BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14757
         (90 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OGH|A Chain A, Solution Structure Of Yeast Eif1
          Length = 108

 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 2/62 (3%)

Query: 1  PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
          PFAD   G ++      +HIRIQQRNGRKTLTTVQG+  EYDLK+I++  KK+FACNG +
Sbjct: 11 PFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNI 68

Query: 61 IE 62
          ++
Sbjct: 69 VK 70


>pdb|2IF1|A Chain A, Human Translation Initiation Factor Eif1, Nmr, 29
          Structures
          Length = 126

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 6/66 (9%)

Query: 1  PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
          PFADA KG  DD+     +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct: 25 PFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 82

Query: 57 NGTVIE 62
          NGTVIE
Sbjct: 83 NGTVIE 88


>pdb|2XZM|F Chain F, Crystal Structure Of The Eukaryotic 40s Ribosomal
          Subunit In Complex With Initiation Factor 1. This File
          Contains The 40s Subunit And Initiation Factor For
          Molecule 1
 pdb|2XZN|F Chain F, Crystal Structure Of The Eukaryotic 40s Ribosomal
          Subunit In Complex With Initiation Factor 1. This File
          Contains The 40s Subunit And Initiation Factor For
          Molecule 2
          Length = 101

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 6  FKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIE 62
          F+ + DD Q   +HIR++QR GRK  TTV+G+  E+D +KI++  KK  +CN T++E
Sbjct: 8  FENNIDDFQTH-IHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVE 63


>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
 pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
 pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
           Crystal)
 pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
 pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
 pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
 pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
 pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
 pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
           Peptide And Dadme-Nad+
 pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
 pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
          Length = 246

 Score = 28.5 bits (62), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 21  RIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTFPLCD 72
           R+ QR G K +  + G   EY     VR C+K++     + ++     PLCD
Sbjct: 102 RLHQRAGSKKVIELHGNVEEY---YCVR-CEKKYTVEDVIKKLESSDVPLCD 149


>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
 pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
 pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
          Length = 246

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 21  RIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTFPLCD 72
           R+ QR G K +  + G   EY     VR C+K++     + ++     PLCD
Sbjct: 102 RLHQRAGSKKVIELAGNVEEY---YCVR-CEKKYTVEDVIKKLESSDVPLCD 149


>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
          Length = 246

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 21  RIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTFPLCD 72
           R+ QR G K +  + G   EY     VR C+K++     + ++     PLCD
Sbjct: 102 RLHQRAGSKKVIELYGNVEEY---YCVR-CEKKYTVEDVIKKLESSDVPLCD 149


>pdb|3DAO|A Chain A, Crystal Structure Of A Putative Phosphatse (Eubrec_1417)
           From Eubacterium Rectale At 1.80 A Resolution
 pdb|3DAO|B Chain B, Crystal Structure Of A Putative Phosphatse (Eubrec_1417)
           From Eubacterium Rectale At 1.80 A Resolution
          Length = 283

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 65  RDTFPLCDFYRATPSRGKNRVGGNP 89
           RD  P CD++ ATP       GG+P
Sbjct: 115 RDELPACDYFAATPDFCFAEDGGSP 139


>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain
 pdb|3K6S|C Chain C, Structure Of Integrin Alphaxbeta2 Ectodomain
 pdb|3K6S|E Chain E, Structure Of Integrin Alphaxbeta2 Ectodomain
 pdb|3K6S|G Chain G, Structure Of Integrin Alphaxbeta2 Ectodomain
 pdb|3K71|A Chain A, Structure Of Integrin Alphax Beta2 Ectodomain
 pdb|3K71|C Chain C, Structure Of Integrin Alphax Beta2 Ectodomain
 pdb|3K71|E Chain E, Structure Of Integrin Alphax Beta2 Ectodomain
 pdb|3K71|G Chain G, Structure Of Integrin Alphax Beta2 Ectodomain
 pdb|3K72|A Chain A, Structure Of Integrin Alphax Beta2
 pdb|3K72|C Chain C, Structure Of Integrin Alphax Beta2
          Length = 1095

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 2   FADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQ----GLSSEYDLKKIVRACKKEFACN 57
           F  A  G +D  QDGLV + +  R     L T      G+S ++   +I R+    F C 
Sbjct: 565 FGQALSGGQDLTQDGLVDLAVGARGQVLLLRTRPVLWVGVSMQFIPAEIPRSA---FECR 621

Query: 58  GTVIEVSRDTFPLCDFYRATPSRGKNRVG 86
             V  VS  T    +       R KN +G
Sbjct: 622 EQV--VSEQTLVQSNICLYIDKRSKNLLG 648


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,818,416
Number of Sequences: 62578
Number of extensions: 93675
Number of successful extensions: 181
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 11
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)