RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14757
         (90 letters)



>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
          eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 83.0 bits (205), Expect = 7e-23
 Identities = 42/64 (65%), Positives = 51/64 (79%), Gaps = 2/64 (3%)

Query: 1  PFADAFKGSED--DVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 58
          PFADA KG +      +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KK+FACNG
Sbjct: 25 PFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNG 84

Query: 59 TVIE 62
          TVIE
Sbjct: 85 TVIE 88


>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 51.9 bits (125), Expect = 3e-11
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 15 DGLVHIRIQQRNGR--KTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIE 62
          DG+V I+ Q  +GR  K +  + G+   + +L K+    KK+  C G V +
Sbjct: 3  DGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD 52


>d2o0qa1 d.166.1.7 (A:2-114) Hypothetical protein CC0527
          {Caulobacter crescentus [TaxId: 155892]}
          Length = 113

 Score = 24.8 bits (54), Expect = 1.4
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 20/79 (25%)

Query: 6  FKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEVSR 65
          F+GS  D+ DG +H                 LS+    ++      K F     ++ ++ 
Sbjct: 21 FEGSAVDLADGFIH-----------------LSAGEQAQETA---AKWFRGQANLVLLAV 60

Query: 66 DTFPLCDFYRATPSRGKNR 84
          +  PL +  +   SRG  R
Sbjct: 61 EAEPLGEDLKWEASRGGAR 79


>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 75

 Score = 23.6 bits (51), Expect = 2.2
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 39 SEYDLKKIVRACKKEFACNGTVIEVS 64
          +E + +  V+A  K F  +G + E+ 
Sbjct: 48 NEAEAEGCVQALHKSFFESGDLSELL 73


>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 305

 Score = 23.7 bits (51), Expect = 3.7
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 8/56 (14%)

Query: 11  DDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFA-----CNGTVI 61
            D+++  + + I     RK L       S +D K+  +  +         C G ++
Sbjct: 72  SDIKNEALELGI---PERKILNGKFFFISNFDFKRYCKLIENPITIISDDCWGGLV 124


>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
           {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
          Length = 653

 Score = 23.7 bits (51), Expect = 3.7
 Identities = 4/17 (23%), Positives = 6/17 (35%)

Query: 73  FYRATPSRGKNRVGGNP 89
            +R       N VG + 
Sbjct: 397 LFRYNRLISINEVGSDL 413


>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain
           3 {Bacillus sp., strain ps3 [TaxId: 1409]}
          Length = 131

 Score = 23.3 bits (50), Expect = 4.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 37  LSSEYDLKKIVRACKKEFA 55
           L +E DL + + A KK F 
Sbjct: 110 LPNEDDLNQAIEAFKKTFV 128


>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 145

 Score = 22.8 bits (49), Expect = 8.5
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 45 KIVRACKKEFACNGTVIEVSR 65
          K++  C++    NG VI    
Sbjct: 79 KVIEICRQTKDMNGGVISFQE 99


>d1svda2 d.58.9.1 (A:16-142) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Archaeon Halothiobacillus
          neapolitanus [TaxId: 927]}
          Length = 127

 Score = 22.3 bits (48), Expect = 9.9
 Identities = 6/20 (30%), Positives = 8/20 (40%)

Query: 57 NGTVIEVSRDTFPLCDFYRA 76
           GT   V  D     D+Y+ 
Sbjct: 41 TGTWTTVWTDLLTDMDYYKG 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 331,896
Number of extensions: 13326
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 11
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)