RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14757
(90 letters)
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta
protein; NMR {Saccharomyces cerevisiae}
Length = 108
Score = 86.5 bits (214), Expect = 5e-24
Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 1 PFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 60
PFAD G ++ +HIRIQQRNGRKTLTTVQG+ EYDLK+I++ KK+FACNG +
Sbjct: 11 PFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNI 68
Query: 61 IE 62
++
Sbjct: 69 VK 70
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_F
Length = 101
Score = 81.1 bits (200), Expect = 5e-22
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 4 DAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIE 62
D + D +HIR++QR GRK TTV+G+ E+D +KI++ KK +CN T++E
Sbjct: 5 DFQFENNIDDFQTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKWLSCNATIVE 63
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens}
SCOP: d.64.1.1
Length = 126
Score = 80.4 bits (198), Expect = 2e-21
Identities = 42/64 (65%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 1 PFADAFKGSEDDV--QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 58
PFADA KG + + +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FACNG
Sbjct: 25 PFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNG 84
Query: 59 TVIE 62
TVIE
Sbjct: 85 TVIE 88
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region;
alpha-beta plait, open-faced beta sandwich,
ferredoxin-like fold; NMR {Escherichia coli} SCOP:
d.64.1.1
Length = 116
Score = 48.7 bits (116), Expect = 3e-09
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 14 QDGLVHIRIQ-QRNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIE 62
DG+V I+ Q K + + G+ + +L K+ KK+ C G V +
Sbjct: 29 GDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.21
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 19 HIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTF 68
+ I NG K L V G L + +K A +G ++ SR F
Sbjct: 365 QVEISLVNGAKNL-VVSGPPQ--SLYGLNLTLRKAKAPSG--LDQSRIPF 409
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 25.6 bits (55), Expect = 2.6
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 19 HIRIQQRNGRKTLTTVQGLSSEYDL 43
I+I R+G+ + SS +L
Sbjct: 59 LIKIFHRDGKYGFSDPLTFSSVVEL 83
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 24.9 bits (55), Expect = 3.1
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 19 HIRIQQRNGRKTLTTVQGLSSEYDL 43
I+I R+G+ + SS +L
Sbjct: 60 LIKIFHRDGKYGFSDPLTFSSVVEL 84
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
3ac0_A*
Length = 845
Score = 25.3 bits (55), Expect = 3.9
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 34 VQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTF 68
V+G+ E + A K F CN E R +
Sbjct: 133 VKGMQGEG-----IAATVKHFVCNDL--EDQRFSS 160
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 24.9 bits (54), Expect = 4.1
Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 20/72 (27%)
Query: 14 QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSRDTFPLCDF 73
Q G ++RIQ G +L F C V++ L
Sbjct: 66 QSGTKNLRIQCEGGSFSL----------QSDPRSTQPVPRFDC---VLK-------LVHH 105
Query: 74 YRATPSRGKNRV 85
Y P +
Sbjct: 106 YMPPPGTPSFSL 117
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; 2.00A {Enterococcus faecalis} SCOP:
d.157.1.10
Length = 429
Score = 25.0 bits (55), Expect = 4.3
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 2 FADAFKGSEDDVQDGLVHIRIQQRNGRKTLTT 33
A SE+D+ LV + ++ N + T
Sbjct: 229 PAQIAVVSEEDLVQHLVRLELENPNRQITFNG 260
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 24.6 bits (54), Expect = 5.9
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 17 LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFA 55
L +R + + + L +L + KK F
Sbjct: 461 LSFMRANKDSLLDHIRQTGELPDTKELDAAIEEFKKGFT 499
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 24.0 bits (52), Expect = 6.9
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 14 QDGLVHIRIQQRNGRKTLTTVQGL 37
+H RI+ NGR + +
Sbjct: 67 HGKTLHTRIEHSNGRFSFYEQPDV 90
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 24.1 bits (53), Expect = 9.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 14 QDGLVHI 20
QDGLVHI
Sbjct: 678 QDGLVHI 684
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,353,727
Number of extensions: 65921
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 14
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)