BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14758
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VZS3|SUI1_DROME Protein translation factor SUI1 homolog OS=Drosophila
melanogaster GN=CG17737 PE=1 SV=1
Length = 110
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 55/60 (91%)
Query: 8 SDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
+L DPFADA KG++DD+QDGLVHIRIQQRNGRKTLTTVQGLS+EYDLKKIVR+CKK+
Sbjct: 4 QNLNTRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKE 63
>sp|P42678|SUI1_ANOGA Protein translation factor SUI1 homolog OS=Anopheles gambiae
GN=AGAP006459 PE=3 SV=1
Length = 110
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/59 (83%), Positives = 54/59 (91%)
Query: 9 DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
+L DPFADA KG++ DVQDGLVHIRIQQRNGRKTLTTVQGLS+EYDLKKIVRACKK+
Sbjct: 5 NLNTFDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKE 63
>sp|P32911|SUI1_YEAST Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUI1 PE=1
SV=1
Length = 108
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 8 SDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 66
+L DPFAD G ++ +HIRIQQRNGRKTLTTVQG+ EYDLK+I++ KK
Sbjct: 4 ENLKSFDPFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKK 60
>sp|P79060|SUI1_SCHPO Protein translation factor sui1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sui1 PE=3 SV=3
Length = 109
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 41/55 (74%), Gaps = 4/55 (7%)
Query: 13 LDPFADAFKGSEDDVQD-GLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 66
+DPFAD +DD Q +HIRIQQRNGRKTLTTVQGL E+D K+I+RA KK
Sbjct: 10 VDPFADT---GDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKK 61
>sp|Q755R1|SUI1_ASHGO Protein translation factor SUI1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SUI1A
PE=3 SV=1
Length = 108
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 8 SDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 66
+L DPFAD G ++ +HIRIQQRNGRKTLTTVQG+ EYDLK+I++ +K
Sbjct: 4 ENLKSFDPFADT--GDDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRK 60
>sp|P48024|EIF1_MOUSE Eukaryotic translation initiation factor 1 OS=Mus musculus
GN=Eif1 PE=2 SV=2
Length = 113
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)
Query: 9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
+L DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 6 NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 55
>sp|Q5RFF4|EIF1_PONAB Eukaryotic translation initiation factor 1 OS=Pongo abelii
GN=EIF1 PE=3 SV=1
Length = 113
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)
Query: 9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
+L DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 6 NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 55
>sp|P41567|EIF1_HUMAN Eukaryotic translation initiation factor 1 OS=Homo sapiens
GN=EIF1 PE=1 SV=1
Length = 113
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)
Query: 9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
+L DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 6 NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 55
>sp|Q5E938|EIF1_BOVIN Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1
PE=3 SV=1
Length = 113
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)
Query: 9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
+L DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 6 NLHSFDPFADASKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 55
>sp|Q94JV4|SUI12_ARATH Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana
GN=At1g54290 PE=3 SV=1
Length = 113
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 35/55 (63%)
Query: 13 LDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
DPFADA VHIR+QQRNGRK+LTTVQGL EY KI++ KK+
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKE 66
>sp|P41568|SUI11_ARATH Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana
GN=At4g27130 PE=3 SV=2
Length = 113
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 35/55 (63%)
Query: 13 LDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
DPFADA VHIR+QQRNGRK+LTTVQGL EY KI++ KK+
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKE 66
>sp|Q9SQF4|SUI1_BRAOL Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3
SV=1
Length = 113
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 35/55 (63%)
Query: 13 LDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
DPFADA VHIR+QQRNGRK+LTTVQGL EY KI++ KK+
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKE 66
>sp|P61220|EIF1B_PIG Eukaryotic translation initiation factor 1b OS=Sus scrofa
GN=EIF1B PE=3 SV=1
Length = 113
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)
Query: 9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
+L DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 6 NLQSFDPFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 55
>sp|Q9CXU9|EIF1B_MOUSE Eukaryotic translation initiation factor 1b OS=Mus musculus
GN=Eif1b PE=2 SV=2
Length = 113
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)
Query: 9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
+L DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 6 NLQSFDPFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 55
>sp|Q4R4X9|EIF1B_MACFA Eukaryotic translation initiation factor 1b OS=Macaca
fascicularis GN=EIF1B PE=3 SV=1
Length = 113
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)
Query: 9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
+L DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 6 NLQSFDPFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 55
>sp|O60739|EIF1B_HUMAN Eukaryotic translation initiation factor 1b OS=Homo sapiens
GN=EIF1B PE=1 SV=2
Length = 113
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 6/52 (11%)
Query: 9 DLFMLDPFADAFKGSEDDV----QDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
+L DPFADA KG DD+ + +HIRIQQRNGRKTLTTVQG++ +YD
Sbjct: 6 NLQSFDPFADATKG--DDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYD 55
>sp|Q0D5W6|SUI1_ORYSJ Protein translation factor SUI1 homolog OS=Oryza sativa subsp.
japonica GN=GOS2 PE=3 SV=1
Length = 115
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 13 LDPFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
DPFA+A G VH+RIQQRNGRK+LTTVQGL E+ KI++ KK+
Sbjct: 12 FDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKE 68
>sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog OS=Oryza sativa subsp.
indica GN=GOS2 PE=2 SV=1
Length = 115
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 13 LDPFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
DPFA+A G VH+RIQQRNGRK+LTTVQGL E+ KI++ KK+
Sbjct: 12 FDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKE 68
>sp|O48650|SUI1_SALBA Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1
Length = 113
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 13 LDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
DPFA+A VH+R+QQRNGRK+LTTVQGL +Y KI++ KK+
Sbjct: 12 FDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKE 66
>sp|P56330|SUI1_MAIZE Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3
SV=1
Length = 115
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 13 LDPFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
DPFA+A G VH+RIQQRNGRK+LTTVQGL E+ KI++ KK+
Sbjct: 12 FDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKE 68
>sp|Q9SM41|SUI1_SPOST Protein translation factor SUI1 homolog OS=Sporobolus stapfianus
PE=3 SV=1
Length = 115
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 13 LDPFADAFKGSEDDVQDG--LVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
DPF++A G VH+RIQQRNGRK+LTTVQGL E+ KI++ KK+
Sbjct: 12 FDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKE 68
>sp|O82569|SUI1_PIMBR Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa
PE=3 SV=1
Length = 113
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 33/54 (61%)
Query: 13 LDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKK 66
DPFA+A VHIRIQQRNGRK+LTTVQGL E KI++ KK
Sbjct: 12 FDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKK 65
>sp|P51971|EIF1_CHICK Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus
gallus GN=EIF1 PE=3 SV=1
Length = 79
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/21 (80%), Positives = 20/21 (95%)
Query: 36 IQQRNGRKTLTTVQGLSSEYD 56
IQQRNGRKTLTTVQG++ +YD
Sbjct: 1 IQQRNGRKTLTTVQGIADDYD 21
>sp|Q5U504|KBTB5_XENLA Kelch repeat and BTB domain-containing protein 5 OS=Xenopus laevis
GN=kbtbd5 PE=2 SV=1
Length = 614
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 44/146 (30%)
Query: 27 VQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSK------- 79
+QDGL + + N + +QG E+ ++V A F +LS L +
Sbjct: 19 LQDGLKDM-LDHNNFIDCVLKIQG--KEFPCHRLVLASCSPYFRAMFLSDLEESKKKEID 75
Query: 80 ---CDPQKVGT--YKIFATETLVTSSELK--LSLGNLFQ------------------ASC 114
DP +G + I+ +E +T ++ S+ N+FQ ++C
Sbjct: 76 LEDVDPDVMGKILHYIYTSEIEITEKNVQDIFSVANMFQIPSIFTVCVSFLQKKLCLSNC 135
Query: 115 LGVNRAGMLLKC---------FLCDK 131
L + R G+LL C F+CD+
Sbjct: 136 LAIFRLGLLLDCPRLAVSARDFVCDR 161
>sp|Q5EB39|KBTB5_XENTR Kelch repeat and BTB domain-containing protein 5 OS=Xenopus
tropicalis GN=kbtbd5 PE=2 SV=1
Length = 614
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 44/146 (30%)
Query: 27 VQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYLSALSK------- 79
+QDGL + + N + +QG E+ ++V A F +LS L +
Sbjct: 19 LQDGLKDM-LDHDNFIDCVLKIQG--KEFPCHRLVLAACSPYFRAMFLSNLEEGKKKEID 75
Query: 80 ---CDPQKVGT--YKIFATETLVTSSELK--LSLGNLFQ------------------ASC 114
DP +G + I+ +E +T ++ S+ N+FQ ++C
Sbjct: 76 LEDVDPDVMGKILHYIYTSEIEITEKNVQDIFSVANMFQIPSIFTVCVSFLQKKLCLSNC 135
Query: 115 LGVNRAGMLLKC---------FLCDK 131
L + R G+LL C F+CD+
Sbjct: 136 LAIFRLGLLLDCPRLAVSARDFVCDR 161
>sp|Q6NDM1|FPG_RHOPA Formamidopyrimidine-DNA glycosylase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=mutM PE=3 SV=3
Length = 291
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 81 DPQKVGTYKIFATETLVTSSELK----LSLGNLFQASCLGVNRAG--MLLKCFLCDKR 132
DP++ G K+F + T LK LGN F AS L AG LK L D+R
Sbjct: 121 DPRRFGFMKVFPRSEIETEPHLKGLGPEPLGNAFDASLLAKACAGKQTSLKAALLDQR 178
>sp|B3Q620|FPG_RHOPT Formamidopyrimidine-DNA glycosylase OS=Rhodopseudomonas palustris
(strain TIE-1) GN=mutM PE=3 SV=1
Length = 291
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 81 DPQKVGTYKIFATETLVTSSELK----LSLGNLFQASCLGVNRAG--MLLKCFLCDKR 132
DP++ G K+F + T LK LGN F AS L AG LK L D+R
Sbjct: 121 DPRRFGFMKVFPRSEIETEPHLKGLGPEPLGNAFDASLLAKACAGKQTSLKAALLDQR 178
>sp|Q5MQC5|IORF_CVHN1 Protein I OS=Human coronavirus HKU1 (isolate N1) GN=N PE=3 SV=1
Length = 205
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 34 IRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFYL----SALSKCDPQKVGTYK 89
+ I Q + RK L GL++ ++ K + +K ++ L LS P G+
Sbjct: 8 LEIVQESSRKLL----GLTNLSEITKPLIEAEKPNLNSLCLLNHKEILSHIIPGSPGSLN 63
Query: 90 IFATETL----VTSSELKLSLGNLFQASCLGVNRAGMLLKCFLCDKRSC 134
ETL V L LS L + +G++ AG+LLK + +K SC
Sbjct: 64 FKKVETLNFQMVKEFPL-LSEYPLLKQKDIGIDTAGVLLKQLMVNKSSC 111
>sp|A4YIU6|SUI1_METS5 Protein translation factor SUI1 homolog OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=Msed_2210 PE=3 SV=1
Length = 99
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 28 QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
++ + I++++R K +T ++GL + DLKKI K K
Sbjct: 20 EEQFIKIKLEKRRYGKEVTVIEGLGDDADLKKIASELKSK 59
>sp|P58593|EPSB_RALSO Putative tyrosine-protein kinase EpsB OS=Ralstonia solanacearum
(strain GMI1000) GN=epsB PE=3 SV=1
Length = 751
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 8 SDLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
S L L+ D K SE Q G++ ++ +N T + +++EY + I R ++
Sbjct: 226 SRLKTLEMLQDKLKISEKGKQSGIIGASLEGKNPALTAAIMNQIATEYVAQNIKRKAEEA 285
Query: 68 RFSTFYLSAL 77
S +L L
Sbjct: 286 ERSLVFLDGL 295
>sp|Q9CXF7|CHD1L_MOUSE Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus
GN=Chd1l PE=2 SV=1
Length = 900
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 12 MLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFST 71
+L P D K S D QD L + Q R+ L+ ++ + E LKKI A KKK+ S
Sbjct: 786 LLFPIDD--KESRDKGQDLLALVVAQHRDRTNVLSGIKMAALEEGLKKIFLAAKKKKASV 843
>sp|Q6CVG0|STU1_KLULA Protein STU1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=STU1 PE=3
SV=1
Length = 1358
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 14 DPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKKRFSTFY 73
D +DA G E DG V R + KTL T G S+ K F
Sbjct: 1031 DMLSDAINGIEIKTNDGSVANR--SEDDIKTLGTNMGSVSD-----------PKTFKPIN 1077
Query: 74 LSALSKCDPQKVGTYKIFATETLVTSSELKLSLGNLFQASCLGVNRAGMLLKCFLC 129
L+ + I A+ +V ++LKL + ++ +N +LKCFLC
Sbjct: 1078 LAHFANDSLFSFELKFIDASIGIVNLTQLKLIVQSIINNGTFKMNELQYILKCFLC 1133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,631,845
Number of Sequences: 539616
Number of extensions: 1513596
Number of successful extensions: 3488
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3453
Number of HSP's gapped (non-prelim): 35
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)