RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14756
(117 letters)
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein;
NMR {Saccharomyces cerevisiae}
Length = 108
Score = 145 bits (366), Expect = 1e-46
Identities = 54/104 (51%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
Query: 14 KTLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 73
K+ DPFAD G ++ +HIRIQQRNGRKTLTTVQG+ EYDLK+I++ KK+FAC
Sbjct: 7 KSFDPFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFAC 64
Query: 74 NGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
NG +++ PE GE++QLQGDQR +C+++ + + +K+HGF
Sbjct: 65 NGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP:
d.64.1.1
Length = 126
Score = 140 bits (355), Expect = 7e-45
Identities = 73/106 (68%), Positives = 88/106 (83%), Gaps = 2/106 (1%)
Query: 14 KTLDPFADAFKGSEDDV--QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEF 71
+ DPFADA KG + + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+F
Sbjct: 21 HSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKF 80
Query: 72 ACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
ACNGTVIEHPEYGEV+QLQGDQR+NICQ+L + GLAK +QLKVHGF
Sbjct: 81 ACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_F
Length = 101
Score = 132 bits (333), Expect = 1e-41
Identities = 37/96 (38%), Positives = 60/96 (62%)
Query: 21 DAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEH 80
D + D +HIR++QR GRK TTV+G+ E+D +KI++ KK +CN T++E
Sbjct: 5 DFQFENNIDDFQTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVEE 64
Query: 81 PEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHG 116
E +V++L GD R I Q+L++ G+A + + +HG
Sbjct: 65 DEGKKVIKLNGDHRNQIQQFLSEEGIAAVDNITIHG 100
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region;
alpha-beta plait, open-faced beta sandwich,
ferredoxin-like fold; NMR {Escherichia coli} SCOP:
d.64.1.1
Length = 116
Score = 68.3 bits (167), Expect = 2e-16
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 31 QDGLVHIRIQ-QRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQ 88
DG+V I+ Q K + + G+ + +L K+ KK+ C G V + V++
Sbjct: 29 GDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD-----GVIE 83
Query: 89 LQGDQRENICQWLTKTG 105
+QGD+R+ + L G
Sbjct: 84 IQGDKRDLLKSLLEAKG 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 8e-04
Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 68/163 (41%)
Query: 9 VG-RCQKTLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKT--LTTVQGLSSEYDLKKIVR 65
+G RC + + ED +++ G + L ++ L+ E ++ V
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENN---------EGVPSPML-SISNLTQE-QVQDYVN 354
Query: 66 ACKKEFAC---------NGT---VIE-HPE--YGEVLQLQG-------DQ-------R-- 94
NG V+ P+ YG L L+ DQ R
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 95 ----------------------ENICQWLTKTGLA-KPEQLKV 114
+ I + L K ++ + +++
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Score = 30.0 bits (67), Expect = 0.16
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 17/83 (20%)
Query: 42 RNGRKTLTTV---QGLSSEY--DLKKI-------VRACKKEFACN-GTVIEHPEYGEVLQ 88
G L + QG + +Y +L+ + V K A +I E +
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 89 LQGDQRENICQWLTKTGLAKPEQ 111
QG NI +WL P++
Sbjct: 210 TQG---LNILEWLENPS-NTPDK 228
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein.,
structural genomics, PSI-2, protein STR initiative; HET:
CIT; 2.70A {Streptococcus mutans}
Length = 519
Score = 31.5 bits (71), Expect = 0.051
Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Query: 13 QKTLDPFADAFKGSEDDVQDGL-VHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEF 71
K L +A + + ++DG+ + R G + V ++ +K I A
Sbjct: 46 DKLLSSIHEAIEKT--RLKDGMTISFHHHFREGDYVMNMVLDEIAKMGIKDISIAPSSIA 103
Query: 72 ACNGTVIEHPEYGEVLQLQGDQ-RENICQWLTKTGLAKPEQLKVHG 116
+ +I+H + G V + R+ + +++ + P ++ HG
Sbjct: 104 NVHEPLIDHIKNGVVTNITSSGLRDKVGAAISEGIMENPVIIRSHG 149
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 27.2 bits (59), Expect = 1.3
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 30 VQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQL 89
V + + HI++ Q+N R L ++ L E D+ +R+C+ + + E Q
Sbjct: 126 VIEKVQHIQLLQKNVRAQLVDMKRL--EVDIDIKIRSCRGSCSRALAREVDLKDYEDQQK 183
Query: 90 QGDQ 93
Q +Q
Sbjct: 184 QLEQ 187
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest
center for structural genomics, MCSG, structural
genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2
c.124.1.2
Length = 509
Score = 26.1 bits (57), Expect = 3.1
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 42 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ-RENICQW 100
R G K + V +E + + A + +IEH + G V Q+ R + +
Sbjct: 71 RGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKLGEE 130
Query: 101 LTKTGLAKPEQLKVHG 116
++ + P Q+ HG
Sbjct: 131 ISAGLMENPVQIHSHG 146
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 24.6 bits (54), Expect = 6.4
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 36 HIRIQQRNGRKTLTTVQGLSSEYDL 60
I+I R+G+ + SS +L
Sbjct: 60 LIKIFHRDGKYGFSDPLTFSSVVEL 84
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR
{Synthetic} SCOP: j.3.1.2
Length = 26
Score = 22.7 bits (48), Expect = 8.3
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 2 VIYCHNLVGRCQK 14
+IYC+ G+CQ+
Sbjct: 8 IIYCNRRTGKCQR 20
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 24.4 bits (53), Expect = 8.7
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 31 QDGLVHIRIQQRNGRKTLTTVQGL 54
+H RI+ NGR + +
Sbjct: 67 HGKTLHTRIEHSNGRFSFYEQPDV 90
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; 2.00A {Enterococcus faecalis} SCOP:
d.157.1.10
Length = 429
Score = 24.6 bits (54), Expect = 8.8
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 19 FADAFKGSEDDVQDGLVHIRIQQRNGRKTLTT 50
A SE+D+ LV + ++ N + T
Sbjct: 229 PAQIAVVSEEDLVQHLVRLELENPNRQITFNG 260
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 24.8 bits (53), Expect = 9.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 36 HIRIQQRNGRKTLTTVQGLSSEYDL 60
I+I R+G+ + SS +L
Sbjct: 59 LIKIFHRDGKYGFSDPLTFSSVVEL 83
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 24.6 bits (54), Expect = 9.9
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 34 LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFA 72
L +R + + + L +L + KK F
Sbjct: 461 LSFMRANKDSLLDHIRQTGELPDTKELDAAIEEFKKGFT 499
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.420
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,780,815
Number of extensions: 93321
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 21
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)