BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14765
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC + K V C+ +N +P+GI +T++L+L N I +++ F + +
Sbjct: 34 TCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL--RH 89
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIN 139
++ L L + + ++ AF G+ N++ L+L DN L+T+P + +Y+ LK + L +NPI
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
I SY+F P +R +D+ + + SE +
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 33 AGKRTVECIDRNFYTIPEGIDL---DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK 89
A T+E D TIP G + + L L +N I + F + I ++++L L +
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR--IPSLRRLDLGE 169
Query: 90 CK-LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQS 148
K L ++ + AF G++N+ L+L+ L +P+L + L ++L+ N ++ I SFQ
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 149 TPGIRYIDMSNCQIHTIYSEAF 170
++ + M QI I AF
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAF 251
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
T SCP CSC +A + V C R +P I ++T+ L+L N+I V++ + F +
Sbjct: 2 TGTSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHL- 58
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHN 136
+++ L L K + ++ AF G+ +++ L+L DN L+TVP + Y+ L+ + L +N
Sbjct: 59 -RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 137 PINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
PI I SY+F P +R +D+ + SEA +
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+LS N +++++ F G+T+++KL+L ++ ++ AF + +++EL+LS N L
Sbjct: 181 EELELSGNRLDLIRPGSF--QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Query: 117 STVPSLIYIPY--LKSINLAHNP 137
++P ++ P L+ ++L HNP
Sbjct: 239 MSLPHDLFTPLHRLERVHLNHNP 261
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 37 TVECIDRNFYTIP-EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEF 94
T+E D T+P + + +++ +L N + + + ++++L L + K LE+
Sbjct: 87 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRY 154
+ + AF G+ N+ L+L L +P+L + L+ + L+ N ++ I SFQ +R
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 155 IDMSNCQIHTIYSEAF 170
+ + + Q+ TI AF
Sbjct: 207 LWLMHAQVATIERNAF 222
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
T SCP CSC +A + V C R +P I ++T+ L+L N+I V++ + F +
Sbjct: 2 TGTSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHL- 58
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHN 136
+++ L L K + ++ AF G+ +++ L+L DN L+TVP + Y+ L+ + L +N
Sbjct: 59 -RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 137 PINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
PI I SY+F P +R +D+ + SEA +
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 37 TVECIDRNFYTIP-EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEF 94
T+E D T+P + + +++ +L N + + + ++++L L + K LE+
Sbjct: 87 TLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRY 154
+ + AF G+ N+ L+L L +P+L + L+ + L+ N ++ I SFQ +R
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 155 IDMSNCQIHTIYSEAF 170
+ + + Q+ TI AF
Sbjct: 207 LWLMHAQVATIERNAF 222
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+LS N +++++ F G+T+++KL+L ++ ++ AF + +++EL+LS N L
Sbjct: 181 EELELSGNRLDLIRPGSF--QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Query: 117 STVPSLIYIPY--LKSINLAHNP 137
++P ++ P L+ ++L HNP
Sbjct: 239 MSLPHDLFTPLHRLERVHLNHNP 261
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC + K V C R +P+GI +T+ L+L NNI ++Q + F + +
Sbjct: 45 NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHL--HH 100
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIN 139
++ L L + + ++ AF G+ +++ L+L DN L+ +PS Y+ L+ + L +NPI
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
I SY+F P + +D+ + SE +
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 33 AGKRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK 91
A T+E D IP G + +++ +L N + + + ++ +L L + K
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182
Query: 92 -LEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTP 150
LE++ + AF G+ N+ L+L + +P+L + L+ + ++ N +I SF
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242
Query: 151 GIRYIDMSNCQIHTIYSEAF 170
++ + + N Q+ I AF
Sbjct: 243 SLKKLWVMNSQVSLIERNAF 262
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM---- 77
CP C C A R V C + F +PEGI +T++LDL N I L ++ F
Sbjct: 2 GCPPRCECS--AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLE 59
Query: 78 ------------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
+ N++ L LR +L+ + F G++N+ +LD+S+N + +
Sbjct: 60 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119
Query: 120 PSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ + LKS+ + N + IS +F + + + C + +I +EA
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+S N I +L +F + N++ L + L ++ RAF G+ ++++L L L++
Sbjct: 109 LDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 119 VP--SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
+P +L ++ L + L H IN I YSF+ ++ +++S H Y + L
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS----HWPYLDTMTPNCLY 222
Query: 177 GSNLT 181
G NLT
Sbjct: 223 GLNLT 227
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPI 138
N+ L + C L V A R + + L+LS N +ST+ L + L+ I L +
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 139 NQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY------VMVLPGSNLTLDCRVQSATPC 192
+ Y+F+ +R +++S Q+ T+ F+ ++L + L D C
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD--------C 336
Query: 193 RIMWSINRK 201
R++W R+
Sbjct: 337 RLLWVFRRR 345
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 36/222 (16%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
+ L+LS N I+ ++ + ++ +Q++ L +L V+ AFRG+ + L++S N L
Sbjct: 251 RFLNLSYNPISTIEGSMLHEL--LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 117 STVPSLIY--IPYLKSINLAHNPI----------------------------NQISSYSF 146
+T+ ++ + L+++ L NP+ + F
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEF 368
Query: 147 QSTPGIRYIDMSNCQIHTIY-SEAFYVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDH 205
+ P + + C+ I +A V V G + CR P I+W RK
Sbjct: 369 KDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVS 428
Query: 206 VNWNSNKINIKEETVLSKDNSYLSVFSGGVDLAAASSPGGEN 247
N + T+ + Y V G L A++ GG +
Sbjct: 429 AKSNGRLTVFPDGTL---EVRYAQVQDNGTYLCIAANAGGND 467
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
GC+C GK+ V+C ++ ++P GI DT+ LDL S + L F G+T + L
Sbjct: 9 GCTCN--EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKLTWL 64
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISS 143
L +L+ + F +T + L L++N L+++P ++ + L + L N + + S
Sbjct: 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 144 YSFQSTPGIRYIDMSNCQIHTIYSEAF 170
F ++ + ++ Q+ +I + AF
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAF 151
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 37 TVECIDRNFYTIPEGI-DLDTQV--LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
T+ + ++P G+ D TQ+ L L N + L +F ++ T +++L L +L+
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL--TKLKELRLNTNQLQ 144
Query: 94 FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIN 139
+ AF +TN+ L LS N L +VP + + L++I L N +
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
GC+C GK+ V+C ++ ++P GI DT+ LDL S + L F G+T + L
Sbjct: 9 GCTCN--EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKLTWL 64
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISS 143
L +L+ + F +T + L L++N L+++P ++ + L + L N + + S
Sbjct: 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 144 YSFQSTPGIRYIDMSNCQIHTIYSEAF 170
F ++ + ++ Q+ +I + AF
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAF 151
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 37 TVECIDRNFYTIPEGI-DLDTQV--LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
T+ + ++P G+ D TQ+ L L N + L +F ++ T +++L L +L+
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL--TKLKELRLNTNQLQ 144
Query: 94 FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIN 139
+ AF +TN+ L LS N L +VP + + L++I L N +
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 8/150 (5%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC TVEC + ++P GI T LDL +N++ L +F ++ T++
Sbjct: 1 CPSRCSCS----GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDEL--TSL 54
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQ 140
+LYL KL+ + + F +T++ L+LS N L ++P+ ++ + LK + L N +
Sbjct: 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ F ++ + + Q+ ++ F
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
A CP CSC + V C + ++P GI D Q L L++N I L+ +F +
Sbjct: 4 AGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHL--V 57
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
N+Q+LY KL + F +T + +LDL+DN L ++P + + L I L +NP
Sbjct: 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 15 LASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIF 74
L A CP GC C R V+C D +P+ I DT +LDL +N+I+ L+K+ F
Sbjct: 19 LPPTYSAMCPFGCHCHL----RVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF 74
Query: 75 LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
G+ ++ L L K+ + ++AF + + +L +S N L +P
Sbjct: 75 --KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 31/220 (14%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
A+CP CSC TV+C + ++P GI + Q+L L N I L+ +F +
Sbjct: 11 AACPSQCSCS----GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVF--DSLI 64
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
N+++LYL +L + F +T + LDL N L+ +PS ++ + +LK + + N +
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 139 NQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLT--------LDCRVQSAT 190
++ + + ++ + Q+ +I AF + S+LT DC
Sbjct: 125 TELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRL----SSLTHAYLFGNPWDCE----- 174
Query: 191 PCRIMWSINRKIYDH----VNWNSNKINIKEETVLSKDNS 226
CR + + + DH + W+ +N + + N+
Sbjct: 175 -CRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGTNT 213
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
SCP C C + C + +P+ + T +LDLS NN++ L+ E + +TN
Sbjct: 11 SCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTN 65
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIN 139
+ L L L F+ AF V N+ LDLS N L T+ ++ + L+ + L +N I
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
Query: 140 QISSYSFQSTPGIRYIDMSNCQI 162
+ +F+ ++ + +S QI
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQI 148
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
CSC K +V+C + IP I DT+ LDL SN ++ L + F ++ T ++ LY
Sbjct: 12 CSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRL--TKLRLLY 67
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSY 144
L KL+ + F+ + N++ L ++DN L +P ++ + L + L N + +
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127
Query: 145 SFQSTPGIRYIDMSNCQIHTIYSEAF 170
F S + Y+ + ++ ++ F
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVF 153
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C+ TV+C R IP I L T L L+ N + + + + ++
Sbjct: 2 CPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGR-LPHL 56
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPINQ 140
KL L++ +L ++ AF G +++ EL L +N + + + +++ LK++NL N I+
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116
Query: 141 ISSYSFQSTPGIRYIDMS----NCQIHTIY 166
+ SF+ + ++++ NC H +
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP C C+ TV+C ++ IPE I T L L++N VL+ + +
Sbjct: 4 ACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKK-LPQ 58
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIN 139
++K+ K+ +++ AF G + ++E+ L+ N L V ++ + LK++ L N I
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + SF +R + + + QI T+ AF
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 31/176 (17%)
Query: 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
G C T +C++ NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 1 GSPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFF--SFPELQVL 58
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNL-----------LSTVPSLI----------- 123
L +C+++ ++D A++ ++++ L L+ N LS++ L+
Sbjct: 59 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 118
Query: 124 ----YIPYLKSINLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
++ LK +N+AHN I ++ Y F + + ++D+S+ +I +IY V+
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 173
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 13 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 70
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 71 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKE 130
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
+N+AHN I ++ Y F + + ++D+S+ +I +IY V+
Sbjct: 131 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 13 TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 70
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 71 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 130
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
+N+AHN I ++ Y F + + ++D+S+ +I +IY V+
Sbjct: 131 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 68
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
+N+AHN I ++ Y F + + ++D+S+ +I +IY V+
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCEIQTIE 68
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
+N+AHN I ++ Y F + + ++D+S+ +I +IY V+
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 57 QVLDLSSNNI--NVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
+VL ++ N+ N L +IF ++ N+ L L +C+LE + AF ++++ L+++ N
Sbjct: 448 EVLKMAGNSFQENFL-PDIFTEL--RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 115 LLSTVPSLIY--IPYLKSINLAHNP 137
L +VP I+ + L+ I L NP
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNP 529
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
++CP CSC TV+C ++ ++P GI TQVL L N I L+ +F ++ T
Sbjct: 9 SACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--T 62
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ +L L +L + F +T + +L L+DN L ++P + + L I L +NP
Sbjct: 63 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 121
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 92
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
+N+AHN I ++ Y F + + ++D+S+ +I +IY V+
Sbjct: 153 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 196
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C++ NFY IP+ + T+ LDLS N + L F +Q L L +C+++ ++
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 68
Query: 97 DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
D A++ ++++ L L+ N LS++ L+ ++ LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
+N+AHN I ++ Y F + + ++D+S+ +I +IY
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 129 KSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
K+++L+ NP+ + SYSF S P ++ +D+S C+I TI A+
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC TV+C ++ ++P GI TQVL L N I L+ +F ++ T
Sbjct: 2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--TQ 55
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ +L L +L + F +T + +L L+DN L ++P + + L I L +NP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
G C T +C + NFY IP+ + T+ LDLS N + L F +Q L
Sbjct: 1 GSPCVEVVPNITYQCEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVL 58
Query: 86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNL-----------LSTVPSLI----------- 123
L +C+++ ++D A++ ++++ L L+ N LS++ L+
Sbjct: 59 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 118
Query: 124 ----YIPYLKSINLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVM 173
++ LK +N+AHN I ++ Y F + + ++D+S+ +I +IY V+
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVL 173
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
+CP CSC TV+C ++ ++P GI TQVL L N I L+ +F ++ T
Sbjct: 2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRL--TQ 55
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ +L L +L + F +T + +L L+DN L ++P + + L I L +NP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C + K T C + +P GI +Q + L N I+ + F N+
Sbjct: 1 CPGACVC-YNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASF--QSCRNL 57
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVPSLIY--IPYLKSINLAHNPIN 139
L+L L +D AF G+T +++LDLSDN L V + + +L +++L +
Sbjct: 58 TILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ F+ ++Y+ + + + + F
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNNLQALPDNTF 148
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAH 135
G+ +Q LYL+ L+ + D FR + N+ L L N + +VP + + L + L
Sbjct: 126 GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQ 185
Query: 136 NPINQISSYSFQ 147
N + ++ ++F+
Sbjct: 186 NHVARVHPHAFR 197
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
DLS + I L K +F T++++L L + ++ +DD AF G+T++ +L+LS N L ++
Sbjct: 281 DLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338
Query: 120 PSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
S ++ + L+ ++L++N I + SF P ++ + + Q+ ++ F
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C + K T C + +P GI +Q + L N I+ + F N+
Sbjct: 2 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 58
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN--LLSTVPSLIY-IPYLKSINLAHNPIN 139
L+L L +D AF G+ +++LDLSDN L S P+ + + L +++L +
Sbjct: 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ F+ ++Y+ + + + + + F
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAH 135
G+ +Q LYL+ L+ + D FR + N+ L L N +S+VP + + L + L
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186
Query: 136 NPINQISSYSFQ 147
N + + ++F+
Sbjct: 187 NRVAHVHPHAFR 198
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C + K T C + +P GI +Q + L N I+ + F N+
Sbjct: 1 CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 57
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN--LLSTVPSLIY-IPYLKSINLAHNPIN 139
L+L L +D AF G+ +++LDLSDN L S P+ + + L +++L +
Sbjct: 58 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ F+ ++Y+ + + + + + F
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNALQALPDDTF 148
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAH 135
G+ +Q LYL+ L+ + D FR + N+ L L N +S+VP + + L + L
Sbjct: 126 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 185
Query: 136 NPINQISSYSFQ 147
N + + ++F+
Sbjct: 186 NRVAHVHPHAFR 197
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
A+CP CSC TV C +R+ ++P GI TQVL L N I L+ +F +T
Sbjct: 11 AACPSQCSCS----GTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVF--DSLT 64
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+ L L +L + F +T + L L N L ++P ++ + L I L +NP
Sbjct: 65 QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNP 123
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 43 RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
R+F +IP G+ + LDLS N I + N+Q L L+ ++ ++ AF
Sbjct: 41 RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGDAFYS 98
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNP 137
+ +++ LDLSDN LS++ S + P LK +NL NP
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 135
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQ 83
P+ SC+W R + + I +VLD+S+NN++ + + +Q
Sbjct: 427 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS------FSLFLPRLQ 480
Query: 84 KLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+LY+ + KL+ + D + V + + ++ N L +VP I+ + L+ I L NP
Sbjct: 481 ELYISRNKLKTLPDASLFPV--LLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNP 534
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 32/176 (18%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C+D+ +P+ I T+ +DLS N + +L+ F + +Q L L +C++E ++
Sbjct: 10 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSF--SNFSELQWLDLSRCEIETIE 67
Query: 97 DRAFRGVTNMDELDLSDNLLST---------------------VPSLIYIPY-----LKS 130
D+A+ G+ ++ L L+ N + + + SL P LK
Sbjct: 68 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 127
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTI-YSEAFYVMVLPGSNLTLD 183
+N+AHN I+ ++ +Y F + + ++D+S I TI ++ ++ P NL+LD
Sbjct: 128 LNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 182
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 32/176 (18%)
Query: 37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
T +C+D+ +P+ I T+ +DLS N + +L+ F + +Q L L +C++E ++
Sbjct: 15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSF--SNFSELQWLDLSRCEIETIE 72
Query: 97 DRAFRGVTNMDELDLSDNLLST---------------------VPSLIYIPY-----LKS 130
D+A+ G+ ++ L L+ N + + + SL P LK
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132
Query: 131 INLAHNPIN--QISSYSFQSTPGIRYIDMSNCQIHTI-YSEAFYVMVLPGSNLTLD 183
+N+AHN I+ ++ +Y F + + ++D+S I TI ++ ++ P NL+LD
Sbjct: 133 LNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 43 RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
R+F +IP G+ + LDLS N I + N+Q L L+ ++ ++ AF
Sbjct: 15 RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGDAFYS 72
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNP 137
+ +++ LDLSDN LS++ S + P LK +NL NP
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQ 83
P+ SC+W R + + I +VLD+S+NN++ + + +Q
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS------FSLFLPRLQ 454
Query: 84 KLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
+LY+ + KL+ + D + V + + +S N L +VP I+ + L+ I L NP
Sbjct: 455 ELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 10/152 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP CSC + C + ++P GI L+L SN + L +F + +T +
Sbjct: 1 CPSRCSCSGTE----IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDK--LTQL 54
Query: 83 QKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIN 139
KL L L F ++ G T++ LDLS N + T+ S + + L+ ++ H+ +
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHTIYSEAF 170
Q+S +S F S + Y+D+S+ ++ F
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C R V+C D +P+ + DT +LDL +N I ++ F + N+
Sbjct: 25 CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF--KNLKNL 78
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
L L K+ + AF + ++ L LS N L +P
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
+ D N TIP+G+ L L N I + G+ N+ KL L + VD+
Sbjct: 176 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDN 233
Query: 98 RAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPINQISSYSF 146
+ ++ EL L++N L VP L Y++ + L +N I+ I S F
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
+PE + Q L + N I ++K +F + + +L K +++ AF+G+ +
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS 158
+ ++D ++T+P + P L ++L N I ++ + S + + + +S
Sbjct: 175 YIRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
CP C C R V+C D +P+ + DT +LDL +N I ++ F + N+
Sbjct: 25 CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF--KNLKNL 78
Query: 83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
L L K+ + AF + ++ L LS N L +P
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
+ D N TIP+G+ L L N I + G+ N+ KL L + VD+
Sbjct: 176 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDN 233
Query: 98 RAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPINQISSYSF 146
+ ++ EL L++N L VP L Y++ + L +N I+ I S F
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 48 IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
+PE + Q L + N I ++K +F + + +L K +++ AF+G+ +
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMS 158
+ ++D ++T+P + P L ++L N I ++ + S + + + +S
Sbjct: 175 YIRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 28/139 (20%)
Query: 23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM----- 77
CP CSC + C + ++P GI L+L SN + L +F ++
Sbjct: 1 CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56
Query: 78 -----------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
+T + LYL + KL+ + + F +T + EL L N L +VP
Sbjct: 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Query: 121 SLIY--IPYLKSINLAHNP 137
I+ + L+ I L NP
Sbjct: 117 DGIFDRLTSLQKIWLHTNP 135
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 60 DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
DLS + I L K +F T++++L L + ++ +DD AF G+T++ EL L N L +V
Sbjct: 281 DLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSV 338
Query: 120 PSLIY--IPYLKSINLAHNP 137
P I+ + L+ I L NP
Sbjct: 339 PDGIFDRLTSLQKIWLHTNP 358
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTVP--SLIY 124
L +++ ++ T+IQ L L +L + F G+ TN+ +LDLS N L V S Y
Sbjct: 211 LTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSY 270
Query: 125 IPYLKSINLAHNPINQISSYSFQSTPGIRYIDM 157
+P L+ ++L +N I ++S SF +RY+ +
Sbjct: 271 LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIYI-PYLKSINLAHNP 137
+NI L L +L + F + + LD N +S + P L I P LK +NL HN
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 138 INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++QIS +F + +D+ + IH I S F
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPF 117
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL--- 115
LDLS NN++ + F + +++ L L ++ + R+F G++N+ L L
Sbjct: 253 LDLSYNNLHDVGNGSF--SYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQ 310
Query: 116 ---LSTVP-----SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN--CQIHTI 165
L++ P S ++ YL+ +N+ N I S +F ++Y+ +S + T+
Sbjct: 311 SVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTL 370
Query: 166 YSEAF 170
+E F
Sbjct: 371 TNETF 375
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA--------FRGVTNMDEL 109
+LDLS+NNI + +++ G+ N++ L + L + RA +G++++ L
Sbjct: 484 ILDLSNNNIANINEDLL--EGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHIL 541
Query: 110 DLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
+L N L +P ++ + LKSINL N +N++ + F +R +++ I ++
Sbjct: 542 NLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEK 601
Query: 168 EAFYVMVLPGSNL-TLDCRVQS--ATPCRIMWSINRKIYDHVN 207
+ F P NL +LD R T I W +N H N
Sbjct: 602 DVFGP---PFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTN 641
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 79 ITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTV 119
+ ++Q+L LR+ L+ VD FR + N+ LDLS+N ++ +
Sbjct: 453 VPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANI 495
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 28/163 (17%)
Query: 29 CKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLR 88
C K G RT C + IP+ + T+VL+ S N + +Q F ++ N+ L L
Sbjct: 7 CTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRL--INLIFLDLT 64
Query: 89 KCKLEFVDDRAFRGVTNMDELDLSDNLL---------------------STVPSLIYIPY 127
+C++ +V + F+ ++ + L+ N L + + +L +IP
Sbjct: 65 RCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPV 124
Query: 128 -----LKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTI 165
L+S++L N I+ I+ T ++ +D N IH I
Sbjct: 125 HNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYI 167
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 55 DTQVLDLSSNNIN--VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
D + L+L N+ + K LQM + +++ L L C L +D +AF G+ N++ LDLS
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQM-VGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLS 507
Query: 113 DNLLSTVPSLIYIPYLKS--INLAHNPINQISSYSFQSTPGIRYIDMSN 159
N L T S+ + +LK +N+A N I I + + I++S+
Sbjct: 508 HNSL-TGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSH 555
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQ 140
++ + L+K + + FR T + ELDL+ L+ +PS I + LK + L N +Q
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQ 314
Query: 141 ISSYSFQSTPGIR 153
+ + S P +R
Sbjct: 315 LCQINAASFPSLR 327
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136
+TN+ L L +L+ + + F +TN+ EL L +N L ++P ++ + L +NLAHN
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 137 PINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + F + +D+S Q+ ++ F
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
L L+ N + L +F ++ TN+++L L + +L+ + D F +TN+ L+L+ N L +
Sbjct: 90 LILTGNQLQSLPNGVFDKL--TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147
Query: 119 VPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+P ++ + L ++L++N + + F ++ + + Q+ ++ F
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTVP--SLIY 124
L +++ L++ T+I+ L L +L + F G+ TN+ LDLS N L+ V S +
Sbjct: 221 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 280
Query: 125 IPYLKSINLAHNPINQISSYSFQSTPGIRYIDM 157
+P L+ L +N I + S+S +RY+++
Sbjct: 281 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 313
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-- 115
+LDLS NN+NV+ + F + ++ +L ++ + + G+ N+ L+L +
Sbjct: 262 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 319
Query: 116 ----LSTVP-----SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN--CQIHT 164
L+++P S ++ L+ +N+ N I I S F ++Y+ +SN + T
Sbjct: 320 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 379
Query: 165 IYSEAF 170
+ +E F
Sbjct: 380 LTNETF 385
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKE------IFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
EG++ ++LDL NN+ L K I+ G++++ L L + + F+ +
Sbjct: 511 EGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 569
Query: 104 TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIR 153
+ +DL N L+T+P+ ++ LKS+NL N I + F P R
Sbjct: 570 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPAFR 619
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIY-IPYLKSINLAHNP 137
TNI L L +L + F + + LD+ N +S + P L +P LK +NL HN
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 138 INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++Q+S +F + + + + I I + F
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 127
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTV--PSLIY 124
L +++ L++ T+I+ L L +L + F G+ TN+ LDLS N L+ V S +
Sbjct: 216 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 275
Query: 125 IPYLKSINLAHNPINQISSYSFQSTPGIRYIDM 157
+P L+ L +N I + S+S +RY+++
Sbjct: 276 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 308
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-- 115
+LDLS NN+NV+ + F + ++ +L ++ + + G+ N+ L+L +
Sbjct: 257 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 314
Query: 116 ----LSTVP-----SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN--CQIHT 164
L+++P S ++ L+ +N+ N I I S F ++Y+ +SN + T
Sbjct: 315 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 374
Query: 165 IYSEAF 170
+ +E F
Sbjct: 375 LTNETF 380
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKE------IFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
EG++ ++LDL NN+ L K I+ G++++ L L + + F+ +
Sbjct: 506 EGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 564
Query: 104 TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIR 153
+ +DL N L+T+P+ ++ LKS+NL N I + F P R
Sbjct: 565 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPAFR 614
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIY-IPYLKSINLAHNP 137
TNI L L +L + F + + LD+ N +S + P L +P LK +NL HN
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 138 INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++Q+S +F + + + + I I + F
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 122
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 69 LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTVP--SLIY 124
L +++ L++ T+I+ L L +L + F G+ TN+ LDLS N L+ V S +
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270
Query: 125 IPYLKSINLAHNPINQISSYSFQSTPGIRYIDM 157
+P L+ L +N I + S+S +RY+++
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-- 115
+LDLS NN+NV+ + F + ++ +L ++ + + G+ N+ L+L +
Sbjct: 252 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 116 ----LSTVP-----SLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSN--CQIHT 164
L+++P S ++ L+ +N+ N I I S F ++Y+ +SN + T
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369
Query: 165 IYSEAF 170
+ +E F
Sbjct: 370 LTNETF 375
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 50 EGIDLDTQVLDLSSNNINVLQKE------IFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
EG++ ++LDL NN+ L K I+ G++++ L L + + F+ +
Sbjct: 501 EGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559
Query: 104 TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIR 153
+ +DL N L+T+P+ ++ LKS+NL N I + F P R
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPAFR 609
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIY-IPYLKSINLAHNP 137
TNI L L +L + F + + LD+ N +S + P L +P LK +NL HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 138 INQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++Q+S +F + + + + I I + F
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
SC CK +G + +IP G+ + LDLS+N I + LQ + N
Sbjct: 29 SCDRNGICKGSSG---------SLNSIPSGLTEAVKSLDLSNNRITYISNSD-LQRCV-N 77
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIN 139
+Q L L + +++ +F + +++ LDLS N LS + S + P L +NL NP
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 140 QISSYSF 146
+ S
Sbjct: 138 TLGETSL 144
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
SC CK +G + +IP G+ + LDLS+N I + LQ + N
Sbjct: 3 SCDRNGICKGSSG---------SLNSIPSGLTEAVKSLDLSNNRITYISNSD-LQRCV-N 51
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIN 139
+Q L L + +++ +F + +++ LDLS N LS + S + P L +NL NP
Sbjct: 52 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 140 QISSYSFQS 148
+ S S
Sbjct: 112 TLGETSLFS 120
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 31/143 (21%)
Query: 21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDT-----------------------Q 57
+ CP C+C V C ++ +P+GI D
Sbjct: 2 SRCPTECTCL----DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLT 57
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
++DLS+N I+ L + F M T + L L +L + R F G+ ++ L L N +S
Sbjct: 58 LIDLSNNRISTLSNQSFSNM--TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 118 TVPSLIY--IPYLKSINLAHNPI 138
VP + + L + + NP+
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 42 DRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
D FY G+D + QVL+LS N + L F G+ + + L+K + + D+ F+
Sbjct: 307 DEAFY----GLD-NLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPI 138
+ + LDL DN L+T+ +IP + I L+ N +
Sbjct: 360 FLEKLQTLDLRDNALTTIH---FIPSIPDIFLSGNKL 393
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 96 DDRAFRGV--TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPG 151
D F G+ +++ LDLS + ++ S ++ + LK +NLA+N IN+I+ +F
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 152 IRYIDMSNCQIHTIYSEAFY 171
++ +++S + +YS FY
Sbjct: 316 LQVLNLSYNLLGELYSSNFY 335
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 64 NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI 123
+NI + F + ++++ L L + ++ R F + ++ L+L+ N ++ +
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309
Query: 124 Y--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLT 181
+ + L+ +NL++N + ++ S +F P + YID+ I I + F + T
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL---EKLQT 366
Query: 182 LDCRVQSATPCRIMWSI 198
LD R + T + SI
Sbjct: 367 LDLRDNALTTIHFIPSI 383
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
QV L+ N++ + + + + IQKLY+ + ++ F+ V + L L N L
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 117 STVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
S++P I+ P L ++++++N + +I +FQ+T ++ + +S+ ++
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 23/160 (14%)
Query: 32 KAGKRTVECIDRN------FYTIPEGIDLDTQVLDLSSNNINVLQKEIF----------- 74
K + +CID N FY + ID+ TQ + +I + ++I
Sbjct: 4 KPRQPEYKCIDSNLQYDCVFYDV--HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61
Query: 75 --LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKS 130
L ++ L L ++E +D AF + +L + N + +P ++ +P L
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121
Query: 131 INLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ L N ++ + F +TP + + MSN + I + F
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI--NLAHN 136
+ +++ L L C L +D +AF + M +DLS N L T S+ + +LK I NLA N
Sbjct: 472 VGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL-TCDSIDSLSHLKGIYLNLAAN 530
Query: 137 PINQISS-----YSFQSTPGIRY--IDMSNCQIH--TIYSEAFYVM 173
IN IS S QST + + +D + IH T Y E + +
Sbjct: 531 SINIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKENLHKL 576
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP----SLIYIPYLKSINLAHN 136
N++KL+L LE + N+ LDLS N + L + +L+++NL+HN
Sbjct: 332 NVKKLHLGVGCLE--------KLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN 383
Query: 137 PINQISSYSFQSTPGIRYIDMSNCQIH 163
+ S +F+ P + +D++ ++H
Sbjct: 384 EPLGLQSQAFKECPQLELLDLAFTRLH 410
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPINQ 140
++ L L++ + + F+ T + ELDL+ L +PS + + LK + L+ N +Q
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQ 312
Query: 141 ISSYSFQSTPGIRYI 155
+ S + P + ++
Sbjct: 313 LCQISAANFPSLTHL 327
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
QV L+ N++ + + + + IQKLY+ + ++ F+ V + L L N L
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135
Query: 117 STVPSLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQI 162
S++P I+ P L ++++++N + +I +FQ+T ++ + +S+ ++
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 25 LGCSCKWKAGKRTVE--CIDRN------FYTIPEGIDLDTQVL-----DLSSNNINVL-- 69
+G ++ R E CID N FY + ID+ TQ + D++ NN ++
Sbjct: 1 VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDV--HIDMQTQDVYFGFEDITLNNQKIVTF 58
Query: 70 ------QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI 123
+ L ++ L L ++E +D AF + +L + N + +P +
Sbjct: 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118
Query: 124 Y--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ +P L + L N ++ + F +TP + + MSN + I + F
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136
+TN+ L L +L+ + + F +TN+ EL L +N L ++P ++ + L + L HN
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 137 PINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
+ + F + +D+ N Q+ ++ F
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L N + L +F ++ TN+ LYL +L+ + F +TN+ LDL +N L ++P
Sbjct: 116 LVENQLQSLPDGVFDKL--TNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Query: 121 SLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYI 155
++ + LK ++L N + + F + +I
Sbjct: 174 EGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 61 LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
L+ N + L +F ++ TN+++L L + +L+ + D F +TN+ L L N L ++P
Sbjct: 92 LTGNQLQSLPNGVFDKL--TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLP 149
Query: 121 SLIY--IPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
++ + L ++L +N + + F ++ + +++ Q+ ++ F
Sbjct: 150 KGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 15/162 (9%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C RN +P + DT +L LS N + M T + +L
Sbjct: 5 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 62
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSL-IYIPYLKSINLAHNPINQISSYS 145
L +C+L + V + LDLS N L ++P L +P L ++++ N+++S
Sbjct: 63 LDRCELTKLQVDGTLPV--LGTLDLSHNQLQSLPLLGQTLPALTVLDVS---FNRLTSLP 117
Query: 146 FQSTPGIRYIDMSNCQIHTIYSEAFYVMVLPGSNLTLDCRVQ 187
+ G+ ++ +Y + + LP LT +++
Sbjct: 118 LGALRGLG-------ELQELYLKGNELKTLPPGLLTPTPKLE 152
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 82 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 118 TVPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVL 175
T+P L P L+ ++LA+N + ++ + + + + ++TI F +L
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 198
Query: 176 P 176
P
Sbjct: 199 P 199
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 24/115 (20%)
Query: 54 LDTQVLDLSSN-NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
L +LD+ N NI+ +++ F+ + ++ L+L K ++ + + AF G T +DEL+LS
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESV-ILWLNKNGIQEIHNSAFNG-TQLDELNLS 185
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
DN N + ++ + F G +D+S +IH++ S
Sbjct: 186 DN---------------------NNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Query: 91 KLEFVDDRAFRGVTNMDELDLSDN---------LLSTVPSLIYIPYLKSINLAHNPINQI 141
KL + AF G +++++++S N + S +P L I K+ NL + I
Sbjct: 41 KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-----I 95
Query: 142 SSYSFQSTPGIRYIDMSNCQI------HTIYS 167
+ +FQ+ P ++Y+ +SN I H I+S
Sbjct: 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVL 175
T+P L P L+ ++LA+N + ++ + + + + ++TI F +L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 176 P 176
P
Sbjct: 198 P 198
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVL 175
T+P L P L+ ++LA+N + ++ + + + + ++TI F +L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 176 P 176
P
Sbjct: 198 P 198
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LDLS N LQ L + + L + +L + A RG+ + EL L N L T
Sbjct: 82 LDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 119 VPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
+P L P L+ ++LA+N + ++ + + + + ++TI F +LP
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LDLS N LQ L + + L + +L + A RG+ + EL L N L T
Sbjct: 82 LDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 119 VPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVLP 176
+P L P L+ ++LA+N + ++ + + + + ++TI F +LP
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVL 175
T+P L P L+ ++LA+N + ++ + + + + ++TI F +L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 176 P 176
P
Sbjct: 198 P 198
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 24/115 (20%)
Query: 54 LDTQVLDLSSN-NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
L +LD+ N NI+ +++ F+ + ++ L+L K ++ + + AF G T +DEL+LS
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESV-ILWLNKNGIQEIHNCAFNG-TQLDELNLS 185
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
DN N + ++ + F G +D+S +IH++ S
Sbjct: 186 DN---------------------NNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Query: 91 KLEFVDDRAFRGVTNMDELDLSDN---------LLSTVPSLIYIPYLKSINLAHNPINQI 141
KL + AF G +++++++S N + S +P L I K+ NL + I
Sbjct: 41 KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-----I 95
Query: 142 SSYSFQSTPGIRYIDMSNCQI------HTIYS 167
+ +FQ+ P ++Y+ +SN I H I+S
Sbjct: 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVL 175
T+P L P L+ ++LA+N + ++ + + + + ++TI F +L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 176 P 176
P
Sbjct: 198 P 198
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C RN +P + DT +L LS N + M T + +L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSL-IYIPYLKSINLAHNPINQISSYS 145
L + +L + V + LDLS N L ++P L +P L ++++ N + + +
Sbjct: 62 LDRAELTKLQVDGTLPV--LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 146 FQSTPGIRYIDMSNCQIHTI 165
+ ++ + + ++ T+
Sbjct: 120 LRGLGELQELYLKGNELKTL 139
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVL 175
T+P L P L+ ++LA+N + ++ + + + + ++TI F +L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 176 P 176
P
Sbjct: 198 P 198
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVL 175
T+P L P L+ ++LA+N + ++ + + + + ++TI F +L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 176 P 176
P
Sbjct: 198 P 198
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C RN +P + DT +L LS N + M T + +L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSL-IYIPYLKSINLAHNPINQISSYS 145
L + +L + V + LDLS N L ++P L +P L ++++ N + + +
Sbjct: 62 LDRAELTKLQVDGTLPV--LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 146 FQSTPGIRYIDMSNCQIHTI 165
+ ++ + + ++ T+
Sbjct: 120 LRGLGELQELYLKGNELKTL 139
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 58 VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
LDLS N LQ L + + L + +L + A RG+ + EL L N L
Sbjct: 81 TLDLSHNQ---LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 118 TVPS--LIYIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYVMVL 175
T+P L P L+ ++LA+N + ++ + + + + ++TI F +L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Query: 176 P 176
P
Sbjct: 198 P 198
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
C A V C RN +P + DT +L LS N + M T + +L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87 LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPINQISSYS 145
L + +L + V + LDLS N L ++P L +P L ++++ N + + +
Sbjct: 62 LDRAELTKLQVDGTLPV--LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 146 FQSTPGIRYIDMSNCQIHTI 165
+ ++ + + ++ T+
Sbjct: 120 LRGLGELQELYLKGNELKTL 139
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 181 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 234
Query: 119 VPSLIYIPYLKSINLAHNPINQISSYS 145
+ +L + L ++LA+N I+ ++ S
Sbjct: 235 IGTLASLTNLTDLDLANNQISNLAPLS 261
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 82 IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI--NLAHNPIN 139
++ L L C L +D AF + M+ +DLS N L T S+ + +LK I NLA N I+
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL-TSSSIEALSHLKGIYLNLASNHIS 536
Query: 140 QI 141
I
Sbjct: 537 II 538
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIN 139
N+QK Y + F + + ELDL+ LS +PS L+ + LK + L+ N
Sbjct: 260 NLQKHYFFN-----ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE 314
Query: 140 QISSYSFQSTPGIRYIDM 157
+ S + P + ++ +
Sbjct: 315 NLCQISASNFPSLTHLSI 332
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 182 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 235
Query: 119 VPSLIYIPYLKSINLAHNPINQISSYS 145
+ +L + L ++LA+N I+ ++ S
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAPLS 262
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 177 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 230
Query: 119 VPSLIYIPYLKSINLAHNPINQISSYS 145
+ +L + L ++LA+N I+ ++ S
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPLS 257
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 178 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 231
Query: 119 VPSLIYIPYLKSINLAHNPINQISSYS 145
+ +L + L ++LA+N I+ ++ S
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLS 258
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 178 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 231
Query: 119 VPSLIYIPYLKSINLAHNPINQISSYS 145
+ +L + L ++LA+N I+ ++ S
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLS 258
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 177 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 230
Query: 119 VPSLIYIPYLKSINLAHNPINQISSYS 145
+ +L + L ++LA+N I+ ++ S
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPLS 257
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 59 LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
LD+SSN + +I + +TN++ L ++ D +TN+DEL L+ N L
Sbjct: 178 LDISSNKV----SDISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD 231
Query: 119 VPSLIYIPYLKSINLAHNPINQISSYS 145
+ +L + L ++LA+N I+ ++ S
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLS 258
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 171 YVMVLPGSNLTLDCRVQSATPCRIMWSINRKIYDHV 206
Y PG NL+L C S P + W I+ I H
Sbjct: 390 YTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT 425
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNIN 67
P C W + ++ +P+G+ +VLDLSSN +N
Sbjct: 242 PSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLN 285
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 79 ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL 111
+T +Q LYL K + D RA RG+ N+D L+L
Sbjct: 175 LTKLQNLYLSKNHIS--DLRALRGLKNLDVLEL 205
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 91 KLEFVDDRAFRGVTNMDE--------LDLSDNLLSTV--PSLIYIPYLKSINLAHNPINQ 140
+LE + D + R +T++ + L LS N +S + P + ++ L+ + L+HN I
Sbjct: 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS 90
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTI 165
+ + F + Y+D+S+ ++ I
Sbjct: 91 LDFHVFLFNQDLEYLDVSHNRLQNI 115
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Query: 174 VLPGSNLTLDCRVQSATPCRIMWSINRKIYDHVNWNSNKINIKEE-----TVLSKD 224
VL G ++ L+C++ + P ++ W N ++ V +N+++I++ ++ T+L KD
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWKRNNEM---VQFNTDRISLYQDNTGRVTLLIKD 79
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 109 LDLSDNLLST-VPSLI-YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
LD+S N+LS +P I +PYL +NL HN I+ G+ +D+S+ ++
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 167 SEAFYVMVL 175
+A + +
Sbjct: 694 PQAMSALTM 702
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 109 LDLSDNLLST-VPSLI-YIPYLKSINLAHNPINQISSYSFQSTPGIRYIDMSNCQIHTIY 166
LD+S N+LS +P I +PYL +NL HN I+ G+ +D+S+ ++
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 167 SEAFYVMVL 175
+A + +
Sbjct: 697 PQAMSALTM 705
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,741,073
Number of Sequences: 62578
Number of extensions: 300566
Number of successful extensions: 1072
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 237
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)