 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=47.5
Q ss_pred CceEEEEEEEecCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 32 DGLVHIRIQQRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 32 ~~~I~I~~e~R~grK~VT~V~GL~~-----~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.++..+.++ |+| |++.||.+ .=+++-++|.|.+.+|+.|++ ++ +.+.|+|.+..+..+-+.+
T Consensus 30 ~p~~~v~~e---G~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-~~----~~lii~G~~~~~~i~~~L~ 96 (138)
T PRK03988 30 VPKPDVRIE---GNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-EG----GRLILQGKFSPRVINEKID 96 (138)
T ss_pred CCCCeEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-cC----CEEEEEEeeCHHHHHHHHH
Confidence 344555555 555 99999986 237899999999999999999 42 6899999998877665443
No 17
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=94.68 E-value=0.094 Score=38.14 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=47.6
Q ss_pred CceEEEEEEEecCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 32 DGLVHIRIQQRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 32 ~~~I~I~~e~R~grK~VT~V~GL~~-----~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.++..+.++ |+| |++.||.+ .=+++-++|.|.+.+|+.|++.+ +.+.|+|.+..+..+-+.+
T Consensus 25 mP~~~v~~e---G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i~~-----~rlii~G~~~~~~i~~~L~ 91 (133)
T TIGR00311 25 VPKAYIVIE---GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNLEG-----GRLILQGKFTHFLLNERIE 91 (133)
T ss_pred CCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCceecC-----CEEEEEeecCHHHHHHHHH
Confidence 444555555 555 99999986 23689999999999999999953 4899999998877664443
No 18
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=94.20 E-value=0.16 Score=35.73 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=47.5
Q ss_pred eEEEEEEEecCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 34 LVHIRIQQRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 34 ~I~I~~e~R~grK~VT~V~GL~~-----~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
+..+.++ |+| -|++.||.+ .=+++-++|.|.+.+|+.|++.+. +.+.|+|.+..+-.+-+.+
T Consensus 8 ~~~v~~e---G~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~~----~rlii~G~~~~~~i~~~l~ 74 (110)
T smart00653 8 PPQVLRE---GKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGK----GRLIVNGRFTPKKLQDLLR 74 (110)
T ss_pred CCeEEEE---cCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECCC----CeEEEEEeeCHHHHHHHHH
Confidence 4455555 554 688999986 237899999999999999999763 5899999998776664443
No 19
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=92.26 E-value=0.39 Score=36.88 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=46.7
Q ss_pred CceEEEEEEEecCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 32 DGLVHIRIQQRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 32 ~~~I~I~~e~R~grK~VT~V~GL~~-----~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.++..+.++ |+| |+|.||.+ .=+++-++|.|.+.||+.|++.+ +...|+|.+..+-.+-+.+
T Consensus 26 ~p~~~v~~e---G~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~~~-----~~~ii~G~~~~~~i~~~l~ 92 (201)
T PRK12336 26 IPEPKIFIE---GKT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGKIEG-----GRAVFNGKFTEEDIQAAID 92 (201)
T ss_pred cCCceEEEE---cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCcceecC-----CEEEEEeeeCHHHHHHHHH
Confidence 344455555 544 99999986 23689999999999999999964 3799999998776664443
No 20
>PRK14451 acylphosphatase; Provisional
Probab=92.05 E-value=0.9 Score=30.53 Aligned_cols=52 Identities=8% Similarity=0.084 Sum_probs=41.9
Q ss_pred EecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 51 VQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 51 V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
|+|.=.++-+-..++.+.++++-.|.|...+++.-+|++||+- ++|.+|+..
T Consensus 9 V~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 60 (89)
T PRK14451 9 ISGRVQGVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKE-DKLEEFYTW 60 (89)
T ss_pred EEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 6676666778888889999999999999988777999999987 346665544
No 21
>PRK14434 acylphosphatase; Provisional
Probab=91.19 E-value=1.4 Score=29.84 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=40.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcc-cceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFA-CNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~a-cggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+--....+-++++ =.|.|...+++.-+|++||+..+.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~ 61 (92)
T PRK14434 7 IVSGRVQGVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQE 61 (92)
T ss_pred EEEEeecceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHH
Confidence 45666655666777788888888 8999998877778999999865555555543
No 22
>PRK14425 acylphosphatase; Provisional
Probab=90.68 E-value=1.1 Score=30.43 Aligned_cols=53 Identities=9% Similarity=0.158 Sum_probs=39.5
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchh--HHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR--ENICQWLT 102 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~--~~v~~~L~ 102 (117)
.|+|.=.++-+-..++.+.++++=.|.|+..+++.-+|.+||+.. ++..++|.
T Consensus 11 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 11 RITGRVQGVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred EEEEeEecccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 345655556677777888888889999999877779999999665 55555554
No 23
>PRK14439 acylphosphatase; Provisional
Probab=90.43 E-value=1.4 Score=33.20 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=42.3
Q ss_pred EEEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 48 LTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 48 VT~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
--.|+|.-.++-.-..++.+-.+++=.|.|...+++.-+|++||+... |.+|+..
T Consensus 78 ~i~VsGrVQGVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~-Ie~Fi~~ 132 (163)
T PRK14439 78 IAWVYGRVQGVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQ-VEKLMQW 132 (163)
T ss_pred EEEEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHH
Confidence 345667766777788888888999999999998777799999998743 5555443
No 24
>PRK14450 acylphosphatase; Provisional
Probab=90.34 E-value=1.8 Score=29.02 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=41.6
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCc-eEEEEcCc--hhHHHHHHHHHcC
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYG-EVLQLQGD--QRENICQWLTKTG 105 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~-~~I~lQGD--~~~~v~~~L~~~G 105 (117)
+|+|.=.++-.-..+..+..+++=.|.|...+++. -+|++||+ ..+...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~-~g 64 (91)
T PRK14450 7 IVKGKVQGVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR-SG 64 (91)
T ss_pred EEEEEecCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh-hC
Confidence 45565556667778888888899999999887764 79999999 5566666665 44
No 25
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=89.86 E-value=0.61 Score=33.50 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=46.0
Q ss_pred CCceEEEEEEEecCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHH
Q psy14756 31 QDGLVHIRIQQRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 100 (117)
Q Consensus 31 ~~~~I~I~~e~R~grK~VT~V~GL~~-----~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~ 100 (117)
..+++.+.++ |+ .=|++.||.+ .=+++-++|.|.+.+|+.|++.+. +.+.|+|.+..+-.+-
T Consensus 18 kmP~~~v~~e---G~-~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~~----~~lii~G~~~~~~i~~ 84 (125)
T PF01873_consen 18 KMPPPQVKIE---GK-KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDGK----GRLIINGRFSSKQIQD 84 (125)
T ss_dssp CCCT--EEEE---TS-TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEETT----TEEEEESSSSCCHHHH
T ss_pred ecCCCeEEEE---cc-ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECCC----CEEEEEEecCHHHHHH
Confidence 3445556655 54 5688889886 237999999999999999999863 5899999987665553
No 26
>PRK14446 acylphosphatase; Provisional
Probab=89.59 E-value=1.6 Score=29.39 Aligned_cols=53 Identities=9% Similarity=0.025 Sum_probs=41.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+--.+..+.++++=.|.|...+++.-+|++||+-. .+.+|+..
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~ 59 (88)
T PRK14446 7 VVSGVVQGVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAW 59 (88)
T ss_pred EEEEecCCeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 456666666677788888899999999999888889999999864 55555544
No 27
>PRK14437 acylphosphatase; Provisional
Probab=89.56 E-value=2 Score=30.06 Aligned_cols=53 Identities=21% Similarity=0.128 Sum_probs=41.0
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.-.++-+-..+..+.++++=.|.|...+++.-+|.+||+.. .|.+|+..
T Consensus 28 ~V~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~ie~f~~~ 80 (109)
T PRK14437 28 TVSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERD-SIMILTEW 80 (109)
T ss_pred EEEEecCCcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHH-HHHHHHHH
Confidence 356766666777888888888999999999877779999999885 45554433
No 28
>PRK14443 acylphosphatase; Provisional
Probab=89.55 E-value=1.8 Score=29.45 Aligned_cols=53 Identities=9% Similarity=0.228 Sum_probs=39.4
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+-..++.+..+++=.|.|...+++.-+|++||+-.. |.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~ 61 (93)
T PRK14443 9 RVTGFVQGVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEEN-LNKFIDA 61 (93)
T ss_pred EEEEeeCCccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHH-HHHHHHH
Confidence 4556555666777788888889999999998888899999998433 4444443
No 29
>PRK14444 acylphosphatase; Provisional
Probab=89.20 E-value=2.7 Score=28.32 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=40.9
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 49 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 49 T~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
-+|+|.=.++-+-..+..+.++++=+|.|+..+++.-+|.+||+- ++|.+|+..
T Consensus 8 i~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (92)
T PRK14444 8 VFISGRVQGVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISW 61 (92)
T ss_pred EEEEEeeCCcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 345676666667777888888888999999987776899999995 446666654
No 30
>PRK14445 acylphosphatase; Provisional
Probab=88.26 E-value=2.4 Score=28.40 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=40.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
+|+|.-.++-+-..+..+-++++=.|.|...+++.-+|.+||+-. +|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~l~~f~~~ 61 (91)
T PRK14445 9 IVSGLVQGVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSG-MIDELIKQ 61 (91)
T ss_pred EEEEEEcCcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 456655566677788888888999999999877778999999873 35555544
No 31
>PRK14449 acylphosphatase; Provisional
Probab=88.18 E-value=3.4 Score=27.62 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=41.5
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
+|+|.=.++-+-..+..+..+++=.|.|...+++.-+|++||+. +.|.+|+..
T Consensus 8 ~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14449 8 RITGHVQGVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINF 60 (90)
T ss_pred EEEEeecCcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHH
Confidence 45665556677788888888899999999887777999999987 447776655
No 32
>PRK14452 acylphosphatase; Provisional
Probab=88.12 E-value=3.5 Score=28.79 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=40.6
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHH
Q psy14756 49 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 101 (117)
Q Consensus 49 T~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L 101 (117)
-.|+|.-.++-+-..+..+.++++=.|.|...+++.-+|++||+.. .|.+|+
T Consensus 24 i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~ 75 (107)
T PRK14452 24 FLIEGRVQGVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELR 75 (107)
T ss_pred EEEEEeecCcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 3456766666777788888888889999999877779999999964 566663
No 33
>PRK14420 acylphosphatase; Provisional
Probab=87.71 E-value=3.4 Score=27.54 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=39.3
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+-..+..+..+++=.|.|...+++.-+|++||+- +.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 59 (91)
T PRK14420 7 IVDGRVQGVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDA 59 (91)
T ss_pred EEEEeeCCcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHH
Confidence 34555555556667777777888999999887777899999975 667777665
No 34
>PRK14423 acylphosphatase; Provisional
Probab=87.50 E-value=3.3 Score=27.84 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=40.6
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+-..++.+.++++=.|.|...+++.-+|.+||+.. .|.+|+..
T Consensus 10 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 62 (92)
T PRK14423 10 FVSGRVQGVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEW 62 (92)
T ss_pred EEEEecCCeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 346666666677788888888999999998877768999999864 56665544
No 35
>PRK14428 acylphosphatase; Provisional
Probab=87.49 E-value=3.8 Score=28.11 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=41.5
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+--.+..+.++++=.|.|...+++.-+|++||+. +.|.+|+..
T Consensus 13 ~v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~ 65 (97)
T PRK14428 13 VVTGLVQGVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQ 65 (97)
T ss_pred EEEEecCCccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHH
Confidence 45666666667778888888899999999987777999999986 556666654
No 36
>PRK14436 acylphosphatase; Provisional
Probab=87.21 E-value=4.1 Score=27.37 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=40.7
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+-..+..+..+++=.|.|...+++.-+|++||+- ++|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (91)
T PRK14436 9 RIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGW 61 (91)
T ss_pred EEEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 34565556667778888888889999999987777899999987 447776654
No 37
>PRK14426 acylphosphatase; Provisional
Probab=87.18 E-value=3.6 Score=27.65 Aligned_cols=53 Identities=8% Similarity=0.025 Sum_probs=39.9
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-.-..+..+-++++=.|.|...+++.-+|++||+.. +|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 61 (92)
T PRK14426 9 WVYGRVQGVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEE-QVEKLMEW 61 (92)
T ss_pred EEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHH-HHHHHHHH
Confidence 445655556677778888888999999999877778999999963 35555544
No 38
>PRK14433 acylphosphatase; Provisional
Probab=86.40 E-value=2.9 Score=27.90 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=40.9
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
+|+|.=.++-.-..++.+..+++=.|.|...+++.-+|.+|||-. .|.+|+..
T Consensus 6 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 58 (87)
T PRK14433 6 LVSGRVQGVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHW 58 (87)
T ss_pred EEEEeeeCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHH
Confidence 455655556677778888888999999999877778999999974 67776655
No 39
>PRK14435 acylphosphatase; Provisional
Probab=86.11 E-value=4.4 Score=27.15 Aligned_cols=53 Identities=17% Similarity=0.391 Sum_probs=39.8
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
+|+|.=.++-+-..++.+..+++=.|.|...+++.-+|++||+- ++|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~ 59 (90)
T PRK14435 7 RVEGIVQGVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNE 59 (90)
T ss_pred EEEEEeCCcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 44565555666777777888888999999987777999999987 446666554
No 40
>PRK14447 acylphosphatase; Provisional
Probab=85.70 E-value=3.7 Score=27.77 Aligned_cols=53 Identities=11% Similarity=0.143 Sum_probs=41.4
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCC-ceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEY-GEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~-~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+--.++.+.++++=.|.|...+++ .-+|.+||+ .++|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~ 62 (95)
T PRK14447 9 FIRGKVQGVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEW 62 (95)
T ss_pred EEEEecCCccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHH
Confidence 4567666667778888888889999999988776 489999998 5666666654
No 41
>PRK14429 acylphosphatase; Provisional
Probab=85.63 E-value=4.9 Score=26.85 Aligned_cols=52 Identities=10% Similarity=0.148 Sum_probs=38.9
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 102 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~ 102 (117)
.|+|.=.++-+-..+..+..+++=.|.|...+++.-+|++||+-.. |.+|+.
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-i~~f~~ 58 (90)
T PRK14429 7 KLTGKVQGVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPA-VDNLIA 58 (90)
T ss_pred EEEEeecCeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHH-HHHHHH
Confidence 3456555566777788888889999999998777789999998753 444444
No 42
>PRK14448 acylphosphatase; Provisional
Probab=85.57 E-value=6.2 Score=26.42 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=40.9
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-.-...+.+..+++=.|.|...+++.-+|.+||+- ++|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 59 (90)
T PRK14448 7 IVYGHVQGVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSD-AQIAAFRDW 59 (90)
T ss_pred EEEEeecCcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCH-HHHHHHHHH
Confidence 45666666677778888888899999999988777899999987 336665544
No 43
>PRK14430 acylphosphatase; Provisional
Probab=85.47 E-value=5.2 Score=26.96 Aligned_cols=52 Identities=8% Similarity=0.075 Sum_probs=37.9
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 102 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~ 102 (117)
+|.|.=.++-+-..+..+..+++=.|.|...+++.-+|++||+- +.|.+|+.
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~-~~i~~f~~ 60 (92)
T PRK14430 9 VAHGRVQGVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTV-RQLEALRA 60 (92)
T ss_pred EEEEeecceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHH
Confidence 45565555556777777888888999999987777899999976 44444443
No 44
>PRK14441 acylphosphatase; Provisional
Probab=85.33 E-value=5.2 Score=26.95 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=39.6
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+-..+..+-++++=.|.|...+++.-+|.+||+-. .|.+|+..
T Consensus 10 ~v~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~ 62 (93)
T PRK14441 10 VVSGRVQGVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERA-AVGALVRW 62 (93)
T ss_pred EEEEecCCccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHH-HHHHHHHH
Confidence 456666666677788888888999999998877778999999843 45554443
No 45
>PRK14422 acylphosphatase; Provisional
Probab=85.28 E-value=6.6 Score=26.48 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=40.8
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-.-..++.+..+++=.|.|...+++.-+|.+||+... |.+|+..
T Consensus 11 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~ 63 (93)
T PRK14422 11 WVHGHVQGVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAA-CEKLLQL 63 (93)
T ss_pred EEEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHH
Confidence 4566666666778888888889999999998777789999998754 5555544
No 46
>PRK14440 acylphosphatase; Provisional
Probab=85.22 E-value=3.9 Score=27.42 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=38.7
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
+|+|.=.++-.-..+..+.++++=.|.|...+++.-+|.+||+- +.|.+|+..
T Consensus 8 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14440 8 RVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLER 60 (90)
T ss_pred EEEEeEeccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHH
Confidence 34555545556667777777888889998877777899999977 556666654
No 47
>PRK14421 acylphosphatase; Provisional
Probab=85.15 E-value=5.4 Score=27.42 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=39.4
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
+|+|.-.++-+-..+..+.++++=.|.|...+++.-+|++||+-.. |.+|+..
T Consensus 9 ~v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~ 61 (99)
T PRK14421 9 TIRGRVQGVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADA-VAEMIAR 61 (99)
T ss_pred EEEEeEcCccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHH-HHHHHHH
Confidence 4556555566777778888888899999988777789999998743 5555543
No 48
>PRK14438 acylphosphatase; Provisional
Probab=85.10 E-value=5.1 Score=26.83 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=41.5
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 49 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 49 T~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
-.|+|.=.++-+-..+..+..+++=.|.|...+++.-+|.+||+- ++|.+|+..
T Consensus 7 i~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 60 (91)
T PRK14438 7 VTVKGLVQGVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDW 60 (91)
T ss_pred EEEEEecCCcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHH
Confidence 345676666667778888888899999999987777899999986 446666654
No 49
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=84.90 E-value=5.7 Score=26.14 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=39.6
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
+|+|.=.++-.-..++.+-.+++=.|.|...+++.-+|++||+- +.|.+|+..
T Consensus 9 ~v~G~VQGVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~ 61 (91)
T PF00708_consen 9 IVSGRVQGVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKW 61 (91)
T ss_dssp EEEEETSSSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHH
T ss_pred EEEEEECcCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHH
Confidence 46676666778888888999999999999987777999999965 445555544
No 50
>PRK14442 acylphosphatase; Provisional
Probab=84.46 E-value=4.7 Score=27.08 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=41.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
+|+|.=.++-+-..+..+-++++=.|.|...+++.-+|++||+.. .|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~ 61 (91)
T PRK14442 9 YVGGRVQGVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALERW 61 (91)
T ss_pred EEEEecCCccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHH
Confidence 456766666677788888888999999999877779999999875 46555544
No 51
>PRK14432 acylphosphatase; Provisional
Probab=83.12 E-value=6.1 Score=26.70 Aligned_cols=53 Identities=8% Similarity=0.051 Sum_probs=39.8
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEc-CchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQ-GDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQ-GD~~~~v~~~L~~ 103 (117)
+|+|.=.++-.-..++.+.++++=.|.|...+++.-+|++| ||. +.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~ 60 (93)
T PRK14432 7 FISGKVQGVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKL 60 (93)
T ss_pred EEEEeecCeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHH
Confidence 45565555666777778888888999999987777899998 986 556666654
No 52
>PRK14427 acylphosphatase; Provisional
Probab=81.34 E-value=5.9 Score=26.78 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=40.3
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+-..++.+-++++=.|.|...+++.-+|.+||+.. +|.+|+..
T Consensus 11 ~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~i~~f~~~ 63 (94)
T PRK14427 11 RVFGVVQGVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGE-QVEKLLDW 63 (94)
T ss_pred EEEEEeCCcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 345655556677778888888999999998877778999999884 36666654
No 53
>PRK14431 acylphosphatase; Provisional
Probab=81.16 E-value=9.3 Score=25.58 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=38.5
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCch--hHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~--~~~v~~~L~~ 103 (117)
.|+|.=.++-+--.++.+-++++=.|.|...++ +-+|++||+. .++..++|.+
T Consensus 7 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 7 QVFGRVQGVGFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred EEEEecCCeeEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc
Confidence 346666666667778888888999999998876 5999999976 3444444443
No 54
>PRK14424 acylphosphatase; Provisional
Probab=79.43 E-value=10 Score=25.75 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=40.3
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 49 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 49 T~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
-+|+|-=.++-+-..+..+..+++=.|.|...+++.-+|.+||+-.. |.+|+..
T Consensus 11 ~~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-v~~f~~~ 64 (94)
T PRK14424 11 VRVRGVVQGVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQ-IDRMLAW 64 (94)
T ss_pred EEEEEeecCCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHH-HHHHHHH
Confidence 34566655666777788888889999999987776789999998743 5555543
No 55
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=72.88 E-value=19 Score=24.43 Aligned_cols=53 Identities=11% Similarity=0.131 Sum_probs=42.9
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|-=.++..-..++.....++-.|.|+..+++.-+|..||+--. +..|+..
T Consensus 9 ~V~GrVQGVGFR~~~~~~A~~lgl~G~V~N~~DGsVeiva~G~~~~-v~~~~~~ 61 (92)
T COG1254 9 RVYGRVQGVGFRYFTRSEALRLGLTGWVKNLDDGSVEIVAEGPDEA-VEKFIEW 61 (92)
T ss_pred EEEEEeccccHHHHHHHHHHHCCCEEEEEECCCCeEEEEEEcCHHH-HHHHHHH
Confidence 4566666677788888888889999999998888899999999877 6666654
No 56
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=59.53 E-value=6.3 Score=25.45 Aligned_cols=24 Identities=33% Similarity=0.757 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 93 QRENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 93 ~~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
--..|+++|...|+ |.+.|.+.|+
T Consensus 55 RA~~V~~~L~~~gi-~~~ri~~~~~ 78 (97)
T PF00691_consen 55 RAEAVKQYLVENGI-PPERISVVGY 78 (97)
T ss_dssp HHHHHHHHHHHTTS-SGGGEEEEEE
T ss_pred HHHHHHHHHHHcCC-ChHhEEEEEE
Confidence 34678999999999 7888887653
No 57
>PF11388 DotA: Phagosome trafficking protein DotA; InterPro: IPR021528 DotA is essential for intracellular growth in Legionella []. DotA is thought to play an important role in regulating initial phagosome trafficking decisions either upon or immediately after macrophage uptake [].
Probab=57.40 E-value=6 Score=27.60 Aligned_cols=28 Identities=21% Similarity=0.495 Sum_probs=22.3
Q ss_pred EEecCCC-cccHHHHHHHHhhhcccceEEEe
Q psy14756 50 TVQGLSS-EYDLKKIVRACKKEFACNGTVIE 79 (117)
Q Consensus 50 ~V~GL~~-~~dlk~laK~lKk~~acggsv~~ 79 (117)
.++||+. .+|++.|.|.|++ .|.++...
T Consensus 3 s~tgle~s~fd~~ql~k~f~~--tc~~~~a~ 31 (105)
T PF11388_consen 3 SNTGLEKSNFDPAQLTKPFGK--TCQGDYAL 31 (105)
T ss_pred cccccccccCCHHHhhhhhhc--cccCchHH
Confidence 3579998 8999999999999 56665443
No 58
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=48.16 E-value=11 Score=24.89 Aligned_cols=24 Identities=13% Similarity=0.414 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 93 QRENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 93 ~~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
-...|.++|.+.|+ +++.|.+.||
T Consensus 56 RA~~V~~~L~~~gi-~~~ri~~~g~ 79 (104)
T TIGR02802 56 RANAVKDYLQAKGV-SASQIETVSY 79 (104)
T ss_pred HHHHHHHHHHHcCC-CHHHeEEEee
Confidence 34578899999999 7888888764
No 59
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=46.27 E-value=26 Score=19.92 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=19.3
Q ss_pred ceEEEEcCc-hhHHHHHHHHHcCC
Q psy14756 84 GEVLQLQGD-QRENICQWLTKTGL 106 (117)
Q Consensus 84 ~~~I~lQGD-~~~~v~~~L~~~G~ 106 (117)
|+.+.+.|. +..+|+++|.+.++
T Consensus 9 gd~~~~~g~~~~k~lkk~~~e~ki 32 (47)
T TIGR02433 9 GDRIKLLGRKGSKKLKKLFIDAKV 32 (47)
T ss_pred CCEEEECCCCCCchHHHHHHHcCC
Confidence 457888776 67899999999998
No 60
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=46.06 E-value=46 Score=22.83 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=21.9
Q ss_pred eEEEEecCCCcccHHHHHHHHhhhc-ccceEEEec
Q psy14756 47 TLTTVQGLSSEYDLKKIVRACKKEF-ACNGTVIEH 80 (117)
Q Consensus 47 ~VT~V~GL~~~~dlk~laK~lKk~~-acggsv~~~ 80 (117)
.+-.|.||+...|...+...|++.+ .|||-|..-
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v 37 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV 37 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE
Confidence 3557899999778888888888776 699977664
No 61
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.73 E-value=31 Score=21.15 Aligned_cols=21 Identities=14% Similarity=0.242 Sum_probs=18.8
Q ss_pred EEEEcC-chhHHHHHHHHHcCC
Q psy14756 86 VLQLQG-DQRENICQWLTKTGL 106 (117)
Q Consensus 86 ~I~lQG-D~~~~v~~~L~~~G~ 106 (117)
.+++++ +|.+.+.+.|.+.|+
T Consensus 43 ~ie~~~~~~~~~i~~~L~~~G~ 64 (68)
T cd04885 43 GIQVPDREDLAELKERLEALGY 64 (68)
T ss_pred EEEeCCHHHHHHHHHHHHHcCC
Confidence 578888 899999999999998
No 62
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=42.37 E-value=75 Score=20.34 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=22.7
Q ss_pred ccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 58 YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 58 ~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|.+.+..-+.=...||..+ +|.++|+--++..+.|.+
T Consensus 42 vdakSil~l~~L~~~~G~~i--------~i~~~G~de~~a~~~i~~ 79 (84)
T PF00381_consen 42 VDAKSILGLMSLGAKKGDEI--------EIEAEGEDEEEALEAIAE 79 (84)
T ss_dssp EETTSHHHHHHHTBSTTEEE--------EEEEESTTHHHHHHHHHH
T ss_pred EecCCHHHHhhhhcCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 34444444444334444433 688899988888777654
No 63
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=40.62 E-value=69 Score=24.18 Aligned_cols=55 Identities=24% Similarity=0.417 Sum_probs=37.7
Q ss_pred ceEEEEecCCCcccHHHHHHHHhh-hcccceEEEecCCCceEEEEcCchhH---HHHHHHHHcCC
Q psy14756 46 KTLTTVQGLSSEYDLKKIVRACKK-EFACNGTVIEHPEYGEVLQLQGDQRE---NICQWLTKTGL 106 (117)
Q Consensus 46 K~VT~V~GL~~~~dlk~laK~lKk-~~acggsv~~~~~~~~~I~lQGD~~~---~v~~~L~~~G~ 106 (117)
..+|+.+|++.+ ..+++.|.+|. ++=.-+++.. ++|-|.|-.|+ .++++|.+..+
T Consensus 92 q~i~lk~GI~~e-~AKkIvK~IKd~klKVqa~IQG-----d~vRVtgKkrDDLQ~viallk~~d~ 150 (161)
T PRK05412 92 QEVKLKQGIDQE-LAKKIVKLIKDSKLKVQAQIQG-----DQVRVTGKKRDDLQAVIALLRKADL 150 (161)
T ss_pred EEEehhhccCHH-HHHHHHHHHHhcCCceeEEecC-----cEEEEecCCHhHHHHHHHHHHhccC
Confidence 578899999973 36667666663 2335666654 69999996666 66677776533
No 64
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=39.81 E-value=65 Score=25.20 Aligned_cols=60 Identities=25% Similarity=0.222 Sum_probs=37.7
Q ss_pred cCCceEEEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcC-----chhHHHHHHHHHcCC
Q psy14756 43 NGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQG-----DQRENICQWLTKTGL 106 (117)
Q Consensus 43 ~grK~VT~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQG-----D~~~~v~~~L~~~G~ 106 (117)
+|+...+++= ....|+++|.++|+++++-+...-.+. .-.|.+.+ +....+.++|.+.|+
T Consensus 14 Kg~~~~~~~L--~~~~~~~~l~~~L~~kl~~a~~FF~~a--pvvld~~~~~~~~~~~~~L~~~l~~~gl 78 (239)
T PRK05177 14 RGRSFLAVVL--SPEAPLDDWLARLDALIARSPGFFLGR--PVVLDLAGLAIERSQLAALLAELEARGI 78 (239)
T ss_pred ECCceEEEEE--eCCCCHHHHHHHHHHHHHhChhhhCCC--eEEEEeCCCCCCHHHHHHHHHHHHHCCC
Confidence 3455555553 335689999999999887665433321 13455554 356778888888776
No 65
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=39.04 E-value=1.2e+02 Score=20.25 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=27.3
Q ss_pred ccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 58 YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 58 ~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|.+.+..-+.=...||..| +|.+.|+--++..+.|.+
T Consensus 44 ~~akSil~lm~Lg~~~G~~i--------~v~~~G~De~~A~~~l~~ 81 (90)
T PRK10897 44 AEANSVIALLMLDSAKGRQI--------EVEATGPQEEEALAAVIA 81 (90)
T ss_pred EchHhHHHHHHhCCCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 46666766666666666665 588899988887776655
No 66
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=35.89 E-value=33 Score=24.66 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 95 ENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 95 ~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
+.+++.|.+.|+ |++.|.+-|+
T Consensus 146 e~~~~~l~~~Gi-~~~~I~vtGi 167 (169)
T PF06925_consen 146 EEVKEELIERGI-PPERIHVTGI 167 (169)
T ss_pred HHHHHHHHHcCC-ChhHEEEeCc
Confidence 788899999999 8999999885
No 67
>COG1918 FeoA Fe2+ transport system protein A [Inorganic ion transport and metabolism]
Probab=34.58 E-value=85 Score=20.47 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=23.1
Q ss_pred eEEEEcCchhHHHHHHHHHcCCCCCCCeEE
Q psy14756 85 EVLQLQGDQRENICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 85 ~~I~lQGD~~~~v~~~L~~~G~~p~~~I~i 114 (117)
....+.|.. .+..-|.++||+|...|+|
T Consensus 13 ~V~~i~~~~--~~~~RL~~mG~~~G~~i~v 40 (75)
T COG1918 13 RVVSIDGGN--GLRRRLLSMGIVPGASITV 40 (75)
T ss_pred EEEEecCCH--HHHHHHHHcCCCCCCEEEE
Confidence 456677666 8899999999999999876
No 68
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.55 E-value=50 Score=21.25 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=18.6
Q ss_pred EEEEcC--chhHHHHHHHHHcCC
Q psy14756 86 VLQLQG--DQRENICQWLTKTGL 106 (117)
Q Consensus 86 ~I~lQG--D~~~~v~~~L~~~G~ 106 (117)
.+++.+ +|.+++.+.|.+.|+
T Consensus 45 ~ie~~~~~~~~~~i~~~L~~~G~ 67 (85)
T cd04906 45 GVSVANGAEELAELLEDLKSAGY 67 (85)
T ss_pred EEEeCCcHHHHHHHHHHHHHCCC
Confidence 467778 999999999999999
No 69
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=33.15 E-value=44 Score=21.25 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHHHHHcCCCCCCCeEEcCC
Q psy14756 97 ICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 97 v~~~L~~~G~~p~~~I~ihg~ 117 (117)
|-+.|.++|+.+.+.|.|.++
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHHHHHHcCCCCCCEEEEccE
Confidence 566788999999999988763
No 70
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=32.95 E-value=53 Score=24.42 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=37.8
Q ss_pred eEEEEecCCC-----cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHH-HHHHHH
Q psy14756 47 TLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENI-CQWLTK 103 (117)
Q Consensus 47 ~VT~V~GL~~-----~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v-~~~L~~ 103 (117)
..|++.++.+ .-|++-++|.|++.++..|++... ..+.+||-..... .+.|..
T Consensus 42 ~~Ti~~Nf~dia~~l~rDp~h~~k~l~kel~t~g~~d~~----~rlvl~g~f~~~~i~~~i~~ 100 (151)
T COG1601 42 NRTIIRNFGDIAEALNRDPEHLVKFLKKELGTAGSIDGK----GRLVLQGKFSDSEIVNEIER 100 (151)
T ss_pred chhHHHhHHHHHHHhcCCHHHHHHHHHHHhccccccCCc----ceEEEEecccHHHHHHHHHH
Confidence 3466777653 458999999999999999999863 4677777665443 334433
No 71
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=32.74 E-value=1.3e+02 Score=22.91 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=30.1
Q ss_pred CCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHH
Q psy14756 54 LSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 100 (117)
Q Consensus 54 L~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~ 100 (117)
+.++.+..++++.+++.....=...+....+-.|++||+.. .+.+.
T Consensus 5 ~~~~~E~~~fle~l~~~~~~~~~~v~~k~n~l~I~i~G~~~-eike~ 50 (190)
T PF09840_consen 5 FRDDEECEEFLERLSKMVKSIYIYVEVKGNSLKIEIQGYEK-EIKEA 50 (190)
T ss_pred cCChHHHHHHHHHHHhhccCcEEEEEEeCCEEEEEEecChH-HHHHH
Confidence 44456788899999887444333233333457999999988 55543
No 72
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=30.24 E-value=1e+02 Score=19.80 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=22.2
Q ss_pred EEEcCchhHHHHHHHHHcCCCCCCCeEEc
Q psy14756 87 LQLQGDQRENICQWLTKTGLAKPEQLKVH 115 (117)
Q Consensus 87 I~lQGD~~~~v~~~L~~~G~~p~~~I~ih 115 (117)
+.++.+-...+.+.|.+.|+.|...|++-
T Consensus 12 ~~~~~~~~~~~~~rL~~mGl~pG~~V~v~ 40 (74)
T PRK09555 12 TGFSREISPAYRQKLLSLGMLPGSSFNVV 40 (74)
T ss_pred EEEccCCChHHHHHHHHcCCCCCCEEEEE
Confidence 33455555678899999999999998873
No 73
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=30.02 E-value=35 Score=21.99 Aligned_cols=23 Identities=17% Similarity=0.567 Sum_probs=17.4
Q ss_pred hHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 94 RENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
-..|.++|.+.|+ +.+.|.+.|+
T Consensus 59 A~~v~~~L~~~g~-~~~~i~~~~~ 81 (106)
T cd07185 59 AEAVADYLVSKGV-DASRITAVGY 81 (106)
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEe
Confidence 3567889999998 5558887764
No 74
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=28.95 E-value=1.8e+02 Score=19.56 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=21.2
Q ss_pred CCceEEEEcCc--------hhHHHHHHHHHcCCCCCCCeEEc
Q psy14756 82 EYGEVLQLQGD--------QRENICQWLTKTGLAKPEQLKVH 115 (117)
Q Consensus 82 ~~~~~I~lQGD--------~~~~v~~~L~~~G~~p~~~I~ih 115 (117)
.++-+|+|++. .+.-+.++|.+.|+ +.-.|.++
T Consensus 25 ~~gi~i~l~S~v~~~fg~~i~~vi~~~l~~~~i-~~~~v~i~ 65 (87)
T PF06857_consen 25 SGGIEIELESSVVKQFGDQIRAVIRETLEELGI-EDAKVEIN 65 (87)
T ss_pred CCcEEEEEEchHHhhhHHHHHHHHHHHHHhcCC-CceEEEEE
Confidence 35567888866 34455567777888 55456654
No 75
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=28.78 E-value=39 Score=23.88 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=19.5
Q ss_pred EEEEcCchhH-HHHHHHHHcCCCCCCCeEE
Q psy14756 86 VLQLQGDQRE-NICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 86 ~I~lQGD~~~-~v~~~L~~~G~~p~~~I~i 114 (117)
-|=||=|..+ -|.+-|.++|+ |++.|.+
T Consensus 67 KIWIq~d~TE~gIa~eLve~GV-pk~dIVL 95 (111)
T PF08869_consen 67 KIWIQRDGTEDGIAEELVEAGV-PKEDIVL 95 (111)
T ss_dssp EEEEEEESSSSHHHHHHHHTT---GGGEEE
T ss_pred eEEEEcCchhhHHHHHHHHcCC-CHHHEEE
Confidence 4666666654 57779999999 9999875
No 76
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=28.17 E-value=1e+02 Score=24.85 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=43.1
Q ss_pred CCCcccHHHHHHHHhhhcccceEEEecCCC-ceEEEEcCchhHHHHHHHHHcCCCCCC
Q psy14756 54 LSSEYDLKKIVRACKKEFACNGTVIEHPEY-GEVLQLQGDQRENICQWLTKTGLAKPE 110 (117)
Q Consensus 54 L~~~~dlk~laK~lKk~~acggsv~~~~~~-~~~I~lQGD~~~~v~~~L~~~G~~p~~ 110 (117)
|...++.++++..|.....|+.-|....++ -+.-.=++..-+++.++|..+.| |++
T Consensus 22 L~~~l~y~~ma~~ladVi~~N~~iis~kGklLGy~~~~~~~~dr~~q~~~~r~f-Pde 78 (261)
T COG4465 22 LQKPLPYNEMAETLADVIECNAFIISRKGKLLGYSFNYKTNNDRVKQMFEDRKF-PDE 78 (261)
T ss_pred ccCcccHHHHHHHHHHHhhcceEEEeCCCceeccccccccchHHHHHHHHHhcC-CHH
Confidence 444678999999999999999999985433 13344566678999999998888 654
No 77
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=27.97 E-value=1.4e+02 Score=17.64 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=22.1
Q ss_pred HHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHH
Q psy14756 65 RACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 101 (117)
Q Consensus 65 K~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L 101 (117)
+.|...++|.-.+-+.......|.|.|+ .+.+.+..
T Consensus 23 ~~i~~~~g~~I~i~~~~~~~~~v~I~G~-~~~v~~A~ 58 (62)
T cd02394 23 RKIMEETGVKIRFPDPGSKSDTITITGP-KENVEKAK 58 (62)
T ss_pred HHHHHHhCCEEEcCCCCCCCCEEEEEcC-HHHHHHHH
Confidence 4455556666666553333468999999 56665543
No 78
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=27.96 E-value=35 Score=23.84 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=18.9
Q ss_pred hHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 94 RENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
-..|+++|.+.|+ +++.|.+-|+
T Consensus 90 A~aV~~~L~~~Gi-~~~ri~~~g~ 112 (137)
T TIGR03350 90 AKAVADVLAQGGV-PAGRVRAEGR 112 (137)
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 5678899999999 7778888764
No 79
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=27.37 E-value=56 Score=24.50 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=23.6
Q ss_pred CceEEEEecCCC-cccHHHHHHHHhhhcccce
Q psy14756 45 RKTLTTVQGLSS-EYDLKKIVRACKKEFACNG 75 (117)
Q Consensus 45 rK~VT~V~GL~~-~~dlk~laK~lKk~~acgg 75 (117)
++.||+|+||.. +..|.-+.++|....+--+
T Consensus 69 G~~ItTiEGl~~~~~~l~~vQ~Af~e~~~~QC 100 (156)
T COG2080 69 GAEITTIEGLAKKDGGLHPVQQAFLEHDAFQC 100 (156)
T ss_pred CCeEEEeecccCCCCCcCHHHHHHHHcCCCcC
Confidence 478999999995 6667888888877655433
No 80
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=26.66 E-value=37 Score=25.25 Aligned_cols=24 Identities=13% Similarity=0.440 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 93 QRENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 93 ~~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
--+.|.++|...|+ +.++|.+-||
T Consensus 125 RA~aV~~~L~~~Gv-~~~ri~~~g~ 148 (173)
T PRK10802 125 RANAVKMYLQGKGV-SADQISIVSY 148 (173)
T ss_pred HHHHHHHHHHHcCC-CHHHeEEEEe
Confidence 44678899999999 7778887764
No 81
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=25.74 E-value=66 Score=23.60 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=33.5
Q ss_pred cHHHHHHHHhhhcccceEEEecCCC-c---eEEEEcCchhHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 59 DLKKIVRACKKEFACNGTVIEHPEY-G---EVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 59 dlk~laK~lKk~~acggsv~~~~~~-~---~~I~lQGD~~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
.|+.+++.|++-=...-.|....+. | ....|.=---+.|+++|.+.|+.+. .|.+-|+
T Consensus 101 ~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~Gv~~~-~i~~~G~ 162 (190)
T COG2885 101 TLDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQGVVAD-RISTVGY 162 (190)
T ss_pred HHHHHHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHcCCCcc-cEEEEEc
Confidence 3677777777655333334332211 1 1222322234568899999999544 8888775
No 82
>PRK04021 hypothetical protein; Reviewed
Probab=25.36 E-value=2.2e+02 Score=19.22 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=33.5
Q ss_pred cccHHHHHHHHhhhcccceEEEecC-CCceEEEEcCchhHHHHHHH
Q psy14756 57 EYDLKKIVRACKKEFACNGTVIEHP-EYGEVLQLQGDQRENICQWL 101 (117)
Q Consensus 57 ~~dlk~laK~lKk~~acggsv~~~~-~~~~~I~lQGD~~~~v~~~L 101 (117)
+--=+++.+.|.+.|++.-++..+. +....+.|.|--.+.+.+.|
T Consensus 45 GkAN~ali~~LAk~l~~~I~I~~G~~sr~K~v~i~g~~~e~l~~~L 90 (92)
T PRK04021 45 GKANKELVKFFSKLLGAEVEIIRGETSREKDLLVKGISLEEVKKKL 90 (92)
T ss_pred ChHHHHHHHHHHHHhCCCEEEEecCCcCceEEEEecCCHHHHHHHh
Confidence 3345788889999999877776543 33579999998788877766
No 83
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=24.17 E-value=58 Score=20.65 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=13.0
Q ss_pred HHHHHHHcCCCCCCCeEEcC
Q psy14756 97 ICQWLTKTGLAKPEQLKVHG 116 (117)
Q Consensus 97 v~~~L~~~G~~p~~~I~ihg 116 (117)
|.+.|.++|+.+.+.|.|.+
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~ 64 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGD 64 (69)
T ss_dssp HHHHHHTTT--TT-EEEETT
T ss_pred HHHHHHHcCCCCCCEEEEcC
Confidence 56678888888888888765
No 84
>PHA01548 hypothetical protein
Probab=23.99 E-value=34 Score=25.52 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=14.5
Q ss_pred CceEEEEEEEecCCceEEE
Q psy14756 32 DGLVHIRIQQRNGRKTLTT 50 (117)
Q Consensus 32 ~~~I~I~~e~R~grK~VT~ 50 (117)
...|......|+|+|+.|+
T Consensus 145 l~iVp~evKtrkGfktlTl 163 (167)
T PHA01548 145 LAIVPGEVKTRKGFKTLTL 163 (167)
T ss_pred eeEEEEEeeccCCeeEEEE
Confidence 4456667788899999886
No 85
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=23.91 E-value=1.4e+02 Score=22.50 Aligned_cols=54 Identities=19% Similarity=0.417 Sum_probs=30.0
Q ss_pred ceEEEEecCCCcccHHHHHHHHhh-hcccceEEEecCCCceEEEEcCchhHHHH---HHHHHcC
Q psy14756 46 KTLTTVQGLSSEYDLKKIVRACKK-EFACNGTVIEHPEYGEVLQLQGDQRENIC---QWLTKTG 105 (117)
Q Consensus 46 K~VT~V~GL~~~~dlk~laK~lKk-~~acggsv~~~~~~~~~I~lQGD~~~~v~---~~L~~~G 105 (117)
..+|+.+|++.+ ..+++.|.+|. ++=..+++.. ++|-|.|-.|+.+. .+|.+..
T Consensus 92 q~i~lk~GI~~d-~AKkIvK~IKd~klKVqa~IQg-----d~vRVtgKkrDDLQ~viallk~~d 149 (160)
T PF04461_consen 92 QVIKLKQGIDQD-TAKKIVKLIKDSKLKVQAQIQG-----DQVRVTGKKRDDLQEVIALLKEQD 149 (160)
T ss_dssp EEEEE--S--HH-HHHHHHHHHHHH--SEEEEEET-----TEEEEEES-HHHHHHHHHHHHHS-
T ss_pred EEEEeecccCHH-HHHHHHHHHHhcCCceeEEecC-----cEEEEecCCHHHHHHHHHHHHccc
Confidence 589999999972 35566655553 2335566664 58888888777655 4666653
No 86
>PF15538 Toxin_61: Putative toxin 61
Probab=23.47 E-value=44 Score=25.13 Aligned_cols=35 Identities=17% Similarity=0.425 Sum_probs=29.4
Q ss_pred HHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCCC
Q psy14756 66 ACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLA 107 (117)
Q Consensus 66 ~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~~ 107 (117)
.|-++|+=+|.+.. .|-|.|+. +.+.+|+.+.|+.
T Consensus 4 yln~kfgrtg~l~~------dinirgn~-e~a~~F~~s~G~~ 38 (157)
T PF15538_consen 4 YLNEKFGRTGDLNH------DINIRGNR-EIASDFFKSQGLT 38 (157)
T ss_pred Hhhhhhcccccccc------ceeeccch-HHHHHHHHHcCCC
Confidence 57789999999886 59999985 7788899999993
No 87
>KOG1143|consensus
Probab=23.19 E-value=2.2e+02 Score=25.10 Aligned_cols=47 Identities=13% Similarity=0.289 Sum_probs=35.6
Q ss_pred HHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCCCCCCCeEE
Q psy14756 64 VRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 64 aK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~~p~~~I~i 114 (117)
++.+..+++.+.+|-.. .+|...||-+..|.+.|..+=--...+|++
T Consensus 122 L~~MA~~lGAs~~vLre----k~v~~~~~~~R~v~EVLVRKvPd~Qqfiev 168 (591)
T KOG1143|consen 122 LRTMAQALGASMVVLRE----KDVTVKGSSRRTVVEVLVRKVPDSQQFIEV 168 (591)
T ss_pred HHHHHHHhCCceEEEEe----eeeeccCCCcchhhhhhhhhCCCcccceEE
Confidence 35667788899888764 689999999999999998762224455654
No 88
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=23.09 E-value=1.4e+02 Score=20.47 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.6
Q ss_pred CCceEEEEEEEecCCceEEEE
Q psy14756 31 QDGLVHIRIQQRNGRKTLTTV 51 (117)
Q Consensus 31 ~~~~I~I~~e~R~grK~VT~V 51 (117)
..+-+.+....|=++|.||+|
T Consensus 75 k~~v~al~~T~Ryk~KyVT~v 95 (100)
T PF04739_consen 75 KDGVLALGTTHRYKSKYVTTV 95 (100)
T ss_dssp BTTEEEEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEEEEecceEEEEE
Confidence 455788888999888999998
No 89
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=22.92 E-value=86 Score=21.90 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=16.5
Q ss_pred hHHHHHHHHHcCCCCCCCeEEc
Q psy14756 94 RENICQWLTKTGLAKPEQLKVH 115 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ih 115 (117)
.+.++++|.++|+ |.+.|.+.
T Consensus 25 A~Al~~~L~~~gI-~Gk~i~l~ 45 (100)
T PF15643_consen 25 ASALKQFLKQAGI-PGKIIRLY 45 (100)
T ss_pred HHHHHHHHHHCCC-CceEEEEE
Confidence 4678889999999 88777763
No 90
>cd00367 PTS-HPr_like Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate is transferred to HPr by enzyme I (EI). Phospho-HPr then transfers the phosphoryl group to one of several sugar-specific phosphoprotein intermediates. The conserved histidine in the N-terminus of HPr serves as an acceptor for the phosphoryl group of EI. In addition to the phosphotransferase proteins HPr and E1, this family also includes the closely related Carbon Catabolite Repressor (CCR) proteins which use the same phosphorylation mechanism and interact with transcriptional regulators to control expression of genes coding for utilization of less favored carbon sources.
Probab=22.55 E-value=2.1e+02 Score=17.89 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=31.1
Q ss_pred eEEEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 47 TLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 47 ~VT~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|++..+ ....|.+.+..-+.=...+|..+ +|.+.|+--+.+.+.|.+
T Consensus 28 ~v~i~~~-~~~vdakSil~i~~L~~~~G~~i--------~i~~~G~de~~al~~l~~ 75 (77)
T cd00367 28 DITLRKG-GRKANAKSILGLMSLGAKQGDEI--------TLSAEGEDAEEALEALAE 75 (77)
T ss_pred EEEEEEC-CEEEcHHhHHHHHHcCCCCCCEE--------EEEEECcCHHHHHHHHHH
Confidence 4555443 22467777777777666666655 477788877777776654
No 91
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=22.18 E-value=81 Score=19.28 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=21.0
Q ss_pred EEEcCchhHHHHHHHHHcCCCCCCCeEEc
Q psy14756 87 LQLQGDQRENICQWLTKTGLAKPEQLKVH 115 (117)
Q Consensus 87 I~lQGD~~~~v~~~L~~~G~~p~~~I~ih 115 (117)
..|.. .-..+..+|.+.|+.|...|++.
T Consensus 15 ~~i~~-~d~~~~~~L~~lGl~~G~~i~v~ 42 (74)
T PF04023_consen 15 VRISD-EDPELLRRLADLGLTPGSEITVI 42 (74)
T ss_dssp EEEST-SSHHHHHHHHHCT-STTEEEEEE
T ss_pred EEEEC-CCHHHHHHHHHCCCCCCCEEEEE
Confidence 34443 35789999999999999998875
No 92
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=21.88 E-value=87 Score=17.85 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCCCCCCeEEcC
Q psy14756 95 ENICQWLTKTGLAKPEQLKVHG 116 (117)
Q Consensus 95 ~~v~~~L~~~G~~p~~~I~ihg 116 (117)
+.+.+|+... .|+.-|-|||
T Consensus 21 ~~L~~~i~~~--~p~~vilVHG 40 (43)
T PF07521_consen 21 EELLEFIEQL--NPRKVILVHG 40 (43)
T ss_dssp HHHHHHHHHH--CSSEEEEESS
T ss_pred HHHHHHHHhc--CCCEEEEecC
Confidence 4455555554 2555666666
No 93
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.47 E-value=1.2e+02 Score=17.96 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=17.0
Q ss_pred eEEEEcC-chhHHHHHHHHHcCC
Q psy14756 85 EVLQLQG-DQRENICQWLTKTGL 106 (117)
Q Consensus 85 ~~I~lQG-D~~~~v~~~L~~~G~ 106 (117)
..+.++. ++.+++.+.|.++|+
T Consensus 45 ~~i~v~~~~~~~~~~~~L~~~G~ 67 (69)
T cd04909 45 LRISFKTQEDRERAKEILKEAGY 67 (69)
T ss_pred EEEEECCHHHHHHHHHHHHHcCC
Confidence 3556643 578899999999998
No 94
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=21.21 E-value=1.9e+02 Score=16.88 Aligned_cols=37 Identities=8% Similarity=0.168 Sum_probs=26.5
Q ss_pred HHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHH
Q psy14756 63 IVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 101 (117)
Q Consensus 63 laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L 101 (117)
..+++.+.++|.-.+.+++ ....|.|.| ..+.+.+.+
T Consensus 21 ~i~~I~~~t~~~I~i~~~~-~~~~v~I~G-~~~~v~~A~ 57 (60)
T PF00013_consen 21 NIKEIEEETGVKIQIPDDD-ERDIVTISG-SPEQVEKAK 57 (60)
T ss_dssp HHHHHHHHHTSEEEEESTT-EEEEEEEEE-SHHHHHHHH
T ss_pred cHHHhhhhcCeEEEEcCCC-CcEEEEEEe-CHHHHHHHH
Confidence 4577888889998887642 235899999 667666654
No 95
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=20.10 E-value=82 Score=19.51 Aligned_cols=23 Identities=30% Similarity=0.736 Sum_probs=18.5
Q ss_pred eEEEEcCchhHHHHHHHHHcCCCCCCCeEE
Q psy14756 85 EVLQLQGDQRENICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 85 ~~I~lQGD~~~~v~~~L~~~G~~p~~~I~i 114 (117)
-+|.|+|+ ||++.||.+.+.+.|
T Consensus 24 p~i~L~G~-------WL~~aGF~~G~~v~V 46 (57)
T PF08845_consen 24 PEIRLKGK-------WLEEAGFTIGDPVKV 46 (57)
T ss_pred ceEEEchh-------hhHHhCCCCCCEEEE
Confidence 48999996 688899987777765
No 96
>cd00105 KH-I K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is folded into a beta alpha alpha beta unit. In addition to the core, type II KH domains (e.g. ribosomal protein S3) include N-terminal extension and type I KH domains (e.g. hnRNP K) contain C-terminal extension.
Probab=20.06 E-value=1.9e+02 Score=16.63 Aligned_cols=37 Identities=8% Similarity=0.182 Sum_probs=24.9
Q ss_pred HHHHHhhhcccceEEEecC--CCceEEEEcCchhHHHHHH
Q psy14756 63 IVRACKKEFACNGTVIEHP--EYGEVLQLQGDQRENICQW 100 (117)
Q Consensus 63 laK~lKk~~acggsv~~~~--~~~~~I~lQGD~~~~v~~~ 100 (117)
..+.++..++|.-.+.+.. .....+.+.|. .+.+...
T Consensus 21 ~i~~I~~~s~~~I~i~~~~~~~~~~~v~i~G~-~~~v~~a 59 (64)
T cd00105 21 TIKEIREETGAKIKIPDSGSGSEERIVTITGT-PEAVEKA 59 (64)
T ss_pred HHHHHHHHHCCEEEEcCCCCCCCceEEEEEcC-HHHHHHH
Confidence 3466777778888887753 23478999999 3555443
Done!