RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14758
         (134 letters)



>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
          eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 75.3 bits (185), Expect = 4e-19
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 8  SDLFMLDPFADAFKGSED--DVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACK 65
           +L   DPFADA KG +      +  +HIRIQQRNGRKTLTTVQG++ +YD KK+V+A K
Sbjct: 18 QNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFK 77

Query: 66 KK 67
          KK
Sbjct: 78 KK 79


>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 39.6 bits (93), Expect = 5e-06
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 29 DGLVHIRIQQRNGR--KTLTTVQGLS-SEYDLKKIVRACKKK 67
          DG+V I+ Q  +GR  K +  + G+   + +L K+    KKK
Sbjct: 3  DGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKK 43


>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
          {Domestic duck (Anas platyrhynchos), delta-crystallin
          [TaxId: 8839]}
          Length = 449

 Score = 24.5 bits (52), Expect = 5.3
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 17/61 (27%)

Query: 14 DPFADAFKGS--------EDDVQDGLVHIRIQQRNGRKTLTTVQGLSSEYDLKKIVRACK 65
          DP  +    S        E D+Q  + + +  ++          G+ ++ +L+KI+   +
Sbjct: 2  DPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEK---------AGILTKTELEKILSGLE 52

Query: 66 K 66
          K
Sbjct: 53 K 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 459,438
Number of extensions: 18828
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 3
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.6 bits)