RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14756
         (117 letters)



>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
           eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score =  141 bits (356), Expect = 2e-45
 Identities = 73/106 (68%), Positives = 88/106 (83%), Gaps = 2/106 (1%)

Query: 14  KTLDPFADAFKGSED--DVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEF 71
            + DPFADA KG +      +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+F
Sbjct: 21  HSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKF 80

Query: 72  ACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLKVHGF 117
           ACNGTVIEHPEYGEV+QLQGDQR+NICQ+L + GLAK +QLKVHGF
Sbjct: 81  ACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126


>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 71.9 bits (177), Expect = 1e-18
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 32  DGLVHIRIQQRNGR--KTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQ 88
           DG+V I+ Q  +GR  K +  + G+   + +L K+    KK+  C G V +      V++
Sbjct: 3   DGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD-----GVIE 56

Query: 89  LQGDQRENICQWLTKTG 105
           +QGD+R+ +   L   G
Sbjct: 57  IQGDKRDLLKSLLEAKG 73


>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain,
           citF2 {Salmonella typhimurium [TaxId: 90371]}
          Length = 236

 Score = 32.4 bits (74), Expect = 0.007
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 14  KTLDPFADAFKGSEDDVQDGLV-----HIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACK 68
           K  D   +A + S   +++G+        R     G K +  V    +E   + +  A  
Sbjct: 41  KICDSLEEAIRRSG--LKNGMTISFHHAFR----GGDKVVNMVMAKLAEMGFRDLTLASS 94

Query: 69  KEFACNGTVIEHPEYGEVLQLQGDQ-RENICQWLTKTGLAKPEQLKVHG 116
                +  +IEH + G V Q+     R  + + ++   +  P Q+  HG
Sbjct: 95  SLIDAHWPLIEHIKNGVVRQIYTSGLRGKLGEEISAGLMENPVQIHSHG 143


>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
          {Escherichia coli [TaxId: 562]}
          Length = 455

 Score = 28.3 bits (62), Expect = 0.22
 Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 20/88 (22%)

Query: 10 GRCQKTLDPFADAFKGS--------EDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLK 61
          GR  +  D     F  S        E D+   +   +              G+ +  +  
Sbjct: 4  GRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVT---------VGVLTAEEQA 54

Query: 62 KIVRACK---KEFACNGTVIEHPEYGEV 86
          ++  A     ++       I   +  ++
Sbjct: 55 QLEEALNVLLEDVRARPQQILESDAEDI 82


>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 459

 Score = 26.0 bits (56), Expect = 1.3
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 17/68 (25%)

Query: 10 GRCQKTLDPFADAFKGS--------EDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLK 61
          GR    +DP  + F  S        E DVQ    + R  ++          GL ++ ++ 
Sbjct: 6  GRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEK---------AGLLTKAEMD 56

Query: 62 KIVRACKK 69
          +I+    K
Sbjct: 57 QILHGLDK 64


>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 305

 Score = 25.2 bits (55), Expect = 2.4
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 8/58 (13%)

Query: 28  DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFA-----CNGTVIEH 80
            D+++  + + I     RK L       S +D K+  +  +         C G ++  
Sbjct: 72  SDIKNEALELGI---PERKILNGKFFFISNFDFKRYCKLIENPITIISDDCWGGLVSS 126


>d1s21a_ d.166.1.4 (A:) AvrPphF ORF2, a type III effector
          {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
          Length = 176

 Score = 24.5 bits (53), Expect = 3.0
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 17/70 (24%)

Query: 44 GRKTLTTVQGLSSE--------------YDLKK---IVRACKKEFACNGTVIEHPEYGEV 86
          G+ TLT++  LSSE              YDL     + R  ++E+  NG    +P  G +
Sbjct: 6  GQYTLTSIHQLSSEERENFLDAHDPMRVYDLNSETSVYRTTQREYVRNGYATGNPNSGAI 65

Query: 87 LQLQGDQREN 96
          + L  + +E+
Sbjct: 66 IALHEELQES 75


>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
          {Domestic duck (Anas platyrhynchos), delta-crystallin
          [TaxId: 8839]}
          Length = 449

 Score = 23.4 bits (49), Expect = 9.9
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 17/61 (27%)

Query: 17 DPFADAFKGS--------EDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACK 68
          DP  +    S        E D+Q  + + +  ++          G+ ++ +L+KI+   +
Sbjct: 2  DPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEK---------AGILTKTELEKILSGLE 52

Query: 69 K 69
          K
Sbjct: 53 K 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 442,475
Number of extensions: 18241
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 11
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)