BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14757
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VZS3|SUI1_DROME Protein translation factor SUI1 homolog OS=Drosophila
melanogaster GN=CG17737 PE=1 SV=1
Length = 110
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/62 (90%), Positives = 61/62 (98%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
PFADA KG++DD+QDGLVHIRIQQRNGRKTLTTVQGLS+EYDLKKIVR+CKKEFACNGTV
Sbjct: 11 PFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTV 70
Query: 61 IE 62
IE
Sbjct: 71 IE 72
>sp|P42678|SUI1_ANOGA Protein translation factor SUI1 homolog OS=Anopheles gambiae
GN=AGAP006459 PE=3 SV=1
Length = 110
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/62 (91%), Positives = 60/62 (96%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
PFADA KG++ DVQDGLVHIRIQQRNGRKTLTTVQGLS+EYDLKKIVRACKKEFACNGTV
Sbjct: 11 PFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTV 70
Query: 61 IE 62
IE
Sbjct: 71 IE 72
>sp|P32911|SUI1_YEAST Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUI1 PE=1
SV=1
Length = 108
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
PFAD G ++ +HIRIQQRNGRKTLTTVQG+ EYDLK+I++ KK+FACNG +
Sbjct: 11 PFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNI 68
Query: 61 IE 62
++
Sbjct: 69 VK 70
>sp|P79060|SUI1_SCHPO Protein translation factor sui1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sui1 PE=3 SV=3
Length = 109
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 48/62 (77%), Gaps = 2/62 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
PFAD G +D +HIRIQQRNGRKTLTTVQGL E+D K+I+RA KK+FACNGT+
Sbjct: 12 PFADT--GDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTI 69
Query: 61 IE 62
++
Sbjct: 70 VK 71
>sp|Q755R1|SUI1_ASHGO Protein translation factor SUI1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SUI1A
PE=3 SV=1
Length = 108
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
PFAD G ++ +HIRIQQRNGRKTLTTVQG+ EYDLK+I++ +K+F CNG +
Sbjct: 11 PFADT--GDDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNM 68
Query: 61 IE 62
++
Sbjct: 69 VK 70
>sp|Q94JV4|SUI12_ARATH Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana
GN=At1g54290 PE=3 SV=1
Length = 113
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
PFADA VHIR+QQRNGRK+LTTVQGL EY KI++ KKEF CNGTV
Sbjct: 14 PFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTV 73
Query: 61 IEVSR 65
++ S
Sbjct: 74 VQDSE 78
>sp|P41568|SUI11_ARATH Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana
GN=At4g27130 PE=3 SV=2
Length = 113
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
PFADA VHIR+QQRNGRK+LTTVQGL EY KI++ KKEF CNGTV
Sbjct: 14 PFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTV 73
Query: 61 IEVSR 65
++ S
Sbjct: 74 VQDSE 78
>sp|Q9SQF4|SUI1_BRAOL Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3
SV=1
Length = 113
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
PFADA VHIR+QQRNGRK+LTTVQGL EY KI++ KKEF CNGTV
Sbjct: 14 PFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTV 73
Query: 61 IEVSR 65
++ S
Sbjct: 74 VQDSE 78
>sp|Q0D5W6|SUI1_ORYSJ Protein translation factor SUI1 homolog OS=Oryza sativa subsp.
japonica GN=GOS2 PE=3 SV=1
Length = 115
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 1 PFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 58
PFA+A G VH+RIQQRNGRK+LTTVQGL E+ KI++ KKEF CNG
Sbjct: 14 PFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNG 73
Query: 59 TVIE 62
TV++
Sbjct: 74 TVVQ 77
>sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog OS=Oryza sativa subsp.
indica GN=GOS2 PE=2 SV=1
Length = 115
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 1 PFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 58
PFA+A G VH+RIQQRNGRK+LTTVQGL E+ KI++ KKEF CNG
Sbjct: 14 PFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNG 73
Query: 59 TVIE 62
TV++
Sbjct: 74 TVVQ 77
>sp|P56330|SUI1_MAIZE Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3
SV=1
Length = 115
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 1 PFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 58
PFA+A G VH+RIQQRNGRK+LTTVQGL E+ KI++ KKEF CNG
Sbjct: 14 PFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNG 73
Query: 59 TVIE 62
TV++
Sbjct: 74 TVVQ 77
>sp|O48650|SUI1_SALBA Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1
Length = 113
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
PFA+A VH+R+QQRNGRK+LTTVQGL +Y KI++ KKEF CNGTV
Sbjct: 14 PFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTV 73
Query: 61 IE 62
++
Sbjct: 74 VQ 75
>sp|P61220|EIF1B_PIG Eukaryotic translation initiation factor 1b OS=Sus scrofa
GN=EIF1B PE=3 SV=1
Length = 113
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 6/66 (9%)
Query: 1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
PFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct: 12 PFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69
Query: 57 NGTVIE 62
NGTVIE
Sbjct: 70 NGTVIE 75
>sp|Q9CXU9|EIF1B_MOUSE Eukaryotic translation initiation factor 1b OS=Mus musculus
GN=Eif1b PE=2 SV=2
Length = 113
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 6/66 (9%)
Query: 1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
PFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct: 12 PFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69
Query: 57 NGTVIE 62
NGTVIE
Sbjct: 70 NGTVIE 75
>sp|Q4R4X9|EIF1B_MACFA Eukaryotic translation initiation factor 1b OS=Macaca
fascicularis GN=EIF1B PE=3 SV=1
Length = 113
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 6/66 (9%)
Query: 1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
PFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct: 12 PFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69
Query: 57 NGTVIE 62
NGTVIE
Sbjct: 70 NGTVIE 75
>sp|O60739|EIF1B_HUMAN Eukaryotic translation initiation factor 1b OS=Homo sapiens
GN=EIF1B PE=1 SV=2
Length = 113
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 6/66 (9%)
Query: 1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
PFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct: 12 PFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69
Query: 57 NGTVIE 62
NGTVIE
Sbjct: 70 NGTVIE 75
>sp|Q5RFF4|EIF1_PONAB Eukaryotic translation initiation factor 1 OS=Pongo abelii
GN=EIF1 PE=3 SV=1
Length = 113
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 6/66 (9%)
Query: 1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
PFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct: 12 PFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69
Query: 57 NGTVIE 62
NGTVIE
Sbjct: 70 NGTVIE 75
>sp|P41567|EIF1_HUMAN Eukaryotic translation initiation factor 1 OS=Homo sapiens
GN=EIF1 PE=1 SV=1
Length = 113
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 6/66 (9%)
Query: 1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
PFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct: 12 PFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69
Query: 57 NGTVIE 62
NGTVIE
Sbjct: 70 NGTVIE 75
>sp|Q5E938|EIF1_BOVIN Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1
PE=3 SV=1
Length = 113
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 6/66 (9%)
Query: 1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
PFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct: 12 PFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69
Query: 57 NGTVIE 62
NGTVIE
Sbjct: 70 NGTVIE 75
>sp|P48024|EIF1_MOUSE Eukaryotic translation initiation factor 1 OS=Mus musculus
GN=Eif1 PE=2 SV=2
Length = 113
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 6/66 (9%)
Query: 1 PFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 56
PFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FAC
Sbjct: 12 PFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69
Query: 57 NGTVIE 62
NGTVIE
Sbjct: 70 NGTVIE 75
>sp|Q9SM41|SUI1_SPOST Protein translation factor SUI1 homolog OS=Sporobolus stapfianus
PE=3 SV=1
Length = 115
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 1 PFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 58
PF++A G VH+RIQQRNGRK+LTTVQGL E+ KI++ KKEF CNG
Sbjct: 14 PFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNG 73
Query: 59 TVIE 62
TV++
Sbjct: 74 TVVQ 77
>sp|O82569|SUI1_PIMBR Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa
PE=3 SV=1
Length = 113
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 38/61 (62%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
PFA+A VHIRIQQRNGRK+LTTVQGL E KI++ KK CNGTV
Sbjct: 14 PFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTV 73
Query: 61 I 61
+
Sbjct: 74 V 74
>sp|P51971|EIF1_CHICK Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus
gallus GN=EIF1 PE=3 SV=1
Length = 79
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 38/41 (92%)
Query: 22 IQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIE 62
IQQRNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIE
Sbjct: 1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIE 41
>sp|A4YIU6|SUI1_METS5 Protein translation factor SUI1 homolog OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=Msed_2210 PE=3 SV=1
Length = 99
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 14 QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV----IEVSRD 66
++ + I++++R K +T ++GL + DLKKI K + A GTV IE+ D
Sbjct: 20 EEQFIKIKLEKRRYGKEVTVIEGLGDDADLKKIASELKSKLAAGGTVKNGRIEIQGD 76
>sp|Q975S0|SUI1_SULTO Protein translation factor SUI1 homolog OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_03500 PE=3 SV=1
Length = 100
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 14 QDGLVHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTV 60
++ + I++++R K +T ++GLS S+ +LKKI K + A GTV
Sbjct: 20 EEQFIKIKVEKRRYGKEVTIIEGLSGSDVELKKIASELKSKLAAGGTV 67
>sp|Q4JAE7|SUI1_SULAC Protein translation factor SUI1 homolog OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929
/ NBRC 15157 / NCIMB 11770) GN=Saci_0865 PE=3 SV=1
Length = 99
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 14 QDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTV 60
++ + I++++R K +T V+G+S+ E +LKKI K + A GTV
Sbjct: 19 EEQFIKIKVEKRRYGKEVTIVEGISNDETELKKIASELKSKLAAGGTV 66
>sp|Q9YBG9|SUI1_AERPE Protein translation factor SUI1 homolog OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC
100138 / K1) GN=APE_1629 PE=3 SV=1
Length = 101
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 13 VQDGLVHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGT 59
V++ ++ IR+++R + +T ++G++ E++LKK+ K A GT
Sbjct: 20 VEEQIIKIRLEKRRFGREVTIIEGINEKEFNLKKLASTLKSRLATGGT 67
>sp|Q3IU96|SUI1_NATPD Protein translation factor SUI1 homolog OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=NP_0388A PE=3 SV=1
Length = 97
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 18 VHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTV 60
++IRI +R K +T ++G + DL + K +FAC GTV
Sbjct: 27 INIRIDERRYGKEVTVIEGFDPQDVDLDSLSSDLKSKFACGGTV 70
>sp|A8AC05|SUI1_IGNH4 Protein translation factor SUI1 homolog OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=Igni_1281
PE=3 SV=1
Length = 104
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 14 QDGLVHIRIQQRNGRKTLTTVQGLSSEYD-LKKIVRACKKEFACNGTV 60
Q L+ I++++R + +T ++GL+ + + LKK+ + K + A GTV
Sbjct: 24 QQELIKIKLEKRKWGREVTIIEGLNLDNERLKKVAKQLKSKLATGGTV 71
>sp|Q46F27|SUI1_METBF Protein translation factor SUI1 homolog OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=Mbar_A0534 PE=3 SV=1
Length = 102
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 18 VHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTV 60
+ +++ +R K +T V+G +SE DL ++ K +FAC GTV
Sbjct: 28 ITVKVNRRRYGKEVTVVEGFDASEIDLHELSTYLKSKFACGGTV 71
>sp|Q8TIT3|SUI1_METAC Protein translation factor SUI1 homolog OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_4059 PE=3 SV=1
Length = 102
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 18 VHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTV 60
+ +++ +R K +T V+G +SE DL ++ K +FAC GTV
Sbjct: 28 ITVKVNRRRYGKEVTVVEGFDASEIDLHELSTYLKSKFACGGTV 71
>sp|Q9HME3|SUI1_HALSA Protein translation factor SUI1 homolog OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_2584C PE=3 SV=1
Length = 97
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 18 VHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTV 60
+ IRI +R K +T ++G + DL + K +FAC GTV
Sbjct: 27 IEIRIDERRYGKEVTVIEGFDPKDVDLDSLSSDLKSKFACGGTV 70
>sp|B0R868|SUI1_HALS3 Protein translation factor SUI1 homolog OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1)
GN=OE_4626R PE=3 SV=1
Length = 97
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 18 VHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTV 60
+ IRI +R K +T ++G + DL + K +FAC GTV
Sbjct: 27 IEIRIDERRYGKEVTVIEGFDPKDVDLDSLSSDLKSKFACGGTV 70
>sp|Q8PYK3|SUI1_METMA Protein translation factor SUI1 homolog OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=MM_0858 PE=3 SV=1
Length = 102
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 18 VHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTV 60
+ +++ +R K +T V+G +SE DL ++ K +FAC GTV
Sbjct: 28 ITVKVNRRRYGKEVTVVEGFDASEIDLHELSTYLKSKFACGGTV 71
>sp|Q12472|YD21B_YEAST Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-DR1 PE=1 SV=3
Length = 1770
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
P D S D D V I + R+T +++ G+ + ++ ++ K+ N T
Sbjct: 1147 PLPDLTNKSPTDTSD--VSKDIPHIHSRQTNSSLGGMD-DSNVLTTTKSKKRSLEDNETE 1203
Query: 61 IEVSRDTFPLCDFYRATPSRGKNRV 85
IEVSRDT+ + P R K R+
Sbjct: 1204 IEVSRDTWNNKNMRSLEPPRSKKRI 1228
>sp|Q07791|YD23B_YEAST Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-DR3 PE=3 SV=1
Length = 1770
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
P D S D D V I + R+T +++ G+ + ++ ++ K+ N T
Sbjct: 1147 PLPDLTNKSPTDTSD--VSKDIPHIHSRQTNSSLGGMD-DSNVLTTTKSKKRSLEDNETE 1203
Query: 61 IEVSRDTFPLCDFYRATPSRGKNRV 85
IEVSRDT+ + P R K R+
Sbjct: 1204 IEVSRDTWNNKNMRSLEPPRSKKRI 1228
>sp|Q12491|YB21B_YEAST Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-B PE=1 SV=1
Length = 1770
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
P D S D D V I + R+T +++ G+ + ++ ++ K+ N T
Sbjct: 1147 PLPDLTNKSPTDTSD--VSKDIPHIHSRQTNSSLGGMD-DSNVLTTTKSKKRSLEDNETE 1203
Query: 61 IEVSRDTFPLCDFYRATPSRGKNRV 85
IEVSRDT+ + P R K R+
Sbjct: 1204 IEVSRDTWNNKNMRSLEPPRSKKRI 1228
>sp|Q12501|YO22B_YEAST Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-OR2 PE=3 SV=1
Length = 1770
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
P D S D D V I + R+T +++ G+ + ++ ++ K+ N T
Sbjct: 1147 PLPDLTHKSPTDTSD--VSKDIPHIHSRQTNSSLGGMD-DSNVLTTTKSKKRSLEDNETE 1203
Query: 61 IEVSRDTFPLCDFYRATPSRGKNRV 85
IEVSRDT+ + P R K R+
Sbjct: 1204 IEVSRDTWNNKNMRSLEPPRSKKRI 1228
>sp|P0C2J3|YL21B_YEAST Transposon Ty2-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-LR1 PE=3 SV=1
Length = 1770
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
P D S D D V I + R+T +++ G+ + ++ ++ K+ N T
Sbjct: 1147 PLPDLTHKSPTDTSD--VSKDIPHIHSRQTNSSLGGMD-DSNVLTTTKSKKRSLEDNETE 1203
Query: 61 IEVSRDTFPLCDFYRATPSRGKNRV 85
IEVSRDT+ + P R K R+
Sbjct: 1204 IEVSRDTWNNKNMRSLEPPRSKKRI 1228
>sp|P0CX64|YG22B_YEAST Transposon Ty2-GR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-GR2 PE=2 SV=1
Length = 1770
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
P D S D D V I + R+T +++ G+ + ++ ++ K+ N T
Sbjct: 1147 PLPDLTHKSPTDTSD--VSKDIPHIHSRQTNSSLGGMD-DSNVLTTTKSKKRSLEDNETE 1203
Query: 61 IEVSRDTFPLCDFYRATPSRGKNRV 85
IEVSRDT+ + P R K R+
Sbjct: 1204 IEVSRDTWNNKNMRSLEPPRSKKRI 1228
>sp|Q12337|YG21B_YEAST Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-GR1 PE=5 SV=2
Length = 1770
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
P D S D D V I + R+T +++ G+ + ++ ++ K+ N T
Sbjct: 1147 PLPDLTHKSPTDTSD--VSKDIPHIHSRQTNSSLGGMD-DSNVLTTTKSKKRSLEDNETE 1203
Query: 61 IEVSRDTFPLCDFYRATPSRGKNRV 85
IEVSRDT+ + P R K R+
Sbjct: 1204 IEVSRDTWNNKNMRSLEPPRSKKRI 1228
>sp|P0CX63|YF21B_YEAST Transposon Ty2-F Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-F PE=2 SV=1
Length = 1770
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
P D S D D V I + R+T +++ G+ + ++ ++ K+ N T
Sbjct: 1147 PLPDLTHKSPTDTSD--VSKDIPHIHSRQTNSSLGGMD-DSNVLTTTKSKKRSLEDNETE 1203
Query: 61 IEVSRDTFPLCDFYRATPSRGKNRV 85
IEVSRDT+ + P R K R+
Sbjct: 1204 IEVSRDTWNNKNMRSLEPPRSKKRI 1228
>sp|Q12113|YO21B_YEAST Transposon Ty2-OR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-OR1 PE=3 SV=1
Length = 1770
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
P D S D D V I + R+T +++ G+ + ++ ++ K+ N T
Sbjct: 1147 PLPDLTHQSPTDTSD--VSKDIPHIHSRQTNSSLGGMD-DSNVLTTTKSKKRSLEDNETE 1203
Query: 61 IEVSRDTFPLCDFYRATPSRGKNRV 85
IEVSRDT+ + P R K R+
Sbjct: 1204 IEVSRDTWNNKNMRSLEPPRSKKRI 1228
>sp|P25384|YC21B_YEAST Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-C PE=1 SV=2
Length = 1770
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
P D S D D V I + R+T +++ G+ + ++ ++ K+ N T
Sbjct: 1147 PLPDLTHQSPTDTSD--VSKDIPHIHSRQTNSSLGGMD-DSNVLTTTKSKKRSLEDNETE 1203
Query: 61 IEVSRDTFPLCDFYRATPSRGKNRV 85
IEVSRDT+ + P R K R+
Sbjct: 1204 IEVSRDTWNNKNMRSLEPPRSKKRI 1228
>sp|Q5UZP9|SUI1_HALMA Protein translation factor SUI1 homolog OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=sui1 PE=3 SV=1
Length = 97
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 18 VHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTV 60
++IRI +R K +T ++G + D+ + K +FAC GTV
Sbjct: 27 INIRIDERRYGKEVTIIEGFDPKDVDMDSLSSDLKSKFACGGTV 70
>sp|P0C2J5|YL22B_YEAST Transposon Ty2-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-LR2 PE=5 SV=1
Length = 1598
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
P D S D D V I + R+T +++ G+ + ++ ++ K+ N T
Sbjct: 1147 PLPDLTHKSPTDTSD--VSKDIPHIHSRQTNSSLGGMD-DSNVLTTTKSKKRSLEDNETE 1203
Query: 61 IEVSRDTFPLCDFYRATPSRGKNRV 85
IEVSRDT+ + P R K R+
Sbjct: 1204 IEVSRDTWNNKNMRSLEPPRSKKRI 1228
>sp|Q03494|YD22B_YEAST Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY2B-DR2 PE=2 SV=2
Length = 1770
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
P D S D D V I + R+T +++ G+ + ++ ++ K+ N T
Sbjct: 1147 PLPDLTHKSPTDTSD--VAKDIPHIHSRQTNSSLGGMD-DSNVLTTTKSKKRSLEDNETE 1203
Query: 61 IEVSRDTFPLCDFYRATPSRGKNRV 85
IEVSRDT+ + P R K R+
Sbjct: 1204 IEVSRDTWNNKNMRSLEPPRSKKRI 1228
>sp|Q12UF1|SUI1_METBU Protein translation factor SUI1 homolog OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_2049 PE=3 SV=1
Length = 102
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 18 VHIRIQQRNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTV 60
+ +++ +R K +T V+G ++E DL ++ K +FAC GTV
Sbjct: 28 ITVKVNRRRYGKEVTVVEGFDANEIDLHELSTYLKSKFACGGTV 71
>sp|A6SIZ0|DENR_BOTFB Translation machinery-associated protein 22 OS=Botryotinia
fuckeliana (strain B05.10) GN=tma22 PE=3 SV=1
Length = 197
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 18 VHIRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEVS 64
+ I+ +RN RK +T VQGL + +LKK+ + FA +V +V+
Sbjct: 103 IRIKRVERNKRKYVTEVQGLEAFGLELKKVAKEFGSRFATGSSVTKVA 150
>sp|Q2FTC8|SUI1_METHJ Protein translation factor SUI1 homolog OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=Mhun_2911 PE=3 SV=1
Length = 101
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 18 VHIRIQQRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTV 60
+++++ +R K +T ++GL ++ DL+ + + K + AC GTV
Sbjct: 28 INVKVNKRRYGKEVTVIEGLDPTDIDLEDLSKFMKSKLACGGTV 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,348,303
Number of Sequences: 539616
Number of extensions: 1188349
Number of successful extensions: 2877
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2849
Number of HSP's gapped (non-prelim): 67
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)