Query psy14763
Match_columns 136
No_of_seqs 107 out of 1144
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 20:00:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 9.3E-29 3.2E-33 177.4 10.2 126 3-128 159-289 (303)
2 2lck_A Mitochondrial uncouplin 99.9 7.8E-26 2.7E-30 162.2 13.7 126 3-129 62-196 (303)
3 1okc_A ADP, ATP carrier protei 99.9 6E-26 2E-30 162.3 12.9 118 5-125 174-297 (297)
4 1okc_A ADP, ATP carrier protei 99.9 2.6E-25 8.8E-30 159.0 15.0 126 3-128 65-204 (297)
5 3tgu_G UQCRQ, mitochondrial ub 41.0 21 0.00073 20.0 2.4 28 100-127 41-68 (81)
6 2pso_A STAR-related lipid tran 39.1 19 0.00065 24.2 2.4 38 98-136 199-236 (237)
7 1pp9_G Ubiquinol-cytochrome C 31.8 35 0.0012 19.1 2.3 31 97-127 38-68 (81)
8 2l5r_A Antimicrobial peptide a 24.9 17 0.00058 15.1 0.1 18 86-103 3-20 (26)
9 2acm_A Mucin-1; auto-catalytic 24.8 18 0.00063 19.0 0.3 19 79-97 40-59 (66)
10 3f2e_A SIRV coat protein; four 23.9 39 0.0013 18.8 1.5 31 77-107 7-42 (100)
11 1y9i_A Low temperature require 20.5 1.1E+02 0.0037 19.9 3.3 42 18-59 113-159 (178)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.96 E-value=9.3e-29 Score=177.44 Aligned_cols=126 Identities=29% Similarity=0.460 Sum_probs=112.8
Q ss_pred ccchhHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhCCCCC
Q psy14763 3 RLQGEYDEFKQS----VEQLKEQLKQCKTVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATPGQF 78 (136)
Q Consensus 3 ~~rG~~~~~~~~----~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~ag~~a~~~~~~~~~P~d~vktr~q~~~~~~~ 78 (136)
+++|+|+|+... ++.++++|.+||.+|+.+.+.....++....+++|++||++++++++|+|+||+|+|++....|
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y 238 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQY 238 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSC
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccccc
Confidence 466777777666 5678999999999999987665445677889999999999999999999999999999876779
Q ss_pred CcHHHHHHHHHHh-CccccccchhHHHhhHhHHHHHHHHHHHHHHHHhcCc
Q psy14763 79 NSMWALVTYTAKL-GPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFGFI 128 (136)
Q Consensus 79 ~~~~~~~~~i~~~-G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~k~~~~~~ 128 (136)
.++++|+++++++ |++|||||+.|+++|.+|..+++|.+||.+|+.+...
T Consensus 239 ~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 239 HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp CSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999999999999999999999999987653
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.94 E-value=7.8e-26 Score=162.23 Aligned_cols=126 Identities=19% Similarity=0.210 Sum_probs=109.4
Q ss_pred ccchhHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhCC---
Q psy14763 3 RLQGEYDEFKQS----VEQLKEQLKQCKTVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATP--- 75 (136)
Q Consensus 3 ~~rG~~~~~~~~----~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~ag~~a~~~~~~~~~P~d~vktr~q~~~~--- 75 (136)
+++|+|+|+..+ ++..+++|.+||.+|+.+.+..+ +.+....+++|++||+++.++++|+|+||+|+|++..
T Consensus 62 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~ 140 (303)
T 2lck_A 62 GPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGG 140 (303)
T ss_dssp CHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCC
T ss_pred CHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCC
Confidence 345555555554 66789999999999999876532 4677889999999999999999999999999999763
Q ss_pred -CCCCcHHHHHHHHHHh-CccccccchhHHHhhHhHHHHHHHHHHHHHHHHhcCcC
Q psy14763 76 -GQFNSMWALVTYTAKL-GPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFGFIK 129 (136)
Q Consensus 76 -~~~~~~~~~~~~i~~~-G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~k~~~~~~~ 129 (136)
..|.+..+++++|+++ |++|||||+.|++++.+|..+++|.+||.+|+.+....
T Consensus 141 ~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 141 GRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp SSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3689999999999999 99999999999999999999999999999999987643
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.94 E-value=6e-26 Score=162.31 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=97.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhCC-----CCCC
Q psy14763 5 QGEYDEFKQSVEQLKEQLKQCKTVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATP-----GQFN 79 (136)
Q Consensus 5 rG~~~~~~~~~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~ag~~a~~~~~~~~~P~d~vktr~q~~~~-----~~~~ 79 (136)
||+...+.+.++.++++|.+||.+|+.+.+.. +.+....+++|++|+++++++++|+|+||+|+|++.. ..|.
T Consensus 174 rG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~ 251 (297)
T 1okc_A 174 QGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYT 251 (297)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCC
Confidence 44444444457778999999999999875432 4567788999999999999999999999999999753 2589
Q ss_pred cHHHHHHHHHHh-CccccccchhHHHhhHhHHHHHHHHHHHHHHHHh
Q psy14763 80 SMWALVTYTAKL-GPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNF 125 (136)
Q Consensus 80 ~~~~~~~~i~~~-G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~k~~~ 125 (136)
++++|+++|+++ |++|||||+.|+++|. +..+++|.+||.+|+++
T Consensus 252 ~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 252 GTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp SHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 999999999999 9999999999999995 57899999999988753
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.93 E-value=2.6e-25 Score=159.02 Aligned_cols=126 Identities=14% Similarity=0.075 Sum_probs=104.6
Q ss_pred ccchhHHHHH----HHHHHHHHHHHHHHHHHHhhccCCCCCC----CHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhhC
Q psy14763 3 RLQGEYDEFK----QSVEQLKEQLKQCKTVKLGLLSTPYFED----NATTHFLSSLTAGAIATTMTQPLDVLKTRAMNAT 74 (136)
Q Consensus 3 ~~rG~~~~~~----~~~~~~~~~f~~y~~~k~~~~~~~~~~~----~~~~~~~ag~~a~~~~~~~~~P~d~vktr~q~~~ 74 (136)
+++|+|+|+. +.++.++++|.+||.+|+.+.+..+.+. .....+++|++||++++++++|+|+||+|+|++.
T Consensus 65 G~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~ 144 (297)
T 1okc_A 65 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV 144 (297)
T ss_dssp CGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred chhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccc
Confidence 3455555554 4467789999999999996543322222 3466899999999999999999999999999975
Q ss_pred C-----CCCCcHHHHHHHHHHh-CccccccchhHHHhhHhHHHHHHHHHHHHHHHHhcCc
Q psy14763 75 P-----GQFNSMWALVTYTAKL-GPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFGFI 128 (136)
Q Consensus 75 ~-----~~~~~~~~~~~~i~~~-G~~g~y~G~~~~~~~~~~~~~~~~~~ye~~k~~~~~~ 128 (136)
. ..|.++.+++++++++ |++|||||+.|++++.+|..+++|.+||.+|+.+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 145 GKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp CSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred cCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 2 3589999999999999 9999999999999999999999999999999987543
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=41.01 E-value=21 Score=20.03 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=22.2
Q ss_pred hhHHHhhHhHHHHHHHHHHHHHHHHhcC
Q psy14763 100 YFPAFVRLAPQTILTFVFLEQLRLNFGF 127 (136)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~ye~~k~~~~~ 127 (136)
+...++..+|..++.+.+|+..++....
T Consensus 41 ~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 41 FSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 3566777899999999999998877544
No 6
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=39.10 E-value=19 Score=24.22 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=22.0
Q ss_pred cchhHHHhhHhHHHHHHHHHHHHHHHHhcCcCCCCCCCC
Q psy14763 98 KGYFPAFVRLAPQTILTFVFLEQLRLNFGFIKEESPQTK 136 (136)
Q Consensus 98 ~G~~~~~~~~~~~~~~~~~~ye~~k~~~~~~~~~~~~~~ 136 (136)
+|..|..+ +....-...-....+++.+.....+.|++|
T Consensus 199 ~G~iP~~l-n~~~~~~~~~~l~~LR~~~~~~~~~~~~~~ 236 (237)
T 2pso_A 199 KGHSPEWY-SKGFGHLCAAEVARIRNSFQPLIAEGPETK 236 (237)
T ss_dssp SSSCTTTT-TTHHHHHHHHHHHHHHHTTSCC--------
T ss_pred CCCchHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccC
Confidence 57777777 554555666678888888888888888776
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=31.84 E-value=35 Score=19.09 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=23.3
Q ss_pred ccchhHHHhhHhHHHHHHHHHHHHHHHHhcC
Q psy14763 97 FKGYFPAFVRLAPQTILTFVFLEQLRLNFGF 127 (136)
Q Consensus 97 y~G~~~~~~~~~~~~~~~~~~ye~~k~~~~~ 127 (136)
+|-+.-+++..+|..++.+.+|+..++....
T Consensus 38 ~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~ 68 (81)
T 1pp9_G 38 LRRTRACILRVAPPFVAFYLVYTWGTQEFEK 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcceeeehhHHHHHHHHHHHHHHHHH
Confidence 3344556667889999999999998877644
No 8
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=24.90 E-value=17 Score=15.12 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=9.3
Q ss_pred HHHHHhCccccccchhHH
Q psy14763 86 TYTAKLGPAGFFKGYFPA 103 (136)
Q Consensus 86 ~~i~~~G~~g~y~G~~~~ 103 (136)
++|.+.|+-.+-+|..+.
T Consensus 3 keifkaglgslvkgiaah 20 (26)
T 2l5r_A 3 KEIFKAGLGSLVKGIAAH 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 444444555555555544
No 9
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=24.77 E-value=18 Score=19.03 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=15.2
Q ss_pred CcHHHHHHHHHHh-Cccccc
Q psy14763 79 NSMWALVTYTAKL-GPAGFF 97 (136)
Q Consensus 79 ~~~~~~~~~i~~~-G~~g~y 97 (136)
+++...+.+||++ ++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 3567888889998 888876
No 10
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=23.93 E-value=39 Score=18.81 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHHHh-Cc----cccccchhHHHhhH
Q psy14763 77 QFNSMWALVTYTAKL-GP----AGFFKGYFPAFVRL 107 (136)
Q Consensus 77 ~~~~~~~~~~~i~~~-G~----~g~y~G~~~~~~~~ 107 (136)
++.+...-+..++.+ |+ +..|.|+.....|.
T Consensus 7 kftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 7 KFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp -CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 344555555566666 65 45777777655543
No 11
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=20.55 E-value=1.1e+02 Score=19.92 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhcc----CCCCC-CCHHHHHHHHHHHHHHHHHh
Q psy14763 18 LKEQLKQCKTVKLGLLS----TPYFE-DNATTHFLSSLTAGAIATTM 59 (136)
Q Consensus 18 ~~~~f~~y~~~k~~~~~----~~~~~-~~~~~~~~ag~~a~~~~~~~ 59 (136)
..+.|..||..|-..-+ +.... ......++||..|++++.++
T Consensus 113 gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 113 GFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp GHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 45778888888865432 21111 45778899998888766544
Done!