RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14763
(136 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 125 bits (316), Expect = 2e-36
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 27 TVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATPGQFNSMWALVT 86
+K LL D+ HF S+ AG T + P+DV+KTR MN+ GQ++S
Sbjct: 187 LIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCAL 246
Query: 87 YTAK-LGPAGFFKGYFPAFVRLAPQTILTFVFLEQLR--LNFGFIKEESPQT 135
+ GP F+KG+ P+F+RL ++ FV EQL+ L + E+P
Sbjct: 247 TMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPFH 298
Score = 53.8 bits (130), Expect = 1e-09
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 43 TTHFLSSLTAGAIATTMTQPLDVLKTR----------AMNATPGQFNSMWALVTYTAKL- 91
T FL + TA IA +T PLD K R A Q+ + + +
Sbjct: 2 TVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTE 61
Query: 92 GPAGFFKGYFPAFVRLAPQTILTFVFLEQLR 122
GP + G R + + ++
Sbjct: 62 GPRSLYNGLVAGLQRQMSFASVRIGLYDSVK 92
Score = 41.9 bits (99), Expect = 1e-05
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 27 TVKLGL-------LSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTR--AMNATPGQ 77
+V++GL + + L+ T GA+A + QP DV+K R A G
Sbjct: 82 SVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGG 141
Query: 78 FN--SMW-ALVTYTAKLGPAGFFKGYFPAFVRLA 108
S A T + G G +KG P R A
Sbjct: 142 RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNA 175
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 56.9 bits (138), Expect = 8e-11
Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 11/97 (11%)
Query: 36 PYFEDNATTHFLSSLTAGAIATTMTQ----PLDVLKTRAM-----NATPGQFNSMW-ALV 85
D H + S T + P D ++ R M +
Sbjct: 199 GMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWR 258
Query: 86 TYTAKLGPAGFFKGYFPAFVRLAPQTILTFVFLEQLR 122
GP FFKG + +R V ++++
Sbjct: 259 KIAKDEGPKAFFKGAWSNVLRGMGGAF-VLVLYDEIK 294
Score = 56.1 bits (136), Expect = 2e-10
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 19/121 (15%)
Query: 8 YDEFKQSVEQLKEQLKQCKTVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLK 67
D++KQ ++ KQ F + S AGA + PLD +
Sbjct: 91 KDKYKQIFLGGVDRHKQ-------------FWRYFAGNLASGGAAGATSLCFVYPLDFAR 137
Query: 68 TR-----AMNATPGQFNSMW-ALVTYTAKLGPAGFFKGYFPAFVRLAPQTILTFVFLEQL 121
TR A +F + + G G ++G+ + + F +
Sbjct: 138 TRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTA 197
Query: 122 R 122
+
Sbjct: 198 K 198
Score = 49.9 bits (120), Expect = 2e-08
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 45 HFLSSLTAGAIATTMTQPLDVLKTRAMN-------ATPGQFNSMWALVTYTAKL-GPAGF 96
FL+ A AI+ T P++ +K + Q+ + V K G F
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 97 FKGYFPAFVRLAPQTILTFVFLEQLRLNFGFIKEESPQ 134
++G +R P L F F ++ + F + Q
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ 107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 3e-04
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 20/48 (41%)
Query: 12 KQSVEQLKEQLKQCKTVKLGLLSTPYFEDNATTHFLSSLTAGAIATTM 59
KQ++++L+ LK Y +D+A +L AI TM
Sbjct: 19 KQALKKLQASLK------------LYADDSA-----PAL---AIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.30
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 40/121 (33%)
Query: 32 LLSTPYFEDNATTHFLSSLT----AGAI-ATTMTQP---------LDVLKTRAMNATPGQ 77
L + F++ +S T G + AT TQP + LK++ +
Sbjct: 1701 LKTEKIFKE--INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI----P 1754
Query: 78 FNSMWA---LVTYTAKLGPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFG-FIKEESP 133
++ +A L Y A A + V + VF R G ++ P
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMS--IESLVEV--------VF---YR---GMTMQVAVP 1798
Query: 134 Q 134
+
Sbjct: 1799 R 1799
Score = 26.2 bits (57), Expect = 4.3
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 12/48 (25%)
Query: 21 QLKQ----CKTVKLGLLSTP-YFEDN---ATTHFLSSLTAGAIATTMT 60
QL K LG TP AT H +TA AIA T +
Sbjct: 245 QLAHYVVTAKL--LGF--TPGELRSYLKGATGHSQGLVTAVAIAETDS 288
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 28.1 bits (63), Expect = 0.34
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 2 KRLQGEYDEFKQSVEQLKEQLKQCKT 27
++L E D ++ EQLK +L+Q
Sbjct: 62 QKLISEEDLLRKRREQLKHKLEQLGG 87
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 27.9 bits (63), Expect = 0.99
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 7 EYDEFKQSVEQLKEQLKQCKTVKL 30
E F +SVE ++ ++ K++ L
Sbjct: 305 EKSLFSKSVESIQNLVQDLKSLNL 328
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 27.8 bits (63), Expect = 1.2
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 7 EYDEFKQSVEQLKEQLKQCKTVK 29
E +F S + LK+ + + + +K
Sbjct: 295 EQSKFAHSAKTLKDIMAEAEELK 317
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase;
transcription hydrolase complex, nucleotide-binding;
2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Length = 109
Score = 26.7 bits (59), Expect = 1.6
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 1 MKRLQGEYDEFKQSVEQLKEQLKQCKTV 28
MK+L+ + +E L+ ++ + ++
Sbjct: 9 MKQLEDKVEELLSKNYHLENEVARLRSP 36
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor,
TIM barrel, sialic acid synthase, transfera; HET: WQP;
1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A*
1xuu_A 3cm4_A
Length = 349
Score = 26.7 bits (60), Expect = 2.3
Identities = 6/48 (12%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 8 YDEFKQSVEQLKEQLKQCKTVKLGLLSTPYFEDNATTHFLSSLTAGAI 55
+ + E + + ++ + +ST + A L + A
Sbjct: 83 MERCALNEEDEIKLKEYVESKGMIFISTLF--SRAAALRLQRMDIPAY 128
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural
genomics, protein structure initiative; 2.49A
{Chromobacterium violaceum atcc 12472}
Length = 350
Score = 26.8 bits (60), Expect = 2.5
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 8 YDEFKQSVEQLKEQLKQCKTVKLGLLSTPYFEDNATTHFLSSLTAGAI 55
++E + EQ+++ + + K + TP+ D + + + I
Sbjct: 70 FEETRLQPEQMQKLVAEMKANGFKAICTPF--DEESVDLIEAHGIEII 115
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA,
BHLHZ, heterodimer, transcription/DNA complex; 1.80A
{Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A
1nlw_B
Length = 83
Score = 25.4 bits (56), Expect = 3.5
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 2 KRLQGEYDEFKQSVEQLKEQLKQCKT 27
Q + D+ K+ L++Q++
Sbjct: 57 HTHQQDIDDLKRQNALLEQQVRALGG 82
>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel,
beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP:
b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*
Length = 382
Score = 26.0 bits (58), Expect = 4.1
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 9/31 (29%)
Query: 43 TTHFLSSLTAGAIATTMTQPLDVLKTRAMNA 73
T++L T +T +++K + +
Sbjct: 92 CTNYL--------PTLITTSDELMK-QGVRV 113
>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct
phosphate, carbohydrate metabolism, hydrolase; HET: F6P;
2.53A {Vibrio cholerae} PDB: 3egj_A*
Length = 381
Score = 26.0 bits (58), Expect = 4.1
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 9/31 (29%)
Query: 43 TTHFLSSLTAGAIATTMTQPLDVLKTRAMNA 73
T FL T +T + ++ +A+ A
Sbjct: 92 CTSFL--------PTLITSSDENMR-QAIAA 113
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG,
protein structure initiative, BS SPSE, PSI; 2.38A
{Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Length = 385
Score = 25.7 bits (57), Expect = 5.1
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 8 YDEFKQSVEQLKEQLKQCKTVKLGLLSTPYFEDNATTHFLSSLTAGAI 55
+ E + L C+ ++ LST D + L S + A
Sbjct: 93 VQSMEMPAEWILPLLDYCREKQVIFLSTVC--DEGSADLLQSTSPSAF 138
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 25.6 bits (57), Expect = 5.3
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 7 EYDEFKQSVEQLKEQLKQCKTV 28
E F++S E +K+ ++ K +
Sbjct: 292 EIIAFRKSAEIIKKYCEEVKNL 313
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 5.3
Identities = 8/55 (14%), Positives = 21/55 (38%)
Query: 14 SVEQLKEQLKQCKTVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKT 68
+ L ++ +L +++ + AT + + T + L+VL+
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Score = 26.0 bits (56), Expect = 5.4
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 99 GYFPAFV----RLAPQTILTFVFLEQLRLNFGFIK 129
YF + + + +F + L+F F++
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFLE 504
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 25.9 bits (58), Expect = 5.3
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 7 EYDEFKQSVEQLKEQLKQCKTVK 29
E + K S + L + ++
Sbjct: 286 EKAQLKTSAGHVHSNLDDLQRLR 308
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 25.5 bits (57), Expect = 6.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 7 EYDEFKQSVEQLKEQLKQCKTV 28
E + + S EQ+K+ L + K +
Sbjct: 297 EEEALRFSAEQVKKVLNEVKNL 318
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 25.2 bits (56), Expect = 8.1
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 7 EYDEFKQSVEQLKEQLKQCKTVK 29
E +F++SV+ + K ++
Sbjct: 306 EKKQFQKSVDDVMALNKAVAALQ 328
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A);
basic-helix-loop- helix-leucine zipper, transcription
factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1
PDB: 1ukl_C
Length = 82
Score = 24.3 bits (53), Expect = 8.4
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 1 MKRLQGEYDEFKQSVEQLKEQLKQCKTVK 29
++ LQ + KQ L+ + + K++K
Sbjct: 52 IRFLQHSNQKLKQENLSLRTAVHKSKSLK 80
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 25.1 bits (56), Expect = 8.7
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 7 EYDEFKQSVEQLKEQLKQCKTV 28
E S + ++ L K++
Sbjct: 288 EMALLNASAKAVRATLDTLKSL 309
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 25.2 bits (55), Expect = 9.7
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 64 DVLKTRAMNATPGQFNSMWALVTYTAKLGPAGFFKGYFPAFVR 106
D+++ + + Q S+ L + + PA G+ +
Sbjct: 356 DIVEKKIR--SSEQLWSLLPLHAVLSSVYPASKVAGHMAGRIN 396
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.388
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,946,711
Number of extensions: 99414
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 33
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.6 bits)