RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14758
         (134 letters)



>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta
          protein; NMR {Saccharomyces cerevisiae}
          Length = 108

 Score = 73.7 bits (181), Expect = 2e-18
 Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 2/59 (3%)

Query: 9  DLFMLDPFADAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          +L   DPFAD   G ++      +HIRIQQRNGRKTLTTVQG+  EYDLK+I++  KK 
Sbjct: 5  NLKSFDPFADT--GDDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKD 61


>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens}
          SCOP: d.64.1.1
          Length = 126

 Score = 68.0 bits (166), Expect = 5e-16
 Identities = 36/60 (60%), Positives = 44/60 (73%), Gaps = 2/60 (3%)

Query: 10 LFMLDPFADAFKGSEDDV--QDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          L   DPFADA KG +      +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A KKK
Sbjct: 20 LHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKK 79


>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
          2xzn_F
          Length = 101

 Score = 65.3 bits (159), Expect = 4e-15
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 18 DAFKGSEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKK 67
          D    +  D     +HIR++QR GRK  TTV+G+  E+D +KI++  KK 
Sbjct: 5  DFQFENNIDDFQTHIHIRVEQRRGRKCFTTVEGIPPEFDYEKIMKYWKKW 54


>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region;
          alpha-beta plait, open-faced beta sandwich,
          ferredoxin-like fold; NMR {Escherichia coli} SCOP:
          d.64.1.1
          Length = 116

 Score = 38.6 bits (90), Expect = 7e-05
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 5  VWSSDLFMLDPFADAFKGSEDDVQDGLVHIRIQ-QRNGRKTLTTVQGLS-SEYDLKKIVR 62
          V+S++   +D    A         DG+V I+ Q      K +  + G+   + +L K+  
Sbjct: 9  VYSTETGRIDEPKAAP---VRPKGDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAA 65

Query: 63 ACKKK 67
            KKK
Sbjct: 66 ELKKK 70


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.9 bits (72), Expect = 0.053
 Identities = 31/139 (22%), Positives = 48/139 (34%), Gaps = 52/139 (37%)

Query: 12  MLDPFADAFKG-SEDDVQDGLV----------HIRIQQRNGRKTLTTVQGL-SSEYDLKK 59
           ML     +    +++ VQD +            + I   NG K L  V G   S Y L  
Sbjct: 338 ML-----SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-VSGPPQSLYGLNL 391

Query: 60  IVRACK---------------KKRFSTFYL--SALSKCDPQKVGTYKIFATETLVTSSEL 102
            +R  K               K +FS  +L  ++     P        F +  LV +S+L
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS-----P--------FHSHLLVPASDL 438

Query: 103 ---KLSLGNL-FQASCLGV 117
               L   N+ F A  + +
Sbjct: 439 INKDLVKNNVSFNAKDIQI 457


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 2.2
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 27/94 (28%)

Query: 3   ERVWSSDLFMLDP--FADAFKG----SEDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYD 56
             +  S L +L+P  +   F                HI          L+ +     + D
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPS------AHIPTI------LLSLIWFDVIKSD 403

Query: 57  LKKIVRACKKKRFSTFYLSALSKCDPQKVGTYKI 90
           +  +V    K          L +  P++  T  I
Sbjct: 404 VMVVVNKLHKYS--------LVEKQPKE-STISI 428


>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR
           initiative, midwest center for structural genomics,
           MCSG, U function; 2.00A {Enterococcus faecalis} SCOP:
           d.157.1.10
          Length = 429

 Score = 25.8 bits (57), Expect = 5.3
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 16  FADAFKGSEDDVQDGLVHIRIQQRNGRKTLTT 47
            A     SE+D+   LV + ++  N + T   
Sbjct: 229 PAQIAVVSEEDLVQHLVRLELENPNRQITFNG 260


>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
          transferase, polymorphism, UBL conjugation,
          phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
          sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
          1oo4_A* 2pna_A 2pnb_A
          Length = 120

 Score = 24.9 bits (55), Expect = 7.5
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 33 HIRIQQRNGRKTLTTVQGLSSEYDL 57
           I+I  R+G+   +     SS  +L
Sbjct: 60 LIKIFHRDGKYGFSDPLTFSSVVEL 84


>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
          triphosphate, wortmannin, H1047R, ATP-binding, disease
          mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
          3hiz_B 2rd0_B 4a55_B* 3mtt_A
          Length = 373

 Score = 25.2 bits (54), Expect = 9.6
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 33 HIRIQQRNGRKTLTTVQGLSSEYDL 57
           I+I  R+G+   +     SS  +L
Sbjct: 59 LIKIFHRDGKYGFSDPLTFSSVVEL 83


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,879,793
Number of extensions: 94779
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 12
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.0 bits)