RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14762
(136 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 42.8 bits (99), Expect = 3e-06
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 37 YFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMN-----ATPGQFNSMWALVTYTAK- 90
+ ++ + T A+A ++ P D ++ R M + AK
Sbjct: 203 PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKD 262
Query: 91 LGPAGFFKGYFPAFVRLAPQTILTFVFLEQL 121
GP FFKG + +R V +++
Sbjct: 263 EGPKAFFKGAWSNVLRGMGGAF-VLVLYDEI 292
Score = 40.9 bits (94), Expect = 1e-05
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 45 HFLSSLTAGAIATTMTQPLDVLKTR-------AMNATPGQFNSMWALVTYTAKLGPAGFF 97
FL+ A AI+ T P++ +K + Q+ + V K F
Sbjct: 9 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 68
Query: 98 KGYFPAFV 105
A V
Sbjct: 69 WRGNLANV 76
Score = 29.3 bits (64), Expect = 0.13
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 43 TTHFLSSLTAGAIATTMTQPLDVLKTRAMNAT------PGQFNSMWALVTYTAKLGPAGF 96
+ S AGA + PLD +TR + G G
Sbjct: 112 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGL 171
Query: 97 FKGYFPAFVRLAPQ 110
++G+ + +
Sbjct: 172 YQGFNVSVQGIIIY 185
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 27.0 bits (58), Expect = 0.81
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 7 EYDEFKQSVEQLKEQLKQCK 26
E D+ +Q EQLK Q++ +
Sbjct: 3 ELDQLRQEAEQLKNQIRDAR 22
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 169
Score = 26.0 bits (56), Expect = 1.3
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 7 EYDEFKQSVEQLKEQLKQCK 26
E + + S EQ+K+ L + K
Sbjct: 149 EEEALRFSAEQVKKVLNEVK 168
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 24.9 bits (54), Expect = 1.8
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 2 KRLQGEYDEFKQSVEQLKEQLKQ 24
++ + D+ ++ LK QL++
Sbjct: 57 RKAVHQIDQLQREQRHLKRQLEK 79
>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme
disease spirochete (Borrelia burgdorferi), different
strains [TaxId: 139]}
Length = 164
Score = 25.0 bits (55), Expect = 2.9
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 49 SLTAGA--IATTMTQPLDVLKTRAMNA 73
SL +GA I+ + + L+VLK +
Sbjct: 56 SLLSGAYAISDLIAEKLNVLKNEELKE 82
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId:
1172]}
Length = 105
Score = 24.4 bits (52), Expect = 3.0
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 86 TYTAKLGPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFGFIKEESPQT 135
TYT KLG + PA + + P + F+ + N F +P
Sbjct: 2 TYTVKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAK 51
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 172
Score = 24.8 bits (53), Expect = 3.3
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 7 EYDEFKQSVEQLKEQLKQCK 26
E + K+S + L + K K
Sbjct: 152 EVAQLKKSADTLWDIQKDLK 171
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 168
Score = 24.8 bits (53), Expect = 3.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 7 EYDEFKQSVEQLKEQLKQCK 26
E F++S E +K+ ++ K
Sbjct: 147 EIIAFRKSAEIIKKYCEEVK 166
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 24.8 bits (53), Expect = 3.8
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 91 LGPA--GFFKG-YFPAFVRLAPQTILTFVFLEQLR 122
LGPA G +P+ + Q + ++ + R
Sbjct: 176 LGPAFRGLKGRTLYPSVSAVWGQCQVRIRYMGERR 210
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD,
receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Length = 140
Score = 24.6 bits (53), Expect = 4.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 2 KRLQGEYDEFKQSVEQLKEQLK 23
+RL E +++ E E LK
Sbjct: 119 RRLVMENRSLRRAAEAASEGLK 140
>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus
halodurans [TaxId: 86665]}
Length = 138
Score = 24.4 bits (52), Expect = 4.3
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 59 MTQPLDVLKTRAMNATPGQFNSMWALVTYTAKLG----PAGFFKGYFPAFVRLAPQTILT 114
MT+ D+ K NA + +W V+ + L F +P
Sbjct: 1 MTRLPDIKKEVRFNAPIEK---VWEAVSTSEGLAFWFMENDLKAETGHHFHLQSPFGPSP 57
Query: 115 FVFLE 119
+
Sbjct: 58 CQVTD 62
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 23.6 bits (51), Expect = 4.7
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 1 MKRLQGEYDEFKQSVEQLKEQLKQCK 26
M LQ + D K+ + + LK K
Sbjct: 4 MMNLQTKIDAKKEQLADARRDLKSAK 29
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
9606]}
Length = 80
Score = 23.7 bits (51), Expect = 5.1
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 1 MKRLQGEYDEFKQSVEQLKEQLKQCKTVK 29
++ LQ + KQ L+ + + K++K
Sbjct: 52 IRFLQHSNQKLKQENLSLRTAVHKSKSLK 80
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish
(Squalus acanthias) [TaxId: 7797]}
Length = 169
Score = 24.0 bits (51), Expect = 6.9
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 7 EYDEFKQSVEQLKEQLKQCK 26
E + ++S L + K K
Sbjct: 149 EEQQLQKSATTLWDIQKDLK 168
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 23.7 bits (51), Expect = 8.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 7 EYDEFKQSVEQLKEQLKQCK 26
+ ++ Q +EQLK QL+ K
Sbjct: 9 QLEQMAQQLEQLKSQLETQK 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.388
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 465,419
Number of extensions: 18225
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 23
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.9 bits)