Query psy14756
Match_columns 117
No_of_seqs 130 out of 844
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 19:50:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ogh_A Eukaryotic translation 100.0 6.6E-39 2.3E-43 224.1 12.1 106 10-117 1-108 (108)
2 2if1_A EIF1, SUI1; translation 100.0 2.9E-38 9.8E-43 226.3 7.9 110 8-117 13-126 (126)
3 2xzm_F EIF1; ribosome, transla 100.0 9.6E-34 3.3E-38 196.1 11.1 87 31-117 15-101 (101)
4 1d1r_A Hypothetical 11.4 KD pr 99.9 1.6E-25 5.5E-30 158.2 5.1 80 26-112 24-106 (116)
5 1gxu_A Hydrogenase maturation 94.5 0.23 8E-06 32.5 7.6 55 50-106 12-66 (91)
6 1urr_A CG18505 protein; acylph 93.5 0.38 1.3E-05 32.0 7.3 57 50-106 16-74 (102)
7 2d74_B Translation initiation 93.3 0.096 3.3E-06 37.7 4.3 61 32-102 32-97 (148)
8 1k8b_A EIF-2-beta, probable tr 93.1 0.087 3E-06 31.7 3.2 44 42-92 4-52 (52)
9 2vh7_A Acylphosphatase-1; hydr 93.0 0.5 1.7E-05 31.2 7.3 57 50-106 13-71 (99)
10 1ulr_A Putative acylphosphatas 92.6 0.72 2.5E-05 29.8 7.4 55 50-105 7-63 (88)
11 1nee_A EIF-2-beta, probable tr 91.1 0.068 2.3E-06 38.1 1.2 60 33-102 31-95 (138)
12 1w2i_A Acylphosphatase; hydrol 90.6 0.86 2.9E-05 29.6 6.2 53 50-103 9-61 (91)
13 2fhm_A Probable acylphosphatas 89.6 1.7 5.9E-05 28.0 7.0 52 50-102 7-58 (91)
14 2lxf_A Uncharacterized protein 89.0 4.1 0.00014 28.0 10.4 51 51-102 40-90 (121)
15 2gv1_A Probable acylphosphatas 87.8 1.2 4.2E-05 28.9 5.3 56 50-105 9-66 (92)
16 1aps_A Acylphosphatase; hydrol 87.5 0.4 1.4E-05 31.6 2.8 53 50-103 12-64 (98)
17 3trg_A Acylphosphatase; fatty 87.4 2 6.7E-05 28.3 6.2 53 50-103 17-69 (98)
18 2bjd_A Acylphosphatase; hypert 86.2 2 6.7E-05 28.5 5.7 53 50-103 19-71 (101)
19 2e9h_A EIF-5, eukaryotic trans 84.9 0.65 2.2E-05 33.7 3.0 66 33-102 26-96 (157)
20 4hhu_A OR280; engineered prote 77.2 9.4 0.00032 27.0 6.7 61 43-103 39-103 (170)
21 3cw2_K Translation initiation 73.0 0.12 4.1E-06 36.8 -4.1 54 42-101 37-95 (139)
22 2g2k_A EIF-5, eukaryotic trans 72.4 0.86 3E-05 33.5 0.3 67 32-102 18-89 (170)
23 3vth_A Hydrogenase maturation 66.1 15 0.00052 32.3 6.9 56 50-106 15-72 (761)
24 2hqs_H Peptidoglycan-associate 52.7 7.7 0.00026 25.6 2.2 23 94-117 63-85 (118)
25 3e19_A FEOA; transcriptional r 48.2 21 0.00071 21.6 3.5 29 85-115 17-45 (77)
26 2aiz_P Outer membrane protein 47.8 10 0.00034 25.8 2.2 23 94-117 87-109 (134)
27 3cyp_B Chemotaxis protein MOTB 45.5 11 0.00039 25.4 2.2 23 94-117 66-88 (138)
28 2kgw_A Outer membrane protein 44.4 11 0.00037 25.2 1.8 23 94-117 81-103 (129)
29 2lx9_A Ferrous iron transport 43.2 25 0.00085 22.0 3.4 29 86-114 11-39 (83)
30 4ici_A Putative flavoprotein; 41.1 61 0.0021 22.3 5.5 55 43-106 116-170 (171)
31 3ldt_A Outer membrane protein, 40.4 24 0.00083 24.7 3.3 58 59-117 72-133 (169)
32 4erh_A Outer membrane protein 39.1 12 0.00041 25.4 1.4 23 94-117 81-103 (148)
33 8tfv_A Protein (thanatin); bac 38.7 10 0.00036 18.3 0.7 13 2-14 8-20 (21)
34 2h3j_A Hypothetical protein PA 38.5 29 0.001 20.5 3.1 29 86-114 12-40 (75)
35 2k5l_A FEOA; structure, NESG, 38.4 50 0.0017 20.1 4.2 27 86-114 15-41 (81)
36 3a4r_A Nfatc2-interacting prot 37.1 49 0.0017 20.2 4.0 78 29-116 2-79 (79)
37 3oon_A Outer membrane protein 36.7 19 0.00063 23.6 2.1 23 95-117 75-97 (123)
38 1r1m_A Outer membrane protein 36.6 19 0.00064 25.4 2.2 23 94-117 72-94 (164)
39 2qsw_A Methionine import ATP-b 36.2 79 0.0027 19.9 5.1 22 85-106 69-92 (100)
40 3ced_A Methionine import ATP-b 34.8 62 0.0021 20.6 4.4 46 61-106 34-90 (98)
41 3s06_A Motility protein B; pep 34.1 17 0.00059 25.2 1.6 24 93-117 93-116 (166)
42 2k1s_A Inner membrane lipoprot 33.8 19 0.00066 24.5 1.8 23 94-117 91-113 (149)
43 3dzc_A UDP-N-acetylglucosamine 32.5 52 0.0018 25.5 4.3 60 43-112 23-83 (396)
44 2gcx_A FEOA, ferrous iron tran 32.2 21 0.00071 21.4 1.6 29 86-114 11-39 (75)
45 4g9i_A Hydrogenase maturation 30.3 65 0.0022 28.3 4.9 54 50-103 7-62 (772)
46 3s0y_A Motility protein B; pep 29.9 27 0.00094 24.9 2.2 25 92-117 119-143 (193)
47 2f9f_A First mannosyl transfer 29.2 1.2E+02 0.0043 19.9 5.6 62 44-117 22-85 (177)
48 3td3_A Outer membrane protein 28.9 32 0.0011 22.4 2.2 58 59-117 32-94 (123)
49 2nlv_A XISI protein-like; XISI 28.7 29 0.00098 23.6 1.9 28 86-114 68-96 (112)
50 2nwv_A XISI protein-like; YP_3 27.7 31 0.001 23.6 1.9 28 86-114 70-98 (114)
51 3d7q_A XISI protein-like; stru 27.2 29 0.00098 23.6 1.7 28 86-114 68-96 (112)
52 2k5f_A Ferrous iron transport 27.0 1E+02 0.0035 20.0 4.5 27 86-114 14-40 (105)
53 2k4y_A FEOA-like protein; GFT 26.1 90 0.0031 19.2 3.9 27 86-114 18-44 (86)
54 3mhx_A Putative ferrous iron t 26.0 44 0.0015 20.5 2.4 29 86-114 15-44 (85)
55 2gx5_A GTP-sensing transcripti 26.0 68 0.0023 23.1 3.7 50 57-106 31-81 (170)
56 2qrr_A Methionine import ATP-b 24.9 1.1E+02 0.0039 19.2 4.3 22 85-106 69-92 (101)
57 3dhx_A Methionine import ATP-b 24.9 1.1E+02 0.0038 19.6 4.3 22 85-106 67-90 (106)
58 3khn_A MOTB protein, putative; 24.5 32 0.0011 24.1 1.6 23 94-117 113-135 (174)
59 2diu_A KIAA0430 protein; struc 22.5 89 0.003 20.5 3.4 52 50-103 13-65 (96)
60 2zf8_A MOTY, component of sodi 22.4 39 0.0013 25.9 1.8 24 93-117 219-242 (278)
61 3hrs_A Metalloregulator SCAR; 22.3 1.4E+02 0.0047 21.3 4.8 27 86-114 154-180 (214)
62 2l26_A Uncharacterized protein 22.0 50 0.0017 25.2 2.4 23 94-117 228-250 (284)
63 1in0_A YAJQ protein, HI1034; a 21.4 96 0.0033 22.4 3.7 54 46-105 94-151 (163)
64 3klb_A Putative flavoprotein; 20.9 1.3E+02 0.0045 20.2 4.3 38 62-106 124-162 (162)
65 1lvm_A Catalytic domain of the 20.6 1.8E+02 0.0062 21.9 5.2 73 9-83 92-169 (229)
66 2zvy_A Chemotaxis protein MOTB 20.5 72 0.0025 22.7 2.9 24 93-117 120-144 (183)
67 1k8r_B Protein kinase BYR2; si 20.4 95 0.0032 20.8 3.2 28 86-113 14-42 (110)
No 1
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-39 Score=224.11 Aligned_cols=106 Identities=50% Similarity=0.943 Sum_probs=98.6
Q ss_pred eeccC--CCCccccccCCCCCCCCCceEEEEEEEecCCceEEEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEE
Q psy14756 10 GRCQK--TLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVL 87 (117)
Q Consensus 10 ~~~~~--~f~p~~~~~~~~~~~~~~~~I~I~~e~R~grK~VT~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I 87 (117)
|++|| +||||++. .|+.+++.++|+|++++|+|||+||+|+||+.++|+++|||+||++|||||||+++++++.+|
T Consensus 1 m~~~~~~~~dpf~~~--~~~~~~~~~~V~Ir~~~R~g~K~VT~V~Gl~~~~dlk~lak~lKkk~acggsV~~~~~~g~~I 78 (108)
T 2ogh_A 1 MSIENLKSFDPFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEII 78 (108)
T ss_dssp CCSSCCSCCCCCCCC--CCCCCCCSCSEEEEEECCSSSCCEEEEECCCTTSCHHHHHHHHHHHHCCCEEEECCTTSSCEE
T ss_pred CcccccCCCCccccc--cccccCCCCeEEEEEEEccCCceEEEEeCCCcchhHHHHHHHHHHHhcCceEEecCCCCceEE
Confidence 45666 99999987 344578899999999999999999999999988899999999999999999999998888999
Q ss_pred EEcCchhHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 88 QLQGDQRENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 88 ~lQGD~~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
+||||||++|.+||.++|++|+++|+||||
T Consensus 79 ~iQGD~r~~v~~~L~~~g~~~~~~I~vhg~ 108 (108)
T 2ogh_A 79 QLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108 (108)
T ss_dssp EEESSCHHHHHHHHHHHHTSCCSCEEECCC
T ss_pred EEcCCHHHHHHHHHHHcCCCCHHHEEEcCC
Confidence 999999999999999999999999999998
No 2
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=100.00 E-value=2.9e-38 Score=226.28 Aligned_cols=110 Identities=67% Similarity=1.060 Sum_probs=101.5
Q ss_pred ceeeccC--CCCccccccCCC--CCCCCCceEEEEEEEecCCceEEEEecCCCcccHHHHHHHHhhhcccceEEEecCCC
Q psy14756 8 LVGRCQK--TLDPFADAFKGS--EDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEY 83 (117)
Q Consensus 8 ~~~~~~~--~f~p~~~~~~~~--~~~~~~~~I~I~~e~R~grK~VT~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~ 83 (117)
-.|++|| +||||+++..++ ..+++.++|+|++++|+|||+||+|+||+.++|+++|||+||++|||||||++++++
T Consensus 13 ~~~~~~~~~~fdpfa~~~~~~~~~~~g~~~~V~Ir~~~R~grK~VT~V~GL~~~~dlk~laK~LKkk~acgGtVk~~~e~ 92 (126)
T 2if1_A 13 PMSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEY 92 (126)
T ss_dssp GGGGCSCCCCCCTTSSCCCCSSCCSCSCTTCEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHTCCCEEEECCTTT
T ss_pred chhhcccCCCCCchhhhccccccccCCCCCeEEEEEEeecCCccEEEEeCCCCchhHHHHHHHHHHHhcCCeEEecCCCC
Confidence 4567888 999999976555 346889999999999999999999999998889999999999999999999998888
Q ss_pred ceEEEEcCchhHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 84 GEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 84 ~~~I~lQGD~~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
+.+|+||||||++|.+||.++|+.|+++|+||||
T Consensus 93 g~~I~IQGD~r~~I~~~L~~~G~~~~~~I~vhgf 126 (126)
T 2if1_A 93 GEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126 (126)
T ss_dssp SSEEEESBCCHHHHHHHHHHHTSSCTTTEECCCC
T ss_pred ccEEEEcCCHHHHHHHHHHHcCCCChhhEEeeCC
Confidence 8999999999999999999999999999999998
No 3
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=100.00 E-value=9.6e-34 Score=196.06 Aligned_cols=87 Identities=40% Similarity=0.750 Sum_probs=84.2
Q ss_pred CCceEEEEEEEecCCceEEEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCCCCCC
Q psy14756 31 QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPE 110 (117)
Q Consensus 31 ~~~~I~I~~e~R~grK~VT~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~~p~~ 110 (117)
+.++|+|++++|+|||.||+|+||+.++|+++|||+||++|||||||+++++++.+|+||||||++|.+||.++|++|++
T Consensus 15 ~~~~v~I~~~~R~g~K~VT~V~Gl~~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~G~~~~~ 94 (101)
T 2xzm_F 15 FQTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEEGIAAVD 94 (101)
T ss_dssp CSCCEEEEEEEEETTEEEEEEECCCTTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHHSSSCTT
T ss_pred CCCeEEEEEEeccCCccEEEEecCCCchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHcCCCCHH
Confidence 57899999999999999999999998889999999999999999999999888899999999999999999999999999
Q ss_pred CeEEcCC
Q psy14756 111 QLKVHGF 117 (117)
Q Consensus 111 ~I~ihg~ 117 (117)
+|+||||
T Consensus 95 ~I~vhg~ 101 (101)
T 2xzm_F 95 NITIHGI 101 (101)
T ss_dssp TEEECCC
T ss_pred HEEEcCC
Confidence 9999998
No 4
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=99.91 E-value=1.6e-25 Score=158.17 Aligned_cols=80 Identities=30% Similarity=0.524 Sum_probs=69.6
Q ss_pred CCCCCCCceEEEEEEEecCC--ceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHH
Q psy14756 26 SEDDVQDGLVHIRIQQRNGR--KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 102 (117)
Q Consensus 26 ~~~~~~~~~I~I~~e~R~gr--K~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~ 102 (117)
+++|++.++|+|+++ |+|| |.||+|+||+. ++|+++|||+||++|||||||++ ++|+||||||++|.+||.
T Consensus 24 ~~~p~~~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtVk~-----~~IeiQGD~r~~i~~~L~ 97 (116)
T 1d1r_A 24 PVRPKGDGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLE 97 (116)
T ss_dssp ----CCCCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCS-----SCEEECSCCHHHHHHHHH
T ss_pred cCCCCCCCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEEcC-----CEEEEeCcHHHHHHHHHH
Confidence 446788999999999 7777 99999999998 99999999999999999999997 499999999999999999
Q ss_pred HcCCCCCCCe
Q psy14756 103 KTGLAKPEQL 112 (117)
Q Consensus 103 ~~G~~p~~~I 112 (117)
++|| +..+|
T Consensus 98 ~~G~-~vk~i 106 (116)
T 1d1r_A 98 AKGM-KVKLA 106 (116)
T ss_dssp HHTC-EECCC
T ss_pred HcCC-Cccee
Confidence 9998 44333
No 5
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=94.48 E-value=0.23 Score=32.47 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=46.0
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 106 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~ 106 (117)
.|+|.=.++-.-..+..+-++++-.|.|...+++ -+|++||+- +...++|.+.|-
T Consensus 12 ~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG-Vei~~eG~~-~~f~~~l~~~~P 66 (91)
T 1gxu_A 12 RIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDG-VEVRLREDP-EVFLVQLYQHCP 66 (91)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCCEEEEECSSS-EEEEESSCC-HHHHHHHHHTCC
T ss_pred EEEEeeCCcCHHHHHHHHHHHcCCeEEEEECCCc-EEEEEEECH-HHHHHHHhhCCC
Confidence 4777766777888888888899999999998776 899999999 888888887653
No 6
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=93.53 E-value=0.38 Score=31.98 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=44.7
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCch--hHHHHHHHHHcCC
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTGL 106 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~--~~~v~~~L~~~G~ 106 (117)
.|+|.=.++-+-..+..+-++++-.|.|...+++.-+|++||+. .+...++|...|-
T Consensus 16 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~gP 74 (102)
T 1urr_A 16 EIFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNRI 74 (102)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCCS
T ss_pred EEEEeECCcChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcCC
Confidence 37777667778888888889999999999987777899999986 4556666665553
No 7
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=93.32 E-value=0.096 Score=37.75 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=46.3
Q ss_pred CceEEEEEEEecCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHH
Q psy14756 32 DGLVHIRIQQRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 102 (117)
Q Consensus 32 ~~~I~I~~e~R~grK~VT~V~GL~~-----~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~ 102 (117)
.++..+.++ |+| |++.||.+ .=+++-++|.|...+|+.|++.. +...|+|.+..+-.+-+.
T Consensus 32 mP~~~v~~e---GkK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~-----~rlii~G~~~~~~i~~~L 97 (148)
T 2d74_B 32 VPGALVTIE---GNK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLEG-----RRVVLQGRFTPYLIANKL 97 (148)
T ss_dssp CCCCCEEEE---TTE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEET-----TEEEESSCCCHHHHHHHH
T ss_pred cCCCeEEEe---cCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecC-----CEEEEEeeeCHHHHHHHH
Confidence 334445444 654 99999886 23688999999999999999983 489999999877666444
No 8
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=93.12 E-value=0.087 Score=31.67 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=36.1
Q ss_pred ecCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCc
Q psy14756 42 RNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGD 92 (117)
Q Consensus 42 R~grK~VT~V~GL~~-----~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD 92 (117)
|-|+| |++.||.+ .=+++-++|.|.+.+++.|++.. ....|+|.
T Consensus 4 ~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id~-----~rlii~G~ 52 (52)
T 1k8b_A 4 IEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEG-----GRLILQRR 52 (52)
T ss_dssp EETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEET-----TEEEEECC
T ss_pred EEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeecC-----CEEEEeCC
Confidence 55777 99999986 23789999999999999999983 47888873
No 9
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=93.03 E-value=0.5 Score=31.19 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=44.5
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCch--hHHHHHHHHHcCC
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTGL 106 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~--~~~v~~~L~~~G~ 106 (117)
.|+|.=.++-+-..+..+-++++-.|.|...+++.-+|++||+. .+...++|.+.|-
T Consensus 13 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~~~p 71 (99)
T 2vh7_A 13 EIFGKVQGVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRGS 71 (99)
T ss_dssp EEEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHTCS
T ss_pred EEEEeeCCcChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcCC
Confidence 47777667778888889999999999999987777899999986 3455666655553
No 10
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=92.60 E-value=0.72 Score=29.75 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=43.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCch--hHHHHHHHHHcC
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTG 105 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~--~~~v~~~L~~~G 105 (117)
.|+|.=.++-+-..+..+-++++-.|.|...+++.-+|++||+. .+...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~-~g 63 (88)
T 1ulr_A 7 LVKGRVQGVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK-QG 63 (88)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH-HC
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH-hC
Confidence 46776667778888888999999999999887777999999986 345555665 44
No 11
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=91.06 E-value=0.068 Score=38.08 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=45.7
Q ss_pred ceEEEEEEEecCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHH
Q psy14756 33 GLVHIRIQQRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 102 (117)
Q Consensus 33 ~~I~I~~e~R~grK~VT~V~GL~~-----~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~ 102 (117)
++..+.++ |+| |++.||.+ .=+++-++|.|...+|+.|++.. +...|+|.|..+-.+-+.
T Consensus 31 p~~~v~~e---G~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~-----~rlii~G~~~~~~i~~~L 95 (138)
T 1nee_A 31 PKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLEG-----GRAILQGKFTHFLINERI 95 (138)
T ss_dssp SCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCBT-----TTEEEESSCSSSHHHHHH
T ss_pred CCCeEEEE---CCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecC-----CEEEEEeeeCHHHHHHHH
Confidence 34444444 776 99999986 23789999999999999999983 479999999876655443
No 12
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=90.58 E-value=0.86 Score=29.59 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=41.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+-..+..+-++++-.|.|...+++.-+|++||+... |.+|+..
T Consensus 9 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-v~~f~~~ 61 (91)
T 1w2i_A 9 KIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEER-VEALIGW 61 (91)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHH-HHHHHHH
T ss_pred EEEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHH-HHHHHHH
Confidence 4777766777888888888899999999998777799999998642 4444443
No 13
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=89.56 E-value=1.7 Score=28.01 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=40.9
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 102 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~ 102 (117)
.|+|.=.++-+-..+..+-++++-.|.|...+++.-+|++||+.. .|.+|+.
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~-~i~~f~~ 58 (91)
T 2fhm_A 7 IVDGRVQGVGFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPEN-ALQSFVE 58 (91)
T ss_dssp EEEEECCSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHH-HHHHHHH
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHH
Confidence 467766677788888888999999999999877779999999863 3444443
No 14
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=89.05 E-value=4.1 Score=28.04 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=39.5
Q ss_pred EecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHH
Q psy14756 51 VQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 102 (117)
Q Consensus 51 V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~ 102 (117)
|+|.-.++-+-..+..+-++++-.|.|...+++.-+|++||+- +.|.+|+.
T Consensus 40 V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~-~~v~~f~~ 90 (121)
T 2lxf_A 40 VTGKVQGVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPK-EQVDAFVK 90 (121)
T ss_dssp EEECTTCCCCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEH-HHHHHHHH
T ss_pred EEEeeCCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECH-HHHHHHHH
Confidence 6677666667778888888899999999987777899999974 44444443
No 15
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=87.76 E-value=1.2 Score=28.86 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=38.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCch--hHHHHHHHHHcC
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTG 105 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~--~~~v~~~L~~~G 105 (117)
.|+|.=.++-+-..+..+-++++-.|.|...+++.-+|++||+. .+...++|...|
T Consensus 9 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~~g 66 (92)
T 2gv1_A 9 WVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 66 (92)
T ss_dssp EEEEECTTTTCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHHHHTS
T ss_pred EEEEeeCCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHhhccC
Confidence 35665544445555666666778999999887767899999986 345555553345
No 16
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=87.50 E-value=0.4 Score=31.59 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=38.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+-..+..+-++++-.|.|...+++.-+|++||+.. .|.+|+..
T Consensus 12 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~l~~f~~~ 64 (98)
T 1aps_A 12 EVFGRVQGVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEE-KVNSMKSW 64 (98)
T ss_dssp EEECTTSCCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHH-HHHHHHHS
T ss_pred EEEEEECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHH
Confidence 366766655566667777777899999998777668999999863 35555543
No 17
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=87.41 E-value=2 Score=28.34 Aligned_cols=53 Identities=21% Similarity=0.147 Sum_probs=42.0
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.-.++-+-..+..+-++++-.|.|...+++.-+|++||+- +.|.+|+..
T Consensus 17 ~V~G~VQGVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~-~~l~~f~~~ 69 (98)
T 3trg_A 17 TVSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGER-DSIMILTEW 69 (98)
T ss_dssp EEEEECSSSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEH-HHHHHHHHH
T ss_pred EEEEeECCCCccHHHHHHHHHcCCeEEEEECCCCEEEEEEEECH-HHHHHHHHH
Confidence 46776667778888889999999999999987777899999984 455555544
No 18
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=86.17 E-value=2 Score=28.49 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=41.7
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+|.=.++-+-..+..+-++++-.|.|...+++.-+|++||+.. .|.+|+..
T Consensus 19 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~i~~f~~~ 71 (101)
T 2bjd_A 19 RVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEE-ALSKLLER 71 (101)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHH-HHHHHHHH
T ss_pred EEEEeECCcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHH
Confidence 477877777788888899999999999999877779999999863 35455443
No 19
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.94 E-value=0.65 Score=33.69 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=48.4
Q ss_pred ceEEEEEEEecCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHH
Q psy14756 33 GLVHIRIQQRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 102 (117)
Q Consensus 33 ~~I~I~~e~R~grK~VT~V~GL~~-----~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~ 102 (117)
+++.+.++ -+|+=.-|++.||.+ .=+++-++|.|...+|+.|++.+. ++...|+|.|..+..+-++
T Consensus 26 P~~~v~~e-G~gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~---~~rlii~G~~~~~~i~~~L 96 (157)
T 2e9h_A 26 PRLIAKVE-GKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK---NDRYIVNGSHEANKLQDML 96 (157)
T ss_dssp ECCCEEEC-SSSSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETT---TTEEEEEBCCCHHHHHHHH
T ss_pred CCCeEEEe-ccCCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCC---CCEEEEEeeeCHHHHHHHH
Confidence 34455555 244446688999885 236899999999999999999742 2589999999877666443
No 20
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=77.18 E-value=9.4 Score=27.04 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=45.5
Q ss_pred cCCceEEEEecCCC--cccHHHHHHHHhhhcccceEEEec-CCCc-eEEEEcCchhHHHHHHHHH
Q psy14756 43 NGRKTLTTVQGLSS--EYDLKKIVRACKKEFACNGTVIEH-PEYG-EVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 43 ~grK~VT~V~GL~~--~~dlk~laK~lKk~~acggsv~~~-~~~~-~~I~lQGD~~~~v~~~L~~ 103 (117)
.|+.-+-+|+|.++ .-++.+-|..|++.|.-..+..-- ++.| ..|.+.||-.+.+.+.|.+
T Consensus 39 ~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalke 103 (170)
T 4hhu_A 39 SGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKE 103 (170)
T ss_dssp ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHH
T ss_pred eCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHH
Confidence 58899999999997 445666667789998877665442 2223 6899999999888777755
No 21
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=73.01 E-value=0.12 Score=36.84 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=42.5
Q ss_pred ecCCceEEEEecCCC-c----ccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHH
Q psy14756 42 RNGRKTLTTVQGLSS-E----YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 101 (117)
Q Consensus 42 R~grK~VT~V~GL~~-~----~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L 101 (117)
+-|+| |++.||.+ . =+++-++|.|...+|+.|++.++ +...|+|.|..+-.+-+
T Consensus 37 ~eG~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~~----~rlii~G~~~~~~i~~~ 95 (139)
T 3cw2_K 37 NIGNT--TIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDK----GELVIQGKFSSQVINTL 95 (139)
T ss_dssp CCSSS--CCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSSS----CCCTTTCSCCSCCSCST
T ss_pred EECCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECCC----CeEEEEeeeCHHHHHHH
Confidence 45777 99999996 2 26899999999999999999752 47889999876655433
No 22
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=72.44 E-value=0.86 Score=33.45 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=47.6
Q ss_pred CceEEEEEEEecCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHH
Q psy14756 32 DGLVHIRIQQRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 102 (117)
Q Consensus 32 ~~~I~I~~e~R~grK~VT~V~GL~~-----~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~ 102 (117)
.+++.+.++ -+|+=.-|+|.||.+ .=+++-++|.|...+|+.|++.+. ++...|+|.|.....+-++
T Consensus 18 mP~~~v~~E-G~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~---~~rliinG~~~~~~i~~~L 89 (170)
T 2g2k_A 18 MPRLIAKVE-GKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK---NDRYIVNGSHEANKLQDML 89 (170)
T ss_dssp CCCCCCEEE-SCTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTT---TCCEEEEBCCCHHHHHHHH
T ss_pred CCCCeEEEe-ccCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCC---CCEEEEEeeeCHHHHHHHH
Confidence 344556666 344445688888875 125677888999999999999742 2579999999877666444
No 23
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=66.05 E-value=15 Score=32.32 Aligned_cols=56 Identities=11% Similarity=0.236 Sum_probs=44.3
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCch--hHHHHHHHHHcCC
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTGL 106 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~--~~~v~~~L~~~G~ 106 (117)
.|+|.-.++-+-.++..+-++++-.|.|...+++ .+|++||+. .+...++|.+.|-
T Consensus 15 ~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG-Vei~~eG~~~~l~~f~~~L~~~~P 72 (761)
T 3vth_A 15 NIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSG-LYIEVEGEEKDIEAFIREIKENPP 72 (761)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEECHHHHHHHHHHHHHSCC
T ss_pred EEEEEeCCcCcHHHHHHHHHHcCCeEEEEECCCe-EEEEEEECHHHHHHHHHHHhcCCC
Confidence 5778777788899999999999999999988765 999999985 3455556665553
No 24
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=52.66 E-value=7.7 Score=25.62 Aligned_cols=23 Identities=13% Similarity=0.437 Sum_probs=19.2
Q ss_pred hHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 94 RENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
-+.|+++|.+.|+ |.+.|.+-|+
T Consensus 63 A~aV~~~L~~~Gi-~~~ri~~~g~ 85 (118)
T 2hqs_H 63 ANAVKMYLQGKGV-SADQISIVSY 85 (118)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEe
Confidence 4678999999999 7888988775
No 25
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=48.16 E-value=21 Score=21.57 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=23.7
Q ss_pred eEEEEcCchhHHHHHHHHHcCCCCCCCeEEc
Q psy14756 85 EVLQLQGDQRENICQWLTKTGLAKPEQLKVH 115 (117)
Q Consensus 85 ~~I~lQGD~~~~v~~~L~~~G~~p~~~I~ih 115 (117)
....+.++ ..+..+|.+.|+.|...|++-
T Consensus 17 ~I~~i~~~--~~~~~rL~~lGi~~G~~v~v~ 45 (77)
T 3e19_A 17 IVVNILGG--HNARQKLVSMGLTPGATIQVL 45 (77)
T ss_dssp EEEEECSH--HHHHHHHHTTTCSTTCEEEEE
T ss_pred EEEEEECC--HHHHHHHHHCCCCCCCEEEEE
Confidence 35667776 688999999999999988873
No 26
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=47.82 E-value=10 Score=25.76 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=19.1
Q ss_pred hHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 94 RENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
-+.|+++|.+.|+ |.+.|.+.|+
T Consensus 87 A~aV~~~L~~~Gi-~~~ri~~~g~ 109 (134)
T 2aiz_P 87 ADAVKGYLAGKGV-DAGKLGTVSY 109 (134)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 4678899999999 8888988775
No 27
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=45.47 E-value=11 Score=25.45 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=19.0
Q ss_pred hHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 94 RENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
-+.|+++|.+.|+ |.+.|.+.|+
T Consensus 66 A~aV~~~L~~~Gv-~~~ri~~~g~ 88 (138)
T 3cyp_B 66 AYRVMKVLIQYGV-NPNQLSFSSY 88 (138)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 3568899999999 7888988775
No 28
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=44.40 E-value=11 Score=25.15 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=19.0
Q ss_pred hHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 94 RENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
-+.|+++|.+.|+ +.+.|.+.|+
T Consensus 81 A~aV~~~L~~~Gi-~~~ri~~~g~ 103 (129)
T 2kgw_A 81 AKIVADYLVARGV-AGDHIATVGL 103 (129)
T ss_dssp HHHHHHHHHHHTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 4578899999999 7888988775
No 29
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=43.19 E-value=25 Score=21.97 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=23.8
Q ss_pred EEEEcCchhHHHHHHHHHcCCCCCCCeEE
Q psy14756 86 VLQLQGDQRENICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 86 ~I~lQGD~~~~v~~~L~~~G~~p~~~I~i 114 (117)
...|.|+....+...|.+.|+.|...|++
T Consensus 11 I~~i~~~~~~~~~rrL~~mGl~pG~~V~V 39 (83)
T 2lx9_A 11 ITGFSREISPAYRQKLLSLGMLPGSSFNV 39 (83)
T ss_dssp EEECCSSSCHHHHHHHHHSSCCSSSEEEE
T ss_pred EEEEECCCCHHHHHHHHHCCCCCCCEEEE
Confidence 45677764578899999999999998887
No 30
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=41.07 E-value=61 Score=22.32 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=34.0
Q ss_pred cCCceEEEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy14756 43 NGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 106 (117)
Q Consensus 43 ~grK~VT~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~ 106 (117)
+|++.+..++.-..+ .....+.|++.|. ++.+.+ -+.++|.-.+.|.+||.+.|+
T Consensus 116 ~gk~v~~f~t~g~~~--~g~a~~~l~~~l~-~~~~~~------g~~~~~~~~~~i~~Wl~~~~~ 170 (171)
T 4ici_A 116 KGKTVVPFATSGGSS--IGNSATVLKKTYP-DLNWKE------GRLLNRTDEKAIRAWLDVIAV 170 (171)
T ss_dssp TTSEEEEEEECSSCC--SHHHHHHHHHHST-TSEECC------CEECSSCCHHHHHHHHHHHTC
T ss_pred CcCEEEEEEecCCCC--cchHHHHHHHHcC-CCeecc------CeEecCCCHHHHHHHHHHhCC
Confidence 455555555532221 2344455555554 566654 378899888889999998776
No 31
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=40.41 E-value=24 Score=24.75 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=32.3
Q ss_pred cHHHHHHHHhhhcccceEEEecCCC-c---eEEEEcCchhHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 59 DLKKIVRACKKEFACNGTVIEHPEY-G---EVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 59 dlk~laK~lKk~~acggsv~~~~~~-~---~~I~lQGD~~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
.|+.++..|++.=...-.|.-..+. | ....|.-.--+.|.++|.+.|+ +.+.|.+-|+
T Consensus 72 ~L~~la~~l~~~~~~~i~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv-~~~ri~~~g~ 133 (169)
T 3ldt_A 72 GLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGI-AAKRLKAEGY 133 (169)
T ss_dssp HHHHHHHHHTTCTTSCEEEEEECTTSCCC--CHHHHHHHHHHHHHHHHHTTC-CTTTEEECCT
T ss_pred HHHHHHHHHHhCCCCeEEEEeEeCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 3566777776532222233322111 0 1111222234668999999998 8888998875
No 32
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=39.12 E-value=12 Score=25.42 Aligned_cols=23 Identities=13% Similarity=0.564 Sum_probs=19.3
Q ss_pred hHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 94 RENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
-+.|+++|.+.|+ +.+.|.+.|+
T Consensus 81 A~aV~~~L~~~Gv-~~~ri~~~g~ 103 (148)
T 4erh_A 81 AQSVVDYLISKGI-PSDKISARGM 103 (148)
T ss_dssp HHHHHHHHHTTTC-CGGGEEEEEE
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 3789999999998 7888988774
No 33
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=38.67 E-value=10 Score=18.27 Aligned_cols=13 Identities=46% Similarity=1.329 Sum_probs=10.7
Q ss_pred eEEeecceeeccC
Q psy14756 2 VIYCHNLVGRCQK 14 (117)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (117)
+|||..-.|.||.
T Consensus 8 iiycnrrtgkcqr 20 (21)
T 8tfv_A 8 IIYCNRRTGKCQR 20 (26)
T ss_dssp CEEEEGGGTEEEE
T ss_pred EEEEcCcccceec
Confidence 6899988888873
No 34
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=38.52 E-value=29 Score=20.54 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=22.7
Q ss_pred EEEEcCchhHHHHHHHHHcCCCCCCCeEE
Q psy14756 86 VLQLQGDQRENICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 86 ~I~lQGD~~~~v~~~L~~~G~~p~~~I~i 114 (117)
...+.++....+..+|.+.|+.|...|++
T Consensus 12 I~~i~~~~~~~~~~rL~~lGl~~G~~v~v 40 (75)
T 2h3j_A 12 ITGYSPAISNGYRQRLFSMGLLPGAALRV 40 (75)
T ss_dssp EEEECTTCCTTHHHHHHHHTCCTTCEEEE
T ss_pred EEEEeCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 55666643456889999999999998877
No 35
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=38.40 E-value=50 Score=20.15 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEcCchhHHHHHHHHHcCCCCCCCeEE
Q psy14756 86 VLQLQGDQRENICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 86 ~I~lQGD~~~~v~~~L~~~G~~p~~~I~i 114 (117)
...|.+ ...+..+|.+.|+.|...|++
T Consensus 15 I~~i~~--~~~~~~rL~~lGl~pG~~v~V 41 (81)
T 2k5l_A 15 VVKLHG--TGALKRRIMDMGITRGCEIYI 41 (81)
T ss_dssp EEEECS--SSHHHHHHHHHTCCTTCEEEE
T ss_pred EEEEEC--CHHHHHHHHHCCCCCCCEEEE
Confidence 455666 356778888888888887776
No 36
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=37.12 E-value=49 Score=20.16 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=47.0
Q ss_pred CCCCceEEEEEEEecCCceEEEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCCCC
Q psy14756 29 DVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAK 108 (117)
Q Consensus 29 ~~~~~~I~I~~e~R~grK~VT~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~~p 108 (117)
|.+...|.|+++...|++.+++= +....-+++|.+++..+.+..-. .-.+...|+.... -+-..+.++..
T Consensus 2 p~~~~~i~ikV~~~~g~~~i~~~--i~~~t~l~kl~~~y~~~~gi~~~-------~~rf~fdG~~l~~-~~Tp~~l~med 71 (79)
T 3a4r_A 2 PLGSQELRLRVQGKEKHQMLEIS--LSPDSPLKVLMSHYEEAMGLSGH-------KLSFFFDGTKLSG-KELPADLGLES 71 (79)
T ss_dssp TTCCCCEEEEEECSSTTCEEEEE--ECTTSCHHHHHHHHHHHHTCTTC-------CCEEEETTEECCS-CCCHHHHTCCT
T ss_pred CCCCCEEEEEEEeCCCCEEEEEE--ECCCChHHHHHHHHHHHhCCCcc-------cEEEEECCEEcCC-CCCHHHcCCCC
Confidence 34456899999866665444432 34444688888888888876532 1245666654432 12344456666
Q ss_pred CCCeEEcC
Q psy14756 109 PEQLKVHG 116 (117)
Q Consensus 109 ~~~I~ihg 116 (117)
.+.|.++|
T Consensus 72 gD~Idv~~ 79 (79)
T 3a4r_A 72 GDLIEVWG 79 (79)
T ss_dssp TCEEEEEC
T ss_pred CCEEEEeC
Confidence 67777765
No 37
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=36.71 E-value=19 Score=23.57 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 95 ENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 95 ~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
+.|+++|.+.|+.+.+.|.+-|+
T Consensus 75 ~aV~~~L~~~Gv~~~~ri~~~g~ 97 (123)
T 3oon_A 75 RAIGNYLIKMKVKDKDQILFKGW 97 (123)
T ss_dssp HHHHHHHHHTTSSCGGGEEEEEC
T ss_pred HHHHHHHHHcCCCchHeEEEEEE
Confidence 67899999999932788988765
No 38
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=36.58 E-value=19 Score=25.41 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=18.8
Q ss_pred hHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 94 RENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
-+.|+++|.+.|+ +.+.|.+-|+
T Consensus 72 A~aV~~~L~~~Gi-~~~ri~~~G~ 94 (164)
T 1r1m_A 72 AYVVANNLVSNGV-PVSRISAVGL 94 (164)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 3568899999999 7788988775
No 39
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=36.23 E-value=79 Score=19.91 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=18.3
Q ss_pred eEEEEcCc--hhHHHHHHHHHcCC
Q psy14756 85 EVLQLQGD--QRENICQWLTKTGL 106 (117)
Q Consensus 85 ~~I~lQGD--~~~~v~~~L~~~G~ 106 (117)
..++|.|+ ..+++.++|.+.|+
T Consensus 69 L~v~l~G~~~~~~~ai~~L~~~~v 92 (100)
T 2qsw_A 69 LYIQLLGEEQNILAAIEGLRKLRV 92 (100)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCC
Confidence 68888996 56788899999887
No 40
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=34.83 E-value=62 Score=20.60 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=29.0
Q ss_pred HHHHHHHhhhcccceEEEec-----C---CCceEEEEcC---chhHHHHHHHHHcCC
Q psy14756 61 KKIVRACKKEFACNGTVIEH-----P---EYGEVLQLQG---DQRENICQWLTKTGL 106 (117)
Q Consensus 61 k~laK~lKk~~acggsv~~~-----~---~~~~~I~lQG---D~~~~v~~~L~~~G~ 106 (117)
+.+...+-+.|+...++... . -+...++|.| +..+++.++|.+.|+
T Consensus 34 ~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v 90 (98)
T 3ced_A 34 EPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQV 90 (98)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCC
Confidence 44455555556654433332 1 1236888899 457788999999987
No 41
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A 3s02_A
Probab=34.15 E-value=17 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 93 QRENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 93 ~~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
--..|+++|.+.|+ +.+.|.+.|+
T Consensus 93 RA~aV~~~L~~~Gv-~~~ri~~~g~ 116 (166)
T 3s06_A 93 RAYRVMKVLIQYGV-NPNQLSFSSY 116 (166)
T ss_dssp HHHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred HHHHHHHHHHHcCC-ChHhEEEEEE
Confidence 34678899999999 7788988774
No 42
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=33.83 E-value=19 Score=24.54 Aligned_cols=23 Identities=13% Similarity=0.478 Sum_probs=18.5
Q ss_pred hHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 94 RENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
-+.|.++|.+.|+ +.+.|.+-|+
T Consensus 91 A~aV~~~L~~~Gv-~~~ri~~~g~ 113 (149)
T 2k1s_A 91 ADSVASALITQGV-DASRIRTQGL 113 (149)
T ss_dssp HHHHHHHHHHHTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 3468899999998 7788988775
No 43
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=32.49 E-value=52 Score=25.51 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=42.2
Q ss_pred cCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHHHcCCCCCCCe
Q psy14756 43 NGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQL 112 (117)
Q Consensus 43 ~grK~VT~V~GL~~-~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~~~G~~p~~~I 112 (117)
.+.+.|.+|.|=.+ .+.+..+.++|++. .+ +. ..+.+-|.|++-..++|...|+.|...+
T Consensus 23 ~~m~ki~~v~Gtr~~~~~~a~li~~l~~~---~~-~~------~~~~~tG~h~~~~~~~~~~~~i~~~~~l 83 (396)
T 3dzc_A 23 NAMKKVLIVFGTRPEAIKMAPLVQQLCQD---NR-FV------AKVCVTGQHREMLDQVLELFSITPDFDL 83 (396)
T ss_dssp -CCEEEEEEECSHHHHHHHHHHHHHHHHC---TT-EE------EEEEECCSSSHHHHHHHHHTTCCCSEEC
T ss_pred CCCCeEEEEEeccHhHHHHHHHHHHHHhC---CC-Cc------EEEEEecccHHHHHHHHHhcCCCCceee
Confidence 44467889999777 66789999999874 11 22 2578899998767777777788554333
No 44
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=32.18 E-value=21 Score=21.39 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=22.4
Q ss_pred EEEEcCchhHHHHHHHHHcCCCCCCCeEE
Q psy14756 86 VLQLQGDQRENICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 86 ~I~lQGD~~~~v~~~L~~~G~~p~~~I~i 114 (117)
...|.++....+..+|.+.|+.|...|++
T Consensus 11 I~~i~~~~~~~~~~rL~~lGl~pG~~v~v 39 (75)
T 2gcx_A 11 ITGFSRDISPAYRQKLLSLGMLPGSSFHV 39 (75)
T ss_dssp EECCCSSCCHHHHHHHTTTTCCSSEEEEE
T ss_pred EEEEeCCCCHHHHHHHHHCCCCCCCEEEE
Confidence 34455544567899999999999988887
No 45
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=30.27 E-value=65 Score=28.26 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=40.4
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCch--hHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~--~~~v~~~L~~ 103 (117)
.|+|+-.++-+.-+.-.|-++++=.|.|..+.+.|.+|++||+. .+...+-|.+
T Consensus 7 ~v~G~VQGVGFRPfv~~lA~~~~l~G~V~N~~~~gV~i~~~g~~~~~~~F~~~l~~ 62 (772)
T 4g9i_A 7 HVQGIVQAVGFRPFVYRIAHEHNLRGYVKNLGDAGVEIVVEGREEDIEAFIEDLYK 62 (772)
T ss_dssp EECSSTTTSSCHHHHHHHHHHTTCCCBCCCCSTTCEEEECCSCSTTHHHHHHHHHH
T ss_pred EEEEEEeCCCccHHHHHHHHHcCCeEEEEECCCCeEEEEEEECHHHHHHHHHHHhh
Confidence 46788877777888888889999999999865667999999974 3334444443
No 46
>3s0y_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s0w_A
Probab=29.93 E-value=27 Score=24.86 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 92 DQRENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 92 D~~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
.--..|.++|.+.|+ +.+.|.+-|+
T Consensus 119 ~RA~aV~~~L~~~Gv-~~~ri~~~g~ 143 (193)
T 3s0y_A 119 NRAYRVMKVLIQYGV-NPNQLSFSSY 143 (193)
T ss_dssp HHHHHHHHHHHHTTC-CGGGEEEEEC
T ss_pred HHHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 334568999999999 7788988775
No 47
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=29.20 E-value=1.2e+02 Score=19.91 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=38.1
Q ss_pred CCceEEEEecCCCcccHHHHHHHHhhhcccceEEEecCCCceEEEEcCchhHHHHHHHH--HcCCCCCCCeEEcCC
Q psy14756 44 GRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT--KTGLAKPEQLKVHGF 117 (117)
Q Consensus 44 grK~VT~V~GL~~~~dlk~laK~lKk~~acggsv~~~~~~~~~I~lQGD~~~~v~~~L~--~~G~~p~~~I~ihg~ 117 (117)
.++.+..+-.+...-++..+.+++++. . +-.-.|.=.|+..+.+.+++. +.|+ .++|.++|+
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l--------~--~~~l~i~G~~~~~~~l~~~~~~~~~~l--~~~v~~~g~ 85 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKL--------Q--DEKLYIVGWFSKGDHAERYARKIMKIA--PDNVKFLGS 85 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHC--------T--TSCEEEEBCCCTTSTHHHHHHHHHHHS--CTTEEEEES
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhC--------C--CcEEEEEecCccHHHHHHHHHhhhccc--CCcEEEeCC
Confidence 346677777777644677788887764 1 111123334455567888887 6677 457888774
No 48
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=28.92 E-value=32 Score=22.43 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=32.1
Q ss_pred cHHHHHHHHhhhcccceEEEecCCC-c---eEEEEcCchhHHHHHHHHH-cCCCCCCCeEEcCC
Q psy14756 59 DLKKIVRACKKEFACNGTVIEHPEY-G---EVLQLQGDQRENICQWLTK-TGLAKPEQLKVHGF 117 (117)
Q Consensus 59 dlk~laK~lKk~~acggsv~~~~~~-~---~~I~lQGD~~~~v~~~L~~-~G~~p~~~I~ihg~ 117 (117)
.++.++..|+..=...-.|....+. | ....|--.--+.|.++|.+ .|+ +.+.|.+-|+
T Consensus 32 ~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~~Gi-~~~ri~~~g~ 94 (123)
T 3td3_A 32 EIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNV-DASRLSTQGF 94 (123)
T ss_dssp HHHHHHHHHHHSTTCEEEEEECCCSCSCHHHHHHHHHHHHHHHHHHHHHHSCC-CGGGEEEEEC
T ss_pred HHHHHHHHHHhCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHhhCC-CHHHEEEEEE
Confidence 4677777777543322233322111 0 0111111224788999998 599 7788988764
No 49
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=28.72 E-value=29 Score=23.63 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=21.6
Q ss_pred EEEEcCchhH-HHHHHHHHcCCCCCCCeEE
Q psy14756 86 VLQLQGDQRE-NICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 86 ~I~lQGD~~~-~v~~~L~~~G~~p~~~I~i 114 (117)
-|=||=|..+ -|.+-|.++|+ |++.|.+
T Consensus 68 KIWIq~d~TE~gIa~eLv~~GV-pk~dIVL 96 (112)
T 2nlv_A 68 KIWLQQNLTDRNPAEELVMMGV-PREDIVL 96 (112)
T ss_dssp EEEEEEECSSSCHHHHHHHTTC-CGGGEEE
T ss_pred eEEEEeCCccccHHHHHHHcCC-CHHHEEE
Confidence 4666666654 47789999999 9999875
No 50
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=27.72 E-value=31 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=21.4
Q ss_pred EEEEcCchhH-HHHHHHHHcCCCCCCCeEE
Q psy14756 86 VLQLQGDQRE-NICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 86 ~I~lQGD~~~-~v~~~L~~~G~~p~~~I~i 114 (117)
-|=||=|..+ -|.+-|.++|+ |++.|.+
T Consensus 70 KIWIq~d~TE~gIa~eLv~~GV-pk~dIVL 98 (114)
T 2nwv_A 70 KIYIEEDYTEEGIATELMRLGV-TNNDIVL 98 (114)
T ss_dssp EEEEEEECCSSCHHHHHHHTTC-CGGGEEE
T ss_pred eEEEEeCCccccHHHHHHHcCC-CHHHEEE
Confidence 4666666554 57789999999 9999875
No 51
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=27.22 E-value=29 Score=23.63 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=21.4
Q ss_pred EEEEcCchhH-HHHHHHHHcCCCCCCCeEE
Q psy14756 86 VLQLQGDQRE-NICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 86 ~I~lQGD~~~-~v~~~L~~~G~~p~~~I~i 114 (117)
-|=||=|..+ -|.+-|.++|+ |++.|.+
T Consensus 68 KIWIq~d~TE~gIa~eLv~~GV-pk~dIVL 96 (112)
T 3d7q_A 68 KIWIQQNTTEADIALELMEMGI-DKQDIVI 96 (112)
T ss_dssp EEEEEEECSSCCHHHHHHTTTC-CGGGEEE
T ss_pred eEEEEeCCccccHHHHHHHcCC-CHHHEEE
Confidence 4666666554 57789999999 9999875
No 52
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=27.05 E-value=1e+02 Score=19.96 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEcCchhHHHHHHHHHcCCCCCCCeEE
Q psy14756 86 VLQLQGDQRENICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 86 ~I~lQGD~~~~v~~~L~~~G~~p~~~I~i 114 (117)
...|.+| ..+...|.+.|+.|...|+|
T Consensus 14 I~~I~~~--~~l~rrL~~lGl~pG~~V~V 40 (105)
T 2k5f_A 14 VTSVAAE--PAVRRRLMDLGLVRGAKLKV 40 (105)
T ss_dssp EEEECSC--HHHHHHHHHHTCSTTCEEEE
T ss_pred EEEEECC--HHHHHHHHHcCCCCCCEEEE
Confidence 4556663 56788888888888887776
No 53
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=26.13 E-value=90 Score=19.19 Aligned_cols=27 Identities=7% Similarity=0.318 Sum_probs=19.0
Q ss_pred EEEEcCchhHHHHHHHHHcCCCCCCCeEE
Q psy14756 86 VLQLQGDQRENICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 86 ~I~lQGD~~~~v~~~L~~~G~~p~~~I~i 114 (117)
...|.|| ..+..+|.+.|+.|...|+|
T Consensus 18 I~~i~~~--~~~~~rL~~mGl~pG~~V~V 44 (86)
T 2k4y_A 18 VIGIVPE--SKVRRKIMDMGIVRGTEIYI 44 (86)
T ss_dssp EEEECTT--SSHHHHHHHHTCCTTCEEEE
T ss_pred EEEEECC--HHHHHHHHHCCCCCCCEEEE
Confidence 4455553 55778888888888887766
No 54
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=26.02 E-value=44 Score=20.54 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=21.4
Q ss_pred EEEEcC-chhHHHHHHHHHcCCCCCCCeEE
Q psy14756 86 VLQLQG-DQRENICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 86 ~I~lQG-D~~~~v~~~L~~~G~~p~~~I~i 114 (117)
...|.- +....+...|.+.|+.|...|+|
T Consensus 15 I~~i~~~~~~~~~~~rL~~lGl~pG~~v~V 44 (85)
T 3mhx_A 15 VESVQDLHANDAIARRLRELGFVKGEEVRM 44 (85)
T ss_dssp EEEECCSSSSCHHHHHHHHTTCCTTCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCEEEE
Confidence 445621 23357889999999999999887
No 55
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=25.97 E-value=68 Score=23.07 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=34.2
Q ss_pred cccHHHHHHHHhhhcccceEEEecCCCc-eEEEEcCchhHHHHHHHHHcCC
Q psy14756 57 EYDLKKIVRACKKEFACNGTVIEHPEYG-EVLQLQGDQRENICQWLTKTGL 106 (117)
Q Consensus 57 ~~dlk~laK~lKk~~acggsv~~~~~~~-~~I~lQGD~~~~v~~~L~~~G~ 106 (117)
.++++++|+.|...+.|+.-|....++- +.-..++-..+.+.+++.+..|
T Consensus 31 ~v~f~eia~vLs~vL~~NvyIvs~~GkiLG~~~~~~~~~~~~~~~~~~~~f 81 (170)
T 2gx5_A 31 PVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQF 81 (170)
T ss_dssp CCCHHHHHHHHHHHHTSEEEEEETTSBEEEEECSSCCCCHHHHHHHHHTBC
T ss_pred CCCHHHHHHHHHHHhCCCEEEEcCCCCEEEEecccccchHHHHHHHhcCcC
Confidence 6799999999999999999998853321 2222233334677776666555
No 56
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=24.95 E-value=1.1e+02 Score=19.17 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=18.1
Q ss_pred eEEEEcCc--hhHHHHHHHHHcCC
Q psy14756 85 EVLQLQGD--QRENICQWLTKTGL 106 (117)
Q Consensus 85 ~~I~lQGD--~~~~v~~~L~~~G~ 106 (117)
..+++.|+ ..+++.++|.+.|+
T Consensus 69 L~v~l~G~~~~~~~ai~~L~~~~v 92 (101)
T 2qrr_A 69 MVAELFGNEQDDSAAIEYLRENNV 92 (101)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCC
Confidence 68888996 45788899999887
No 57
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=24.90 E-value=1.1e+02 Score=19.57 Aligned_cols=22 Identities=14% Similarity=0.460 Sum_probs=19.1
Q ss_pred eEEEEcCc--hhHHHHHHHHHcCC
Q psy14756 85 EVLQLQGD--QRENICQWLTKTGL 106 (117)
Q Consensus 85 ~~I~lQGD--~~~~v~~~L~~~G~ 106 (117)
..+++.|| ..+++.++|.+.|+
T Consensus 67 L~v~l~G~~~~~~~ai~~L~~~~v 90 (106)
T 3dhx_A 67 MLTEMHGTQQDTQAAIAWLQEHHV 90 (106)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCC
Confidence 68999998 46788999999988
No 58
>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str}
Probab=24.48 E-value=32 Score=24.07 Aligned_cols=23 Identities=22% Similarity=0.599 Sum_probs=19.0
Q ss_pred hHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 94 RENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
-..|.++|.+.|+ +.+.|.+-|+
T Consensus 113 A~aV~~~L~~~Gv-~~~ri~~~g~ 135 (174)
T 3khn_A 113 SVNVLRYFLGAGI-EPARLTATGL 135 (174)
T ss_dssp HHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred HHHHHHHHHHcCC-CHHHEEEEEE
Confidence 5678999999999 7778888764
No 59
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.52 E-value=89 Score=20.46 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=33.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccc-eEEEecCCCceEEEEcCchhHHHHHHHHH
Q psy14756 50 TVQGLSSEYDLKKIVRACKKEFACN-GTVIEHPEYGEVLQLQGDQRENICQWLTK 103 (117)
Q Consensus 50 ~V~GL~~~~dlk~laK~lKk~~acg-gsv~~~~~~~~~I~lQGD~~~~v~~~L~~ 103 (117)
.|.||+..++.++|-+.|...|+=- |.|.+-..+-..|+. +-.+.....+.+
T Consensus 13 YV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F--~~~esA~~A~~~ 65 (96)
T 2diu_A 13 YVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRF--INQDSAERAQKR 65 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEE--SSHHHHHHHHHH
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEE--CCHHHHHHHHHH
Confidence 3999999888888888888888755 688775332234444 223333344444
No 60
>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus}
Probab=22.37 E-value=39 Score=25.88 Aligned_cols=24 Identities=21% Similarity=0.641 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 93 QRENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 93 ~~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
--+.|+++|.+.|+ +.+.|.+-|+
T Consensus 219 RA~aV~~~L~~~GI-~~~ri~~~G~ 242 (278)
T 2zf8_A 219 RAESLRDYFQSLGL-PEDRIQVQGY 242 (278)
T ss_dssp HHHHHHHHHHHHSC-CTTSEECCEE
T ss_pred HHHHHHHHHHHcCC-CHHHEEEEEE
Confidence 34568899999999 8888988764
No 61
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=22.33 E-value=1.4e+02 Score=21.26 Aligned_cols=27 Identities=11% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEcCchhHHHHHHHHHcCCCCCCCeEE
Q psy14756 86 VLQLQGDQRENICQWLTKTGLAKPEQLKV 114 (117)
Q Consensus 86 ~I~lQGD~~~~v~~~L~~~G~~p~~~I~i 114 (117)
...|+++. .+...|.+.|+.|...|+|
T Consensus 154 I~~i~~~~--~~~~~L~~~Gi~pG~~v~v 180 (214)
T 3hrs_A 154 LARVHDNF--DLLTYLERNGLQVGKTIRF 180 (214)
T ss_dssp EEEECCCH--HHHHHHHTTTCCTTCEEEE
T ss_pred EEEEeCcH--HHHHHHHHCCCCCCCEEEE
Confidence 45666663 7777888888888887776
No 62
>2l26_A Uncharacterized protein RV0899/MT0922; out membrane protein, membrane protein; NMR {Mycobacterium tuberculosis}
Probab=22.03 E-value=50 Score=25.23 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=17.9
Q ss_pred hHHHHHHHHHcCCCCCCCeEEcCC
Q psy14756 94 RENICQWLTKTGLAKPEQLKVHGF 117 (117)
Q Consensus 94 ~~~v~~~L~~~G~~p~~~I~ihg~ 117 (117)
-+.|+++|.+.|+ +.+.|.+-|+
T Consensus 228 A~aV~~~L~~~Gv-~~~ri~~~G~ 250 (284)
T 2l26_A 228 AKIVADYLVARGV-AGDHIATVGL 250 (284)
T ss_dssp HHHHHHHHHHTTC-CTTSEEEEEE
T ss_pred HHHHHHHHHHcCC-ChHHEEEEEE
Confidence 3568889999998 7778888764
No 63
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=21.43 E-value=96 Score=22.40 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=35.2
Q ss_pred ceEEEEecCCCcccHHHHHHHHhhh-cccceEEEecCCCceEEEEcCchhHHH---HHHHHHcC
Q psy14756 46 KTLTTVQGLSSEYDLKKIVRACKKE-FACNGTVIEHPEYGEVLQLQGDQRENI---CQWLTKTG 105 (117)
Q Consensus 46 K~VT~V~GL~~~~dlk~laK~lKk~-~acggsv~~~~~~~~~I~lQGD~~~~v---~~~L~~~G 105 (117)
..+|+.+|++.. ..+++.|.+|-. +=.-+++.. ++|-|.|-.|+.+ +++|.+..
T Consensus 94 q~~~lk~GI~~e-~AKkIvK~IKdsklKVqa~IQG-----d~vRVtgKkrDDLQ~viallk~~d 151 (163)
T 1in0_A 94 KEIKLKQGIETE-MAKKITKLVKDSKIKVQTQIQG-----EQVRVTGKSRDDLQAVIQLVKSAE 151 (163)
T ss_dssp EEEEECCSCCHH-HHHHHHHHHHHHTCSEEEEEET-----TEEEEEESCHHHHHHHHHHHHHSC
T ss_pred EEEEeecccCHH-HHHHHHHHHHhcCCcceeEecC-----cEEEEecCCHHHHHHHHHHHHhcC
Confidence 578888899973 456666666532 335666664 4788877777666 55666543
No 64
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=20.94 E-value=1.3e+02 Score=20.20 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=23.8
Q ss_pred HHHHHHhhhcccceEEEecCCCceEEEEcCch-hHHHHHHHHHcCC
Q psy14756 62 KIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ-RENICQWLTKTGL 106 (117)
Q Consensus 62 ~laK~lKk~~acggsv~~~~~~~~~I~lQGD~-~~~v~~~L~~~G~ 106 (117)
...+.|++.+. ++.+.+ .+.+||+. .+.|.+||.+.|+
T Consensus 124 ~~~~~l~~~l~-~~~~~~------g~~~~g~~~~~~v~~W~~~~~~ 162 (162)
T 3klb_A 124 NCEKNLHKAYP-DIVWKD------GKLLNGQITRDLVTEWFEKIRL 162 (162)
T ss_dssp HHHHHHHHHCT-TSEECC------CEECCSCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcC-CCEeec------ceEEeCCCCHHHHHHHHHHhCC
Confidence 34455555554 566654 47888844 4568889988763
No 65
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A
Probab=20.62 E-value=1.8e+02 Score=21.92 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=41.5
Q ss_pred eeeccCCCCccccccCCCCCCCCCceEEEEEEEecCCceEEEEecCCCcccHHHHHHHHhhhc-----ccceEEEecCCC
Q psy14756 9 VGRCQKTLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEF-----ACNGTVIEHPEY 83 (117)
Q Consensus 9 ~~~~~~~f~p~~~~~~~~~~~~~~~~I~I~~e~R~grK~VT~V~GL~~~~dlk~laK~lKk~~-----acggsv~~~~~~ 83 (117)
+-+.|..|.||.....=.+ |....+|.+.-..+.-++..+.|+--.. +-.+.=..-||... -||+-+....++
T Consensus 92 iIrmPkDfpPf~~~l~FR~-P~~~e~V~lVg~~fq~k~~~s~vSesS~-i~p~~~~~fWkHwIsT~~G~CGlPlVs~~Dg 169 (229)
T 1lvm_A 92 IIRMPKDFPPFPQKLKFRE-PQREERICLVTTNFQTKSMSSMVSDTSC-TFPSSDGIFWKHWIQTKDGQCGSPLVSTRDG 169 (229)
T ss_dssp EEECCTTSCCCCSCCCBCC-CCTTCEEEEEEEECSSSSCEEEECCCEE-CEEETTTTEEEECBCCCTTCTTCEEEETTTC
T ss_pred EEeCCCcCCCcccccccCC-CCCCCeEEEEEeEeecCCccEEECCcce-eEecCCCCEeEEEeeCCCCcCCCcEEECCCC
Confidence 4568999999998532222 4555567655555776777777763221 11111123344333 388888875443
No 66
>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A
Probab=20.53 E-value=72 Score=22.66 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHcCCCCCCCe-EEcCC
Q psy14756 93 QRENICQWLTKTGLAKPEQL-KVHGF 117 (117)
Q Consensus 93 ~~~~v~~~L~~~G~~p~~~I-~ihg~ 117 (117)
--..|.++|.+.|+ +.+.| .+-||
T Consensus 120 RA~aV~~~L~~~Gi-~~~ri~~~~G~ 144 (183)
T 2zvy_A 120 RANASRRELVAGGL-DNGKVLRVVGM 144 (183)
T ss_dssp HHHHHHHHHHHTTC-CTTCEEEEEEC
T ss_pred HHHHHHHHHHHcCC-CHHHhheeEEe
Confidence 34568899999999 77778 67765
No 67
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=20.42 E-value=95 Score=20.84 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=21.4
Q ss_pred EEEEcCchhHHHHHHHHHcCCC-CCCCeE
Q psy14756 86 VLQLQGDQRENICQWLTKTGLA-KPEQLK 113 (117)
Q Consensus 86 ~I~lQGD~~~~v~~~L~~~G~~-p~~~I~ 113 (117)
.+++.||..+.+...|.+.|+- |++++.
T Consensus 14 aVq~~~~y~~~L~~ALkKF~ledpskw~V 42 (110)
T 1k8r_B 14 AVQSRGDYQKTLAIALKKFSLEDASKFIV 42 (110)
T ss_dssp EEECCSCHHHHHHHHHHHHTCCCTTSEEE
T ss_pred EeeehhhHHHHHHHHHHHcCCCChhHeEE
Confidence 6888899998888889888773 555543
Done!